BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9257
(530 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O00560|SDCB1_HUMAN Syntenin-1 OS=Homo sapiens GN=SDCBP PE=1 SV=1
Length = 298
Score = 263 bits (671), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 125/253 (49%), Positives = 176/253 (69%), Gaps = 6/253 (2%)
Query: 278 LYPSLDNYMGLEVASELINAYARENAANERESDAAGNTVARQAPRDSCTMIAPLSSSGSG 337
LYP L YMGL + E I R N A + G VAR P M+AP++ + G
Sbjct: 49 LYPELSQYMGLSLNEEEI----RANVAVVSGAPLQGQLVAR--PSSINYMVAPVTGNDVG 102
Query: 338 LKKAYVTNGIRELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSIN 397
+++A + GIRE++LCKD G IGLR+ +I+ G+FV LV+ SPASLVGLRFGDQ+L IN
Sbjct: 103 IRRAEIKQGIREVILCKDQDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQIN 162
Query: 398 GETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSSGHFGFHFNKGQIVSLV 457
GE AG++ + HK+LK A I + IRDRP ERT+T+H+DS+GH GF F G+I S+V
Sbjct: 163 GENCAGWSSDKAHKVLKQAFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIV 222
Query: 458 KDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPTSMYQHMMKKM 517
KDSSAARNGLL HNI E+NG NV+GLKD ++ + + G+V+T+T++P +++H++K+M
Sbjct: 223 KDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPAFIFEHIIKRM 282
Query: 518 SFNLVKDKMDHSI 530
+ +++K MDH+I
Sbjct: 283 APSIMKSLMDHTI 295
>sp|O08992|SDCB1_MOUSE Syntenin-1 OS=Mus musculus GN=Sdcbp PE=2 SV=1
Length = 299
Score = 261 bits (667), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 126/253 (49%), Positives = 178/253 (70%), Gaps = 6/253 (2%)
Query: 278 LYPSLDNYMGLEVASELINAYARENAANERESDAAGNTVARQAPRDSCTMIAPLSSSGSG 337
LYP L YMGL L A E+ + A G VAR P M+AP++ + +G
Sbjct: 50 LYPELSQYMGLS----LNEAEICESMPMVSGAPAQGQLVAR--PSSVNYMVAPVTGNDAG 103
Query: 338 LKKAYVTNGIRELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSIN 397
+++A + GIRE++LCKD G IGLR+ +I+ G+FV LV+ SPASLVGLRFGDQ+L IN
Sbjct: 104 IRRAEIKQGIREVILCKDQDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQIN 163
Query: 398 GETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSSGHFGFHFNKGQIVSLV 457
GE AG++ + HK+LK A I + IRDRP ERTVT+H+DSSGH GF F G+I S+V
Sbjct: 164 GENCAGWSSDKAHKVLKQAFGEKITMTIRDRPFERTVTMHKDSSGHVGFIFKSGKITSIV 223
Query: 458 KDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPTSMYQHMMKKM 517
KDSSAARNGLL +H+I E+NG NV+GLKD ++ + + G+V+T+T++PT +++H++K+M
Sbjct: 224 KDSSAARNGLLTDHHICEINGQNVIGLKDAQIADILSTAGTVVTITIMPTFIFEHIIKRM 283
Query: 518 SFNLVKDKMDHSI 530
+ +++K MDH+I
Sbjct: 284 APSIMKSLMDHTI 296
>sp|Q9JI92|SDCB1_RAT Syntenin-1 OS=Rattus norvegicus GN=Sdcbp PE=1 SV=1
Length = 300
Score = 259 bits (661), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 123/253 (48%), Positives = 177/253 (69%), Gaps = 6/253 (2%)
Query: 278 LYPSLDNYMGLEVASELINAYARENAANERESDAAGNTVARQAPRDSCTMIAPLSSSGSG 337
LYP L YMGL ++ A EN + G VAR P M+AP++ + +G
Sbjct: 51 LYPELSQYMGLSLS----EAEICENMPVVSGAPTQGQLVAR--PSSVNYMVAPVTGNDAG 104
Query: 338 LKKAYVTNGIRELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSIN 397
+++A + GIRE++LCKD G IGLR+ +++ G+FV LV+ SPASLVGLRFGDQ+L IN
Sbjct: 105 IRRAEIKQGIREVILCKDQDGKIGLRLKSVDNGIFVQLVQANSPASLVGLRFGDQVLQIN 164
