Query psy9257
Match_columns 530
No_of_seqs 345 out of 2279
Neff 4.6
Searched_HMMs 46136
Date Fri Aug 16 22:49:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9257.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9257hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10139 serine endoprotease; 99.9 1E-23 2.3E-28 225.9 15.7 211 292-510 200-449 (455)
2 PRK10942 serine endoprotease; 99.9 8.1E-23 1.7E-27 220.0 15.8 210 292-509 221-466 (473)
3 TIGR02037 degP_htrA_DO peripla 99.9 1.4E-22 3.1E-27 214.4 14.6 211 292-510 167-423 (428)
4 KOG3209|consensus 99.8 9.8E-18 2.1E-22 183.2 15.5 161 349-510 652-840 (984)
5 KOG3605|consensus 99.7 3.1E-17 6.7E-22 178.2 9.6 173 344-516 643-823 (829)
6 KOG3209|consensus 99.7 2.4E-16 5.1E-21 172.6 16.0 157 349-507 756-982 (984)
7 PRK10779 zinc metallopeptidase 99.6 2.5E-14 5.3E-19 153.3 15.6 136 371-509 128-280 (449)
8 TIGR00054 RIP metalloprotease 99.5 4.8E-13 1E-17 142.5 14.1 130 369-509 128-262 (420)
9 PRK10898 serine endoprotease; 99.4 2.6E-13 5.7E-18 141.6 7.0 136 301-438 191-347 (353)
10 TIGR02038 protease_degS peripl 99.4 6.7E-13 1.5E-17 138.3 6.7 136 301-438 191-346 (351)
11 PF13180 PDZ_2: PDZ domain; PD 99.3 9.9E-12 2.1E-16 103.1 9.2 78 358-437 1-81 (82)
12 KOG3580|consensus 99.3 4E-11 8.6E-16 130.3 13.5 160 348-509 10-280 (1027)
13 PF00595 PDZ: PDZ domain (Also 99.2 6.1E-11 1.3E-15 97.7 10.6 77 349-426 1-81 (81)
14 COG0265 DegQ Trypsin-like seri 99.2 3.5E-11 7.5E-16 124.4 8.1 144 291-439 181-339 (347)
15 cd00988 PDZ_CTP_protease PDZ d 99.2 3E-10 6.5E-15 93.5 11.5 81 358-438 2-83 (85)
16 cd00136 PDZ PDZ domain, also c 99.1 7.6E-10 1.7E-14 87.9 9.7 68 359-426 2-70 (70)
17 KOG3580|consensus 99.0 1.1E-09 2.5E-14 119.2 11.9 149 354-506 207-488 (1027)
18 cd00989 PDZ_metalloprotease PD 99.0 1.8E-09 3.9E-14 87.6 9.7 77 359-437 2-78 (79)
19 PF00595 PDZ: PDZ domain (Also 99.0 1.8E-09 3.8E-14 89.0 9.6 73 433-505 1-81 (81)
20 cd00992 PDZ_signaling PDZ doma 99.0 4.2E-09 9.1E-14 85.6 10.7 77 348-425 2-81 (82)
21 smart00228 PDZ Domain present 99.0 8.9E-09 1.9E-13 83.5 11.3 78 349-428 4-84 (85)
22 cd00990 PDZ_glycyl_aminopeptid 98.9 7.5E-09 1.6E-13 84.4 9.9 74 359-437 2-76 (80)
23 cd00991 PDZ_archaeal_metallopr 98.9 1.3E-08 2.7E-13 84.3 8.9 68 368-437 9-77 (79)
24 cd00987 PDZ_serine_protease PD 98.9 2E-08 4.3E-13 83.0 9.9 65 369-435 24-89 (90)
25 COG0793 Prc Periplasmic protea 98.7 6.5E-08 1.4E-12 103.5 10.4 86 353-438 95-183 (406)
26 PLN00049 carboxyl-terminal pro 98.7 1.1E-07 2.4E-12 100.8 11.9 84 355-438 82-171 (389)
27 TIGR03279 cyano_FeS_chp putati 98.7 9.8E-08 2.1E-12 102.6 11.6 139 373-516 2-160 (433)
28 TIGR00225 prc C-terminal pepti 98.7 9.7E-08 2.1E-12 98.9 10.9 76 356-431 49-124 (334)
29 cd00986 PDZ_LON_protease PDZ d 98.6 1.6E-07 3.5E-12 77.1 9.2 67 368-437 7-74 (79)
30 cd00992 PDZ_signaling PDZ doma 98.6 3.7E-07 8E-12 74.2 10.3 72 433-504 3-81 (82)
31 smart00228 PDZ Domain present 98.6 8.7E-07 1.9E-11 71.8 10.8 74 433-507 4-84 (85)
32 cd00136 PDZ PDZ domain, also c 98.5 1E-06 2.3E-11 69.9 8.8 61 444-504 3-69 (70)
33 PF13180 PDZ_2: PDZ domain; PD 98.5 5.2E-07 1.1E-11 74.8 7.3 58 453-512 18-77 (82)
34 TIGR01713 typeII_sec_gspC gene 98.4 1.2E-06 2.6E-11 88.7 10.3 80 355-436 174-257 (259)
35 KOG3549|consensus 98.4 6.9E-07 1.5E-11 93.2 8.5 77 429-505 53-137 (505)
36 PRK11186 carboxy-terminal prot 98.4 1E-06 2.2E-11 99.5 10.6 84 355-438 241-333 (667)
37 TIGR00054 RIP metalloprotease 98.4 1.3E-06 2.7E-11 93.7 9.5 70 369-440 203-272 (420)
38 KOG3834|consensus 98.4 2.9E-06 6.4E-11 90.5 11.7 136 368-508 14-168 (462)
39 COG3975 Predicted protease wit 98.4 1.1E-06 2.3E-11 96.0 8.6 135 281-440 380-524 (558)
40 PF04495 GRASP55_65: GRASP55/6 98.3 8.7E-06 1.9E-10 75.6 12.7 105 345-451 9-130 (138)
41 TIGR02860 spore_IV_B stage IV 98.3 3.2E-06 6.9E-11 90.5 11.1 87 358-448 96-195 (402)
42 KOG3550|consensus 98.3 2E-06 4.4E-11 81.1 8.0 79 348-428 92-174 (207)
43 KOG3550|consensus 98.3 1.6E-06 3.5E-11 81.7 6.9 87 430-517 90-185 (207)
44 PRK10779 zinc metallopeptidase 98.3 2.1E-06 4.6E-11 92.6 8.6 78 360-439 212-289 (449)
45 TIGR02037 degP_htrA_DO peripla 98.3 3.6E-06 7.7E-11 90.0 9.8 76 358-435 338-427 (428)
46 KOG3551|consensus 98.2 1.2E-06 2.6E-11 92.5 4.9 76 431-506 85-168 (506)
47 cd00988 PDZ_CTP_protease PDZ d 98.2 5.9E-06 1.3E-10 68.0 8.0 65 443-507 3-72 (85)
48 KOG3553|consensus 98.2 2.4E-06 5.2E-11 75.7 5.2 68 359-428 36-116 (124)
49 PF14685 Tricorn_PDZ: Tricorn 98.1 2E-05 4.3E-10 68.2 10.2 76 358-435 1-87 (88)
50 PRK10942 serine endoprotease; 98.1 1.2E-05 2.6E-10 87.7 9.6 65 369-436 408-472 (473)
51 cd00991 PDZ_archaeal_metallopr 98.1 1.2E-05 2.5E-10 66.6 7.3 54 453-508 14-69 (79)
52 PRK10139 serine endoprotease; 98.1 1.2E-05 2.5E-10 87.4 8.9 65 369-436 390-454 (455)
53 cd00989 PDZ_metalloprotease PD 98.1 2.4E-05 5.1E-10 63.4 8.4 55 452-508 15-70 (79)
54 KOG3549|consensus 98.0 1.1E-05 2.4E-10 84.5 7.5 80 346-426 54-137 (505)
55 KOG3551|consensus 98.0 7E-06 1.5E-10 86.8 5.7 78 348-426 86-167 (506)
56 TIGR02038 protease_degS peripl 97.9 3.1E-05 6.7E-10 81.3 9.1 56 453-510 282-339 (351)
57 KOG1421|consensus 97.9 5.8E-05 1.3E-09 84.5 11.3 127 369-502 302-455 (955)
58 KOG0609|consensus 97.9 5.2E-05 1.1E-09 83.1 10.6 85 343-428 119-205 (542)
59 cd00990 PDZ_glycyl_aminopeptid 97.9 4.2E-05 9E-10 62.3 7.3 64 444-510 3-70 (80)
60 cd00987 PDZ_serine_protease PD 97.9 4.5E-05 9.7E-10 63.0 7.3 54 453-508 28-83 (90)
61 KOG1320|consensus 97.9 2E-05 4.4E-10 85.8 6.6 137 301-439 297-467 (473)
62 KOG3651|consensus 97.8 3.5E-05 7.7E-10 79.5 7.0 77 349-426 7-87 (429)
63 KOG3606|consensus 97.8 7.1E-05 1.5E-09 76.4 8.5 89 339-428 151-253 (358)
64 PRK10898 serine endoprotease; 97.8 0.00014 3E-09 76.7 10.7 56 453-510 283-340 (353)
65 KOG1892|consensus 97.8 6.2E-05 1.4E-09 86.5 8.0 80 347-429 934-1020(1629)
66 TIGR01713 typeII_sec_gspC gene 97.6 0.00027 5.8E-09 71.8 9.7 56 453-510 195-252 (259)
67 cd00986 PDZ_LON_protease PDZ d 97.6 0.00015 3.3E-09 59.4 6.5 54 453-509 12-67 (79)
68 KOG1892|consensus 97.6 9.4E-05 2E-09 85.1 6.9 78 430-509 933-1021(1629)
69 COG0793 Prc Periplasmic protea 97.6 0.0001 2.2E-09 79.2 6.5 76 442-517 100-181 (406)
70 TIGR00225 prc C-terminal pepti 97.6 0.00015 3.3E-09 75.2 7.0 66 443-508 52-122 (334)
71 KOG3651|consensus 97.5 0.00031 6.8E-09 72.7 7.5 74 431-504 5-86 (429)
72 KOG3571|consensus 97.4 0.00028 6.1E-09 77.0 7.1 79 349-427 252-338 (626)
73 PLN00049 carboxyl-terminal pro 97.4 0.00051 1.1E-08 73.2 9.0 56 453-508 106-162 (389)
74 KOG1421|consensus 97.4 0.0011 2.3E-08 74.8 11.5 111 371-495 773-905 (955)
75 KOG3552|consensus 97.4 0.00021 4.6E-09 82.1 6.0 75 347-427 56-131 (1298)
76 KOG3938|consensus 97.4 0.00046 9.9E-09 70.4 7.4 93 332-425 109-207 (334)
77 KOG3129|consensus 97.4 0.00074 1.6E-08 66.9 8.6 79 370-448 140-222 (231)
78 KOG3542|consensus 97.3 0.0002 4.3E-09 80.2 4.7 84 343-428 532-619 (1283)
79 KOG1320|consensus 97.3 0.0019 4.2E-08 70.7 11.5 135 369-508 287-457 (473)
80 KOG3553|consensus 97.3 0.00036 7.8E-09 62.2 4.6 43 453-495 63-105 (124)
81 KOG3542|consensus 97.1 0.0018 3.8E-08 72.9 8.5 79 428-507 533-619 (1283)
82 KOG3552|consensus 96.9 0.001 2.2E-08 76.8 5.2 74 431-507 56-132 (1298)
83 KOG3606|consensus 96.9 0.0017 3.7E-08 66.6 6.2 58 453-510 198-256 (358)
84 PF04495 GRASP55_65: GRASP55/6 96.9 0.0082 1.8E-07 55.9 10.1 79 428-508 8-102 (138)
85 KOG0609|consensus 96.9 0.0022 4.8E-08 70.7 7.1 78 432-509 124-207 (542)
86 PRK09681 putative type II secr 96.9 0.0055 1.2E-07 63.2 9.6 53 382-436 220-273 (276)
87 KOG3938|consensus 96.8 0.0018 3.8E-08 66.3 5.5 120 380-506 81-209 (334)
88 PRK11186 carboxy-terminal prot 96.8 0.0027 5.8E-08 72.5 7.4 65 443-507 245-320 (667)
89 COG0265 DegQ Trypsin-like seri 96.8 0.0086 1.9E-07 62.3 10.4 68 444-513 264-334 (347)
90 KOG3571|consensus 96.8 0.0026 5.6E-08 69.7 6.6 77 431-507 250-339 (626)
91 KOG4407|consensus 96.7 0.0014 3E-08 77.8 4.7 107 370-509 97-203 (1973)
92 KOG4371|consensus 96.7 0.0027 5.9E-08 74.1 6.7 135 358-493 1158-1315(1332)
93 KOG3605|consensus 96.7 0.003 6.4E-08 71.0 6.4 75 432-506 647-733 (829)
94 TIGR02860 spore_IV_B stage IV 96.3 0.012 2.6E-07 63.6 8.2 49 459-509 123-172 (402)
95 TIGR03279 cyano_FeS_chp putati 96.3 0.0058 1.3E-07 66.4 5.9 49 453-505 2-50 (433)
96 PF14685 Tricorn_PDZ: Tricorn 96.1 0.025 5.5E-07 49.0 7.7 55 453-509 16-81 (88)
97 KOG0606|consensus 95.9 0.016 3.5E-07 68.6 7.4 55 453-507 662-716 (1205)
98 COG3480 SdrC Predicted secrete 95.8 0.029 6.4E-07 58.9 8.0 79 369-449 130-214 (342)
