BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9257
(530 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OBZ|A Chain A, Crystal Structure Of The Complex Of The Pdz Tandem Of
Syntenin With An Interleukin 5 Receptor Alpha Peptide.
pdb|1OBZ|B Chain B, Crystal Structure Of The Complex Of The Pdz Tandem Of
Syntenin With An Interleukin 5 Receptor Alpha Peptide.
pdb|1V1T|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneykv Peptide
pdb|1V1T|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneykv Peptide
pdb|1YBO|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin With
Syndecan Peptide
pdb|1YBO|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin With
Syndecan Peptide
pdb|1W9E|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefyf Peptide
pdb|1W9E|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefyf Peptide
pdb|1W9O|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneyyv Peptide
pdb|1W9O|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneyyv Peptide
pdb|1W9Q|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefaf Peptide
pdb|1W9Q|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefaf Peptide
Length = 166
Score = 204 bits (520), Expect = 7e-53, Method: Composition-based stats.
Identities = 92/159 (57%), Positives = 122/159 (76%)
Query: 348 RELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMK 407
RE++LCKD G IGLR+ +I+ G+FV LV+ SPASLVGLRFGDQ+L INGE AG++
Sbjct: 6 REVILCKDQDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSD 65
Query: 408 QVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSSGHFGFHFNKGQIVSLVKDSSAARNGL 467
+ HK+LK A I + IRDRP ERT+T+H+DS+GH GF F G+I S+VKDSSAARNGL
Sbjct: 66 KAHKVLKQAFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGL 125
Query: 468 LVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIP 506
L HNI E+NG NV+GLKD ++ + + G+V+T+T++P
Sbjct: 126 LTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMP 164
>pdb|1N99|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin
pdb|1N99|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin
Length = 166
Score = 202 bits (513), Expect = 6e-52, Method: Composition-based stats.
Identities = 92/159 (57%), Positives = 119/159 (74%)
Query: 348 RELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMK 407
RE++LCKD G IGLR+ +I+ G+FV LV+ SPASLVGLRFGDQ+L INGE AG++
Sbjct: 6 REVILCKDQDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSD 65
Query: 408 QVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSSGHFGFHFNKGQIVSLVKDSSAARNGL 467
+ HK+LK A I IRDRP ERT+T H+DS+GH GF F G+I S+VKDSSAARNGL
Sbjct: 66 KAHKVLKQAFGEKITXTIRDRPFERTITXHKDSTGHVGFIFKNGKITSIVKDSSAARNGL 125
Query: 468 LVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIP 506
L HNI E+NG NV+GLKD ++ + + G+V+T+T+ P
Sbjct: 126 LTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIXP 164
>pdb|1NTE|A Chain A, Crystal Structure Analysis Of The Second Pdz Domain Of
Syntenin
pdb|1R6J|A Chain A, Ultrahigh Resolution Crystal Structure Of Syntenin Pdz2
Length = 82
Score = 101 bits (251), Expect = 1e-21, Method: Composition-based stats.
Identities = 43/75 (57%), Positives = 60/75 (80%)
Query: 432 RTVTLHRDSSGHFGFHFNKGQIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLE 491
RT+T+H+DS+GH GF F G+I S+VKDSSAARNGLL HNI E+NG NV+GLKD ++ +
Sbjct: 6 RTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIAD 65
Query: 492 AMEKGGSVLTLTLIP 506
+ G+V+T+T++P
Sbjct: 66 ILSTSGTVVTITIMP 80
>pdb|1OBY|A Chain A, Crystal Structure Of The Complex Of Pdz2 Of Syntenin With
A Syndecan-4 Peptide.
pdb|1OBY|B Chain B, Crystal Structure Of The Complex Of Pdz2 Of Syntenin With
A Syndecan-4 Peptide.
pdb|1OBX|A Chain A, Crystal Structure Of The Complex Of Pdz2 Of Syntenin With
An Interleukin 5 Receptor Alpha Peptide
Length = 79
Score = 99.8 bits (247), Expect = 3e-21, Method: Composition-based stats.
Identities = 42/74 (56%), Positives = 59/74 (79%)
Query: 432 RTVTLHRDSSGHFGFHFNKGQIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLE 491
RT+T+H+DS+GH GF F G+I S+VKDSSAARNGLL HNI E+NG NV+GLKD ++ +
Sbjct: 6 RTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIAD 65
Query: 492 AMEKGGSVLTLTLI 505
+ G+V+T+T++
Sbjct: 66 ILSTSGTVVTITIM 79
>pdb|1U3B|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
Length = 185
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 70/138 (50%), Gaps = 7/138 (5%)
Query: 379 GSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRV---VIRDRPLERTV 434
G PA G L GDQI+SING ++ G + I+K N RV ++R P+ TV
Sbjct: 39 GGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLK-NQSRVKLNIVRCPPVT-TV 96
Query: 435 TLHR-DSSGHFGFHFNKGQIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAM 493
+ R D GF G I SL++ A R G+ V H I+E+NG +VV ++++ +
Sbjct: 97 LIRRPDLRYQLGFSVQNGIICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHIL 156
Query: 494 EKGGSVLTLTLIPTSMYQ 511
+ + +P +MY+
Sbjct: 157 SNAVGEIHMKTMPAAMYR 174
>pdb|3JXT|A Chain A, Crystal Structure Of The Third Pdz Domain Of Sap-102 In
Complex With A Fluorogenic Peptide-Based Ligand
pdb|3JXT|B Chain B, Crystal Structure Of The Third Pdz Domain Of Sap-102 In
Complex With A Fluorogenic Peptide-Based Ligand
Length = 104
Score = 45.8 bits (107), Expect = 6e-05, Method: Composition-based stats.
Identities = 37/101 (36%), Positives = 54/101 (53%), Gaps = 6/101 (5%)
Query: 334 SGSGLKKAYVTNGIRELVLCKDASGLIGLRVCA--INEGVFVCLVERGSPASLVG-LRFG 390
SGS L + T R+++L K ++GL G + EG+FV + G PA L G LR G
Sbjct: 1 SGS-LAEEDFTREPRKIILHKGSTGL-GFNIVGGEDGEGIFVSFILAGGPADLSGELRRG 58
Query: 391 DQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLE 431
D+ILS+NG + +Q LK A ++ +V + RP E
Sbjct: 59 DRILSVNGVNLRNATHEQAAAALKRAG-QSVTIVAQYRPEE 98
>pdb|2HE2|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Human Discs
Large Homologue 2, Dlg2
pdb|2HE2|B Chain B, Crystal Structure Of The 3rd Pdz Domain Of Human Discs
Large Homologue 2, Dlg2
Length = 102
Score = 45.4 bits (106), Expect = 7e-05, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Query: 348 RELVLCKDASGLIGLRVCA--INEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGY 404
R++VL K ++GL G + EG+FV + G PA L G L+ GDQILS+NG + G
Sbjct: 5 RKVVLHKGSTGL-GFNIVGGEDGEGIFVSFILAGGPADLSGELQRGDQILSVNGIDLRGA 63
Query: 405 NMKQVHKILKAA 416
+ +Q LK A
Sbjct: 64 SHEQAAAALKGA 75
>pdb|1UM7|A Chain A, Solution Structure Of The Third Pdz Domain Of Synapse-
Associated Protein 102
Length = 113
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Query: 348 RELVLCKDASGLIGLRVCA--INEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGY 404
R+++L K ++GL G + EG+FV + G PA L G LR GD+ILS+NG +
Sbjct: 17 RKIILHKGSTGL-GFNIVGGEDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNA 75
Query: 405 NMKQVHKILKAAPVNNIRVVIRDRPLE 431
+Q LK A ++ +V + RP E
Sbjct: 76 THEQAAAALKRAG-QSVTIVAQYRPEE 101
>pdb|2PNT|A Chain A, Crystal Structure Of The Pdz Domain Of Human Grasp (Grp1)
In Complex With The C-Terminal Peptide Of The
Metabotropic Glutamate Receptor Type 1
pdb|2PNT|B Chain B, Crystal Structure Of The Pdz Domain Of Human Grasp (Grp1)
In Complex With The C-Terminal Peptide Of The
Metabotropic Glutamate Receptor Type 1
Length = 98
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/45 (46%), Positives = 27/45 (60%)
Query: 372 FVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAA 416
FVC V SPA L GL GD I S+NG V G +++ I+KA+
Sbjct: 40 FVCRVHESSPAQLAGLTPGDTIASVNGLNVEGIRHREIVDIIKAS 84
Score = 37.7 bits (86), Expect = 0.016, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 14/91 (15%)
Query: 432 RTVTLHRDSSGHFGF-------HFNKGQIVSLV-------KDSSAARNGLLVNHNILEVN 477
+ +TL ++ + FGF H + Q V +V + S A GL I VN
Sbjct: 6 KVLTLEKEDNQTFGFEIQTYGLHHREEQRVEMVTFVCRVHESSPAQLAGLTPGDTIASVN 65
Query: 478 GANVVGLKDKELLEAMEKGGSVLTLTLIPTS 508
G NV G++ +E+++ ++ G+VL L + +S
Sbjct: 66 GLNVEGIRHREIVDIIKASGNVLRLETLYSS 96
>pdb|2YT8|A Chain A, Solution Structure Of The Pdz Domain Of Amyloid Beta A4
Precursor Protein-Binding Family A Member 3 (Neuron-
Specific X11l2 Protein) (Neuronal Munc18-1-Interacting
Protein 3) (Mint-3) (Adapter Protein X11gamma)
Length = 94
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 433 TVTLHR-DSSGHFGFHFNKGQIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLE 491
T +HR + GF G I SL++ A R G+ V H I+E+NG +VV ++E
Sbjct: 10 TAIIHRPHAREQLGFCVEDGIICSLLRGGIAERGGIRVGHRIIEINGQSVVATPHARIIE 69
Query: 492 AMEKGGSVLTLTLIPTSMYQ 511
+ + + + +P + Y+
Sbjct: 70 LLTEAYGEVHIKTMPAATYR 89
Score = 30.0 bits (66), Expect = 2.9, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 367 INEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAA 416
+ +G+ +C + RG A G+R G +I+ ING++V ++ ++L A
Sbjct: 26 VEDGI-ICSLLRGGIAERGGIRVGHRIIEINGQSVVATPHARIIELLTEA 74
>pdb|1GQ5|A Chain A, Structural Determinants Of The Nherf Interaction With
Beta2- Ar And Pdgfr
Length = 91
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 370 GVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRD 427
G ++ LVE GSPA GL GD+++ +NGE V +QV ++AA +N +R+++ D
Sbjct: 28 GQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAA-LNAVRLLVVD 84
Score = 32.0 bits (71), Expect = 0.79, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 7/58 (12%)
Query: 430 LERTVTLHRDSSGHFGFHFNK-----GQIVSLVKDSSAA-RNGLLVNHNILEVNGANV 481
L R L + +G +GFH + GQ + LV+ S A + GLL ++EVNG NV
Sbjct: 3 LPRLCCLEKGPNG-YGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENV 59
>pdb|1I92|A Chain A, Structural Basis Of The Nherf Pdz1-Cftr Interaction
Length = 91
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 370 GVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRD 427
G ++ LVE GSPA GL GD+++ +NGE V +QV ++AA +N +R+++ D
Sbjct: 28 GQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAA-LNAVRLLVVD 84
Score = 32.0 bits (71), Expect = 0.87, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 7/58 (12%)
Query: 430 LERTVTLHRDSSGHFGFHFNK-----GQIVSLVKDSSAA-RNGLLVNHNILEVNGANV 481
L R L + +G +GFH + GQ + LV+ S A + GLL ++EVNG NV
Sbjct: 3 LPRLCCLEKGPNG-YGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENV 59
>pdb|1G9O|A Chain A, First Pdz Domain Of The Human Na+H+ EXCHANGER REGULATORY
Factor
Length = 91
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 370 GVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRD 427
G ++ LVE GSPA GL GD+++ +NGE V +QV ++AA +N +R+++ D
Sbjct: 28 GQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAA-LNAVRLLVVD 84
Score = 33.1 bits (74), Expect = 0.37, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 7/60 (11%)
Query: 428 RPLERTVTLHRDSSGHFGFHFNK-----GQIVSLVKDSSAA-RNGLLVNHNILEVNGANV 481
R L R L + +G +GFH + GQ + LV+ S A + GLL ++EVNG NV
Sbjct: 1 RMLPRLCCLEKGPNG-YGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENV 59
>pdb|1GQ4|A Chain A, Structural Determinants Of The Nherf Interaction With
Beta2ar And Pdgfr
Length = 90
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 370 GVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRD 427
G ++ LVE GSPA GL GD+++ +NGE V +QV ++AA +N +R+++ D
Sbjct: 27 GQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAA-LNAVRLLVVD 83
Score = 32.0 bits (71), Expect = 0.99, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 7/58 (12%)
Query: 430 LERTVTLHRDSSGHFGFHFNK-----GQIVSLVKDSSAA-RNGLLVNHNILEVNGANV 481
L R L + +G +GFH + GQ + LV+ S A + GLL ++EVNG NV
Sbjct: 2 LPRLCCLEKGPNG-YGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENV 58
>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain
pdb|2XKX|B Chain B, Single Particle Analysis Of Psd-95 In Negative Stain
Length = 721
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Query: 348 RELVLCKDASGLIGLRVCA--INEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGY 404
R +V+ + ++GL G + EG+F+ + G PA L G LR GDQILS+NG +
Sbjct: 309 RRIVIHRGSTGL-GFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNA 367
Query: 405 NMKQVHKILKAA 416
+ +Q LK A
Sbjct: 368 SHEQAAIALKNA 379
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 14/85 (16%)
Query: 434 VTLHRDSSGHFGFHFNKGQ------------IVSLVKDSSAARNGLL-VNHNILEVNGAN 480
+TL R +SG GF G I ++ +AA++G L VN +IL VN +
Sbjct: 63 ITLERGNSG-LGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVD 121
Query: 481 VVGLKDKELLEAMEKGGSVLTLTLI 505
V + +EA+++ GS++ L ++
Sbjct: 122 VREVTHSAAVEALKEAGSIVRLYVM 146
>pdb|3I4W|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|B Chain B, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|C Chain C, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|D Chain D, Crystal Structure Of The Third Pdz Domain Of Psd-95
Length = 104
Score = 42.4 bits (98), Expect = 6e-04, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 5/98 (5%)