Query: 398 GETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSSGHFGFHFNKGQIVSLV 457
GE AG++ + HK+LK A I + IRDRP ERTVT+H+DSSGH GF F G+I S+V
Sbjct: 165 GENCAGWSSDKAHKVLKQAFGEKITMTIRDRPFERTVTMHKDSSGHVGFIFKSGKITSIV 224
Query: 458 KDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPTSMYQHMMKKM 517
KDSSAARNGLL +H+I E+NG NV+GLKD ++ + + G+V+T+T++P +++H++K+M
Sbjct: 225 KDSSAARNGLLTDHHICEINGQNVIGLKDAQIADILSTAGTVVTITIMPAFIFEHIIKRM 284
Query: 518 SFNLVKDKMDHSI 530
+ +++K MDH+I
Sbjct: 285 APSIMKSLMDHTI 297
>sp|Q99JZ0|SDCB2_MOUSE Syntenin-2 OS=Mus musculus GN=Sdcbp2 PE=2 SV=1
Length = 292
Score = 246 bits (627), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 127/258 (49%), Positives = 175/258 (67%), Gaps = 9/258 (3%)
Query: 273 SALVPLYPSLDNYMGLEVASELINAYARENAANERESDAAGNTVARQAPRDSCTMIAPLS 332
S L P L++YMGL ++S+ + ++N +SD V P ++AP+S
Sbjct: 41 SELYPNLAELESYMGLSLSSQEV----QKNLTQIPDSDNM--VVTSPGPGQ---VVAPVS 91
Query: 333 SSGSGLKKAYVTNGIRELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQ 392
+ G+ +A + G+RE+ LCKD G GLR+ A+++G+FV LV+ +PASLVGLRFGDQ
Sbjct: 92 GNNLGILRAEIKPGVREIHLCKDERGKTGLRLQAVDKGLFVQLVQANTPASLVGLRFGDQ 151
Query: 393 ILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSSGHFGFHFNKGQ 452
IL I+G AG+N + HK+LK A I +VIRDRP +RTVT+H+DSSG GF KG+
Sbjct: 152 ILQIDGCDCAGWNTHKAHKVLKKASAEKIVMVIRDRPFQRTVTMHKDSSGQVGFSIKKGK 211
Query: 453 IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPTSMYQH 512
IVS+VK SSAARNGLL NH + EVNG NV+GLKDK++ E + G V+TLT+IPT +Y+H
Sbjct: 212 IVSVVKGSSAARNGLLTNHYVCEVNGQNVIGLKDKKVTEILTTAGDVITLTIIPTVIYEH 271
Query: 513 MMKKMSFNLVKDKMDHSI 530
M+K++S L+ MDHSI
Sbjct: 272 MIKRLSPLLLHHTMDHSI 289
>sp|Q9H190|SDCB2_HUMAN Syntenin-2 OS=Homo sapiens GN=SDCBP2 PE=2 SV=2
Length = 292
Score = 241 bits (616), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 122/256 (47%), Positives = 177/256 (69%), Gaps = 12/256 (4%)
Query: 278 LYP---SLDNYMGLEVASELINAYARENAANERESDAAGNTVARQAPRDSCTMIAPLSSS 334
LYP L+NYMGL ++S+ + +E+ E D+ V+ P M+AP++
Sbjct: 43 LYPNLAELENYMGLSLSSQEV----QESLLQIPEGDS--TAVSGPGP---GQMVAPVTGY 93
Query: 335 GSGLKKAYVTNGIRELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQIL 394
G+++A + G+RE+ LCKD G GLR+ +++G+FV LV+ +PASLVGLRFGDQ+L
Sbjct: 94 SLGVRRAEIKPGVREIHLCKDERGKTGLRLRKVDQGLFVQLVQANTPASLVGLRFGDQLL 153
Query: 395 SINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSSGHFGFHFNKGQIV 454
I+G AG++ + H+++K A + I VV+RDRP +RTVT+H+DS GH GF KG+IV
Sbjct: 154 QIDGRDCAGWSSHKAHQVVKKASGDKIVVVVRDRPFQRTVTMHKDSMGHVGFVIKKGKIV 213
Query: 455 SLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPTSMYQHMM 514
SLVK SSAARNGLL NH + EV+G NV+GLKDK+++E + G+V+TLT+IP+ +Y+HM+
Sbjct: 214 SLVKGSSAARNGLLTNHYVCEVDGQNVIGLKDKKIMEILATAGNVVTLTIIPSVIYEHMV 273
Query: 515 KKMSFNLVKDKMDHSI 530
KK+ L+ MDHSI
Sbjct: 274 KKLPPVLLHHTMDHSI 289
>sp|Q5RD33|APBA2_PONAB Amyloid beta A4 precursor protein-binding family A member 2
OS=Pongo abelii GN=APBA2 PE=2 SV=1
Length = 749
Score = 73.6 bits (179), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 84/173 (48%), Gaps = 8/173 (4%)