99 KOG0606|consensus 95.8 0.024 5.2E-07 67.2 8.1 74 350-425 630-713 (1205)
100 COG3031 PulC Type II secretory 95.4 0.046 9.9E-07 55.6 7.4 70 356-436 203-273 (275)
101 KOG3532|consensus 95.3 0.043 9.4E-07 62.3 7.4 70 353-424 381-451 (1051)
102 KOG3834|consensus 94.3 0.16 3.5E-06 55.2 8.4 105 345-451 76-196 (462)
103 PRK09681 putative type II secr 94.0 0.17 3.8E-06 52.3 7.7 61 443-510 206-268 (276)
104 COG0750 Predicted membrane-ass 93.8 0.29 6.2E-06 51.1 9.0 51 375-427 135-188 (375)
105 KOG3129|consensus 93.7 0.15 3.3E-06 51.0 6.3 57 452-508 142-200 (231)
106 COG3975 Predicted protease wit 93.6 0.16 3.4E-06 56.6 6.7 39 441-479 450-492 (558)
107 COG3031 PulC Type II secretory 93.3 0.97 2.1E-05 46.3 11.3 62 443-511 206-269 (275)
108 KOG3532|consensus 92.9 0.25 5.4E-06 56.5 7.2 68 438-507 382-454 (1051)
109 PF12812 PDZ_1: PDZ-like domai 90.0 1.4 2.9E-05 37.4 7.0 43 451-495 32-74 (78)
110 PF12812 PDZ_1: PDZ-like domai 89.6 0.86 1.9E-05 38.6 5.6 47 369-417 30-76 (78)
111 KOG1738|consensus 88.9 0.55 1.2E-05 53.2 5.0 69 357-426 212-282 (638)
112 KOG1738|consensus 87.0 0.72 1.6E-05 52.3 4.4 67 442-508 213-285 (638)
113 PF11874 DUF3394: Domain of un 82.5 1.9 4E-05 42.4 4.6 38 360-397 113-150 (183)
114 COG3480 SdrC Predicted secrete 80.5 3.7 8.1E-05 43.6 6.2 52 453-507 134-187 (342)
115 KOG0307|consensus 76.0 59 0.0013 39.7 14.7 21 165-185 829-849 (1049)
116 COG5233 GRH1 Peripheral Golgi 76.0 3.9 8.6E-05 43.5 4.8 45 358-402 52-96 (417)
117 PF11874 DUF3394: Domain of un 75.9 18 0.00038 35.8 9.0 71 407-477 63-150 (183)
118 COG0750 Predicted membrane-ass 74.7 7.3 0.00016 40.7 6.5 53 452-506 132-188 (375)
119 KOG2921|consensus 69.9 5.2 0.00011 43.8 4.0 46 368-415 219-265 (484)
120 COG5233 GRH1 Peripheral Golgi 69.7 4.9 0.00011 42.8 3.7 88 393-482 3-96 (417)
121 KOG2199|consensus 66.2 20 0.00044 39.4 7.5 65 66-141 370-441 (462)
122 KOG4371|consensus 66.2 5.4 0.00012 48.0 3.6 81 346-427 1245-1328(1332)
123 COG1625 Fe-S oxidoreductase, r 52.1 38 0.00081 37.4 6.7 127 372-507 4-146 (414)
124 KOG4407|consensus 51.8 7.6 0.00017 47.9 1.6 56 369-425 143-198 (1973)
125 KOG0117|consensus 36.9 3.5E+02 0.0077 30.5 11.1 26 402-427 174-199 (506)
126 PF07591 PT-HINT: Pretoxin HIN 27.4 27 0.00058 32.1 0.8 16 466-481 76-91 (130)
127 KOG0792|consensus 27.1 55 0.0012 40.0 3.4 79 434-512 708-818 (1144)
128 COG3127 Predicted ABC-type tra 25.3 76 0.0016 37.7 4.0 25 458-482 602-627 (829)
129 KOG1985|consensus 23.2 1.2E+03 0.026 28.4 13.0 21 242-262 136-156 (887)
130 COG0034 PurF Glutamine phospho 21.5 1.6E+02 0.0035 33.1 5.4 37 469-505 347-384 (470)
131 KOG0792|consensus 21.2 41 0.0009 41.0 0.9 61 356-416 714-797 (1144)
132 PF14179 YppG: YppG-like prote 20.7 3.3E+02 0.0071 25.1 6.4 32 133-164 52-83 (112)
133 PF01887 SAM_adeno_trans: S-ad 20.4 2.1E+02 0.0045 29.6 5.6 57 416-474 195-257 (258)
134 PF15471 TMEM171: Transmembran 20.2 1.1E+02 0.0023 32.4 3.4 10 60-69 246-255 (319)
No 1
>PRK10139 serine endoprotease; Provisional
Probab=99.91 E-value=1e-23 Score=225.91 Aligned_cols=211 Identities=22% Similarity=0.295 Sum_probs=171.6
Q ss_pred hHHHHHHHHhhcccccccccccccccCCCCCCCCceeecCCCCccceechhcccccceEEE-----eccCCCeeEEEEEe
Q psy9257 292 SELINAYARENAANERESDAAGNTVARQAPRDSCTMIAPLSSSGSGLKKAYVTNGIRELVL-----CKDASGLIGLRVCA 366 (530)
Q Consensus 292 ed~Iqa~~~~~~ai~p~~~~~~av~~~~~~~~s~gilapvSG~svGIgfAi~~~~Vr~V~L-----~K~s~G~LG~~V~~ 366 (530)
++.|| +|+++++||+++++++..|+..+++..+..-+|+..|++||++.+.++.+.. ++..++|||+.+..
T Consensus 200 ~~~iq----tda~in~GnSGGpl~n~~G~vIGi~~~~~~~~~~~~gigfaIP~~~~~~v~~~l~~~g~v~r~~LGv~~~~ 275 (455)
T PRK10139 200 ENFIQ----TDASINRGNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDFGEIKRGLLGIKGTE 275 (455)
T ss_pred ceEEE----ECCccCCCCCcceEECCCCeEEEEEEEEEcCCCCccceEEEEEhHHHHHHHHHHhhcCcccccceeEEEEE
Confidence 44577 9999999999999999999999998776655778899999998888776542 56778999999876
Q ss_pred c------------CCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHh-CCCCeEEEEEecCCceee
Q psy9257 367 I------------NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKA-APVNNIRVVIRDRPLERT 433 (530)
Q Consensus 367 ~------------~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~-a~G~~VtLtVrR~~~e~t 433 (530)
. ..|++|..|.++|+|+++||+.||+|++|||+.+.+|.+ +.+.+.. ..++.+.|+|.|++++++
T Consensus 276 l~~~~~~~lgl~~~~Gv~V~~V~~~SpA~~AGL~~GDvIl~InG~~V~s~~d--l~~~l~~~~~g~~v~l~V~R~G~~~~ 353 (455)
T PRK10139 276 MSADIAKAFNLDVQRGAFVSEVLPNSGSAKAGVKAGDIITSLNGKPLNSFAE--LRSRIATTEPGTKVKLGLLRNGKPLE 353 (455)
T ss_pred CCHHHHHhcCCCCCCceEEEEECCCChHHHCCCCCCCEEEEECCEECCCHHH--HHHHHHhcCCCCEEEEEEEECCEEEE
Confidence 3 269999999999999999999999999999999999866 5555544 667889999999988877
Q ss_pred EEeccCCC-----Cc-------cceeec--------cCc-EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHH
Q psy9257 434 VTLHRDSS-----GH-------FGFHFN--------KGQ-IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEA 492 (530)
Q Consensus 434 VtL~kd~~-----g~-------LGfs~~--------~Gv-V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~i 492 (530)
+++..+.. .. .|+.+. .|. |.+|.++++|+++||+.||+|++|||+++.++ +++...
T Consensus 354 l~v~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~Gv~V~~V~~~spA~~aGL~~GD~I~~Ing~~v~~~--~~~~~~ 431 (455)
T PRK10139 354 VEVTLDTSTSSSASAEMITPALQGATLSDGQLKDGTKGIKIDEVVKGSPAAQAGLQKDDVIIGVNRDRVNSI--AEMRKV 431 (455)
T ss_pred EEEEECCCCCcccccccccccccccEecccccccCCCceEEEEeCCCChHHHcCCCCCCEEEEECCEEcCCH--HHHHHH
Confidence 76643211 11 222222 233 88999999999999999999999999999988 578888
Q ss_pred HHhCCCEEEEEEEeCcch
Q psy9257 493 MEKGGSVLTLTLIPTSMY 510 (530)
Q Consensus 493 LkrsG~tVtLtVip~~~~ 510 (530)
+++..+.+.|+|.|....
T Consensus 432 l~~~~~~v~l~v~R~g~~ 449 (455)
T PRK10139 432 LAAKPAIIALQIVRGNES 449 (455)
T ss_pred HHhCCCeEEEEEEECCEE
Confidence 886668899999887643
No 2
>PRK10942 serine endoprotease; Provisional
Probab=99.89 E-value=8.1e-23 Score=220.04 Aligned_cols=210 Identities=20% Similarity=0.240 Sum_probs=169.9
Q ss_pred hHHHHHHHHhhcccccccccccccccCCCCCCCCceeecCCCCccceechhcccccceEE-----EeccCCCeeEEEEEe
Q psy9257 292 SELINAYARENAANERESDAAGNTVARQAPRDSCTMIAPLSSSGSGLKKAYVTNGIRELV-----LCKDASGLIGLRVCA 366 (530)
Q Consensus 292 ed~Iqa~~~~~~ai~p~~~~~~av~~~~~~~~s~gilapvSG~svGIgfAi~~~~Vr~V~-----L~K~s~G~LG~~V~~ 366 (530)
++.|| +|+++++|++++.+++..|+..+++..+..-+|+..|++||++.+.++.+. -++..++|||+.+..
T Consensus 221 ~~~iq----tda~i~~GnSGGpL~n~~GeviGI~t~~~~~~g~~~g~gfaIP~~~~~~v~~~l~~~g~v~rg~lGv~~~~ 296 (473)
T PRK10942 221 ENFIQ----TDAAINRGNSGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVEYGQVKRGELGIMGTE 296 (473)
T ss_pred cceEE----eccccCCCCCcCccCCCCCeEEEEEEEEEcCCCCcccEEEEEEHHHHHHHHHHHHhccccccceeeeEeee
Confidence 45677 999999999999999999999999877666578889999999877766443 256788999999875
Q ss_pred c------------CCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHH-HhCCCCeEEEEEecCCceee
Q psy9257 367 I------------NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKIL-KAAPVNNIRVVIRDRPLERT 433 (530)
Q Consensus 367 ~------------~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LL-k~a~G~~VtLtVrR~~~e~t 433 (530)
. ..|++|..|.++|+|+++||+.||+|++|||+.|.++.+ +...+ ....++.+.|+|.|+++.++
T Consensus 297 l~~~~a~~~~l~~~~GvlV~~V~~~SpA~~AGL~~GDvIl~InG~~V~s~~d--l~~~l~~~~~g~~v~l~v~R~G~~~~ 374 (473)
T PRK10942 297 LNSELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAA--LRAQVGTMPVGSKLTLGLLRDGKPVN 374 (473)
T ss_pred cCHHHHHhcCCCCCCceEEEEECCCChHHHcCCCCCCEEEEECCEECCCHHH--HHHHHHhcCCCCEEEEEEEECCeEEE
Confidence 3 269999999999999999999999999999999999865 44444 34567889999999888777
Q ss_pred EEeccCC---------CCccceeec--------cCc-EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHh
Q psy9257 434 VTLHRDS---------SGHFGFHFN--------KGQ-IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEK 495 (530)
Q Consensus 434 VtL~kd~---------~g~LGfs~~--------~Gv-V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkr 495 (530)
+.+.... ...+|+... .|. |.+|.++++|+++||+.||+|++|||++|.++ +++.+++++
T Consensus 375 v~v~l~~~~~~~~~~~~~~lGl~g~~l~~~~~~~gvvV~~V~~~S~A~~aGL~~GDvIv~VNg~~V~s~--~dl~~~l~~ 452 (473)
T PRK10942 375 VNVELQQSSQNQVDSSNIFNGIEGAELSNKGGDKGVVVDNVKPGTPAAQIGLKKGDVIIGANQQPVKNI--AELRKILDS 452 (473)
T ss_pred EEEEeCcCcccccccccccccceeeecccccCCCCeEEEEeCCCChHHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHh
Confidence 6653211 112454322 233 88999999999999999999999999999998 578888887
Q ss_pred CCCEEEEEEEeCcc
Q psy9257 496 GGSVLTLTLIPTSM 509 (530)
Q Consensus 496 sG~tVtLtVip~~~ 509 (530)
.++.+.|+|.|...