Query: 337 GLKKAYVTNGIRELVLCKDASGLIGLRVCA--INEGVFVCLVERGSPASLVG-LRFGDQI 393
GL + + R +V+ + ++GL G + EG+F+ + G PA L G LR GDQI
Sbjct: 2 GLGEEDIPREPRRIVIHRGSTGL-GFNIVGGEXGEGIFISFILAGGPADLSGELRKGDQI 60
Query: 394 LSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLE 431
LS+NG + + +Q LK A + ++ + +P E
Sbjct: 61 LSVNGVDLRNASHEQAAIALKNAG-QTVTIIAQYKPEE 97
>pdb|2VZ5|A Chain A, Structure Of The Pdz Domain Of Tax1 (Human T-Cell Leukemia
Virus Type I) Binding Protein 3
Length = 139
Score = 42.4 bits (98), Expect = 6e-04, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 36/67 (53%)
Query: 368 NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRD 427
++G++V V G PA + GL+ GD+I+ +NG + Q K L +R+++
Sbjct: 63 DKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTR 122
Query: 428 RPLERTV 434
+ L++ V
Sbjct: 123 QSLQKAV 129
>pdb|3K82|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95
Length = 98
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 5/87 (5%)
Query: 348 RELVLCKDASGLIGLRVCA--INEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGY 404
R +V+ + ++GL G + EG+F+ + G PA L G LR GDQILS+NG +
Sbjct: 8 RRIVIHRGSTGL-GFNIVGGEXGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNA 66
Query: 405 NMKQVHKILKAAPVNNIRVVIRDRPLE 431
+ +Q LK A + ++ + +P E
Sbjct: 67 SHEQAAIALKNAG-QTVTIIAQYKPEE 92
>pdb|2KG2|A Chain A, Solution Structure Of A Pdz Protein
Length = 124
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 36/67 (53%)
Query: 368 NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRD 427
++G++V V G PA + GL+ GD+I+ +NG + Q K L +R+++
Sbjct: 52 DKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTR 111
Query: 428 RPLERTV 434
+ L++ V
Sbjct: 112 QSLQKAV 118
>pdb|3GJ9|A Chain A, Crystal Structure Of Tip-1 In Complex With C-Terminal Of
Kir2.3
pdb|3GJ9|B Chain B, Crystal Structure Of Tip-1 In Complex With C-Terminal Of
Kir2.3
pdb|2L4S|A Chain A, Promiscuous Binding At The Crossroads Of Numerous Cancer
Pathways: Insight From The Binding Of Gip With
Glutaminase L
pdb|2L4T|A Chain A, GipGLUTAMINASE L PEPTIDE COMPLEX
Length = 124
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 36/67 (53%)
Query: 368 NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRD 427
++G++V V G PA + GL+ GD+I+ +NG + Q K L +R+++
Sbjct: 52 DKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTR 111
Query: 428 RPLERTV 434
+ L++ V
Sbjct: 112 QSLQKAV 118
>pdb|3DIW|A Chain A, C-Terminal Beta-Catenin Bound Tip-1 Structure
pdb|3DIW|B Chain B, C-Terminal Beta-Catenin Bound Tip-1 Structure
pdb|3DJ1|A Chain A, Crystal Structure Of Tip-1 Wild Type
pdb|3DJ1|B Chain B, Crystal Structure Of Tip-1 Wild Type
Length = 124
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 36/67 (53%)
Query: 368 NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRD 427
++G++V V G PA + GL+ GD+I+ +NG + Q K L +R+++
Sbjct: 52 DKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTR 111
Query: 428 RPLERTV 434
+ L++ V
Sbjct: 112 QSLQKAV 118
>pdb|1TP3|A Chain A, Pdz3 Domain Of Psd-95 Protein Complexed With Kketpv
Peptide Ligand
pdb|1TP5|A Chain A, Crystal Structure Of Pdz3 Domain Of Psd-95 Protein
Complexed With A Peptide Ligand Kketwv
pdb|1TQ3|A Chain A, Higher Resolution Crystal Structure Of The Third Pdz
Domain Of Post Synaptic Psd-95 Protein
Length = 119
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 348 RELVLCKDASGLIGLRVCA--INEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGY 404
R +V+ + ++GL G + EG+F+ + G PA L G LR GDQILS+NG +
Sbjct: 16 RRIVIHRGSTGL-GFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNA 74
Query: 405 NMKQVHKILKAAPVNNIRVVIRDRPLERT---VTLHRDSSG 442
+ +Q LK A + ++ + +P E + DSSG
Sbjct: 75 SHEQAAIALKNAG-QTVTIIAQYKPEEYSRFEANSRVDSSG 114
>pdb|1UEZ|A Chain A, Solution Structure Of The First Pdz Domain Of Human
Kiaa1526 Protein
Length = 101
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 21/47 (44%), Positives = 29/47 (61%)
Query: 370 GVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAA 416
G++V LVE GS A GLR GDQIL +N +++A + K LK +
Sbjct: 36 GIYVSLVEPGSLAEKEGLRVGDQILRVNDKSLARVTHAEAVKALKGS 82
>pdb|2EGO|A Chain A, Crystal Structure Of Tamalin Pdz Domain
pdb|2EGO|B Chain B, Crystal Structure Of Tamalin Pdz Domain
pdb|2EGN|A Chain A, Crystal Structure Of Tamalin Pdz Domain In Complex With
Mglur5 C-Terminal Peptide
Length = 96
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 26/45 (57%)
Query: 372 FVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAA 416
FV V SPA L GL GD I S+NG V G +++ I+KA+
Sbjct: 40 FVARVHESSPAQLAGLTPGDTIASVNGLNVEGIRHREIVDIIKAS 84
Score = 35.8 bits (81), Expect = 0.061, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 14/85 (16%)
Query: 432 RTVTLHRDSSGHFGF-------HFNKGQIVSLV-------KDSSAARNGLLVNHNILEVN 477
+ +TL + + FGF H + Q V +V + S A GL I VN
Sbjct: 6 KVLTLEKGDNQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAGLTPGDTIASVN 65
Query: 478 GANVVGLKDKELLEAMEKGGSVLTL 502
G NV G++ +E+++ ++ G+VL L
Sbjct: 66 GLNVEGIRHREIVDIIKASGNVLRL 90
>pdb|2EGK|A Chain A, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
pdb|2EGK|B Chain B, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
pdb|2EGK|C Chain C, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
pdb|2EGK|D Chain D, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
Length = 101
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 26/45 (57%)
Query: 372 FVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAA 416
FV V SPA L GL GD I S+NG V G +++ I+KA+
Sbjct: 40 FVARVHESSPAQLAGLTPGDTIASVNGLNVEGIRHREIVDIIKAS 84
Score = 35.0 bits (79), Expect = 0.11, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 14/85 (16%)
Query: 432 RTVTLHRDSSGHFGF-------HFNKGQ------IVSLVKDSSAAR-NGLLVNHNILEVN 477
+ +TL + + FGF H + Q V+ V +SS A+ GL I VN
Sbjct: 6 KVLTLEKGDNQTFGFEIQTYGLHHREEQRVEXVTFVARVHESSPAQLAGLTPGDTIASVN 65
Query: 478 GANVVGLKDKELLEAMEKGGSVLTL 502
G NV G++ +E+++ ++ G+VL L
Sbjct: 66 GLNVEGIRHREIVDIIKASGNVLRL 90
>pdb|1BE9|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95 In
Complex With A C-Terminal Peptide Derived From Cript.
pdb|1BFE|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95
Length = 119
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 5/87 (5%)
Query: 348 RELVLCKDASGLIGLRVCA--INEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGY 404
R +V+ + ++GL G + EG+F+ + G PA L G LR GDQILS+NG +
Sbjct: 16 RRIVIHRGSTGL-GFNIIGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNA 74
Query: 405 NMKQVHKILKAAPVNNIRVVIRDRPLE 431
+ +Q LK A + ++ + +P E
Sbjct: 75 SHEQAAIALKNAG-QTVTIIAQYKPEE 100
>pdb|3KHF|A Chain A, The Crystal Structure Of The Pdz Domain Of Human
Microtubule Associated SerineTHREONINE KINASE 3 (MAST3)
pdb|3KHF|B Chain B, The Crystal Structure Of The Pdz Domain Of Human
Microtubule Associated SerineTHREONINE KINASE 3 (MAST3)
Length = 99
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 27/61 (44%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 376 VERGSPASLVGLRFGDQILSINGETVAGY-NMKQVHKILKAAPVNNIRVVIRDRPLERTV 434
VE GSPA GLR GD I INGE+V G +M V +LK+ ++ +R LE T
Sbjct: 41 VEDGSPAQEAGLRAGDLITHINGESVLGLVHMDVVELLLKSGN----KISLRTTALENTE 96
Query: 435 T 435
T
Sbjct: 97 T 97
>pdb|2OCS|A Chain A, The Crystal Structure Of The First Pdz Domain Of Human
Nherf-2 (slc9a3r2)
Length = 88
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 370 GVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDR 428
G F+ VE GSPA LR GD+++ +NG V G QV + +KA R+++ D+
Sbjct: 26 GQFIRRVEPGSPAEAAALRAGDRLVEVNGVNVEGETHHQVVQRIKAVE-GQTRLLVVDQ 83
>pdb|1U39|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
Length = 80
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 433 TVTLHR-DSSGHFGFHFNKGQIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLE 491
TV + R D GF G I SL++ A R G+ V H I+E+NG +VV ++++
Sbjct: 5 TVLIRRPDLRYQLGFSVQNGIICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVH 64
Query: 492 AM 493
+
Sbjct: 65 IL 66
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 372 FVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAA 416
+C + RG A G+R G +I+ ING++V +++ IL A
Sbjct: 25 IICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSNA 69
>pdb|2Z17|A Chain A, Crystal Sturcture Of Pdz Domain From Human Pleckstrin
Homology, Sec7
Length = 104
Score = 39.3 bits (90), Expect = 0.005, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 30/52 (57%)
Query: 365 CAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAA 416
C+ +C ++ SPA GL+ GD + +ING + G+ KQV +++++
Sbjct: 44 CSSEMFTLICKIQEDSPAHCAGLQAGDVLANINGVSTEGFTYKQVVDLIRSS 95
>pdb|2CSS|A Chain A, Solution Structure Of The Pdz Domain Of Human Kiaa0340
Protein
Length = 121
Score = 39.3 bits (90), Expect = 0.005, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Query: 354 KDASGLIGLRVCAINE------GVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNM 406
KD+ L+GL+V G F+ V++GS A +VG LR GD++L NG+ + G
Sbjct: 33 KDSGALLGLKVVGGKMTDLGRLGAFITKVKKGSLADVVGHLRAGDEVLEWNGKPLPGATN 92
Query: 407 KQVHKILKAAPVNNIRVVIRDRP 429
++V+ I+ + +I RP
Sbjct: 93 EEVYNIILESKSEPQVEIIVSRP 115
>pdb|1Y7N|A Chain A, Solution Structure Of The Second Pdz Domain Of The Human
Neuronal Adaptor X11alpha
Length = 90
Score = 38.9 bits (89), Expect = 0.006, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 433 TVTLHR-DSSGHFGFHFNKGQIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLE 491
TV + R D GF G I SL++ A R G+ V H I+E+NG +VV ++++
Sbjct: 14 TVLIRRPDLRYQLGFSVQNGIICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVH 73
Query: 492 AMEKGGSVLTLTLIPTS 508
+ + + +P +
Sbjct: 74 ILSNAVGEIHMKTMPAA 90
Score = 30.8 bits (68), Expect = 2.1, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 366 AINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAA 416
++ G+ +C + RG A G+R G +I+ ING++V +++ IL A
Sbjct: 29 SVQNGI-ICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSNA 78
>pdb|1X5R|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Glutamate
Receptor Interacting Protein 2
Length = 112
Score = 38.9 bits (89), Expect = 0.007, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 14/79 (17%)
Query: 349 ELVLCKDASGLIGLRVCAINEGVF----------VCLVERGSPASLVGL-RFGDQILSIN 397
E+VLC D GL+ + G+F VC +E SPA GL + GD++LSIN
Sbjct: 18 EVVLCGDPLSGFGLQ---LQGGIFATETLSSPPLVCFIEPDSPAERCGLLQVGDRVLSIN 74
Query: 398 GETVAGYNMKQVHKILKAA 416
G M++ +++L+ A
Sbjct: 75 GIATEDGTMEEANQLLRDA 93
>pdb|4E3B|A Chain A, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
pdb|4E3B|B Chain B, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
Length = 102
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 31/58 (53%)
Query: 368 NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVI 425
++G++V V G PA + GL+ GD+I+ +NG + Q K L +R+++
Sbjct: 42 DKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLV 99
>pdb|3SFJ|A Chain A, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36 Inhibitor Peptide
pdb|3SFJ|C Chain C, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36 Inhibitor Peptide
Length = 104
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 31/58 (53%)
Query: 368 NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVI 425
++G++V V G PA + GL+ GD+I+ +NG + Q K L +R+++
Sbjct: 44 DKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLV 101
>pdb|2KBS|A Chain A, Solution Structure Of Harmonin Pdz2 In Complex With The
Carboxyl Tail Peptide Of Cadherin23
Length = 92
Score = 38.5 bits (88), Expect = 0.009, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 33/55 (60%)
Query: 370 GVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVV 424
G+F+ V+ GS ++ VGL GDQI+ +NG + + K+ +LK++ I +V
Sbjct: 28 GIFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHKEAVNVLKSSRSLTISIV 82
>pdb|2W4F|A Chain A, Crystal Structure Of The First Pdz Domain Of Human Scrib1
Length = 97
Score = 38.5 bits (88), Expect = 0.009, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 32/61 (52%)
Query: 368 NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRD 427
+EG+F+ V PA+ G+R GD++L +NG + G + + L+ A V R+
Sbjct: 33 DEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWRE 92
Query: 428 R 428
R
Sbjct: 93 R 93
Score = 33.5 bits (75), Expect = 0.31, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 449 NKGQIVSLV-KDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTL 502
++G +S V ++ AAR G+ V +LEVNG + G + E +EA+ G+ + +
Sbjct: 33 DEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQM 87
>pdb|2KV8|A Chain A, Solution Structure Ofrgs12 Pdz Domain
Length = 83
Score = 38.5 bits (88), Expect = 0.010, Method: Composition-based stats.