Query: 347 IRELVLCKDASGLIGLRVCAINEG-----VFVCLVERGSPASLVG-LRFGDQILSINGET 400
+EL L K ++G+ V G V + + G PA+ G L GDQI+SING +
Sbjct: 566 CKELQLEKHKGEILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTS 625
Query: 401 VAGYNMKQVHKILKAAP-VNNIRVVIRDRPLERTVTLHR-DSSGHFGFHFNKGQIVSLVK 458
+ G + I+K +++ I P TV + R D GF G I SL++
Sbjct: 626 LVGLPLATCQGIIKGLKNQTQVKLNIVSCPPVTTVLIKRPDLKYQLGFSVQNGIICSLMR 685
Query: 459 DSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPTSMYQ 511
A R G+ V H I+E+NG +VV +++++A+ + + +P +M++
Sbjct: 686 GGIAERGGVRVGHRIIEINGQSVVATAHEKIVQALSNSVGEIHMKTMPAAMFR 738
>sp|O35431|APBA2_RAT Amyloid beta A4 precursor protein-binding family A member 2
OS=Rattus norvegicus GN=Apba2 PE=1 SV=1
Length = 750
Score = 73.2 bits (178), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 84/172 (48%), Gaps = 8/172 (4%)
Query: 348 RELVLCKDASGLIGLRVCAINEG-----VFVCLVERGSPASLVG-LRFGDQILSINGETV 401
+EL L K ++G+ V G V + + G PA+ G L GDQI+SING ++
Sbjct: 568 KELQLEKHKGEILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSL 627
Query: 402 AGYNMKQVHKILKAAP-VNNIRVVIRDRPLERTVTLHR-DSSGHFGFHFNKGQIVSLVKD 459
G + I+K +++ I P TV + R D GF G I SL++
Sbjct: 628 VGLPLATCQGIIKGLKNQTQVKLNIVSCPPVTTVLIKRPDLKYQLGFSVQNGIICSLMRG 687
Query: 460 SSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPTSMYQ 511
A R G+ V H I+E+NG +VV +++++A+ + + +P +M++
Sbjct: 688 GIAERGGVRVGHRIIEINGQSVVATAHEKIVQALSNSVGEIHMKTMPAAMFR 739
>sp|P98084|APBA2_MOUSE Amyloid beta A4 precursor protein-binding family A member 2 OS=Mus
musculus GN=Apba2 PE=1 SV=2
Length = 750
Score = 73.2 bits (178), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 84/172 (48%), Gaps = 8/172 (4%)
Query: 348 RELVLCKDASGLIGLRVCAINEG-----VFVCLVERGSPASLVG-LRFGDQILSINGETV 401
+EL L K ++G+ V G V + + G PA+ G L GDQI+SING ++
Sbjct: 568 KELQLEKHKGEILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSL 627
Query: 402 AGYNMKQVHKILKAAP-VNNIRVVIRDRPLERTVTLHR-DSSGHFGFHFNKGQIVSLVKD 459
G + I+K +++ I P TV + R D GF G I SL++
Sbjct: 628 VGLPLATCQGIIKGLKNQTQVKLNIVSCPPVTTVLIKRPDLKYQLGFSVQNGIICSLMRG 687
Query: 460 SSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPTSMYQ 511
A R G+ V H I+E+NG +VV +++++A+ + + +P +M++
Sbjct: 688 GIAERGGVRVGHRIIEINGQSVVATAHEKIVQALSNSVGEIHMKTMPAAMFR 739
>sp|Q99767|APBA2_HUMAN Amyloid beta A4 precursor protein-binding family A member 2 OS=Homo
sapiens GN=APBA2 PE=1 SV=3
Length = 749
Score = 72.8 bits (177), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 84/172 (48%), Gaps = 8/172 (4%)
Query: 348 RELVLCKDASGLIGLRVCAINEG-----VFVCLVERGSPASLVG-LRFGDQILSINGETV 401
+EL L K ++G+ V G V + + G PA+ G L GDQI+SING ++
Sbjct: 567 KELQLEKHKGEILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSL 626
Query: 402 AGYNMKQVHKILKAAP-VNNIRVVIRDRPLERTVTLHR-DSSGHFGFHFNKGQIVSLVKD 459
G + I+K +++ I P TV + R D GF G I SL++
Sbjct: 627 VGLPLATCQGIIKGLKNQTQVKLNIVSCPPVTTVLIKRPDLKYQLGFSVQNGIICSLMRG 686
Query: 460 SSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPTSMYQ 511
A R G+ V H I+E+NG +VV +++++A+ + + +P +M++
Sbjct: 687 GIAERGGVRVGHRIIEINGQSVVATAHEKIVQALSNSVGEIHMKTMPAAMFR 738