T Consensus 453 ~~~~v~l~V~R~g~ 466 (473)
T PRK10942 453 KPSVLALNIQRGDS 466 (473)
T ss_pred CCCeEEEEEEECCE
Confidence 67889999988764
No 3
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=99.88 E-value=1.4e-22 Score=214.43 Aligned_cols=211 Identities=26% Similarity=0.366 Sum_probs=170.3
Q ss_pred hHHHHHHHHhhcccccccccccccccCCCCCCCCceeecCCCCccceechhcccccceEEE-----eccCCCeeEEEEEe
Q psy9257 292 SELINAYARENAANERESDAAGNTVARQAPRDSCTMIAPLSSSGSGLKKAYVTNGIRELVL-----CKDASGLIGLRVCA 366 (530)
Q Consensus 292 ed~Iqa~~~~~~ai~p~~~~~~av~~~~~~~~s~gilapvSG~svGIgfAi~~~~Vr~V~L-----~K~s~G~LG~~V~~ 366 (530)
++.|+ +++++++|++++++++..|+..+++..+..-+|+..|++||++.+.++.+.. ++..++|||+++..
T Consensus 167 ~~~i~----tda~i~~GnSGGpl~n~~G~viGI~~~~~~~~g~~~g~~faiP~~~~~~~~~~l~~~g~~~~~~lGi~~~~ 242 (428)
T TIGR02037 167 ENFIQ----TDAAINPGNSGGPLVNLRGEVIGINTAIYSPSGGNVGIGFAIPSNMAKNVVDQLIEGGKVQRGWLGVTIQE 242 (428)
T ss_pred cceEE----ECCCCCCCCCCCceECCCCeEEEEEeEEEcCCCCccceEEEEEhHHHHHHHHHHHhcCcCcCCcCceEeec
Confidence 44566 8999999999999999999999997776655777899999998766665543 45668999999987
Q ss_pred cC------------CcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHH-hCCCCeEEEEEecCCceee
Q psy9257 367 IN------------EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILK-AAPVNNIRVVIRDRPLERT 433 (530)
Q Consensus 367 ~~------------~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk-~a~G~~VtLtVrR~~~e~t 433 (530)
.+ .|++|..|.++|+|+++||+.||+|++|||+.+.++.+ +..++. ...++.+.|+|.|++++++
T Consensus 243 ~~~~~~~~lgl~~~~Gv~V~~V~~~spA~~aGL~~GDvI~~Vng~~i~~~~~--~~~~l~~~~~g~~v~l~v~R~g~~~~ 320 (428)
T TIGR02037 243 VTSDLAKSLGLEKQRGALVAQVLPGSPAEKAGLKAGDVILSVNGKPISSFAD--LRRAIGTLKPGKKVTLGILRKGKEKT 320 (428)
T ss_pred CCHHHHHHcCCCCCCceEEEEccCCCChHHcCCCCCCEEEEECCEEcCCHHH--HHHHHHhcCCCCEEEEEEEECCEEEE
Confidence 43 78999999999999999999999999999999998765 445554 3567899999999888877
Q ss_pred EEecc--C-------CCCccceeec----------------cCc-EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChH
Q psy9257 434 VTLHR--D-------SSGHFGFHFN----------------KGQ-IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDK 487 (530)
Q Consensus 434 VtL~k--d-------~~g~LGfs~~----------------~Gv-V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~e 487 (530)
+++.- . ....+|+.+. .|. |.+|.++++|+++||+.||+|++|||++|.++ +
T Consensus 321 ~~v~l~~~~~~~~~~~~~~lGi~~~~l~~~~~~~~~l~~~~~Gv~V~~V~~~SpA~~aGL~~GDvI~~Ing~~V~s~--~ 398 (428)
T TIGR02037 321 ITVTLGASPEEQASSSNPFLGLTVANLSPEIRKELRLKGDVKGVVVTKVVSGSPAARAGLQPGDVILSVNQQPVSSV--A 398 (428)
T ss_pred EEEEECcCCCccccccccccceEEecCCHHHHHHcCCCcCcCceEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCH--H
Confidence 66542 1 1123666553 244 88999999999999999999999999999987 5
Q ss_pred HHHHHHHh--CCCEEEEEEEeCcch
Q psy9257 488 ELLEAMEK--GGSVLTLTLIPTSMY 510 (530)
Q Consensus 488 eVv~iLkr--sG~tVtLtVip~~~~ 510 (530)
++..++++ .++.+.|+|.|....
T Consensus 399 d~~~~l~~~~~g~~v~l~v~R~g~~ 423 (428)
T TIGR02037 399 ELRKVLDRAKKGGRVALLILRGGAT 423 (428)
T ss_pred HHHHHHHhcCCCCEEEEEEEECCEE
Confidence 68888874 578999999987643
No 4
>KOG3209|consensus
Probab=99.75 E-value=9.8e-18 Score=183.25 Aligned_cols=161 Identities=28% Similarity=0.484 Sum_probs=139.4
Q ss_pred eEEEeccCCCeeEEEEEecC---CcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCC-CeEEE
Q psy9257 349 ELVLCKDASGLIGLRVCAIN---EGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPV-NNIRV 423 (530)
Q Consensus 349 ~V~L~K~s~G~LG~~V~~~~---~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G-~~VtL 423 (530)
.|.|.+.+.| |||++-+++ ..++|..|.+.++|++.| |+.||.|+.|||..|.+.++.++..++..+.. .-|.|
T Consensus 652 dV~L~rkesG-FGFRiLGG~ep~qpi~iG~Iv~lGaAe~DGRL~~gDElv~iDG~pV~GksH~~vv~Lm~~AArnghV~L 730 (984)
T KOG3209|consen 652 DVFLRRKESG-FGFRILGGDEPGQPIYIGAIVPLGAAEEDGRLREGDELVCIDGIPVEGKSHSEVVDLMEAAARNGHVNL 730 (984)
T ss_pred eEEEEeeccc-cceEEecCCCCCCeeEEeeeeecccccccCcccCCCeEEEecCeeccCccHHHHHHHHHHHHhcCceEE
Confidence 4556665555 999998765 569999999999999999 99999999999999999999999999976543 56999
Q ss_pred EEecCC----------------ceeeEEeccCCCCccceeeccC------cEEEEccCCHHHHcC-CCCCCEEEEEcCee
Q psy9257 424 VIRDRP----------------LERTVTLHRDSSGHFGFHFNKG------QIVSLVKDSSAARNG-LLVNHNILEVNGAN 480 (530)
Q Consensus 424 tVrR~~----------------~e~tVtL~kd~~g~LGfs~~~G------vV~sVv~gSpAarAG-Lr~GDrILeVNGq~ 480 (530)
+|||.- -...|.|+++..+.|||.+... -|..|..||+|+|+| |++||+|++|||+.
T Consensus 731 tVRRkv~~~~~~rsp~~s~~~~~~yDV~lhR~ENeGFGFVi~sS~~kp~sgiGrIieGSPAdRCgkLkVGDrilAVNG~s 810 (984)
T KOG3209|consen 731 TVRRKVRTGPARRSPRNSAAPSGPYDVVLHRKENEGFGFVIMSSQNKPESGIGRIIEGSPADRCGKLKVGDRILAVNGQS 810 (984)
T ss_pred EEeeeeeeccccCCcccccCCCCCeeeEEecccCCceeEEEEecccCCCCCccccccCChhHhhccccccceEEEecCee
Confidence 999831 1356888999888899998522 299999999999999 99999999999999
Q ss_pred cCCCChHHHHHHHHhCCCEEEEEEEeCcch
Q psy9257 481 VVGLKDKELLEAMEKGGSVLTLTLIPTSMY 510 (530)
Q Consensus 481 V~gls~eeVv~iLkrsG~tVtLtVip~~~~ 510 (530)
+.++++.+++.+|+.+|-+|+|+|++....
T Consensus 811 I~~lsHadiv~LIKdaGlsVtLtIip~ee~ 840 (984)
T KOG3209|consen 811 ILNLSHADIVSLIKDAGLSVTLTIIPPEEA 840 (984)
T ss_pred eeccCchhHHHHHHhcCceEEEEEcChhcc
Confidence 999999999999999999999999987644
No 5
>KOG3605|consensus
Probab=99.70 E-value=3.1e-17 Score=178.21 Aligned_cols=173 Identities=28% Similarity=0.510 Sum_probs=152.3
Q ss_pred ccccceEEEeccCCCeeEEEEEecCCc-----EEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCC
Q psy9257 344 TNGIRELVLCKDASGLIGLRVCAINEG-----VFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAP 417 (530)
Q Consensus 344 ~~~Vr~V~L~K~s~G~LG~~V~~~~~G-----V~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~ 417 (530)
+...|+|.+-|.++..||+.+...+.| |+|.....+++|+++| |..||+|++|||..+-++.....+.++|+.+
T Consensus 643 kE~qKEVvv~K~kGEiLGVViVESGWGSmLPTVViAnmm~~GpAarsgkLnIGDQiiaING~SLVGLPLstcQs~Ik~~K 722 (829)
T KOG3605|consen 643 KENQKEVVLEKHKGEILGVVIVESGWGSILPTVVIANMMHGGPAARSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLK 722 (829)
T ss_pred hcccceeeeecccCceeeEEEEecCccccchHHHHHhcccCChhhhcCCccccceeEeecCceeccccHHHHHHHHhccc
Confidence 456677888888888899999886654 7788899999999999 9999999999999999999988888998766
Q ss_pred C-CeEEEEEecCCceeeEEecc-CCCCccceeeccCcEEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHh
Q psy9257 418 V-NNIRVVIRDRPLERTVTLHR-DSSGHFGFHFNKGQIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEK 495 (530)
Q Consensus 418 G-~~VtLtVrR~~~e~tVtL~k-d~~g~LGfs~~~GvV~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkr 495 (530)
. ..|+|+|.+.+-..+|.|++ +....|||++.+|+|-++..|+.|+|.|+|+|++|++|||+.|.-..++.|+.+|..
T Consensus 723 nQT~VkltiV~cpPV~~V~I~RPd~kyQLGFSVQNGiICSLlRGGIAERGGVRVGHRIIEINgQSVVA~pHekIV~lLs~ 802 (829)
T KOG3605|consen 723 NQTAVKLNIVSCPPVTTVLIRRPDLRYQLGFSVQNGIICSLLRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVQLLSN 802 (829)
T ss_pred ccceEEEEEecCCCceEEEeecccchhhccceeeCcEeehhhcccchhccCceeeeeEEEECCceEEeccHHHHHHHHHH
Confidence 4 67899999887777777765 667789999999999999999999999999999999999999999999999999998
Q ss_pred CCCEEEEEEEeCcchhhhhhc
Q psy9257 496 GGSVLTLTLIPTSMYQHMMKK 516 (530)
Q Consensus 496 sG~tVtLtVip~~~~e~m~kk 516 (530)
+=++|.+..+|...++.++..
T Consensus 803 aVGEIhMKTMPasMfRLLTGQ 823 (829)
T KOG3605|consen 803 AVGEIHMKTMPAAMFRLLTGQ 823 (829)
T ss_pred hhhhhhhhcchHHHHHHhhcC
Confidence 888888888888877776654
No 6
>KOG3209|consensus
Probab=99.70 E-value=2.4e-16 Score=172.59 Aligned_cols=157 Identities=27% Similarity=0.480 Sum_probs=131.3
Q ss_pred eEEEeccCCCeeEEEEEecC--CcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEE
Q psy9257 349 ELVLCKDASGLIGLRVCAIN--EGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVI 425 (530)
Q Consensus 349 ~V~L~K~s~G~LG~~V~~~~--~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtV 425 (530)
.|.+.+.++.+|||.+.... .+--|.+|.+||||++|| |+.||+|++|||+.|.++++.....++|.+ |..|+|+|
T Consensus 756 DV~lhR~ENeGFGFVi~sS~~kp~sgiGrIieGSPAdRCgkLkVGDrilAVNG~sI~~lsHadiv~LIKda-GlsVtLtI 834 (984)
T KOG3209|consen 756 DVVLHRKENEGFGFVIMSSQNKPESGIGRIIEGSPADRCGKLKVGDRILAVNGQSILNLSHADIVSLIKDA-GLSVTLTI 834 (984)
T ss_pred eeEEecccCCceeEEEEecccCCCCCccccccCChhHhhccccccceEEEecCeeeeccCchhHHHHHHhc-CceEEEEE
Confidence 35566777888999887632 233499999999999999 999999999999999999999999999775 78899988
Q ss_pred ecCC-----------------------------------------------------------ceeeEEeccCCCCccce
Q psy9257 426 RDRP-----------------------------------------------------------LERTVTLHRDSSGHFGF 446 (530)
Q Consensus 426 rR~~-----------------------------------------------------------~e~tVtL~kd~~g~LGf 446 (530)
.-.. .-.+|+|.+...+ |||
T Consensus 835 ip~ee~~~~~~~~sa~~~s~~t~~~~~~q~~glp~~~~s~~~~~pqpdt~~~~~~~~r~~qn~~~~~VelErG~kG-FGF 913 (984)
T KOG3209|consen 835 IPPEEAGPPTSMTSAEKQSPFTQNGPYEQQYGLPGPRPSVYEEHPQPDTFQGLSINDRMSQNGDLYTVELERGAKG-FGF 913 (984)
T ss_pred cChhccCCCCCCcchhhcCcccccCCHhHccCCCCCCccccccCCCCccccceeccccccccCCeeEEEeeccccc-cce
Confidence 6210 0135566666665 999
Q ss_pred eeccCc-------EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEEEEeC
Q psy9257 447 HFNKGQ-------IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPT 507 (530)
Q Consensus 447 s~~~Gv-------V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLtVip~ 507 (530)
++++|. |..+..+++|.++| +++||+|++|||+...+|++....++|+..|..+.|.+.+.