Identities = 21/43 (48%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 371 VFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKIL 413
V C V RGSPA VGLR GDQIL++N V + + V K++
Sbjct: 26 VLSC-VMRGSPADFVGLRAGDQILAVNEINVKKASHEDVVKLI 67
>pdb|2YUY|A Chain A, Solution Structure Of Pdz Domain Of Rho Gtpase Activating
Protein 21
Length = 126
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 371 VFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILK 414
+FV V+ G PA GL GD+I+ +NGE+V G QV +++
Sbjct: 63 IFVKQVKEGGPAFEAGLCTGDRIIKVNGESVIGKTYSQVIALIQ 106
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 45/110 (40%), Gaps = 36/110 (32%)
Query: 432 RTVTLHRDSSGHFGF---HF-------------------NKGQ------------IVSLV 457
+TVTL R S G FGF HF N+G V V
Sbjct: 10 KTVTLKRTSQG-FGFTLRHFIVYPPESAIQFSYKDEENGNRGGKQRNRLEPMDTIFVKQV 68
Query: 458 KDSS-AARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIP 506
K+ A GL I++VNG +V+G +++ ++ + L L+++P
Sbjct: 69 KEGGPAFEAGLCTGDRIIKVNGESVIGKTYSQVIALIQNSDTTLELSVMP 118
>pdb|2DKR|A Chain A, Solution Structure Of The Pdz Domain From Human Lin-7
Homolog B
Length = 93
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 386 GLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRP 429
GL+ GDQ+LS+NG +V G ++ ++LKAA ++++V+R P
Sbjct: 48 GLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQ-GSVKLVVRSGP 90
>pdb|3SHW|A Chain A, Crystal Structure Of Zo-1 Pdz3-Sh3-Guk Supramodule Complex
With Connexin-45 Peptide
Length = 468
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 360 IGLRVCAINE-GVFVCLVERGSPASLVGLRFGDQILSIN 397
+GLR+ N+ G+FV V SPA+ GL GDQIL +N
Sbjct: 13 VGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVN 51
>pdb|2EEH|A Chain A, Solution Structure Of First Pdz Domain Of Pdz Domain
Containing Protein 7
Length = 100
Score = 37.7 bits (86), Expect = 0.015, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 354 KDASGLIGLRVCAINE---GVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVH 410
K +G +G V +E G+FV VE GS A GL GD+I +NG ++ M
Sbjct: 18 KSPAGRLGFSVRGGSEHGLGIFVSKVEEGSSAERAGLCVGDKITEVNGLSLESTTMGSAV 77
Query: 411 KILKAA 416
K+L ++
Sbjct: 78 KVLTSS 83
Score = 32.0 bits (71), Expect = 0.92, Method: Composition-based stats.
Identities = 30/89 (33%), Positives = 40/89 (44%), Gaps = 19/89 (21%)
Query: 433 TVTLHRDSSGHFGFHFNKGQ------IVSLVKD-SSAARNGLLVNHNILEVNGANVVGLK 485
+V + + +G GF G VS V++ SSA R GL V I EVNG +
Sbjct: 13 SVRVEKSPAGRLGFSVRGGSEHGLGIFVSKVEEGSSAERAGLCVGDKITEVNGLS----- 67
Query: 486 DKELLEAMEKGGSVLTLTLIPTSMYQHMM 514
LE+ G +V LT +S HMM
Sbjct: 68 ----LESTTMGSAVKVLT---SSSRLHMM 89
>pdb|1X5Q|A Chain A, Solution Structure Of The First Pdz Domain Of Scribble
Homolog Protein (Hscrib)
Length = 110
Score = 37.7 bits (86), Expect = 0.015, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 28/49 (57%)
Query: 368 NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAA 416
+EG+F+ V PA+ G+R GD++L +NG + G + + L+ A
Sbjct: 45 DEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRGA 93
Score = 32.7 bits (73), Expect = 0.46, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 449 NKGQIVSLV-KDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTL 502
++G +S V ++ AAR G+ V +LEVNG + G + E +EA+ G+ + +
Sbjct: 45 DEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQM 99
>pdb|2KRG|A Chain A, Solution Structure Of Human Sodium HYDROGEN EXCHANGE
Regulatory Factor 1(150-358)
Length = 216
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 432 RTVTLHRDSSGH-FGFHFNK---GQIVSLVK-DSSAARNGLLVNHNILEVNGANVVGLKD 486
R T+ + SG+ F H +K GQ + V DS A +GL I+EVNG + G +
Sbjct: 11 RLCTMKKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQH 70
Query: 487 KELLEAMEKGGSVLTLTLIPTSMYQHMMK 515
+++ A+ GG L ++ + K
Sbjct: 71 GDVVSAIRAGGDETKLLVVDRETDEFFKK 99
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 370 GVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDR 428
G F+ V+ SPA GLR D+I+ +NG + G V ++A + ++++ DR
Sbjct: 34 GQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGG-DETKLLVVDR 91
>pdb|3DJ3|A Chain A, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|B Chain B, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|C Chain C, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|D Chain D, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
Length = 113
Score = 37.7 bits (86), Expect = 0.016, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 31/58 (53%)
Query: 368 NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVI 425
++G++V V G PA + GL+ GD+I+ +NG + Q K L +R+++
Sbjct: 53 DKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLV 110
>pdb|2R4H|B Chain B, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain
Of Human Membrane Associated Guanylate Kinase
pdb|2R4H|A Chain A, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain
Of Human Membrane Associated Guanylate Kinase
pdb|2R4H|C Chain C, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain
Of Human Membrane Associated Guanylate Kinase
Length = 112
Score = 37.4 bits (85), Expect = 0.019, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 9/80 (11%)
Query: 433 TVTLHRDSSGHFGFHFNKGQ-------IVSLVKDSSAARNG-LLVNHNILEVNGANVVGL 484
TV L R + G FGF G+ ++ L +D A R+G + + ILE+NG +
Sbjct: 27 TVELERGAKG-FGFSLRGGREYNMDLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNM 85
Query: 485 KDKELLEAMEKGGSVLTLTL 504
K +E ++ GG + L L
Sbjct: 86 KHSRAIELIKNGGRRVRLFL 105
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 368 NEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKI 412
N ++V + PA G +R GD+IL INGET NMK I
Sbjct: 48 NMDLYVLRLAEDGPAERSGKMRIGDEILEINGETTK--NMKHSRAI 91
>pdb|1X5N|A Chain A, Solution Structure Of The Second Pdz Domain Of Harmonin
Protein
Length = 114
Score = 37.4 bits (85), Expect = 0.020, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 33/55 (60%)
Query: 370 GVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVV 424
G+F+ V+ GS ++ VGL GDQI+ +NG + + K+ +LK++ I +V
Sbjct: 42 GIFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHKEAVNVLKSSRSLTISIV 96
>pdb|3NGH|A Chain A, Molecular Analysis Of The Interaction Of The Hdl Receptor
Sr-Bi With The Adaptor Protein Pdzk1
pdb|3NGH|B Chain B, Molecular Analysis Of The Interaction Of The Hdl Receptor
Sr-Bi With The Adaptor Protein Pdzk1
Length = 106
Score = 37.4 bits (85), Expect = 0.022, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 346 GIRELVLCKDASGLIG--LRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAG 403
G RE L K G LR+ +G + ++E GSPA GL GD++L ING V
Sbjct: 1 GPRESKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDK 60
Query: 404 YNMKQVHKILKAAPVNNIRVVIRD 427
QV ++++ + N++ +++ D
Sbjct: 61 EEHAQVVELVRKSG-NSVTLLVLD 83
Score = 33.5 bits (75), Expect = 0.30, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
Query: 432 RTVTLHRDSSGHFGFHF-----NKGQIVSLVKDSSAA-RNGLLVNHNILEVNGANVVGLK 485
R L + ++GF G ++ ++++ S A + GLL +L +NG V +
Sbjct: 3 RESKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEE 62
Query: 486 DKELLEAMEKGGSVLTLTLIPTSMYQHMMK 515
+++E + K G+ +TL ++ Y+ +K
Sbjct: 63 HAQVVELVRKSGNSVTLLVLDGDSYEKAVK 92
>pdb|1ZUB|A Chain A, Solution Structure Of The Rim1alpha Pdz Domain In Complex
With An Elks1b C-Terminal Peptide
Length = 114
Score = 37.4 bits (85), Expect = 0.023, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 7/67 (10%)
Query: 354 KDASGLIGLRVCAINE------GVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNM 406
K++ L+GL+V G F+ V++GS A +VG LR GD++L NG+ + G
Sbjct: 33 KESGALLGLKVVGGKMTDLGRLGAFITKVKKGSLADVVGHLRAGDEVLEWNGKPLPGATN 92
Query: 407 KQVHKIL 413
++V+ I+
Sbjct: 93 EEVYNII 99
>pdb|1WFG|A Chain A, Pdz Domain Of Human Rim2b
Length = 131
Score = 37.0 bits (84), Expect = 0.024, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 8/80 (10%)
Query: 354 KDASGLIGLRVCA--INEG----VFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNM 406
+D+ ++GL+V + E F+ V++GS A VG LR GD++L NG + G
Sbjct: 44 RDSGAMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATF 103
Query: 407 KQVHK-ILKAAPVNNIRVVI 425
++V+ IL++ P + +V+
Sbjct: 104 EEVYNIILESKPEPQVELVV 123
>pdb|3TSW|A Chain A, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
pdb|3TSW|C Chain C, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
pdb|3TSW|D Chain D, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
pdb|3TSZ|A Chain A, Crystal Structure Of Pdz3-Sh3-Guk Core Module From Human
Zo-1 In Complex With 12mer Peptide From Human Jam-A
Cytoplasmic Tail
Length = 391
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 360 IGLRVCAINE-GVFVCLVERGSPASLVGLRFGDQILSIN 397
+GLR+ N+ G+FV V SPA+ GL GDQIL +N
Sbjct: 21 VGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVN 59
>pdb|2W7R|A Chain A, Structure Of The Pdz Domain Of Human Microtubule
Associated Serine-Threonine Kinase 4
pdb|2W7R|B Chain B, Structure Of The Pdz Domain Of Human Microtubule
Associated Serine-Threonine Kinase 4
Length = 98
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 372 FVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLE 431
V VE GSPA GL+ GD I INGE V G +V ++L + +V I P E
Sbjct: 36 IVWNVEEGSPACQAGLKAGDLITHINGEPVHGLVHTEVIELLLKS---GNKVSITTTPFE 92
Query: 432 RTVT 435
T T
Sbjct: 93 NTET 96
>pdb|1PDR|A Chain A, Crystal Structure Of The Third Pdz Domain From The Human
Homolog Of Discs Large Protein
Length = 99
Score = 36.6 bits (83), Expect = 0.032, Method: Composition-based stats.
Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 5/92 (5%)
Query: 343 VTNGIRELVLCKDASGLIGLRVCA--INEGVFVCLVERGSPASLVG-LRFGDQILSINGE 399
+T R++VL + ++GL G + EG+F+ + G PA L G LR GD+I+S+N
Sbjct: 4 ITREPRKVVLHRGSTGL-GFNIVGGEDGEGIFISFILAGGPADLSGELRKGDRIISVNSV 62
Query: 400 TVAGYNMKQVHKILKAAPVNNIRVVIRDRPLE 431
+ + +Q LK A + +V + RP E
Sbjct: 63 DLRAASHEQAAAALKNAG-QAVTIVAQYRPEE 93
>pdb|4F8K|A Chain A, Molecular Analysis Of The Interaction Between The
Prostacyclin Receptor And The First Pdz Domain Of Pdzk1
pdb|4F8K|B Chain B, Molecular Analysis Of The Interaction Between The
Prostacyclin Receptor And The First Pdz Domain Of Pdzk1
Length = 109
Score = 36.6 bits (83), Expect = 0.035, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 362 LRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNI 421
LR+ +G + ++E GSPA GL GD++L ING V QV ++++ + N++
Sbjct: 20 LRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSG-NSV 78
Query: 422 RVVIRD 427
+++ D
Sbjct: 79 TLLVLD 84
Score = 33.5 bits (75), Expect = 0.30, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
Query: 432 RTVTLHRDSSGHFGFHF-----NKGQIVSLVKDSSAA-RNGLLVNHNILEVNGANVVGLK 485
R L + ++GF G ++ ++++ S A + GLL +L +NG V +
Sbjct: 4 RESKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEE 63
Query: 486 DKELLEAMEKGGSVLTLTLIPTSMYQHMMK 515
+++E + K G+ +TL ++ Y+ +K
Sbjct: 64 HAQVVELVRKSGNSVTLLVLDGDSYEKAVK 93
>pdb|2EDZ|A Chain A, Solution Structures Of The Pdz Domain Of Mus Musculus Pdz
Domain-Containing Protein 1
Length = 114
Score = 36.6 bits (83), Expect = 0.035, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 362 LRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNI 421
LR+ +G + ++E GSPA GL GD++L ING V QV ++++ + N++
Sbjct: 31 LRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSG-NSV 89
Query: 422 RVVIRD 427
+++ D
Sbjct: 90 TLLVLD 95
Score = 33.9 bits (76), Expect = 0.23, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
Query: 432 RTVTLHRDSSGHFGFHF-----NKGQIVSLVKDSSAA-RNGLLVNHNILEVNGANVVGLK 485
R L + ++GF G ++ ++++ S A + GLL +L +NG V +
Sbjct: 15 RECKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEE 74
Query: 486 DKELLEAMEKGGSVLTLTLIPTSMYQHMMK 515
+++E + K G+ +TL ++ Y+ +K
Sbjct: 75 HAQVVELVRKSGNSVTLLVLDGDSYEKAVK 104
>pdb|2KQF|A Chain A, Solution Structure Of Mast205-Pdz Complexed With The
C-Terminus Of A Rabies Virus G Protein
pdb|2KYL|A Chain A, Solution Structure Of Mast2-Pdz Complexed With The
C-Terminus Of Pten
Length = 96
Score = 36.6 bits (83), Expect = 0.036, Method: Composition-based stats.
Identities = 26/57 (45%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 376 VERGSPASLVGLRFGDQILSINGETVAGY-NMKQVHKILKAAPVNNIRVVIRDRPLE 431
VE G PAS GLR GD I +NGE V G + + V ILK+ +V I PLE
Sbjct: 43 VEDGGPASEAGLRQGDLITHVNGEPVHGLVHTEVVELILKSGN----KVAISTTPLE 95
>pdb|2I0I|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I0I|B Chain B, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I0I|C Chain C, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 85
Score = 36.6 bits (83), Expect = 0.039, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 343 VTNGIRELVLCKDASGLIGLRVCA--INEGVFVCLVERGSPASLVG-LRFGDQILSIN 397
+T R++VL + ++GL G + EG+F+ + G PA L G LR GD+I+S+N
Sbjct: 1 ITREPRKVVLHRGSTGL-GFNIVGGEDGEGIFISFILAGGPADLSGELRKGDRIISVN 57
>pdb|3TSW|B Chain B, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
Length = 194
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 360 IGLRVCAINE-GVFVCLVERGSPASLVGLRFGDQILSIN 397
+GLR+ N+ G+FV V SPA+ GL GDQIL +N
Sbjct: 14 VGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVN 52
>pdb|3CS0|A Chain A, Crystal Structure Of Degp24
Length = 448
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 368 NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAP 417
++GV V V+ G+PA+ +GL+ GD I+ N + V N+ ++ K+L + P
Sbjct: 382 DQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAV--KNIAELRKVLDSKP 429
>pdb|1KY9|A Chain A, Crystal Structure Of Degp (Htra)
pdb|1KY9|B Chain B, Crystal Structure Of Degp (Htra)
pdb|3OU0|A Chain A, Re-Refined 3cs0
Length = 448
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 368 NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAP 417
++GV V V+ G+PA+ +GL+ GD I+ N + V N+ ++ K+L + P
Sbjct: 382 DQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAV--KNIAELRKVLDSKP 429
>pdb|3MH7|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 368 NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAP 417
++GV V V+ G+PA+ +GL+ GD I+ N + V N+ ++ K+L + P
Sbjct: 382 DQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAV--KNIAELRKVLDSKP 429
>pdb|3K1R|A Chain A, Structure Of Harmonin Npdz1 In Complex With The Sam-Pbm Of
Sans
Length = 192
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 33/54 (61%)
Query: 370 GVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRV 423
G+F+ + +G A VGL+ GD+I+ ING +++ ++V +++ +I+V
Sbjct: 111 GLFISHLIKGGQADSVGLQVGDEIVRINGYSISSCTHEEVINLIRTEKTVSIKV 164
>pdb|3OTP|A Chain A, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|B Chain B, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|C Chain C, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|D Chain D, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|E Chain E, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|F Chain F, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
Length = 459
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 368 NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAP 417
++GV V V+ G+PA+ +GL+ GD I+ N + V N+ ++ K+L + P
Sbjct: 382 DQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAV--KNIAELRKVLDSKP 429
>pdb|4A8D|A Chain A, Degp Dodecamer With Bound Omp
pdb|4A8D|B Chain B, Degp Dodecamer With Bound Omp
pdb|4A8D|C Chain C, Degp Dodecamer With Bound Omp
pdb|4A8D|D Chain D, Degp Dodecamer With Bound Omp
pdb|4A8D|E Chain E, Degp Dodecamer With Bound Omp
pdb|4A8D|F Chain F, Degp Dodecamer With Bound Omp
pdb|4A8D|G Chain G, Degp Dodecamer With Bound Omp
pdb|4A8D|H Chain H, Degp Dodecamer With Bound Omp
pdb|4A8D|I Chain I, Degp Dodecamer With Bound Omp
pdb|4A8D|J Chain J, Degp Dodecamer With Bound Omp
pdb|4A8D|K Chain K, Degp Dodecamer With Bound Omp
pdb|4A8D|L Chain L, Degp Dodecamer With Bound Omp
Length = 448
Score = 36.2 bits (82), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 368 NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAP 417
++GV V V+ G+PA+ +GL+ GD I+ N + V N+ ++ K+L + P
Sbjct: 382 DQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAV--KNIAELRKVLDSKP 429
>pdb|2ZLE|A Chain A, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|B Chain B, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|C Chain C, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|E Chain E, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|F Chain F, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|G Chain G, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|H Chain H, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|I Chain I, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|J Chain J, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|K Chain K, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|L Chain L, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|M Chain M, Cryo-Em Structure Of Degp12OMP
Length = 448
Score = 36.2 bits (82), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 368 NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAP 417
++GV V V+ G+PA+ +GL+ GD I+ N + V N+ ++ K+L + P
Sbjct: 382 DQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAV--KNIAELRKVLDSKP 429
>pdb|3MH5|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH5|B Chain B, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH6|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 36.2 bits (82), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 368 NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAP 417
++GV V V+ G+PA+ +GL+ GD I+ N + V N+ ++ K+L + P
Sbjct: 382 DQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAV--KNIAELRKVLDSKP 429
>pdb|2DMZ|A Chain A, Solution Structure Of The Third Pdz Domain Of Human Inad-
Like Protein
Length = 129
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 455 SLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLI 505
S++ S+A NG + VN I+ V+G N+ G + +++E + G V+ LTL+
Sbjct: 52 SVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEVLRNAGQVVHLTLV 103
>pdb|3MH4|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH4|B Chain B, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 368 NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAP 417
++GV V V+ G+PA+ +GL+ GD I+ N + V N+ ++ K+L + P
Sbjct: 382 DQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAV--KNIAELRKVLDSKP 429
>pdb|3R69|A Chain A, Molecular Analysis Of The Interaction Of The Hdl-Receptor
Sr-Bi With The Pdz3 Domain Of Its Adaptor Protein Pdzk1
pdb|3R69|B Chain B, Molecular Analysis Of The Interaction Of The Hdl-Receptor
Sr-Bi With The Pdz3 Domain Of Its Adaptor Protein Pdzk1
Length = 89
Score = 35.8 bits (81), Expect = 0.061, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Query: 432 RTVTLHRDSSGHFGFHF-----NKGQIVSLVKDSSAARNGLLVNHN-ILEVNGANVVGLK 485
R V + + S+G +GF+ KGQI+ ++ S A L N++ ++ VNG +V L
Sbjct: 4 RVVVIKKGSNG-YGFYLRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALD 62
Query: 486 DKELLEAMEKGGSVLTLTLI 505
++E + KGG TL ++
Sbjct: 63 HDGVVEMIRKGGDQTTLLVL 82
Score = 31.2 bits (69), Expect = 1.4, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 348 RELVLCKDASGL-IGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNM 406
R +V+ K ++G LR +G + +E GSPA GL+ D ++++NG++V +
Sbjct: 4 RVVVIKKGSNGYGFYLRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDH 63
Query: 407 KQVHKILK 414
V ++++
Sbjct: 64 DGVVEMIR 71
>pdb|2HE4|A Chain A, The Crystal Structure Of The Second Pdz Domain Of Human
Nherf-2 (Slc9a3r2) Interacting With A Mode 1 Pdz Binding
Motif
Length = 90
Score = 35.8 bits (81), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 444 FGFHFNK---GQIVSLVKDSS-AARNGLLVNHNILEVNGANVVGLKDKELLEAME 494
F H +K GQ + V S AAR+GL ++EVNG NV GL+ E++ +++
Sbjct: 19 FNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIK 73
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%)
Query: 370 GVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKA 415
G ++ V+ GSPA+ GLR D+++ +NG+ V G +V +KA
Sbjct: 29 GQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKA 74
>pdb|2EEI|A Chain A, Solution Structure Of Second Pdz Domain Of Pdz Domain
Containing Protein 1
Length = 106
Score = 35.8 bits (81), Expect = 0.061, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 442 GHFGFHFNKGQ------IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEK 495
G +GF Q + + A R G+L + +++EVNG NV +E++E ++K
Sbjct: 19 GSYGFSLKTVQGKKGVYMTDITPQGVAMRAGVLADDHLIEVNGENVEDASHEEVVEKVKK 78
Query: 496 GGSVLTLTLI 505
GS + L+
Sbjct: 79 SGSRVMFLLV 88
>pdb|3TSV|A Chain A, Crystal Structure Of The Third Pdz Domain Of The Human
Zo-1 Maguk Protein
Length = 124
Score = 35.4 bits (80), Expect = 0.080, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 360 IGLRVCAINE-GVFVCLVERGSPASLVGLRFGDQILSIN 397
+GLR+ N+ G+FV V SPA+ GL GDQIL +N
Sbjct: 41 VGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVN 79
>pdb|3SHU|A Chain A, Crystal Structure Of Zo-1 Pdz3
pdb|3SHU|B Chain B, Crystal Structure Of Zo-1 Pdz3
Length = 95
Score = 35.4 bits (80), Expect = 0.080, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 360 IGLRVCAINE-GVFVCLVERGSPASLVGLRFGDQILSIN 397