>sp|O35430|APBA1_RAT Amyloid beta A4 precursor protein-binding family A member 1
OS=Rattus norvegicus GN=Apba1 PE=1 SV=1
Length = 839
Score = 69.3 bits (168), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 84/174 (48%), Gaps = 12/174 (6%)
Query: 348 RELVLCKDASGLIGLRVCAINEG-----VFVCLVERGSPASLVG-LRFGDQILSINGETV 401
+++ + K ++G+ + G V + + G PA G L GDQI+SING ++
Sbjct: 657 KDVFIEKQKGEILGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSL 716
Query: 402 AGYNMKQVHKILKAAPVNNIRV---VIRDRPLERTVTLHR-DSSGHFGFHFNKGQIVSLV 457
G + I+K N RV ++R P+ TV + R D GF G I SL+
Sbjct: 717 VGLPLSTCQSIIKGLK-NQSRVKLNIVRCPPV-TTVLIRRPDLRYQLGFSVQNGIICSLM 774
Query: 458 KDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPTSMYQ 511
+ A R G+ V H I+E+NG +VV ++++ + + + +P +MY+
Sbjct: 775 RGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKTMPAAMYR 828
>sp|B2RUJ5|APBA1_MOUSE Amyloid beta A4 precursor protein-binding family A member 1 OS=Mus
musculus GN=Apba1 PE=2 SV=2
Length = 842
Score = 69.3 bits (168), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 84/174 (48%), Gaps = 12/174 (6%)
Query: 348 RELVLCKDASGLIGLRVCAINEG-----VFVCLVERGSPASLVG-LRFGDQILSINGETV 401
+++ + K ++G+ + G V + + G PA G L GDQI+SING ++
Sbjct: 660 KDVFIEKQKGEILGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSL 719
Query: 402 AGYNMKQVHKILKAAPVNNIRV---VIRDRPLERTVTLHR-DSSGHFGFHFNKGQIVSLV 457
G + I+K N RV ++R P+ TV + R D GF G I SL+
Sbjct: 720 VGLPLSTCQSIIKGLK-NQSRVKLNIVRCPPV-TTVLIRRPDLRYQLGFSVQNGIICSLM 777
Query: 458 KDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPTSMYQ 511
+ A R G+ V H I+E+NG +VV ++++ + + + +P +MY+
Sbjct: 778 RGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKTMPAAMYR 831
>sp|Q02410|APBA1_HUMAN Amyloid beta A4 precursor protein-binding family A member 1 OS=Homo
sapiens GN=APBA1 PE=1 SV=3
Length = 837
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 84/174 (48%), Gaps = 12/174 (6%)
Query: 348 RELVLCKDASGLIGLRVCAINEG-----VFVCLVERGSPASLVG-LRFGDQILSINGETV 401
+++ + K ++G+ + G V + + G PA G L GDQI+SING ++
Sbjct: 655 KDVFIEKQKGEILGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSL 714
Query: 402 AGYNMKQVHKILKAAPVNNIRV---VIRDRPLERTVTLHR-DSSGHFGFHFNKGQIVSLV 457
G + I+K N RV ++R P+ TV + R D GF G I SL+
Sbjct: 715 VGLPLSTCQSIIKGLK-NQSRVKLNIVRCPPV-TTVLIRRPDLRYQLGFSVQNGIICSLM 772
Query: 458 KDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPTSMYQ 511
+ A R G+ V H I+E+NG +VV ++++ + + + +P +MY+
Sbjct: 773 RGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKTMPAAMYR 826
>sp|O17583|LIN10_CAEEL Protein lin-10 OS=Caenorhabditis elegans GN=lin-10 PE=1 SV=1
Length = 982
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 63/129 (48%), Gaps = 2/129 (1%)
Query: 387 LRFGDQILSINGETVAGYNMKQVHKILK-AAPVNNIRVVIRDRPLERTVTLHR-DSSGHF 444
L GDQI++ING ++ G + +K +R+ + P V + R D+
Sbjct: 845 LNIGDQIININGISLVGLPLSAAQTQIKNMKTATAVRMTVVSTPPVVEVRIRRPDTKYQL 904
Query: 445 GFHFNKGQIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTL 504
GF G I SL++ A R G+ V H I+E+NG +VV + ++ + + +