T Consensus 914 SiRGGreynM~LfVLRlAeDGPA~rdGrm~VGDqi~eINGesTkgmtH~rAIelIk~gg~~vll~Lr~g 982 (984)
T KOG3209|consen 914 SIRGGREYNMDLFVLRLAEDGPAIRDGRMRVGDQITEINGESTKGMTHDRAIELIKQGGRRVLLLLRRG 982 (984)
T ss_pred EeecccccccceEEEEeccCCCccccCceeecceEEEecCcccCCCcHHHHHHHHHhCCeEEEEEeccC
Confidence 999885 88999999999999 99999999999999999999999999999988888877653
No 7
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=99.58 E-value=2.5e-14 Score=153.34 Aligned_cols=136 Identities=13% Similarity=0.196 Sum_probs=105.5
Q ss_pred EEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEecCCceeeEEeccC-----------
Q psy9257 371 VFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRD----------- 439 (530)
Q Consensus 371 V~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR~~~e~tVtL~kd----------- 439 (530)
.+|..|.++|||++||||.||+|++|||+.+.++++ ....+.....++++.++|.|+++++++++.-.
T Consensus 128 ~lV~~V~~~SpA~kAGLk~GDvI~~vnG~~V~~~~~-l~~~v~~~~~g~~v~v~v~R~gk~~~~~v~l~~~~~~~~~~~~ 206 (449)
T PRK10779 128 PVVGEIAPNSIAAQAQIAPGTELKAVDGIETPDWDA-VRLALVSKIGDESTTITVAPFGSDQRRDKTLDLRHWAFEPDKQ 206 (449)
T ss_pred ccccccCCCCHHHHcCCCCCCEEEEECCEEcCCHHH-HHHHHHhhccCCceEEEEEeCCccceEEEEecccccccCcccc
Confidence 478999999999999999999999999999999866 34445555667889999999887655443221
Q ss_pred -CCCccceeecc----CcEEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHh-CCCEEEEEEEeCcc
Q psy9257 440 -SSGHFGFHFNK----GQIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEK-GGSVLTLTLIPTSM 509 (530)
Q Consensus 440 -~~g~LGfs~~~----GvV~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkr-sG~tVtLtVip~~~ 509 (530)
....+|+.... -.|..|.++|+|+++||+.||+|++|||++|.++ +++...+++ .++.+.+++.|+..
T Consensus 207 ~~~~~lGl~~~~~~~~~vV~~V~~~SpA~~AGL~~GDvIl~Ing~~V~s~--~dl~~~l~~~~~~~v~l~v~R~g~ 280 (449)
T PRK10779 207 DPVSSLGIRPRGPQIEPVLAEVQPNSAASKAGLQAGDRIVKVDGQPLTQW--QTFVTLVRDNPGKPLALEIERQGS 280 (449)
T ss_pred chhhcccccccCCCcCcEEEeeCCCCHHHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHhCCCCEEEEEEEECCE
Confidence 11235654332 2488999999999999999999999999999988 467777764 56678888877653
No 8
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=99.46 E-value=4.8e-13 Score=142.51 Aligned_cols=130 Identities=20% Similarity=0.306 Sum_probs=100.5
Q ss_pred CcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEecCCceeeEEeccCCCCccceee
Q psy9257 369 EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSSGHFGFHF 448 (530)
Q Consensus 369 ~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR~~~e~tVtL~kd~~g~LGfs~ 448 (530)
.|.+|..|.++|+|++|||+.||+|++|||+.+.++.+ +.+.+.... ..+.+++.|+++..++.+. +|+..
T Consensus 128 ~g~~V~~V~~~SpA~~AGL~~GDvI~~vng~~v~~~~d--l~~~ia~~~-~~v~~~I~r~g~~~~l~v~------l~~~~ 198 (420)
T TIGR00054 128 VGPVIELLDKNSIALEAGIEPGDEILSVNGNKIPGFKD--VRQQIADIA-GEPMVEILAERENWTFEVM------KELIP 198 (420)
T ss_pred CCceeeccCCCCHHHHcCCCCCCEEEEECCEEcCCHHH--HHHHHHhhc-ccceEEEEEecCceEeccc------cccee
Confidence 67899999999999999999999999999999999866 444444444 6788888886665554332 22211
Q ss_pred c----cCcEEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHh-CCCEEEEEEEeCcc
Q psy9257 449 N----KGQIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEK-GGSVLTLTLIPTSM 509 (530)
Q Consensus 449 ~----~GvV~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkr-sG~tVtLtVip~~~ 509 (530)
. +-.|.+|.++++|+++||+.||+|++|||++|.++ +++...++. .++.+.+++.|+..
T Consensus 199 ~~~~~g~vV~~V~~~SpA~~aGL~~GD~Iv~Vng~~V~s~--~dl~~~l~~~~~~~v~l~v~R~g~ 262 (420)
T TIGR00054 199 RGPKIEPVLSDVTPNSPAEKAGLKEGDYIQSINGEKLRSW--TDFVSAVKENPGKSMDIKVERNGE 262 (420)
T ss_pred cCCCcCcEEEEECCCCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHhCCCCceEEEEEECCE
Confidence 1 12488999999999999999999999999999988 567777764 55667777777653
No 9
>PRK10898 serine endoprotease; Provisional
Probab=99.41 E-value=2.6e-13 Score=141.63 Aligned_cols=136 Identities=18% Similarity=0.166 Sum_probs=108.7
Q ss_pred hhcccccccccccccccCCCCCCCCceeecCCC---CccceechhcccccceEEE-----eccCCCeeEEEEEec-----
Q psy9257 301 ENAANERESDAAGNTVARQAPRDSCTMIAPLSS---SGSGLKKAYVTNGIRELVL-----CKDASGLIGLRVCAI----- 367 (530)
Q Consensus 301 ~~~ai~p~~~~~~av~~~~~~~~s~gilapvSG---~svGIgfAi~~~~Vr~V~L-----~K~s~G~LG~~V~~~----- 367 (530)
+|+++++|++++++++..|+..+++.+...-++ ...|++||++.+.++.+.. ++..++|||+.+...
T Consensus 191 tda~i~~GnSGGPl~n~~G~vvGI~~~~~~~~~~~~~~~g~~faIP~~~~~~~~~~l~~~G~~~~~~lGi~~~~~~~~~~ 270 (353)
T PRK10898 191 TDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPTQLATKIMDKLIRDGRVIRGYIGIGGREIAPLHA 270 (353)
T ss_pred eccccCCCCCcceEECCCCeEEEEEEEEecccCCCCcccceEEEEchHHHHHHHHHHhhcCcccccccceEEEECCHHHH
Confidence 899999999999999999999999765443222 2378999998777665542 455678999988753
Q ss_pred -------CCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHH-hCCCCeEEEEEecCCceeeEEecc
Q psy9257 368 -------NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILK-AAPVNNIRVVIRDRPLERTVTLHR 438 (530)
Q Consensus 368 -------~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk-~a~G~~VtLtVrR~~~e~tVtL~k 438 (530)
..|++|..|.++++|+++||+.||+|++|||+.+.++.+ +.+.+. ...++.+.|+|+|+++.+++.+..
T Consensus 271 ~~~~~~~~~Gv~V~~V~~~spA~~aGL~~GDvI~~Ing~~V~s~~~--l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l 347 (353)
T PRK10898 271 QGGGIDQLQGIVVNEVSPDGPAAKAGIQVNDLIISVNNKPAISALE--TMDQVAEIRPGSVIPVVVMRDDKQLTLQVTI 347 (353)
T ss_pred HhcCCCCCCeEEEEEECCCChHHHcCCCCCCEEEEECCEEcCCHHH--HHHHHHhcCCCCEEEEEEEECCEEEEEEEEe
Confidence 269999999999999999999999999999999988755 444443 367789999999988877766543
No 10
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=99.36 E-value=6.7e-13 Score=138.33 Aligned_cols=136 Identities=18% Similarity=0.204 Sum_probs=109.6
Q ss_pred hhcccccccccccccccCCCCCCCCceeecCC--CCccceechhcccccceEEE-----eccCCCeeEEEEEecC-----
Q psy9257 301 ENAANERESDAAGNTVARQAPRDSCTMIAPLS--SSGSGLKKAYVTNGIRELVL-----CKDASGLIGLRVCAIN----- 368 (530)
Q Consensus 301 ~~~ai~p~~~~~~av~~~~~~~~s~gilapvS--G~svGIgfAi~~~~Vr~V~L-----~K~s~G~LG~~V~~~~----- 368 (530)
+|++++++|+++++++..|+..+++.+...-+ +...|++|+++.+.++.+.. ++..++|||+.+...+
T Consensus 191 tda~i~~GnSGGpl~n~~G~vIGI~~~~~~~~~~~~~~g~~faIP~~~~~~vl~~l~~~g~~~r~~lGv~~~~~~~~~~~ 270 (351)
T TIGR02038 191 TDAAINAGNSGGALINTNGELVGINTASFQKGGDEGGEGINFAIPIKLAHKIMGKIIRDGRVIRGYIGVSGEDINSVVAQ 270 (351)
T ss_pred ECCccCCCCCcceEECCCCeEEEEEeeeecccCCCCccceEEEecHHHHHHHHHHHhhcCcccceEeeeEEEECCHHHHH
Confidence 89999999999999999999999976543322 23479999998777776542 3456789999987532
Q ss_pred -------CcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHh-CCCCeEEEEEecCCceeeEEecc
Q psy9257 369 -------EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKA-APVNNIRVVIRDRPLERTVTLHR 438 (530)
Q Consensus 369 -------~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~-a~G~~VtLtVrR~~~e~tVtL~k 438 (530)
.|++|..|.++++|+++||+.||+|++|||+.+.++.+ +.+.++. ..++.+.|+|.|+++.+++++..
T Consensus 271 ~lgl~~~~Gv~V~~V~~~spA~~aGL~~GDvI~~Ing~~V~s~~d--l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l 346 (351)
T TIGR02038 271 GLGLPDLRGIVITGVDPNGPAARAGILVRDVILKYDGKDVIGAEE--LMDRIAETRPGSKVMVTVLRQGKQLELPVTI 346 (351)
T ss_pred hcCCCccccceEeecCCCChHHHCCCCCCCEEEEECCEEcCCHHH--HHHHHHhcCCCCEEEEEEEECCEEEEEEEEe
Confidence 58999999999999999999999999999999998765 5555544 56789999999988877776643
No 11
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=99.31 E-value=9.9e-12 Score=103.09 Aligned_cols=78 Identities=36% Similarity=0.512 Sum_probs=65.2
Q ss_pred CeeEEEEEecCC--cEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHH-HhCCCCeEEEEEecCCceeeE
Q psy9257 358 GLIGLRVCAINE--GVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKIL-KAAPVNNIRVVIRDRPLERTV 434 (530)
Q Consensus 358 G~LG~~V~~~~~--GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LL-k~a~G~~VtLtVrR~~~e~tV 434 (530)
++||+.+..... |++|..|.++|||+++||+.||+|++|||..+.++.+ +...+ +...++.|.|+|.|+++.+++
T Consensus 1 ~~lGv~~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~--~~~~l~~~~~g~~v~l~v~R~g~~~~~ 78 (82)
T PF13180_consen 1 GGLGVTVQNLSDTGGVVVVSVIPGSPAAKAGLQPGDIILAINGKPVNSSED--LVNILSKGKPGDTVTLTVLRDGEELTV 78 (82)
T ss_dssp -E-SEEEEECSCSSSEEEEEESTTSHHHHTTS-TTEEEEEETTEESSSHHH--HHHHHHCSSTTSEEEEEEEETTEEEEE
T ss_pred CEECeEEEEccCCCeEEEEEeCCCCcHHHCCCCCCcEEEEECCEEcCCHHH--HHHHHHhCCCCCEEEEEEEECCEEEEE
Confidence 579999998765 9999999999999999999999999999999988655 44444 667789999999999998887
Q ss_pred Eec
Q psy9257 435 TLH 437 (530)
Q Consensus 435 tL~ 437 (530)
+++
T Consensus 79 ~v~ 81 (82)
T PF13180_consen 79 EVT 81 (82)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
No 12
>KOG3580|consensus
Probab=99.27 E-value=4e-11 Score=130.33 Aligned_cols=160 Identities=19% Similarity=0.267 Sum_probs=124.0
Q ss_pred ceEEEeccCCCeeEEEEEecC---------CcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCC
Q psy9257 348 RELVLCKDASGLIGLRVCAIN---------EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPV 418 (530)
Q Consensus 348 r~V~L~K~s~G~LG~~V~~~~---------~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G 418 (530)
..+.|.|+.+.+|||.+.++. ..++|+.|.+|+||+- -|+.||+|+.|||..+.+..+..+.+.|+++ +
T Consensus 10 hTvTL~kdp~rGFGIAiSGGRDnPhf~~getSiViSDVlpGGPAeG-~LQenDrvvMVNGvsMenv~haFAvQqLrks-g 87 (1027)
T KOG3580|consen 10 HTVTLQKDPKRGFGIAISGGRDNPHFENGETSIVISDVLPGGPAEG-LLQENDRVVMVNGVSMENVLHAFAVQQLRKS-G 87 (1027)
T ss_pred heeeeecCCCCcceeEeecCCCCCCccCCceeEEEeeccCCCCccc-ccccCCeEEEEcCcchhhhHHHHHHHHHHhh-c
Confidence 467888988888999998742 3589999999999983 2999999999999999999999999999875 5
Q ss_pred CeEEEEEecCCce-------------------------------------------------------------------
Q psy9257 419 NNIRVVIRDRPLE------------------------------------------------------------------- 431 (530)
Q Consensus 419 ~~VtLtVrR~~~e------------------------------------------------------------------- 431 (530)
+...++|+|..+.