+GLR+ N+ G+FV V SPA+ GL GDQIL +N
Sbjct: 16 VGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVN 54
>pdb|3R68|A Chain A, Molecular Analysis Of The Pdz3 Domain Of Pdzk1
Length = 95
Score = 35.4 bits (80), Expect = 0.084, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 50/93 (53%), Gaps = 5/93 (5%)
Query: 348 RELVLCKDASGL-IGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNM 406
R +V+ K ++G LR +G + +E GSPA GL+ D ++++NG++V +
Sbjct: 7 RVVVIKKGSNGYGFYLRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDH 66
Query: 407 KQVHKILKAAPVNNIRVVIRDRPLERTVTLHRD 439
V ++++ + +++ D+ LER HRD
Sbjct: 67 DGVVEMIRKGG-DQTTLLVLDKELERP---HRD 95
Score = 34.7 bits (78), Expect = 0.14, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Query: 432 RTVTLHRDSSGHFGFHF-----NKGQIVSLVKDSSAARNGLLVNHN-ILEVNGANVVGLK 485
R V + + S+G +GF+ KGQI+ ++ S A L N++ ++ VNG +V L
Sbjct: 7 RVVVIKKGSNG-YGFYLRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALD 65
Query: 486 DKELLEAMEKGGSVLTLTLI 505
++E + KGG TL ++
Sbjct: 66 HDGVVEMIRKGGDQTTLLVL 85
>pdb|3QJM|A Chain A, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJM|B Chain B, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|A Chain A, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|B Chain B, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|C Chain C, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|D Chain D, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|E Chain E, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|F Chain F, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|G Chain G, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|H Chain H, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
Length = 115
Score = 35.0 bits (79), Expect = 0.095, Method: Composition-based stats.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 19/102 (18%)
Query: 431 ERTVTLHRDSSGHFGF------------------HFNKGQIVSLVKDSSAA-RNGLLVNH 471
E+TV L + S FGF F Q + V + A R GL +
Sbjct: 8 EKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGD 67
Query: 472 NILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPTSMYQHM 513
++EVNG NVV + ++++ + +GG+ L + ++ + + M
Sbjct: 68 FLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTRHPDM 109
Score = 29.6 bits (65), Expect = 4.6, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 376 VERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILK 414
V+ G A GLR GD ++ +NG+ V +QV +++
Sbjct: 52 VDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIR 90
>pdb|1Q3O|A Chain A, Crystal Structure Of The Shank Pdz-ligand Complex Reveals
A Class I Pdz Interaction And A Novel Pdz-pdz
Dimerization
pdb|1Q3O|B Chain B, Crystal Structure Of The Shank Pdz-ligand Complex Reveals
A Class I Pdz Interaction And A Novel Pdz-pdz
Dimerization
pdb|1Q3P|A Chain A, Crystal Structure Of The Shank Pdz-Ligand Complex Reveals
A Class I Pdz Interaction And A Novel Pdz-Pdz
Dimerization
pdb|1Q3P|B Chain B, Crystal Structure Of The Shank Pdz-Ligand Complex Reveals
A Class I Pdz Interaction And A Novel Pdz-Pdz
Dimerization
Length = 109
Score = 35.0 bits (79), Expect = 0.11, Method: Composition-based stats.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 19/102 (18%)
Query: 431 ERTVTLHRDSSGHFGF------------------HFNKGQIVSLVKDSSAA-RNGLLVNH 471
E+TV L + S FGF F Q + V + A R GL +
Sbjct: 8 EKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGD 67
Query: 472 NILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPTSMYQHM 513
++EVNG NVV + ++++ + +GG+ L + ++ + + M
Sbjct: 68 FLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTRHPDM 109
Score = 29.6 bits (65), Expect = 4.9, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 376 VERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILK 414
V+ G A GLR GD ++ +NG+ V +QV +++
Sbjct: 52 VDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIR 90
>pdb|1UF1|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Kiaa1526 Protein
Length = 128
Score = 35.0 bits (79), Expect = 0.11, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 28/47 (59%)
Query: 370 GVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAA 416
G+++ V+ GS A GL+ GDQIL +NG + + ++LK++
Sbjct: 47 GIYITGVDPGSEAEGSGLKVGDQILEVNGRSFLNILHDEAVRLLKSS 93
>pdb|1VA8|A Chain A, Solution Structure Of The Pdz Domain Of Pals1 Protein
Length = 113
Score = 35.0 bits (79), Expect = 0.11, Method: Composition-based stats.
Identities = 38/131 (29%), Positives = 55/131 (41%), Gaps = 27/131 (20%)
Query: 379 GSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHR 438
GS + R + I GETV ++ +I KA RD PL TV
Sbjct: 4 GSSGPITDERVYESIGHYGGETV------KIVRIEKA----------RDIPLGATVRNEM 47
Query: 439 DSSGHFGFHFNKGQIVSLVKDSSAARNGLLVNHN-ILEVNGANVVGLKDKELLEAMEKGG 497
DS I +VK +A ++GLL + +LE+NG + G E+ + +
Sbjct: 48 DSV----------IISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMH 97
Query: 498 SVLTLTLIPTS 508
LT LIP+S
Sbjct: 98 GTLTFVLIPSS 108
>pdb|2D90|A Chain A, Solution Structure Of The Third Pdz Domain Of Pdz Domain
Containing Protein 1
Length = 102
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Query: 432 RTVTLHRDSSGHFGFHF-----NKGQIVSLVKDSS-AARNGLLVNHNILEVNGANVVGLK 485
R V + + S+G +GF+ KGQI+ ++ S A GL N ++ VNG +V L
Sbjct: 8 RVVVIKKGSNG-YGFYLRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALD 66
Query: 486 DKELLEAMEKGGSVLTLTLI 505
++E + KGG TL ++
Sbjct: 67 HDGVVEMIRKGGDQTTLLVL 86
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 362 LRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNI 421
LR +G + +E GSPA GL+ D ++++NG++V + V ++++ +
Sbjct: 23 LRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRKGG-DQT 81
Query: 422 RVVIRDRPLERTVTLHRDSSG 442
+++ D+ E +L SSG
Sbjct: 82 TLLVLDKEAESIYSLSGPSSG 102
>pdb|1ZOK|A Chain A, Pdz1 Domain Of Synapse Associated Protein 97
Length = 93
Score = 34.7 bits (78), Expect = 0.13, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 14/82 (17%)
Query: 434 VTLHRDSSGHFGFHFNKGQ------------IVSLVKDSSAARNGLL-VNHNILEVNGAN 480
+TL R +SG GF G I ++ +AA++G L VN IL VN A+
Sbjct: 5 ITLERGNSG-LGFSIAGGTDNPHIGDDSSIFITKIITGGAAAQDGRLRVNDCILRVNEAD 63
Query: 481 VVGLKDKELLEAMEKGGSVLTL 502
V + + +EA+++ GS++ L
Sbjct: 64 VRDVTHSKAVEALKEAGSIVRL 85
>pdb|2JXO|A Chain A, Structure Of The Second Pdz Domain Of Nherf-1
Length = 98
Score = 34.7 bits (78), Expect = 0.13, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 7/83 (8%)
Query: 428 RPLERTVTLHRDSSGH-FGFHFNK---GQIV-SLVKDSSAARNGLLVNHNILEVNGANVV 482
RP R T+ + SG+ F H +K GQ + S+ DS A +GL I+EVNG +
Sbjct: 9 RP--RLCTMKKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCME 66
Query: 483 GLKDKELLEAMEKGGSVLTLTLI 505
G + +++ A+ GG L ++
Sbjct: 67 GKQHGDVVSAIRAGGDETKLLVV 89
Score = 29.6 bits (65), Expect = 4.4, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 370 GVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDR 428
G F+ V+ SPA GLR D+I+ +NG + G V ++A + ++++ DR
Sbjct: 34 GQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGG-DETKLLVVDR 91
>pdb|1WFV|A Chain A, Solution Structure Of The Fifth Pdz Domain Of Human
Membrane Associated Guanylate Kinase Inverted-2
(Kiaa0705 Protein)
Length = 103
Score = 34.3 bits (77), Expect = 0.17, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 9/80 (11%)
Query: 433 TVTLHRDSSGHFGFHFNKGQ-------IVSLVKDSSAARNGLL-VNHNILEVNGANVVGL 484
TV + + + G FGF G+ ++ L +D A RNG + V I+E+NG + +
Sbjct: 14 TVDMEKGAKG-FGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDM 72
Query: 485 KDKELLEAMEKGGSVLTLTL 504
+E ++ GG + L L
Sbjct: 73 THARAIELIKSGGRRVRLLL 92
>pdb|3L4F|D Chain D, Crystal Structure Of Betapix Coiled-Coil Domain And Shank
Pdz Complex
Length = 132
Score = 34.3 bits (77), Expect = 0.20, Method: Composition-based stats.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 19/102 (18%)
Query: 431 ERTVTLHRDSSGHFGF------------------HFNKGQIVSLVKDSSAA-RNGLLVNH 471
E+TV L + S FGF F Q + V + A R GL +
Sbjct: 28 EKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGD 87
Query: 472 NILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPTSMYQHM 513
++EVNG NVV + ++++ + +GG+ L + ++ + + M
Sbjct: 88 FLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTRHPDM 129
Score = 28.9 bits (63), Expect = 6.7, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 376 VERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILK 414
V+ G A GLR GD ++ +NG+ V +QV +++
Sbjct: 72 VDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIR 110
>pdb|2OZF|A Chain A, The Crystal Structure Of The 2nd Pdz Domain Of The Human
Nherf-1 (Slc9a3r1)
Length = 92
Score = 34.3 bits (77), Expect = 0.20, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 7/83 (8%)
Query: 428 RPLERTVTLHRDSSGH-FGFHFNK---GQIV-SLVKDSSAARNGLLVNHNILEVNGANVV 482
RP R T+ + SG+ F H +K GQ + S+ DS A +GL I+EVNG +
Sbjct: 4 RP--RLCTMKKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCME 61
Query: 483 GLKDKELLEAMEKGGSVLTLTLI 505
G + +++ A+ GG L ++
Sbjct: 62 GKQHGDVVSAIRAGGDETKLLVV 84
Score = 30.8 bits (68), Expect = 2.1, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 370 GVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRP 429
G F+ V+ SPA GLR D+I+ +NG + G V ++A + ++++ DR
Sbjct: 29 GQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGG-DETKLLVVDRE 87
Query: 430 LERTV 434
E ++
Sbjct: 88 TETSL 92
>pdb|3HPM|A Chain A, Oxidized Dimeric Pick1 Pdz C46g Mutant In Complex With The
C Tail Peptide Of Glur2
pdb|3HPM|B Chain B, Oxidized Dimeric Pick1 Pdz C46g Mutant In Complex With The
C Tail Peptide Of Glur2
Length = 111
Score = 33.9 bits (76), Expect = 0.21, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Query: 349 ELVLCKDASGLIGLRVCAINE---GVFVCLVERGSPASLVG-LRFGDQILSINGETVAGY 404
++ L KDA LIG+ + + G+++ V +PA+L G + GD+I +NG ++ G
Sbjct: 8 KVTLQKDAQNLIGISIGGGAQYCPGLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGK 67
Query: 405 NMKQVHKILK 414
+V K+++
Sbjct: 68 TKVEVAKMIQ 77
>pdb|2OMJ|A Chain A, Solution Structure Of Larg Pdz Domain
pdb|2OS6|A Chain A, Solution Structure Of Larg Pdz Domain In Complex With C-
Terminal Octa-Peptide Of Plexin B1
Length = 89
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 348 RELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMK 407
R +++ KD +G GL V N VFV V+ A G++ GD+I+ +NG V N
Sbjct: 9 RCVIIQKDDNGF-GLTVSGDNP-VFVQSVKEDGAAMRAGVQTGDRIIKVNGTLVTHSNHL 66
Query: 408 QVHKILKAAPVNNIRVVIRDRP 429
+V K++K+ + + ++ RP
Sbjct: 67 EVVKLIKSGSY--VALTVQGRP 86
>pdb|1IHJ|A Chain A, Crystal Structure Of The N-Terminal Pdz Domain Of Inad In
Complex With A Norpa C-Terminal Peptide
pdb|1IHJ|B Chain B, Crystal Structure Of The N-Terminal Pdz Domain Of Inad In
Complex With A Norpa C-Terminal Peptide
Length = 98
Score = 33.9 bits (76), Expect = 0.26, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 370 GVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAA 416
G+F+ + SPA L G L+ GD+ILS+NG+ V + V ++K A
Sbjct: 38 GIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEA 85
>pdb|3QDO|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) Fused To The Gly-Gly Linker Followed By
C-Terminal (Eseskv) Of Girk3
Length = 109
Score = 33.5 bits (75), Expect = 0.27, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 27/53 (50%)
Query: 373 VCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVI 425
V V G A G+R GD+IL +NG V G KQV +++A I V+
Sbjct: 47 VSAVLPGGAADRAGVRKGDRILEVNGVNVEGATHKQVVDLIRAGEKELILTVL 99
Score = 32.7 bits (73), Expect = 0.47, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 30/54 (55%)
Query: 452 QIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLI 505