Sbjct: 905 GFSVQNGVICSLLRGGIAERGGIRVGHRIIEINGTSVVAVAHDRIVNMLATAVGEIHMKT 964
Query: 505 IPTSMYQHM 513
+PTSM++ +
Sbjct: 965 MPTSMFRLL 973
>sp|Q9Y566|SHAN1_HUMAN SH3 and multiple ankyrin repeat domains protein 1 OS=Homo sapiens
GN=SHANK1 PE=1 SV=2
Length = 2161
Score = 41.6 bits (96), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 46/102 (45%), Gaps = 19/102 (18%)
Query: 431 ERTVTLHRDSSGHFGFHFNKGQ-------------------IVSLVKDSSAARNGLLVNH 471
E+TV L + S FGF + + S+ + A R GL +
Sbjct: 661 EKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGD 720
Query: 472 NILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPTSMYQHM 513
++EVNG NVV + ++++ + +GG+ L + ++ + + M
Sbjct: 721 FLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTRHPDM 762
>sp|Q9VT65|CANB_DROME Calpain-B OS=Drosophila melanogaster GN=CalpB PE=1 SV=2
Length = 925
Score = 32.7 bits (73), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 55/142 (38%), Gaps = 41/142 (28%)
Query: 100 YYYSDIRANVPTGGSPVPSYPQGSYPSNPY-----------------QAQN-SYPS---- 137
Y +++ GG+P P G YPS PY AQN SY
Sbjct: 26 YSKNEVSGGNEGGGAPKPK--AGLYPSLPYPSSESVGGMPYVVKQTSHAQNASYAGPTMG 83
Query: 138 ----VPNQPQAPNTYPS---MPNQLQAPNGFYPLTSSQQASQASLPYPINPLASNKPSAP 190
VP P AP YPS P +G YP S A+ +SLPYP P+A P
Sbjct: 84 MGMPVPEAPSAPAPYPSATPYPG-----SGLYP--SLPSANVSSLPYPTAPMAPYPTGMP 136
Query: 191 QPPAYSVQPSHNTAYPTAPLVP 212
P P N YP APL P
Sbjct: 137 YPTG---MPQPNLPYPAAPLAP 155
>sp|P41809|HKR1_YEAST Signaling mucin HKR1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=HKR1 PE=2 SV=2
Length = 1802
Score = 32.7 bits (73), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 107/234 (45%), Gaps = 29/234 (12%)
Query: 32 SFSSPPPPVYQTSSHTSPNAYNNPPSPYHSANPPPYYQHPSVPSHPSVPTFPSAPIYPSA 91
SFSS P V T + +SP+A PS Y S+ P + S PS P S+ Y S+
Sbjct: 450 SFSSVPVAVSSTYT-SSPSASVVVPSAYASSPSVPVAVSSTYTSSPSAPAAISS-TYTSS 507
Query: 92 PPQESHSPYYYSDIRANVPTGGSPVPSYPQGSYPSNPYQAQNSYPSVPNQPQA-PNTYPS 150
P +P S + P+ + + S S PS P ++Y S P+ P A +TY S
Sbjct: 508 P----SAPVAVSSTYTSSPSAPAAISSTYTSS-PSAPVAVSSTYTSSPSAPAAISSTYTS 562
Query: 151 MPNQLQAPNGFYPLT-------SSQQASQASLPYPINPLASNKPSAPQPPAYSVQPSHNT 203
P+ A + Y + SS S S+P ++ ++ PSAP + S T
Sbjct: 563 SPSAPVAVSSTYTSSPSAPVAISSTYTSSPSVPVAVSSTYTSSPSAPAAIS-----STYT 617
Query: 204 AYPTAPL-VPSTIATAPSAPPANIEDATRSTHPTTATAPSVPPAIHDATRSTPS 256
+ P+AP+ V ST ++PSAP A T ++PSVP A+ S+PS
Sbjct: 618 SSPSAPVAVSSTYTSSPSAPAA--------ISSTYTSSPSVPVAVSSTYTSSPS 663
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.128 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 214,323,636
Number of Sequences: 539616
Number of extensions: 10349866
Number of successful extensions: 66360
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 3124
Number of HSP's that attempted gapping in prelim test: 38244
Number of HSP's gapped (non-prelim): 15332
length of query: 530
length of database: 191,569,459
effective HSP length: 122
effective length of query: 408
effective length of database: 125,736,307
effective search space: 51300413256
effective search space used: 51300413256
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 64 (29.3 bits)