T Consensus 88 K~A~ItvkRprkvqvpa~~asPp~s~~~r~~~ded~~d~Rs~rsg~~~r~~~~s~~grsrsw~~~~er~rP~~R~rsrer 167 (1027)
T KOG3580|consen 88 KVAAITVKRPRKVQVPALQASPPLSQDDRAFEDEDEFDGRSFRSGYSERSRLNSHGGRSRSWEDSPERGRPHERARSRER 167 (1027)
T ss_pred cceeEEecccceeeccccCCCCCCCCccccccchhccCcccccccccccccccccCCcccccccccccCCcccccccccc
Confidence 6677777642100
Q ss_pred --------------------------------eeEEecc-CCCCccceeeccCc-EEEEccCCHHHHcC-CCCCCEEEEE
Q psy9257 432 --------------------------------RTVTLHR-DSSGHFGFHFNKGQ-IVSLVKDSSAARNG-LLVNHNILEV 476 (530)
Q Consensus 432 --------------------------------~tVtL~k-d~~g~LGfs~~~Gv-V~sVv~gSpAarAG-Lr~GDrILeV 476 (530)
..+.|.| ....++|+.+..-+ |+.|...+.|++.| |+.||+||+|
T Consensus 168 ~ls~~~~gprs~~r~~~ss~~~~p~p~~~~~p~kv~LvKsR~nEEyGlrLgSqIFvKeit~~gLAardgnlqEGDiiLkI 247 (1027)
T KOG3580|consen 168 DLSRDRRGPRSRSREHPSSRSPSPEPRGRPGPIKVLLVKSRANEEYGLRLGSQIFVKEITRTGLAARDGNLQEGDIILKI 247 (1027)
T ss_pred ccccCCCCCcccccccccCCCCCCCccCCCCcceEEEEeeccchhhcccccchhhhhhhcccchhhccCCcccccEEEEE
Confidence 0111111 11223444442222 88899999999987 9999999999
Q ss_pred cCeecCCCChHHHHHHHHhCCCEEEEEEEeCcc
Q psy9257 477 NGANVVGLKDKELLEAMEKGGSVLTLTLIPTSM 509 (530)
Q Consensus 477 NGq~V~gls~eeVv~iLkrsG~tVtLtVip~~~ 509 (530)
||....+|+-.+...+|+++.+.+.|+|.+...
T Consensus 248 NGtvteNmSLtDar~LIEkS~GKL~lvVlRD~~ 280 (1027)
T KOG3580|consen 248 NGTVTENMSLTDARKLIEKSRGKLQLVVLRDSQ 280 (1027)
T ss_pred CcEeeccccchhHHHHHHhccCceEEEEEecCC
Confidence 999999999889999999999999999988753
No 13
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=99.24 E-value=6.1e-11 Score=97.66 Aligned_cols=77 Identities=36% Similarity=0.627 Sum_probs=67.6
Q ss_pred eEEEeccCCCeeEEEEEecC----CcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEE
Q psy9257 349 ELVLCKDASGLIGLRVCAIN----EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVV 424 (530)
Q Consensus 349 ~V~L~K~s~G~LG~~V~~~~----~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLt 424 (530)
+|.+.|...+.|||++.... .+++|..|.++|+|+++||+.||+|++|||+.+.+++++++..+++.+.+ .|+|+
T Consensus 1 ~v~l~k~~~~~lG~~l~~~~~~~~~~~~V~~v~~~~~a~~~gl~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~-~v~L~ 79 (81)
T PF00595_consen 1 QVTLEKSGNGPLGFTLRGGSDNDEKGVFVSSVVPGSPAERAGLKVGDRILEINGQSVRGMSHDEVVQLLKSASN-PVTLT 79 (81)
T ss_dssp EEEEEESTTSBSSEEEEEESTSSSEEEEEEEECTTSHHHHHTSSTTEEEEEETTEESTTSBHHHHHHHHHHSTS-EEEEE
T ss_pred CEEEEeCCCCCcCEEEEecCCCCcCCEEEEEEeCCChHHhcccchhhhhheeCCEeCCCCCHHHHHHHHHCCCC-cEEEE
Confidence 35666667888999999855 38999999999999999999999999999999999999999999988754 78887
Q ss_pred Ee
Q psy9257 425 IR 426 (530)
Q Consensus 425 Vr 426 (530)
|+
T Consensus 80 V~ 81 (81)
T PF00595_consen 80 VQ 81 (81)
T ss_dssp EE
T ss_pred EC
Confidence 64
No 14
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=3.5e-11 Score=124.38 Aligned_cols=144 Identities=22% Similarity=0.232 Sum_probs=118.9
Q ss_pred chHHHHHHHHhhcccccccccccccccCCCCCCCCceeecCCCCccceechhcccccceEEE-----eccCCCeeEEEEE
Q psy9257 291 ASELINAYARENAANERESDAAGNTVARQAPRDSCTMIAPLSSSGSGLKKAYVTNGIRELVL-----CKDASGLIGLRVC 365 (530)
Q Consensus 291 ~ed~Iqa~~~~~~ai~p~~~~~~av~~~~~~~~s~gilapvSG~svGIgfAi~~~~Vr~V~L-----~K~s~G~LG~~V~ 365 (530)
.++.|| +|+++++++++++.++..++..+++..+...+++..||+|+++...++.+.. ++..++++|+.+.
T Consensus 181 ~~~~Iq----tdAain~gnsGgpl~n~~g~~iGint~~~~~~~~~~gigfaiP~~~~~~v~~~l~~~G~v~~~~lgv~~~ 256 (347)
T COG0265 181 YVNFIQ----TDAAINPGNSGGPLVNIDGEVVGINTAIIAPSGGSSGIGFAIPVNLVAPVLDELISKGKVVRGYLGVIGE 256 (347)
T ss_pred ccchhh----cccccCCCCCCCceEcCCCcEEEEEEEEecCCCCcceeEEEecHHHHHHHHHHHHHcCCccccccceEEE
Confidence 667888 9999999999999999999999998887777888899999997776665443 3566888898866
Q ss_pred ec----------CCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEecCCceeeEE
Q psy9257 366 AI----------NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVT 435 (530)
Q Consensus 366 ~~----------~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR~~~e~tVt 435 (530)
.. ..|++|..|.++++|+++|++.||.|+++||+.+.+..+ ....+.....+..+.+.+.|+++++++.
T Consensus 257 ~~~~~~~~g~~~~~G~~V~~v~~~spa~~agi~~Gdii~~vng~~v~~~~~-l~~~v~~~~~g~~v~~~~~r~g~~~~~~ 335 (347)
T COG0265 257 PLTADIALGLPVAAGAVVLGVLPGSPAAKAGIKAGDIITAVNGKPVASLSD-LVAAVASNRPGDEVALKLLRGGKERELA 335 (347)
T ss_pred EcccccccCCCCCCceEEEecCCCChHHHcCCCCCCEEEEECCEEccCHHH-HHHHHhccCCCCEEEEEEEECCEEEEEE
Confidence 42 358999999999999999999999999999999998655 4455555556889999999998887776
Q ss_pred eccC
Q psy9257 436 LHRD 439 (530)
Q Consensus 436 L~kd 439 (530)
+...
T Consensus 336 v~l~ 339 (347)
T COG0265 336 VTLG 339 (347)
T ss_pred EEec
Confidence 6543
No 15
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=99.18 E-value=3e-10 Score=93.53 Aligned_cols=81 Identities=35% Similarity=0.563 Sum_probs=70.3
Q ss_pred CeeEEEEEecCCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEecC-CceeeEEe
Q psy9257 358 GLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDR-PLERTVTL 436 (530)
Q Consensus 358 G~LG~~V~~~~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR~-~~e~tVtL 436 (530)
++||+.+.....+++|..|.++++|+++||+.||+|++|||..+.++...++..+++...+..+.|++.|+ ++.+++++
T Consensus 2 ~~lG~~~~~~~~~~~V~~v~~~s~a~~~gl~~GD~I~~vng~~i~~~~~~~~~~~l~~~~~~~i~l~v~r~~~~~~~~~~ 81 (85)
T cd00988 2 GGIGLELKYDDGGLVITSVLPGSPAAKAGIKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGTKVRLTLKRGDGEPREVTL 81 (85)
T ss_pred eEEEEEEEEcCCeEEEEEecCCCCHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCEEEEEEEcCCCCEEEEEE
Confidence 56999998777899999999999999999999999999999999999666677888766678899999988 77777766
Q ss_pred cc
Q psy9257 437 HR 438 (530)
Q Consensus 437 ~k 438 (530)
.+
T Consensus 82 ~~ 83 (85)
T cd00988 82 TR 83 (85)
T ss_pred EE
Confidence 53
No 16
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=99.09 E-value=7.6e-10 Score=87.93 Aligned_cols=68 Identities=35% Similarity=0.560 Sum_probs=61.2
Q ss_pred eeEEEEEecCC-cEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEe
Q psy9257 359 LIGLRVCAINE-GVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIR 426 (530)
Q Consensus 359 ~LG~~V~~~~~-GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVr 426 (530)
+|||.+..... +++|..|.++++|+++||+.||+|++|||+.+.+++.+++.++++...+..++|+|+
T Consensus 2 ~~G~~~~~~~~~~~~V~~v~~~s~a~~~gl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~ 70 (70)
T cd00136 2 GLGFSIRGGTEGGVVVLSVEPGSPAERAGLQAGDVILAVNGTDVKNLTLEDVAELLKKEVGEKVTLTVR 70 (70)
T ss_pred CccEEEecCCCCCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhhCCCCeEEEEEC
Confidence 58999987665 999999999999999999999999999999999998888999998877788888763
No 17
>KOG3580|consensus
Probab=99.04 E-value=1.1e-09 Score=119.23 Aligned_cols=149 Identities=23% Similarity=0.356 Sum_probs=113.2
Q ss_pred ccCCCeeEEEEEecCCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEecCCcee
Q psy9257 354 KDASGLIGLRVCAINEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLER 432 (530)
Q Consensus 354 K~s~G~LG~~V~~~~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR~~~e~ 432 (530)
......+|+++. .-|||..+...+-|++.| |+.||+||+|||....+++...+.+++.+..| ++.|+|.|+....