+ +++ +A R G+ ILEVNG NV G K++++ + G L LT++
Sbjct: 46 HVSAVLPGGAADRAGVRKGDRILEVNGVNVEGATHKQVVDLIRAGEKELILTVL 99
>pdb|3QE1|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) Fused To The C-Terminal Residues (Eseskv) Of
Girk3
Length = 107
Score = 33.5 bits (75), Expect = 0.28, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 27/53 (50%)
Query: 373 VCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVI 425
V V G A G+R GD+IL +NG V G KQV +++A I V+
Sbjct: 47 VSAVLPGGAADRAGVRKGDRILEVNGVNVEGATHKQVVDLIRAGEKELILTVL 99
Score = 32.7 bits (73), Expect = 0.47, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 30/54 (55%)
Query: 452 QIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLI 505
+ +++ +A R G+ ILEVNG NV G K++++ + G L LT++
Sbjct: 46 HVSAVLPGGAADRAGVRKGDRILEVNGVNVEGATHKQVVDLIRAGEKELILTVL 99
>pdb|3QGL|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|B Chain B, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|C Chain C, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|D Chain D, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|E Chain E, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
Length = 101
Score = 33.5 bits (75), Expect = 0.29, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 27/53 (50%)
Query: 373 VCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVI 425
V V G A G+R GD+IL +NG V G KQV +++A I V+
Sbjct: 47 VSAVLPGGAADRAGVRKGDRILEVNGVNVEGATHKQVVDLIRAGEKELILTVL 99
Score = 32.7 bits (73), Expect = 0.48, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 30/54 (55%)
Query: 452 QIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLI 505
+ +++ +A R G+ ILEVNG NV G K++++ + G L LT++
Sbjct: 46 HVSAVLPGGAADRAGVRKGDRILEVNGVNVEGATHKQVVDLIRAGEKELILTVL 99
>pdb|2DAZ|A Chain A, Solution Structure Of The 7th Pdz Domain Of Inad-Like
Protein
Length = 124
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 352 LCKDASGLIGLRVCAINE----GVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNM 406
L KD +GL GL + + +FV + PA+ G +R GD++L IN + + G +
Sbjct: 31 LEKDKNGL-GLSLAGNKDRSRMSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSH 89
Query: 407 KQVHKILKAAPVNNIRVVIRD 427
+ I+K AP V IR+
Sbjct: 90 QNASAIIKTAPSKVKLVFIRN 110
>pdb|3PS4|A Chain A, Pdz Domain From Human Microtubule-Associated
SerineTHREONINE-Protein Kinase 1
pdb|3PS4|B Chain B, Pdz Domain From Human Microtubule-Associated
SerineTHREONINE-Protein Kinase 1
pdb|3PS4|C Chain C, Pdz Domain From Human Microtubule-Associated
SerineTHREONINE-Protein Kinase 1
pdb|3PS4|D Chain D, Pdz Domain From Human Microtubule-Associated
SerineTHREONINE-Protein Kinase 1
Length = 102
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 50/112 (44%), Gaps = 15/112 (13%)
Query: 326 TMIAPLSSSGSGLKKAYVTNGIRELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLV 385
+M +P++ SG K + IR V D V +++ V VE G PA
Sbjct: 4 SMRSPITIQRSGKKYGFTLRAIR--VYMGDTD------VYSVHH--IVWHVEEGGPAQEA 53
Query: 386 GLRFGDQILSINGETVAGY-NMKQVHKILKAAPVNNIRVVIRDRPLERTVTL 436
GL GD I +NGE V G + + V ILK+ +V + P E T +L
Sbjct: 54 GLCAGDLITHVNGEPVHGMVHPEVVELILKSGN----KVAVTTTPFENTQSL 101
>pdb|2KJD|A Chain A, Solution Structure Of Extended Pdz2 Domain From Nherf1
(150- 270)
Length = 128
Score = 33.1 bits (74), Expect = 0.41, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 428 RPLERTVTLHRDSSGH-FGFHFNKGQ----IVSLVKDSSAARNGLLVNHNILEVNGANVV 482
RP R T+ + SG+ F H +K + I S+ DS A +GL I+EVNG +
Sbjct: 9 RP--RLCTMKKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCME 66
Query: 483 GLKDKELLEAMEKGGSVLTLTLI 505
G + +++ A+ GG L ++
Sbjct: 67 GKQHGDVVSAIRAGGDETKLLVV 89
Score = 28.9 bits (63), Expect = 8.1, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Query: 370 GVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRP 429
G F+ V+ SPA GLR D+I+ +NG + G V ++A + ++++ DR
Sbjct: 34 GQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGG-DETKLLVVDRE 92
Query: 430 LE------RTVTLHRDSSGHFGFHFNKGQI 453
+ R + +G F G+I
Sbjct: 93 TDEFFKKCRVIPSQEHLNGPLPVPFTNGEI 122
>pdb|3RL7|B Chain B, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|A Chain A, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|C Chain C, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|D Chain D, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|E Chain E, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|F Chain F, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
Length = 107
Score = 33.1 bits (74), Expect = 0.44, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 14/82 (17%)
Query: 434 VTLHRDSSGHFGFHFNKGQ------------IVSLVKDSSAARNGLL-VNHNILEVNGAN 480
+TL R +SG GF G I ++ +AA++G L VN IL VN +
Sbjct: 15 ITLERGNSG-LGFSIAGGTDNPHIGDDSSIFITKIITGGAAAQDGRLRVNDCILRVNEVD 73
Query: 481 VVGLKDKELLEAMEKGGSVLTL 502
V + + +EA+++ GS++ L
Sbjct: 74 VRDVTHSKAVEALKEAGSIVRL 95
>pdb|2EAQ|A Chain A, Crystal Structure Of Pdz Domain Of Kiaa0858 (Lim), Ms0793
From Homo Sapiens
Length = 90
Score = 32.7 bits (73), Expect = 0.48, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 370 GVFVCLVERGSPASLVGLRFGDQILSINGETVAGYN 405
G+FV VE GSPA L+ D+I++IN T YN
Sbjct: 29 GIFVASVEAGSPAEFSQLQVDDEIIAIN-NTKFSYN 63
>pdb|3QIK|A Chain A, Crystal Structure Of The First Pdz Domain Of Prex1
Length = 101
Score = 32.7 bits (73), Expect = 0.55, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 368 NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAA 416
N+ V V V+RGS A + GL+ G +I SIN + V +V IL +
Sbjct: 38 NKAVVVKSVQRGSLAEVAGLQVGRKIYSINEDLVFLRPFSEVESILNQS 86
>pdb|1U38|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
pdb|1U37|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
Length = 89
Score = 32.7 bits (73), Expect = 0.57, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 371 VFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKA 415
V + + G PA G L GDQI+SING ++ G + I+K
Sbjct: 31 VIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKG 76
>pdb|2QG1|A Chain A, Crystal Structure Of The 11th Pdz Domain Of Mpdz (Mupp1)
Length = 92
Score = 32.0 bits (71), Expect = 0.90, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 368 NEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAA 416
+ GVFV + +G A G L GDQIL +NGE V + V +LK +
Sbjct: 28 DTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKCS 77
>pdb|3SUZ|A Chain A, Crystal Structure Of Rat Mint2 Ppc
Length = 287
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 348 RELVLCKDASGLIGLRVC--AINEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGY 404
+EL L K ++G+ V +I V + + G PA+ G L GDQI+SING ++ G
Sbjct: 193 KELQLEKHKGEILGVVVVESSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGL 252
Query: 405 NMKQVHKILKA 415
+ I+K
Sbjct: 253 PLATCQGIIKG 263
>pdb|1IU0|A Chain A, The First Pdz Domain Of Psd-95
pdb|1IU2|A Chain A, The First Pdz Domain Of Psd-95
Length = 91
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 14/85 (16%)
Query: 434 VTLHRDSSGHFGFHFNKGQ------------IVSLVKDSSAARNGLL-VNHNILEVNGAN 480
+TL R +SG GF G I ++ +AA++G L VN +IL VN +
Sbjct: 6 ITLERGNSG-LGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVD 64
Query: 481 VVGLKDKELLEAMEKGGSVLTLTLI 505
V + +EA+++ GS++ L ++
Sbjct: 65 VREVTHSAAVEALKEAGSIVRLYVM 89
>pdb|1WG6|A Chain A, Solution Structure Of Pdz Domain In Protein Xp_110852
Length = 127
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 19/115 (16%)
Query: 323 DSCTMIAPLSSSGS-GLKKAYVTNGIRELVLCKDASGLIGLRVCAINEGVFVCLVERGSP 381
+ T+ PL+ SGS GL + N RE + G+F+ + G
Sbjct: 23 EQLTLEIPLNDSGSAGLGVSLKGNKSRE---------------TGTDLGIFIKSIIHGGA 67
Query: 382 ASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPV--NNIRVVIRDRPLERT 433
A G LR DQ++++NGET+ G + + + L+ + NIR +I+ L R+
Sbjct: 68 AFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVILRRS 122
>pdb|3TMH|A Chain A, Crystal Structure Of Dual-Specific A-Kinase Anchoring
Protein 2 In Complex With Camp-Dependent Protein Kinase
A Type Ii Alpha And Pdzk1
pdb|3TMH|E Chain E, Crystal Structure Of Dual-Specific A-Kinase Anchoring
Protein 2 In Complex With Camp-Dependent Protein Kinase
A Type Ii Alpha And Pdzk1
pdb|3TMH|I Chain I, Crystal Structure Of Dual-Specific A-Kinase Anchoring
Protein 2 In Complex With Camp-Dependent Protein Kinase
A Type Ii Alpha And Pdzk1
Length = 87
Score = 31.2 bits (69), Expect = 1.3, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 352 LCKDASGL--IGLRVCAIN--EGVFVCLVERGSPASLVGLRFGDQILSINGETV 401
LC+ A G G + AI G F+ V++G PA L GL D I+ +NG V
Sbjct: 6 LCRLAKGENGYGFHLNAIRGLPGSFIKEVQKGGPADLAGLEDEDVIIEVNGVNV 59
>pdb|1LCY|A Chain A, Crystal Structure Of The Mitochondrial Serine Protease
Htra2
Length = 325
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 12/110 (10%)
Query: 332 SSSG-SGLKKAYVTNGIRELVLCKDASGLIGLRVCA---INEGVFVCLVERGSPASLVGL 387
SSSG SG ++ Y+ G+ L L + LR + + GV + V GSPA GL
Sbjct: 217 SSSGISGSQRRYI--GVMMLTLSPSILAELQLREPSFPDVQHGVLIHKVILGSPAHRAGL 274
Query: 388 RFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLH 437
R GD IL+I + V N + V++ ++ ++ ++ R T+TL+
Sbjct: 275 RPGDVILAIGEQMV--QNAEDVYEAVRTQS----QLAVQIRRGRETLTLY 318
>pdb|2VSP|A Chain A, Crystal Structure Of The Fourth Pdz Domain Of Pdz Domain-
Containing Protein 1
pdb|2VSP|B Chain B, Crystal Structure Of The Fourth Pdz Domain Of Pdz Domain-
Containing Protein 1
pdb|2VSP|C Chain C, Crystal Structure Of The Fourth Pdz Domain Of Pdz Domain-
Containing Protein 1
pdb|2VSP|D Chain D, Crystal Structure Of The Fourth Pdz Domain Of Pdz Domain-
Containing Protein 1
Length = 91
Score = 31.2 bits (69), Expect = 1.4, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 352 LCKDASGL--IGLRVCAIN--EGVFVCLVERGSPASLVGLRFGDQILSINGETV 401
LC+ A G G + AI G F+ V++G PA L GL D I+ +NG V
Sbjct: 6 LCRLAKGENGYGFHLNAIRGLPGSFIKEVQKGGPADLAGLEDEDVIIEVNGVNV 59
>pdb|1UIT|A Chain A, Solution Structure Of Rsgi Ruh-006, The Third Pdz Domain
Of Hdlg5 (Kiaa0583) Protein [homo Sapiens]
Length = 117
Score = 31.2 bits (69), Expect = 1.5, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 370 GVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKIL 413
G++V V GS A GL +GDQ+L NG + +Q I+
Sbjct: 43 GIYVSKVTVGSIAHQAGLEYGDQLLEFNGINLRSATEQQARLII 86
>pdb|2GZV|A Chain A, The Cystal Structure Of The Pdz Domain Of Human Pick1
(Casp Target)
Length = 114
Score = 31.2 bits (69), Expect = 1.5, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 349 ELVLCKDASGLIGLRVCAINE---GVFVCLVERGSPASLVG-LRFGDQILSINGETVAGY 404
++ L KDA LIG+ + + +++ V +PA+L G + GD+I +NG ++ G
Sbjct: 27 KVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGK 86
Query: 405 NMKQVHKILK 414
+V K+++
Sbjct: 87 TKVEVAKMIQ 96
>pdb|2PKU|A Chain A, Solution Structure Of Pick1 Pdz In Complex With The
Carboxyl Tail Peptide Of Glur2
Length = 87
Score = 31.2 bits (69), Expect = 1.5, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 349 ELVLCKDASGLIGLRVCAINE---GVFVCLVERGSPASLVG-LRFGDQILSINGETVAGY 404
++ L KDA LIG+ + + +++ V +PA+L G + GD+I +NG ++ G
Sbjct: 5 KVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGK 64
Query: 405 NMKQVHKILK 414
+V K+++
Sbjct: 65 TKVEVAKMIQ 74
>pdb|2WL7|A Chain A, Crystal Structure Of The Psd93 Pdz1 Domain
Length = 102
Score = 31.2 bits (69), Expect = 1.5, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 14/82 (17%)
Query: 434 VTLHRDSSGHFGFHFNKGQ------------IVSLVKDSSAARNGLL-VNHNILEVNGAN 480
+TL R +SG GF G I ++ +AA +G L VN IL VN +
Sbjct: 13 ITLERGNSG-LGFSIAGGTDNPHIGDDPGIFITKIIPGGAAAEDGRLRVNDCILRVNEVD 71
Query: 481 VVGLKDKELLEAMEKGGSVLTL 502
V + + +EA+++ GS++ L
Sbjct: 72 VSEVSHSKAVEALKEAGSIVRL 93
>pdb|1XZ9|A Chain A, Structure Of Af-6 Pdz Domain