T Consensus 207 sR~nEEyGlrLg---SqIFvKeit~~gLAardgnlqEGDiiLkINGtvteNmSLtDar~LIEkS~G-KL~lvVlRD~~qt 282 (1027)
T KOG3580|consen 207 SRANEEYGLRLG---SQIFVKEITRTGLAARDGNLQEGDIILKINGTVTENMSLTDARKLIEKSRG-KLQLVVLRDSQQT 282 (1027)
T ss_pred eccchhhccccc---chhhhhhhcccchhhccCCcccccEEEEECcEeeccccchhHHHHHHhccC-ceEEEEEecCCce
Confidence 344556888875 469999999999888877 99999999999999999999889999977655 4666665421100
Q ss_pred eE------------------------------------------------------------------------------
Q psy9257 433 TV------------------------------------------------------------------------------ 434 (530)
Q Consensus 433 tV------------------------------------------------------------------------------ 434 (530)
-|
T Consensus 283 LiNiP~l~d~dSe~~disEi~tms~rs~spp~rrs~~~s~d~~s~s~h~p~~Ps~r~~~~~R~s~~gat~tPvks~~d~~ 362 (1027)
T KOG3580|consen 283 LINIPSLNDSDSEIEDISEIETMSDRSFSPPERRSQYSSYDYHSSSEHLPERPSSREDTPSRLSRMGATPTPVKSTGDIA 362 (1027)
T ss_pred eeecCCCccccccccchhhhhccccccCCCchhhhhccCccccCchhcCCCCCCccccchhhcccCCCCCCCccCccccC
Confidence 00
Q ss_pred -------Eec---------------------------------------c-CCCCccceeeccCc-----EEEEccCCHH
Q psy9257 435 -------TLH---------------------------------------R-DSSGHFGFHFNKGQ-----IVSLVKDSSA 462 (530)
Q Consensus 435 -------tL~---------------------------------------k-d~~g~LGfs~~~Gv-----V~sVv~gSpA 462 (530)
++. + .....+|+.+.+|. |..|..|++|
T Consensus 363 ~~~V~e~t~e~~~~q~p~lP~pk~~~~~~~~pS~~~m~~ygysP~tk~VrF~KGdSvGLRLAGGNDVGIFVaGvqegspA 442 (1027)
T KOG3580|consen 363 GTVVPETTKEPRYQQEPPLPQPKAAPRTFLRPSPEDMAIYGYSPNTKMVRFKKGDSVGLRLAGGNDVGIFVAGVQEGSPA 442 (1027)
T ss_pred CccccccccCcccccCCCCCCcccCcceeeecCHHHHHHhcCCCCceeEEeecCCeeeeEeccCCceeEEEeecccCCch
Confidence 000 0 01123677777664 7889999999
Q ss_pred HHcCCCCCCEEEEEcCeecCCCChHHHHHHHH--hCCCEEEEEEEe
Q psy9257 463 ARNGLLVNHNILEVNGANVVGLKDKELLEAME--KGGSVLTLTLIP 506 (530)
Q Consensus 463 arAGLr~GDrILeVNGq~V~gls~eeVv~iLk--rsG~tVtLtVip 506 (530)
++.||+.||+||.||.++..++..++.+..|. -.|+.++|+..+
T Consensus 443 ~~eGlqEGDQIL~VN~vdF~nl~REeAVlfLL~lPkGEevtilaQ~ 488 (1027)
T KOG3580|consen 443 EQEGLQEGDQILKVNTVDFRNLVREEAVLFLLELPKGEEVTILAQS 488 (1027)
T ss_pred hhccccccceeEEeccccchhhhHHHHHHHHhcCCCCcEEeehhhh
Confidence 99999999999999999999999888877765 567788877644
No 18
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=99.03 E-value=1.8e-09 Score=87.56 Aligned_cols=77 Identities=25% Similarity=0.388 Sum_probs=64.9
Q ss_pred eeEEEEEecCCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEecCCceeeEEec
Q psy9257 359 LIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLH 437 (530)
Q Consensus 359 ~LG~~V~~~~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR~~~e~tVtL~ 437 (530)
||||........++|..|.++++|+++||+.||+|++|||+.+.++.+ +..++....+..+.+++.|+++.+++.+.
T Consensus 2 ~~~~~~g~~~~~~~V~~v~~~s~a~~~gl~~GD~I~~ing~~i~~~~~--~~~~l~~~~~~~~~l~v~r~~~~~~~~l~ 78 (79)
T cd00989 2 ILGFVPGGPPIEPVIGEVVPGSPAAKAGLKAGDRILAINGQKIKSWED--LVDAVQENPGKPLTLTVERNGETITLTLT 78 (79)
T ss_pred eeeEeccCCccCcEEEeECCCCHHHHcCCCCCCEEEEECCEECCCHHH--HHHHHHHCCCceEEEEEEECCEEEEEEec
Confidence 688888766677999999999999999999999999999999998754 66777666577899999988777766653
No 19
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=99.02 E-value=1.8e-09 Score=89.00 Aligned_cols=73 Identities=36% Similarity=0.610 Sum_probs=64.4
Q ss_pred eEEeccCCCCccceeecc-------Cc-EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEEE
Q psy9257 433 TVTLHRDSSGHFGFHFNK-------GQ-IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTL 504 (530)
Q Consensus 433 tVtL~kd~~g~LGfs~~~-------Gv-V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLtV 504 (530)
+|+|.++..+.|||.+.. +. |.+|.++++|+++||+.||+|++|||+++.+++++++..+++.+++.++|+|
T Consensus 1 ~v~l~k~~~~~lG~~l~~~~~~~~~~~~V~~v~~~~~a~~~gl~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v~L~V 80 (81)
T PF00595_consen 1 QVTLEKSGNGPLGFTLRGGSDNDEKGVFVSSVVPGSPAERAGLKVGDRILEINGQSVRGMSHDEVVQLLKSASNPVTLTV 80 (81)
T ss_dssp EEEEEESTTSBSSEEEEEESTSSSEEEEEEEECTTSHHHHHTSSTTEEEEEETTEESTTSBHHHHHHHHHHSTSEEEEEE
T ss_pred CEEEEeCCCCCcCEEEEecCCCCcCCEEEEEEeCCChHHhcccchhhhhheeCCEeCCCCCHHHHHHHHHCCCCcEEEEE
Confidence 356777677789999863 22 8999999999999999999999999999999999999999999988999987
Q ss_pred E
Q psy9257 505 I 505 (530)
Q Consensus 505 i 505 (530)
.
T Consensus 81 ~ 81 (81)
T PF00595_consen 81 Q 81 (81)
T ss_dssp E
T ss_pred C
Confidence 4
No 20
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=99.00 E-value=4.2e-09 Score=85.61 Aligned_cols=77 Identities=35% Similarity=0.596 Sum_probs=64.2
Q ss_pred ceEEEeccCCCeeEEEEEecC---CcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEE
Q psy9257 348 RELVLCKDASGLIGLRVCAIN---EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVV 424 (530)
Q Consensus 348 r~V~L~K~s~G~LG~~V~~~~---~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLt 424 (530)
+++.+.+...+.|||.+.... .|++|..|.++++|+++||+.||+|++|||..+.+++.+++..+++...+ .+.|+
T Consensus 2 ~~~~l~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~s~a~~~gl~~GD~I~~ing~~i~~~~~~~~~~~l~~~~~-~v~l~ 80 (82)
T cd00992 2 RTVTLRKDPGGGLGFSLRGGKDSGGGIFVSRVEPGGPAERGGLRVGDRILEVNGVSVEGLTHEEAVELLKNSGD-EVTLT 80 (82)
T ss_pred EEEEEEeCCCCCcCEEEeCcccCCCCeEEEEECCCChHHhCCCCCCCEEEEECCEEcCccCHHHHHHHHHhCCC-eEEEE
Confidence 355666665778999998764 58999999999999999999999999999999998888888999877543 56665
Q ss_pred E
Q psy9257 425 I 425 (530)
Q Consensus 425 V 425 (530)
+
T Consensus 81 v 81 (82)
T cd00992 81 V 81 (82)
T ss_pred E
Confidence 4
No 21
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=98.96 E-value=8.9e-09 Score=83.51 Aligned_cols=78 Identities=32% Similarity=0.475 Sum_probs=64.7
Q ss_pred eEEEeccCCCeeEEEEEecC---CcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEE
Q psy9257 349 ELVLCKDASGLIGLRVCAIN---EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVI 425 (530)
Q Consensus 349 ~V~L~K~s~G~LG~~V~~~~---~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtV 425 (530)
.+.+.+.. +.|||++.... .|++|..|.++++|+++||+.||+|++|||+.+.++.+.....+++.. +..+.|++
T Consensus 4 ~~~~~~~~-~~~G~~~~~~~~~~~~~~i~~v~~~s~a~~~gl~~GD~I~~In~~~v~~~~~~~~~~~~~~~-~~~~~l~i 81 (85)
T smart00228 4 LVELEKGG-GGLGFSLVGGKDEGGGVVVSSVVPGSPAAKAGLKVGDVILEVNGTSVEGLTHLEAVDLLKKA-GGKVTLTV 81 (85)
T ss_pred EEEEEECC-CcccEEEECCCCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEE
Confidence 34455555 78999998654 699999999999999999999999999999999999887777777664 45788888
Q ss_pred ecC
Q psy9257 426 RDR 428 (530)
Q Consensus 426 rR~ 428 (530)
.|+
T Consensus 82 ~r~ 84 (85)
T smart00228 82 LRG 84 (85)
T ss_pred EeC
Confidence 775
No 22
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.93 E-value=7.5e-09 Score=84.42 Aligned_cols=74 Identities=24% Similarity=0.267 Sum_probs=60.6
Q ss_pred eeEEEEEecCCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHh-CCCCeEEEEEecCCceeeEEec
Q psy9257 359 LIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKA-APVNNIRVVIRDRPLERTVTLH 437 (530)
Q Consensus 359 ~LG~~V~~~~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~-a~G~~VtLtVrR~~~e~tVtL~ 437 (530)
++|+.+...+.|++|..|.++|+|+++||+.||+|++|||+.+.+|.+ +++. ..++.+.+++.|+++.+++.+.
T Consensus 2 ~~G~~~~~~~~~~~V~~V~~~s~a~~aGl~~GD~I~~Ing~~v~~~~~-----~l~~~~~~~~v~l~v~r~g~~~~~~v~ 76 (80)
T cd00990 2 YLGLTLDKEEGLGKVTFVRDDSPADKAGLVAGDELVAVNGWRVDALQD-----RLKEYQAGDPVELTVFRDDRLIEVPLT 76 (80)
T ss_pred cccEEEEccCCcEEEEEECCCChHHHhCCCCCCEEEEECCEEhHHHHH-----HHHhcCCCCEEEEEEEECCEEEEEEEE
Confidence 688988876778999999999999999999999999999999987432 3333 3567899999998877766554
No 23
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.86 E-value=1.3e-08 Score=84.34 Aligned_cols=68 Identities=31% Similarity=0.318 Sum_probs=58.1
Q ss_pred CCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhC-CCCeEEEEEecCCceeeEEec
Q psy9257 368 NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAA-PVNNIRVVIRDRPLERTVTLH 437 (530)
Q Consensus 368 ~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a-~G~~VtLtVrR~~~e~tVtL~ 437 (530)
..|++|..|.++|+|+++||+.||+|++|||+.+.+|.+ +..++... .+..+.|++.|+++.+++++.
T Consensus 9 ~~Gv~V~~V~~~spa~~aGL~~GDiI~~Ing~~v~~~~d--~~~~l~~~~~g~~v~l~v~r~g~~~~~~~~ 77 (79)
T cd00991 9 VAGVVIVGVIVGSPAENAVLHTGDVIYSINGTPITTLED--FMEALKPTKPGEVITVTVLPSTTKLTNVST 77 (79)
T ss_pred CCcEEEEEECCCChHHhcCCCCCCEEEEECCEEcCCHHH--HHHHHhcCCCCCEEEEEEEECCEEEEEEEE
Confidence 478999999999999999999999999999999998765 66666654 478899999998877776654
No 24
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.85 E-value=2e-08 Score=83.04 Aligned_cols=65 Identities=35% Similarity=0.538 Sum_probs=54.2
Q ss_pred CcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhC-CCCeEEEEEecCCceeeEE
Q psy9257 369 EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAA-PVNNIRVVIRDRPLERTVT 435 (530)
Q Consensus 369 ~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a-~G~~VtLtVrR~~~e~tVt 435 (530)
.|++|..|.++++|+++||+.||+|++|||+.+.++.+ +..++... .+..+.|.+.|+++.+.+.
T Consensus 24 ~g~~V~~v~~~s~a~~~gl~~GD~I~~Ing~~i~~~~~--~~~~l~~~~~~~~i~l~v~r~g~~~~~~ 89 (90)
T cd00987 24 KGVLVASVDPGSPAAKAGLKPGDVILAVNGKPVKSVAD--LRRALAELKPGDKVTLTVLRGGKELTVT 89 (90)
T ss_pred CEEEEEEECCCCHHHHcCCCcCCEEEEECCEECCCHHH--HHHHHHhcCCCCEEEEEEEECCEEEEee
Confidence 58999999999999999999999999999999998765 55555543 4688999998887665553
No 25
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=98.70 E-value=6.5e-08 Score=103.47 Aligned_cols=86 Identities=30% Similarity=0.456 Sum_probs=76.7
Q ss_pred eccCCCeeEEEEEecC-CcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEecC--C
Q psy9257 353 CKDASGLIGLRVCAIN-EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDR--P 429 (530)
Q Consensus 353 ~K~s~G~LG~~V~~~~-~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR~--~ 429 (530)
++.+.+++|+++...+ .++.|..+.+++||+++||+.||+|+.|||+.+.+...+++...++...|..|+|++.|. .
T Consensus 95 ~~~~~~GiG~~i~~~~~~~~~V~s~~~~~PA~kagi~~GD~I~~IdG~~~~~~~~~~av~~irG~~Gt~V~L~i~r~~~~ 174 (406)
T COG0793 95 TSGEFGGIGIELQMEDIGGVKVVSPIDGSPAAKAGIKPGDVIIKIDGKSVGGVSLDEAVKLIRGKPGTKVTLTILRAGGG 174 (406)
T ss_pred ccccccceeEEEEEecCCCcEEEecCCCChHHHcCCCCCCEEEEECCEEccCCCHHHHHHHhCCCCCCeEEEEEEEcCCC
Confidence 5568889999999877 899999999999999999999999999999999999988899999999999999999995 4
Q ss_pred ceeeEEecc
Q psy9257 430 LERTVTLHR 438 (530)
Q Consensus 430 ~e~tVtL~k 438 (530)
+.+++++.+
T Consensus 175 k~~~v~l~R 183 (406)
T COG0793 175 KPFTVTLTR 183 (406)
T ss_pred ceeEEEEEE
Confidence 556666654
No 26
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=98.69 E-value=1.1e-07 Score=100.85 Aligned_cols=84 Identities=31% Similarity=0.478 Sum_probs=70.0
Q ss_pred cCCCeeEEEEEecC------CcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEecC
Q psy9257 355 DASGLIGLRVCAIN------EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDR 428 (530)
Q Consensus 355 ~s~G~LG~~V~~~~------~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR~ 428 (530)
....++|+.+.... .|++|..|.++|||+++||+.||+|++|||+.|.++....+..+++...+..|.|+|.|.
T Consensus 82 ~~~~GiG~~~~~~~~~~~~~~g~~V~~V~~~SPA~~aGl~~GD~Iv~InG~~v~~~~~~~~~~~l~g~~g~~v~ltv~r~ 161 (389)
T PLN00049 82 GAVTGVGLEVGYPTGSDGPPAGLVVVAPAPGGPAARAGIRPGDVILAIDGTSTEGLSLYEAADRLQGPEGSSVELTLRRG 161 (389)
T ss_pred CCceEEEEEEEEccCCCCccCcEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEEC
Confidence 44556888876422 289999999999999999999999999999999998776777888777788999999998
Q ss_pred CceeeEEecc
Q psy9257 429 PLERTVTLHR 438 (530)
Q Consensus 429 ~~e~tVtL~k 438 (530)
++.++++|.+
T Consensus 162 g~~~~~~l~r 171 (389)
T PLN00049 162 PETRLVTLTR 171 (389)
T ss_pred CEEEEEEEEe
Confidence 8777777654
No 27
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=98.69 E-value=9.8e-08 Score=102.59 Aligned_cols=139 Identities=17% Similarity=0.193 Sum_probs=101.1
Q ss_pred EEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEe-cCCceeeEEeccCCCCccceeeccC
Q psy9257 373 VCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIR-DRPLERTVTLHRDSSGHFGFHFNKG 451 (530)
Q Consensus 373 Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVr-R~~~e~tVtL~kd~~g~LGfs~~~G 451 (530)
|..|.+||+|+++||+.||+|++|||+.+.+|.+ +...+. +..+.++|. |+++.+++.+.++....||+.|..+
T Consensus 2 I~~V~pgSpAe~AGLe~GD~IlsING~~V~Dw~D--~~~~l~---~e~l~L~V~~rdGe~~~l~Ie~~~dedlG~~f~~~ 76 (433)
T TIGR03279 2 ISAVLPGSIAEELGFEPGDALVSINGVAPRDLID--YQFLCA---DEELELEVLDANGESHQIEIEKDLDEDLGLEFTTA 76 (433)
T ss_pred cCCcCCCCHHHHcCCCCCCEEEEECCEECCCHHH--HHHHhc---CCcEEEEEEcCCCeEEEEEEecCCCCCCcEEeccc
Confidence 6789999999999999999999999999999876 444442 466888886 7788899999999888899998643
Q ss_pred c------------EEEEccCCHHHHcC--CCCCCEEE---EEcCeecCCCChHHHHHHHHhCCCEEEEEEEe--Ccchhh
Q psy9257 452 Q------------IVSLVKDSSAARNG--LLVNHNIL---EVNGANVVGLKDKELLEAMEKGGSVLTLTLIP--TSMYQH 512 (530)
Q Consensus 452 v------------V~sVv~gSpAarAG--Lr~GDrIL---eVNGq~V~gls~eeVv~iLkrsG~tVtLtVip--~~~~e~ 512 (530)
. --.|..--+..|.. +|..|.-+ .=|-..+++++.+++.++++..=..+.+.|.- ...+..
T Consensus 77 ~~d~~~~C~N~C~FCFidQlP~gmR~sLY~KDDDyRLSFL~GnyiTLTNl~~~d~~RI~~~~lspl~iSVhat~p~lR~~ 156 (433)
T TIGR03279 77 LFDGLIQCNNRCPFCFIDQQPPGKRESLYLKDDDYRLSFLYGSYLTLTNLPPAEWQRIEQLRLSPLYVSVHATEPSLRAR 156 (433)
T ss_pred cCCcccccCCcCceEeccCCCCCCcCcceeccCcchhhhhccceeeecCCCHHHHHHHHHcCCCCEEEEEecCCHHHHHH
Confidence 2 11233323334443 56666543 44778899999999999999655667776643 333444
Q ss_pred hhhc
Q psy9257 513 MMKK 516 (530)
Q Consensus 513 m~kk 516 (530)
|.++
T Consensus 157 ll~n 160 (433)
T TIGR03279 157 LLKN 160 (433)
T ss_pred HhCC
Confidence 4443
No 28
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=98.68 E-value=9.7e-08 Score=98.86 Aligned_cols=76 Identities=24% Similarity=0.388 Sum_probs=65.3
Q ss_pred CCCeeEEEEEecCCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEecCCce
Q psy9257 356 ASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLE 431 (530)
Q Consensus 356 s~G~LG~~V~~~~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR~~~e 431 (530)
...+||+++.....+++|..|.++|+|+++||+.||+|++|||+.+.+|+..++..+++...+..+.|+|.|+++.
T Consensus 49 ~~~~lG~~~~~~~~~~~V~~V~~~spA~~aGL~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~~ 124 (334)
T TIGR00225 49 SLEGIGIQVGMDDGEIVIVSPFEGSPAEKAGIKPGDKIIKINGKSVAGMSLDDAVALIRGKKGTKVSLEILRAGKS 124 (334)
T ss_pred ceEEEEEEEEEECCEEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHhccCCCCCEEEEEEEeCCCC
Confidence 3456899988777789999999999999999999999999999999998765677777666788999999987543
No 29
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.65 E-value=1.6e-07 Score=77.09 Aligned_cols=67 Identities=21% Similarity=0.375 Sum_probs=55.6
Q ss_pred CCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHh-CCCCeEEEEEecCCceeeEEec
Q psy9257 368 NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKA-APVNNIRVVIRDRPLERTVTLH 437 (530)
Q Consensus 368 ~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~-a~G~~VtLtVrR~~~e~tVtL~ 437 (530)
..|++|..|.++|+|+. ||+.||+|++|||..+.++.+ +..++.. ..+..+.|++.|+++.+++++.
T Consensus 7 ~~Gv~V~~V~~~s~A~~-gL~~GD~I~~Ing~~v~~~~~--~~~~l~~~~~~~~v~l~v~r~g~~~~~~v~ 74 (79)
T cd00986 7 YHGVYVTSVVEGMPAAG-KLKAGDHIIAVDGKPFKEAEE--LIDYIQSKKEGDTVKLKVKREEKELPEDLI 74 (79)
T ss_pred ecCEEEEEECCCCchhh-CCCCCCEEEEECCEECCCHHH--HHHHHHhCCCCCEEEEEEEECCEEEEEEEE
Confidence 46899999999999987 899999999999999998655 6666664 5578899999998877666553
No 30
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=98.62 E-value=3.7e-07 Score=74.17 Aligned_cols=72 Identities=40% Similarity=0.649 Sum_probs=60.2
Q ss_pred eEEeccCCCCccceeeccC------c-EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEEE
Q psy9257 433 TVTLHRDSSGHFGFHFNKG------Q-IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTL 504 (530)
Q Consensus 433 tVtL~kd~~g~LGfs~~~G------v-V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLtV 504 (530)
.+.+.+.....+||.+.++ . |..|..+++|+++||+.||+|++|||+++.++..+++...++.....++|++
T Consensus 3 ~~~l~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~s~a~~~gl~~GD~I~~ing~~i~~~~~~~~~~~l~~~~~~v~l~v 81 (82)
T cd00992 3 TVTLRKDPGGGLGFSLRGGKDSGGGIFVSRVEPGGPAERGGLRVGDRILEVNGVSVEGLTHEEAVELLKNSGDEVTLTV 81 (82)
T ss_pred EEEEEeCCCCCcCEEEeCcccCCCCeEEEEECCCChHHhCCCCCCCEEEEECCEEcCccCHHHHHHHHHhCCCeEEEEE
Confidence 4555565566788888743 2 8899999999999999999999999999998888999999998777777765
No 31
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=98.55 E-value=8.7e-07 Score=71.82 Aligned_cols=74 Identities=39% Similarity=0.599 Sum_probs=60.9
Q ss_pred eEEeccCCCCccceeecc------Cc-EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEEEE
Q psy9257 433 TVTLHRDSSGHFGFHFNK------GQ-IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLI 505 (530)
Q Consensus 433 tVtL~kd~~g~LGfs~~~------Gv-V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLtVi 505 (530)
.+.+.+.. ..+||.+.. |. |..|.++++|+++||+.||+|++|||+.+.++.+.++...++..++.+.|++.
T Consensus 4 ~~~~~~~~-~~~G~~~~~~~~~~~~~~i~~v~~~s~a~~~gl~~GD~I~~In~~~v~~~~~~~~~~~~~~~~~~~~l~i~ 82 (85)
T smart00228 4 LVELEKGG-GGLGFSLVGGKDEGGGVVVSSVVPGSPAAKAGLKVGDVILEVNGTSVEGLTHLEAVDLLKKAGGKVTLTVL 82 (85)
T ss_pred EEEEEECC-CcccEEEECCCCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEE
Confidence 34455555 668888764 33 88999999999999999999999999999999888888888877778888887
Q ss_pred eC
Q psy9257 506 PT 507 (530)
Q Consensus 506 p~ 507 (530)
+.
T Consensus 83 r~ 84 (85)
T smart00228 83 RG 84 (85)
T ss_pred eC
Confidence 64
No 32
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=98.46 E-value=1e-06 Score=69.88 Aligned_cols=61 Identities=36% Similarity=0.559 Sum_probs=52.2
Q ss_pred cceeecc----C-cEEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhC-CCEEEEEE
Q psy9257 444 FGFHFNK----G-QIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKG-GSVLTLTL 504 (530)
Q Consensus 444 LGfs~~~----G-vV~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrs-G~tVtLtV 504 (530)
+||.+.. + .|..|.++++|+++||+.||+|++|||+++.+++.+++..+++.. ++.++|++
T Consensus 3 ~G~~~~~~~~~~~~V~~v~~~s~a~~~gl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v 69 (70)
T cd00136 3 LGFSIRGGTEGGVVVLSVEPGSPAERAGLQAGDVILAVNGTDVKNLTLEDVAELLKKEVGEKVTLTV 69 (70)
T ss_pred ccEEEecCCCCCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhhCCCCeEEEEE
Confidence 6666653 2 288999999999999999999999999999999988999999864 47888876
No 33
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=98.46 E-value=5.2e-07 Score=74.83 Aligned_cols=58 Identities=31% Similarity=0.447 Sum_probs=49.4
Q ss_pred EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHH--hCCCEEEEEEEeCcchhh
Q psy9257 453 IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAME--KGGSVLTLTLIPTSMYQH 512 (530)
Q Consensus 453 V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLk--rsG~tVtLtVip~~~~e~ 512 (530)
|.+|.++++|+++||+.||+|++|||+.+.++ .++...+. +.|+.++|++.|......