pdb|2EXG|A Chain A, Making Protein-protein Interactions Drugable: Discovery Of
Low-molecular-weight Ligands For The Af6 Pdz Domain
Length = 101
Score = 31.2 bits (69), Expect = 1.6, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 9/87 (10%)
Query: 425 IRDRPLERTVTLHRDSSGHFGFHFNKGQ--------IVSLVKDSSAARNG-LLVNHNILE 475
+R P TVTL + + KG + S+VK +A +G L +L
Sbjct: 6 LRKEPEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLS 65
Query: 476 VNGANVVGLKDKELLEAMEKGGSVLTL 502
V+G ++VGL + E M + SV+TL
Sbjct: 66 VDGRSLVGLSQERAAELMTRTSSVVTL 92
Score = 29.6 bits (65), Expect = 4.6, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 370 GVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKIL 413
G++V V +G A + G L GDQ+LS++G ++ G + ++ +++
Sbjct: 39 GIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELM 83
>pdb|1X45|A Chain A, Solution Structure Of The First Pdz Domain Of Amyloid Beta
A4 Precursor Protein-Binding Family A, Member 1
Length = 98
Score = 31.2 bits (69), Expect = 1.6, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 371 VFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKA 415
V + + G PA G L GDQI+SING ++ G + I+K
Sbjct: 35 VIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKG 80
>pdb|3HPK|A Chain A, Oxidized Dimeric Pick1 Pdz In Complex With The Carboxyl
Tail Of Glur2
pdb|3HPK|B Chain B, Oxidized Dimeric Pick1 Pdz In Complex With The Carboxyl
Tail Of Glur2
Length = 125
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 349 ELVLCKDASGLIGLRVCAINE---GVFVCLVERGSPASLVG-LRFGDQILSINGETVAGY 404
++ L KDA LIG+ + + +++ V +PA+L G + GD+I +NG ++ G
Sbjct: 22 KVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGK 81
Query: 405 NMKQVHKILK 414
+V K+++
Sbjct: 82 TKVEVAKMIQ 91
>pdb|2VPH|A Chain A, Crystal Structure Of The Human Protein Tyrosine
Phosphatase, Non-Receptor Type 4, Pdz Domain
pdb|2VPH|B Chain B, Crystal Structure Of The Human Protein Tyrosine
Phosphatase, Non-Receptor Type 4, Pdz Domain
Length = 100
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 371 VFVCLVERGSPASLVGLRF--GDQILSINGETVAGYNMKQVHKILKAA---PVNNIRVVI 425
V V V G+PA L R GDQ++ ING +A + QV +KA+ + +++
Sbjct: 32 VIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLV 91
Query: 426 RDRPLERTV 434
R +E TV
Sbjct: 92 RPNAVESTV 100
>pdb|2KOH|A Chain A, Nmr Structure Of Mouse Par3-Pdz3 In Complex With
Ve-Cadherin C-Terminus
Length = 111
Score = 30.8 bits (68), Expect = 1.7, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 370 GVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILK 414
G+FV + G AS G LR DQ++++NGE++ G ++ + L+
Sbjct: 40 GIFVKSIINGGAASKDGRLRVNDQLIAVNGESLLGKANQEAMETLR 85
>pdb|2K1Z|A Chain A, Solution Structure Of Par-3 Pdz3
pdb|2K20|A Chain A, Solution Structure Of Par-3 Pdz3 In Complex With Pten
Peptide
Length = 104
Score = 30.8 bits (68), Expect = 1.7, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 370 GVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILK 414
G+FV + G AS G LR DQ++++NGE++ G ++ + L+
Sbjct: 37 GIFVKSIINGGAASKDGRLRVNDQLIAVNGESLLGKANQEAMETLR 82
>pdb|2EJY|A Chain A, Solution Structure Of The P55 Pdz T85c Domain Complexed
With The Glycophorin C F127c Peptide
Length = 97
Score = 30.8 bits (68), Expect = 1.8, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 464 RNGLL-VNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIP 506
R G L V ILE+NG NV +L +AM++ +++L +IP
Sbjct: 51 RQGSLHVGDEILEINGTNVTNHSVDQLQKAMKETKGMISLKVIP 94
Score = 29.6 bits (65), Expect = 4.2, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 387 LRFGDQILSINGETVAGYNMKQVHKILK 414
L GD+IL ING V +++ Q+ K +K
Sbjct: 55 LHVGDEILEINGTNVTNHSVDQLQKAMK 82
>pdb|3NFK|A Chain A, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of A Rabies Virus G Protein
pdb|3NFK|B Chain B, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of A Rabies Virus G Protein
pdb|3NFL|A Chain A, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of The Glun2a Nmda Receptor Subunit
pdb|3NFL|B Chain B, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of The Glun2a Nmda Receptor Subunit
pdb|3NFL|C Chain C, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of The Glun2a Nmda Receptor Subunit
pdb|3NFL|D Chain D, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of The Glun2a Nmda Receptor Subunit
Length = 107
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 371 VFVCLVERGSPASLVGLRF--GDQILSINGETVAGYNMKQVHKILKAA 416
V V V G+PA L R GDQ++ ING +A + QV +KA+
Sbjct: 45 VIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKAS 92
>pdb|2V90|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|B Chain B, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|C Chain C, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|D Chain D, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|E Chain E, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|F Chain F, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
Length = 96
Score = 30.8 bits (68), Expect = 2.1, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 370 GVFVCLVERGSPASLVGLRFGDQILSINGETVAG 403
G F+ V+ G PA G++ GD+++++ GE+V G
Sbjct: 31 GQFLWEVDPGLPAKKAGMQAGDRLVAVAGESVEG 64
>pdb|2LOB|A Chain A, Pdz Domain Of Cal (Cystic Fibrosis Transmembrane
Regulator-Associated Ligand)
Length = 112
Score = 30.8 bits (68), Expect = 2.1, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 346 GIRELVLCKDASGLIGLRVCAINEG---VFVCLVERGSPASLVG-LRFGDQILSINGETV 401
GIR+++L K+ +G+ + E + + + G PA G L GD IL++NG +
Sbjct: 27 GIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNL 86
Query: 402 AGYNMKQVHKIL 413
K+ IL
Sbjct: 87 RDTKHKEAVTIL 98
>pdb|2EV8|A Chain A, Solution Structure Of The Erythroid P55 Pdz Domain
Length = 97
Score = 30.8 bits (68), Expect = 2.1, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 464 RNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIP 506
+ L V ILE+NG NV +L +AM++ +++L +IP
Sbjct: 52 QGSLHVGDEILEINGTNVTNHSVDQLQKAMKETKGMISLKVIP 94
Score = 29.6 bits (65), Expect = 4.9, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 387 LRFGDQILSINGETVAGYNMKQVHKILK 414
L GD+IL ING V +++ Q+ K +K
Sbjct: 55 LHVGDEILEINGTNVTNHSVDQLQKAMK 82
>pdb|1WIF|A Chain A, The Solution Structure Of Rsgi Ruh-020, A Pdz Domain Of
Hypothetical Protein From Mouse
Length = 126
Score = 30.4 bits (67), Expect = 2.3, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 340 KAYVTNGIRELVLCKDASGLIGLRVCAINEGVFVC---LVERGSPASLVGLRFGDQILSI 396
KA V++ + +++ K G +GL + I G ++ L+ +G+ AS L+ GD ++S+
Sbjct: 19 KASVSS-LNKVIQTKLTVGNLGLGLVVIQNGPYLQISHLINKGAAASDGILQPGDVLISV 77
Query: 397 NGETVAGYNMKQVHKILKAAPVNNI 421
V GY +++ K+L+ + +
Sbjct: 78 GHANVLGYTLREFLKLLQNITIGTV 102
>pdb|3STJ|A Chain A, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|B Chain B, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|C Chain C, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|D Chain D, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|E Chain E, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|F Chain F, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|G Chain G, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|H Chain H, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|I Chain I, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|J Chain J, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|K Chain K, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|L Chain L, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
Length = 345
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 367 INEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRV-VI 425
+ G FV V GS ++ G++ GD I S+NG+ + + + +I P +++ ++
Sbjct: 261 VQRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSF-AELRSRIATTEPGTKVKLGLL 319
Query: 426 RD-RPLERTVTLHRDSS 441
R+ +PLE VTL +S
Sbjct: 320 RNGKPLEVEVTLDTSTS 336
>pdb|2CS5|A Chain A, Solution Structure Of Pdz Domain Of Protein Tyrosine
Phosphatase, Non-Receptor Type 4
Length = 119
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 371 VFVCLVERGSPASLVGLRF--GDQILSINGETVAGYNMKQVHKILKAA 416
V V V G+PA L R GDQ++ ING +A + QV +KA+
Sbjct: 43 VIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKAS 90
>pdb|1I16|A Chain A, Structure Of Interleukin 16: Implications For Function,
Nmr, 20 Structures
Length = 130
Score = 30.4 bits (67), Expect = 2.9, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 390 GDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVT 435
GD+IL + G + G + I+KA P + +VIR + L+ T
Sbjct: 79 GDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRKSLQSKET 124
>pdb|2EEJ|A Chain A, Solution Structure Of Fourth Pdz Domain Of Pdz Domain
Containing Protein 1
Length = 96
Score = 30.0 bits (66), Expect = 3.0, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 352 LCKDASGL--IGLRVCAIN--EGVFVCLVERGSPASLVGLRFGDQILSINGETV 401
LC+ A G G + AI G F+ V++G PA L GL D I+ +NG V
Sbjct: 10 LCRLAKGENGYGFHLNAIRGLPGSFIKEVQKGGPADLAGLEDEDVIIEVNGVNV 63
>pdb|2IWN|A Chain A, 3rd Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
Length = 97
Score = 30.0 bits (66), Expect = 3.0, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 453 IVSLVKDSSAARNGLL-VNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLI 505
+ S+ K S+ +G + + I+ V+G N+ G +++ +E + G + LTL+
Sbjct: 37 VKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLM 90
Score = 30.0 bits (66), Expect = 3.6, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 370 GVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILK 414
G+FV + + S G ++ GDQI++++G + G+ +Q ++L+
Sbjct: 34 GIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLR 79
>pdb|2DC2|A Chain A, Solution Structure Of Pdz Domain
Length = 103
Score = 30.0 bits (66), Expect = 3.0, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 338 LKKAYVTNGIRELVLCKDASGLIGLRVCAINEG---VFVCLVERGSPASLVG-LRFGDQI 393
+KK+ IR+++L K+ +G+ + E + + + G PA G L GD I
Sbjct: 1 MKKSQGVGPIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAI 60
Query: 394 LSINGETVAGYNMKQVHKIL 413
L++NG + K+ IL
Sbjct: 61 LAVNGVNLRDTKHKEAVTIL 80
>pdb|2DLS|A Chain A, Solution Structure Of The Pdz Domain Of Human Rho Guanine
Nucleotide Exchange Factor 11
Length = 93
Score = 30.0 bits (66), Expect = 3.1, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 10/85 (11%)
Query: 332 SSSGSGLKKAYVTNGIRELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGD 391
SS SG++ R +++ KD G G V + V V V G A G++ GD
Sbjct: 2 SSGSSGVQ--------RCVIIQKDQHGF-GFTVSG-DRIVLVQSVRPGGAAMKAGVKEGD 51
Query: 392 QILSINGETVAGYNMKQVHKILKAA 416
+I+ +NG V + +V K++K+
Sbjct: 52 RIIKVNGTMVTNSSHLEVVKLIKSG 76
>pdb|1RGR|A Chain A, Cyclic Peptides Targeting Pdz Domains Of Psd-95:
Structural Basis For Enhanced Affinity And Enzymatic
Stability
Length = 99
Score = 30.0 bits (66), Expect = 3.4, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 14/85 (16%)
Query: 434 VTLHRDSSGHFGFHFNKGQ------------IVSLVKDSSAARNGLL-VNHNILEVNGAN 480
+TL R +SG GF G I ++ +AA++G L VN +IL VN +
Sbjct: 5 ITLERGNSG-LGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVD 63
Query: 481 VVGLKDKELLEAMEKGGSVLTLTLI 505
V + +EA+++ GS++ L ++
Sbjct: 64 VREVTHSAAVEALKEAGSIVRLYVM 88
>pdb|1KEF|A Chain A, Pdz1 Of Sap90
Length = 93
Score = 30.0 bits (66), Expect = 3.4, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 14/85 (16%)
Query: 434 VTLHRDSSGHFGFHFNKGQ------------IVSLVKDSSAARNGLL-VNHNILEVNGAN 480
+TL R +SG GF G I ++ +AA++G L VN +IL VN +
Sbjct: 5 ITLERGNSG-LGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVD 63
Query: 481 VVGLKDKELLEAMEKGGSVLTLTLI 505
V + +EA+++ GS++ L ++
Sbjct: 64 VREVTHSAAVEALKEAGSIVRLYVM 88
>pdb|1T2M|A Chain A, Solution Structure Of The Pdz Domain Of Af-6
Length = 101
Score = 30.0 bits (66), Expect = 3.6, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 453 IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTL 502
+ S+VK +A +G L +L V+G ++VGL + E M + SV+TL
Sbjct: 36 VKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTSSVVTL 86
Score = 29.6 bits (65), Expect = 4.6, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 370 GVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKIL 413
G++V V +G A + G L GDQ+LS++G ++ G + ++ +++
Sbjct: 33 GIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELM 77
>pdb|3AXA|A Chain A, Crystal Structure Of Afadin Pdz Domain In Complex With The
C-Terminal Peptide From Nectin-3
pdb|3AXA|B Chain B, Crystal Structure Of Afadin Pdz Domain In Complex With The
C-Terminal Peptide From Nectin-3
Length = 106
Score = 30.0 bits (66), Expect = 3.6, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 453 IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTL 502
+ S+VK +A +G L +L V+G ++VGL + E M + SV+TL
Sbjct: 42 VKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTSSVVTL 92
Score = 29.6 bits (65), Expect = 4.6, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 370 GVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKIL 413
G++V V +G A + G L GDQ+LS++G ++ G + ++ +++
Sbjct: 39 GIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELM 83
>pdb|2AIN|A Chain A, Solution Structure Of The Af-6 Pdz Domain Complexed With
The C-Terminal Peptide From The Bcr Protein
Length = 93
Score = 30.0 bits (66), Expect = 3.6, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 453 IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTL 502
+ S+VK +A +G L +L V+G ++VGL + E M + SV+TL
Sbjct: 36 VKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTSSVVTL 86
Score = 29.6 bits (65), Expect = 4.6, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 370 GVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKIL 413
G++V V +G A + G L GDQ+LS++G ++ G + ++ +++
Sbjct: 33 GIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELM 77
>pdb|2PZD|A Chain A, Crystal Structure Of The Htra2OMI PDZ DOMAIN BOUND TO A
PHAGE-Derived Ligand (Wtmfwv)
pdb|2PZD|B Chain B, Crystal Structure Of The Htra2OMI PDZ DOMAIN BOUND TO A
PHAGE-Derived Ligand (Wtmfwv)
Length = 113
Score = 29.6 bits (65), Expect = 3.9, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 367 INEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIR 426
+ GV + V GSPA GLR GD IL+I + V N + V++ ++ ++ ++
Sbjct: 33 VQHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQ--NAEDVYEAVRTQS----QLAVQ 86
Query: 427 DRPLERTVTLH 437
R T+TL+
Sbjct: 87 IRRGRETLTLY 97
>pdb|3GSL|A Chain A, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2
pdb|3GSL|B Chain B, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2
Length = 196
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 14/82 (17%)
Query: 434 VTLHRDSSGHFGFHFNKGQ------------IVSLVKDSSAARNGLL-VNHNILEVNGAN 480
+TL R +SG GF G I ++ +AA++G L VN +IL VN +
Sbjct: 9 ITLERGNSG-LGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVD 67
Query: 481 VVGLKDKELLEAMEKGGSVLTL 502
V + +EA+++ GS++ L
Sbjct: 68 VREVTHSAAVEALKEAGSIVRL 89
>pdb|2KA9|A Chain A, Solution Structure Of Psd-95 Pdz12 Complexed With Cypin
Peptide
Length = 189
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 14/82 (17%)
Query: 434 VTLHRDSSGHFGFHFNKGQ------------IVSLVKDSSAARNGLL-VNHNILEVNGAN 480
+TL R +SG GF G I ++ +AA++G L VN +IL VN +
Sbjct: 6 ITLERGNSG-LGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVD 64
Query: 481 VVGLKDKELLEAMEKGGSVLTL 502
V + +EA+++ GS++ L
Sbjct: 65 VREVTHSAAVEALKEAGSIVRL 86
>pdb|1WHA|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Scribble (Kiaa0147 Protein)
Length = 105
Score = 29.6 bits (65), Expect = 4.6, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 366 AINEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAA 416
A + G+FV + G A G L+ GD++LSING V +L AA
Sbjct: 35 AGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAA 86
>pdb|3ZRT|A Chain A, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|B Chain B, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|C Chain C, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|D Chain D, Crystal Structure Of Human Psd-95 Pdz1-2
Length = 199
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 14/85 (16%)
Query: 434 VTLHRDSSGHFGFHFNKGQ------------IVSLVKDSSAARNGLL-VNHNILEVNGAN 480
+TL R +SG GF G I ++ +AA++G L VN +IL VN +
Sbjct: 16 ITLERGNSG-LGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVD 74
Query: 481 VVGLKDKELLEAMEKGGSVLTLTLI 505
V + +EA+++ GS++ L ++
Sbjct: 75 VREVTHSAAVEALKEAGSIVRLYVM 99
>pdb|1UFX|A Chain A, Solution Structure Of The Third Pdz Domain Of Human
Kiaa1526 Protein
Length = 103
Score = 29.6 bits (65), Expect = 4.7, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 19/61 (31%)
Query: 428 RPLERTVTLHRDSSGHFGFHFNKGQIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDK 487
+PL R VT+ R S H N GQ L V H ILEVNG + G + +
Sbjct: 31 QPLPRIVTIQRGGSAH-----NCGQ--------------LKVGHVILEVNGLTLRGKEHR 71
Query: 488 E 488
E
Sbjct: 72 E 72
>pdb|1UHP|A Chain A, Solution Structure Of Rsgi Ruh-005, A Pdz Domain In Human
Cdna, Kiaa1095
Length = 107
Score = 29.6 bits (65), Expect = 5.0, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 17/78 (21%)
Query: 433 TVTLHRDSSGHFGFHF--------------NKGQIVSLVKDS--SAARNGLLVNHNILEV 476
T+ LHRDS G GF+ ++G VS + DS +A GL ++ I+EV
Sbjct: 11 TLVLHRDS-GSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEV 69
Query: 477 NGANVVGLKDKELLEAME 494
NG ++ + +EA +
Sbjct: 70 NGRDLSRATHDQAVEAFK 87
>pdb|2DJT|A Chain A, Solution Structures Of The Pdz Domain Of Human Unnamed
Protein Product
Length = 104
Score = 29.6 bits (65), Expect = 5.0, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 11/82 (13%)
Query: 433 TVTLHRDSSGHFGFHFNKGQIVS---------LVKDSSAARNGLL-VNHNILEVNGANVV 482
+V L R +G FG G+ V+ L+KD A R G L V +L +NG +
Sbjct: 14 SVELVRGYAG-FGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQ 72
Query: 483 GLKDKELLEAMEKGGSVLTLTL 504
GL + +E + GG L L +
Sbjct: 73 GLTHAQAVERIRAGGPQLHLVI 94
>pdb|3MVG|A Chain A, Native Structure Of Irip, A Type I Ribosome Inactivating
Protein From Iris Hollandica Var. At 1.25 A
pdb|3MVG|B Chain B, Native Structure Of Irip, A Type I Ribosome Inactivating
Protein From Iris Hollandica Var. At 1.25 A
Length = 275
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 25/56 (44%)
Query: 129 YQAQNSYPSVPNQPQAPNTYPSMPNQLQAPNGFYPLTXXXXXXXXXLPYPINPLAS 184
YQAQN + + + P P Y + P++L + L + INPLA+
Sbjct: 76 YQAQNRFYLLSDTPANPQVYGNNPHRLTFTGSYGALQNVAKSNRENIDLGINPLAT 131
>pdb|1WF8|A Chain A, Solution Structure Of The Pdz Domain Of
SpinophilinNEURABINII PROTEIN
Length = 107
Score = 28.9 bits (63), Expect = 6.5, Method: Composition-based stats.
Identities = 33/108 (30%), Positives = 50/108 (46%), Gaps = 18/108 (16%)
Query: 332 SSSGSGLKKAYVTNGIRELVLCKDASGL----IGLRVCAI----NEGVFVCLVERGSPAS 383
SS SGL+ + + L KD GL IG+ V A G+FV V G A
Sbjct: 2 SSGSSGLE-------LFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQ 54
Query: 384 LVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVI-RDRP 429
G ++ DQI+ ++G ++ G +L+ N+R VI R++P
Sbjct: 55 RDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTK-GNVRFVIGREKP 101
>pdb|1UEW|A Chain A, Solution Structure Of The Forth Pdz Domain Of Human
Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein)
Length = 114
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 15/88 (17%)
Query: 434 VTLHRDSSGHFGF----HFNK----------GQIVSLVKDSSAARNGLL-VNHNILEVNG 478
V +HR + FGF N+ +I ++ S A R L V IL VNG
Sbjct: 14 VVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNG 73
Query: 479 ANVVGLKDKELLEAMEKGGSVLTLTLIP 506
+++ + ++++ ++ G +TL +IP
Sbjct: 74 QSIINMPHADIVKLIKDAGLSVTLRIIP 101
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 379 GSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAA 416
GSPA L+ GD+IL++NG+++ + K++K A
Sbjct: 53 GSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIKDA 91
>pdb|4A8A|A Chain A, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|B Chain B, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|C Chain C, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|D Chain D, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|E Chain E, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|F Chain F, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|G Chain G, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|H Chain H, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|I Chain I, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|J Chain J, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|K Chain K, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|L Chain L, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8B|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8C|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A9G|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|M Chain M, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|N Chain N, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|O Chain O, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|P Chain P, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|Q Chain Q, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|R Chain R, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|S Chain S, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|T Chain T, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|U Chain U, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|V Chain V, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|W Chain W, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|Y Chain Y, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
Length = 436
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 58/132 (43%), Gaps = 22/132 (16%)
Query: 367 INEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRV-VI 425
+ G FV V GS ++ G++ GD I S+NG+ + + + +I P +++ ++
Sbjct: 261 VQRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSF-AELRSRIATTEPGTKVKLGLL 319
Query: 426 RD-RPLERTVTLHRD-------------------SSGHFGFHFNKGQIVSLVKDSSAARN 465
R+ +PLE VTL S G +I +VK S AA+
Sbjct: 320 RNGKPLEVEVTLDTSTSSSASAEMITPALEGATLSDGQLKDGGKGIKIDEVVKGSPAAQA 379
Query: 466 GLLVNHNILEVN 477
GL + I+ VN
Sbjct: 380 GLQKDDVIIGVN 391
>pdb|1WI2|A Chain A, Solution Structure Of The Pdz Domain From Riken Cdna
2700099c19
Length = 104
Score = 28.9 bits (63), Expect = 8.2, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 370 GVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRV 423
G+F+ V S A GL+ GDQ+L++N + +ILK A ++RV
Sbjct: 42 GIFISKVIPDSDAHRAGLQEGDQVLAVNDVDFQDIEHSKAVEILKTAREISMRV 95
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.131 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,014,031
Number of Sequences: 62578
Number of extensions: 486302
Number of successful extensions: 1006
Number of sequences better than 100.0: 182
Number of HSP's better than 100.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 78
Number of HSP's that attempted gapping in prelim test: 755
Number of HSP's gapped (non-prelim): 279
length of query: 530
length of database: 14,973,337
effective HSP length: 103
effective length of query: 427
effective length of database: 8,527,803
effective search space: 3641371881
effective search space used: 3641371881
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.4 bits)