T Consensus 18 V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~--~~~~~~l~~~~~g~~v~l~v~R~g~~~~ 77 (82)
T PF13180_consen 18 VVSVIPGSPAAKAGLQPGDIILAINGKPVNSS--EDLVNILSKGKPGDTVTLTVLRDGEELT 77 (82)
T ss_dssp EEEESTTSHHHHTTS-TTEEEEEETTEESSSH--HHHHHHHHCSSTTSEEEEEEEETTEEEE
T ss_pred EEEeCCCCcHHHCCCCCCcEEEEECCEEcCCH--HHHHHHHHhCCCCCEEEEEEEECCEEEE
Confidence 88999999999999999999999999999776 56777775 678999999999765433
No 34
>TIGR01713 typeII_sec_gspC general secretion pathway protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=98.42 E-value=1.2e-06 Score=88.74 Aligned_cols=80 Identities=18% Similarity=0.159 Sum_probs=66.1
Q ss_pred cCCCeeEEEEEecC---CcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHh-CCCCeEEEEEecCCc
Q psy9257 355 DASGLIGLRVCAIN---EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKA-APVNNIRVVIRDRPL 430 (530)
Q Consensus 355 ~s~G~LG~~V~~~~---~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~-a~G~~VtLtVrR~~~ 430 (530)
.-.+++|+.....+ .|+.|..+.++++|+++||+.||+|++|||+.+.++.+ +.+++.+ ..++.+.|+|.|+++
T Consensus 174 ~~~~~lgi~p~~~~g~~~G~~v~~v~~~s~a~~aGLr~GDvIv~ING~~i~~~~~--~~~~l~~~~~~~~v~l~V~R~G~ 251 (259)
T TIGR01713 174 KMFDYIRLSPVMKNDKLEGYRLNPGKDPSLFYKSGLQDGDIAVALNGLDLRDPEQ--AFQALQMLREETNLTLTVERDGQ 251 (259)
T ss_pred hhhheEeEEEEEeCCceeEEEEEecCCCCHHHHcCCCCCCEEEEECCEEcCCHHH--HHHHHHhcCCCCeEEEEEEECCE
Confidence 34677888876433 69999999999999999999999999999999998766 5556655 456789999999998
Q ss_pred eeeEEe
Q psy9257 431 ERTVTL 436 (530)
Q Consensus 431 e~tVtL 436 (530)
.+++.+
T Consensus 252 ~~~i~v 257 (259)
T TIGR01713 252 REDIYV 257 (259)
T ss_pred EEEEEE
Confidence 877765
No 35
>KOG3549|consensus
Probab=98.42 E-value=6.9e-07 Score=93.22 Aligned_cols=77 Identities=35% Similarity=0.558 Sum_probs=71.8
Q ss_pred CceeeEEeccCCCCccceeeccCc-------EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEE
Q psy9257 429 PLERTVTLHRDSSGHFGFHFNKGQ-------IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGGSVL 500 (530)
Q Consensus 429 ~~e~tVtL~kd~~g~LGfs~~~Gv-------V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tV 500 (530)
..+++|+|.+...|.||+++++|. |..|.++..|+..| |-+||-|++|||..|....+++++.+|+.+|++|
T Consensus 53 s~eRtVtirRQ~vGGlGLSIKGGaEHn~PvviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c~HeevV~iLRNAGdeV 132 (505)
T KOG3549|consen 53 SKERTVTIRRQKVGGLGLSIKGGAEHNLPVVISKIYKDQAADITGQLFVGDAILQVNGIYVTACPHEEVVNILRNAGDEV 132 (505)
T ss_pred CCceeEEEEeeecCcceeeeccccccCccEEeehhhhhhhhhhcCceEeeeeeEEeccEEeecCChHHHHHHHHhcCCEE
Confidence 467899999999999999999884 88899999999999 7799999999999999999999999999999999
Q ss_pred EEEEE
Q psy9257 501 TLTLI 505 (530)
Q Consensus 501 tLtVi 505 (530)
+|+|.
T Consensus 133 tlTV~ 137 (505)
T KOG3549|consen 133 TLTVK 137 (505)
T ss_pred EEEeH
Confidence 99995
No 36
>PRK11186 carboxy-terminal protease; Provisional
Probab=98.41 E-value=1e-06 Score=99.50 Aligned_cols=84 Identities=24% Similarity=0.318 Sum_probs=69.6
Q ss_pred cCCCeeEEEEEecCCcEEEEEeccCCHhhhc-CCCCCCEEEEECC-----EEcCCcCHHHHHHHHHhCCCCeEEEEEecC
Q psy9257 355 DASGLIGLRVCAINEGVFVCLVERGSPASLV-GLRFGDQILSING-----ETVAGYNMKQVHKILKAAPVNNIRVVIRDR 428 (530)
Q Consensus 355 ~s~G~LG~~V~~~~~GV~Vs~V~pGSPAakA-GLq~GDqILaING-----~~V~g~s~~~v~~LLk~a~G~~VtLtVrR~ 428 (530)
...+++|+.+...+.+++|..|.+||||+++ ||+.||+|++||| ..+.+|..+.+..+++...|..|.|+|+|.
T Consensus 241 ~~~~GIGa~l~~~~~~~~V~~vipGsPA~ka~gLk~GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG~~Gt~V~LtV~r~ 320 (667)
T PRK11186 241 LSLEGIGAVLQMDDDYTVINSLVAGGPAAKSKKLSVGDKIVGVGQDGKPIVDVIGWRLDDVVALIKGPKGSKVRLEILPA 320 (667)
T ss_pred CceeEEEEEEEEeCCeEEEEEccCCChHHHhCCCCCCCEEEEECCCCCcccccccCCHHHHHHHhcCCCCCEEEEEEEeC
Confidence 4456789999877778999999999999998 8999999999994 356688888899999999999999999873
Q ss_pred ---CceeeEEecc
Q psy9257 429 ---PLERTVTLHR 438 (530)
Q Consensus 429 ---~~e~tVtL~k 438 (530)
+..++++|.+
T Consensus 321 ~~~~~~~~vtl~R 333 (667)
T PRK11186 321 GKGTKTRIVTLTR 333 (667)
T ss_pred CCCCceEEEEEEe
Confidence 3456666543
No 37
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=98.37 E-value=1.3e-06 Score=93.72 Aligned_cols=70 Identities=24% Similarity=0.344 Sum_probs=61.2
Q ss_pred CcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEecCCceeeEEeccCC
Q psy9257 369 EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDS 440 (530)
Q Consensus 369 ~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR~~~e~tVtL~kd~ 440 (530)
.+++|..|.++|+|+++||+.||+|++|||+.+.+|.+ +.+.++...++.+.++|+|+++.+++++..+.
T Consensus 203 ~g~vV~~V~~~SpA~~aGL~~GD~Iv~Vng~~V~s~~d--l~~~l~~~~~~~v~l~v~R~g~~~~~~v~~~~ 272 (420)
T TIGR00054 203 IEPVLSDVTPNSPAEKAGLKEGDYIQSINGEKLRSWTD--FVSAVKENPGKSMDIKVERNGETLSISLTPEA 272 (420)
T ss_pred cCcEEEEECCCCHHHHcCCCCCCEEEEECCEECCCHHH--HHHHHHhCCCCceEEEEEECCEEEEEEEEEcC
Confidence 47899999999999999999999999999999998765 77777777778899999999988888776643
No 38
>KOG3834|consensus
Probab=98.36 E-value=2.9e-06 Score=90.52 Aligned_cols=136 Identities=26% Similarity=0.384 Sum_probs=98.3
Q ss_pred CCcEEEEEeccCCHhhhcCCC-CCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEec--CCceeeEEeccCCCCc-
Q psy9257 368 NEGVFVCLVERGSPASLVGLR-FGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRD--RPLERTVTLHRDSSGH- 443 (530)
Q Consensus 368 ~~GV~Vs~V~pGSPAakAGLq-~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR--~~~e~tVtL~kd~~g~- 443 (530)
..|.-|-+|+++|+|.++||. +-|.|++|||..+..- .+.+..+++... ++|+++|.. .-+.|.+.|.......
T Consensus 14 teg~hvlkVqedSpa~~aglepffdFIvSI~g~rL~~d-nd~Lk~llk~~s-ekVkltv~n~kt~~~R~v~I~ps~~wgg 91 (462)
T KOG3834|consen 14 TEGYHVLKVQEDSPAHKAGLEPFFDFIVSINGIRLNKD-NDTLKALLKANS-EKVKLTVYNSKTQEVRIVEIVPSNNWGG 91 (462)
T ss_pred ceeEEEEEeecCChHHhcCcchhhhhhheeCcccccCc-hHHHHHHHHhcc-cceEEEEEecccceeEEEEecccccccc
Confidence 456778889999999999965 6799999999999874 446677776654 449999875 4456777777655444
Q ss_pred --cceeec----cCc------EEEEccCCHHHHcCCC-CCCEEEEE-cCeecCCCChHHHHHHHH-hCCCEEEEEEEeCc
Q psy9257 444 --FGFHFN----KGQ------IVSLVKDSSAARNGLL-VNHNILEV-NGANVVGLKDKELLEAME-KGGSVLTLTLIPTS 508 (530)
Q Consensus 444 --LGfs~~----~Gv------V~sVv~gSpAarAGLr-~GDrILeV-NGq~V~gls~eeVv~iLk-rsG~tVtLtVip~~ 508 (530)
||++++ .|. |.+|.++++|+++||+ -+|.|+.+ |.+ ... .+++..+|+ ..++.+.|.|....
T Consensus 92 qllGvsvrFcsf~~A~~~vwHvl~V~p~SPaalAgl~~~~DYivG~~~~~-~~~--~eDl~~lIeshe~kpLklyVYN~D 168 (462)
T KOG3834|consen 92 QLLGVSVRFCSFDGAVESVWHVLSVEPNSPAALAGLRPYTDYIVGIWDAV-MHE--EEDLFTLIESHEGKPLKLYVYNHD 168 (462)
T ss_pred cccceEEEeccCccchhheeeeeecCCCCHHHhcccccccceEecchhhh-ccc--hHHHHHHHHhccCCCcceeEeecC
Confidence 787764 221 8899999999999999 68999988 443 222 244555554 66777888775443
No 39
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=98.36 E-value=1.1e-06 Score=95.96 Aligned_cols=135 Identities=20% Similarity=0.191 Sum_probs=95.6
Q ss_pred CchhhhcC----------ccchHHHHHHHHhhcccccccccccccccCCCCCCCCceeecCCCCccceechhcccccceE
Q psy9257 281 SLDNYMGL----------EVASELINAYARENAANERESDAAGNTVARQAPRDSCTMIAPLSSSGSGLKKAYVTNGIREL 350 (530)
Q Consensus 281 ~LddyMGL----------~l~ed~Iqa~~~~~~ai~p~~~~~~av~~~~~~~~s~gilapvSG~svGIgfAi~~~~Vr~V 350 (530)
||||+|.- +.++|++++.++.-.+. .....+.....++++...+-.+.. .|+.+-
T Consensus 380 SLDdvmram~~~~~~~~~~~t~e~v~av~~~~tg~-dl~~f~~~~i~~~~~~~l~~~l~~-----~gL~~~--------- 444 (558)
T COG3975 380 SLDDVMRALWKEFGRAERGYTPEDVQAVLENVTGL-DLATFFDEYIEGTEPPPLNPLLER-----FGLTFT--------- 444 (558)
T ss_pred cHHHHHHHHHHHhCcCccCCCHHHHHHHHHhhccc-cHHHHHHHHhhcCCCCChhhhhhh-----cceEEE---------
Confidence 79999975 67788888776643332 233334444566666666655555 444431
Q ss_pred EEeccCCCeeEEEEEecCCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEecCCc
Q psy9257 351 VLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPL 430 (530)
Q Consensus 351 ~L~K~s~G~LG~~V~~~~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR~~~ 430 (530)
-...+..+||+.+...+.+.+|..|.++|||.+|||..||.|++|||..- ++.+...++.|.+++.|+++
T Consensus 445 -~~~~~~~~LGl~v~~~~g~~~i~~V~~~gPA~~AGl~~Gd~ivai~G~s~---------~l~~~~~~d~i~v~~~~~~~ 514 (558)
T COG3975 445 -PKPREAYYLGLKVKSEGGHEKITFVFPGGPAYKAGLSPGDKIVAINGISD---------QLDRYKVNDKIQVHVFREGR 514 (558)
T ss_pred -ecCCCCcccceEecccCCeeEEEecCCCChhHhccCCCccEEEEEcCccc---------cccccccccceEEEEccCCc
Confidence 11123568999999888899999999999999999999999999999911 12223456889999999888
Q ss_pred eeeEEeccCC
Q psy9257 431 ERTVTLHRDS 440 (530)
Q Consensus 431 e~tVtL~kd~ 440 (530)
-+++.++...
T Consensus 515 L~e~~v~~~~ 524 (558)
T COG3975 515 LREFLVKLGG 524 (558)
T ss_pred eEEeecccCC
Confidence 8877665543
No 40
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.
Probab=98.33 E-value=8.7e-06 Score=75.57 Aligned_cols=105 Identities=26% Similarity=0.389 Sum_probs=71.1
Q ss_pred cccceEEEec----cCCCeeEEEEEec------CCcEEEEEeccCCHhhhcCCCC-CCEEEEECCEEcCCcCHHHHHHHH
Q psy9257 345 NGIRELVLCK----DASGLIGLRVCAI------NEGVFVCLVERGSPASLVGLRF-GDQILSINGETVAGYNMKQVHKIL 413 (530)
Q Consensus 345 ~~Vr~V~L~K----~s~G~LG~~V~~~------~~GV~Vs~V~pGSPAakAGLq~-GDqILaING~~V~g~s~~~v~~LL 413 (530)
...|+|.+.- +..+.||++++-. ..++-|..|.+||||++|||++ .|.|+.+|+..+.+.++ +.+++
T Consensus 9 ~~~R~v~i~ps~~w~~~g~LG~sv~~~~~~~~~~~~~~Vl~V~p~SPA~~AGL~p~~DyIig~~~~~l~~~~~--l~~~v 86 (138)
T PF04495_consen 9 QTTREVSIVPSKKWGGQGLLGISVRFESFEGAEEEGWHVLRVAPNSPAAKAGLEPFFDYIIGIDGGLLDDEDD--LFELV 86 (138)
T ss_dssp SSEEEEEE---SSSSSSSSS-EEEEEEE-TTGCCCEEEEEEE-TTSHHHHTT--TTTEEEEEETTCE--STCH--HHHHH
T ss_pred CeEEEEEEccCcccCCCCCCcEEEEEecccccccceEEEeEecCCCHHHHCCccccccEEEEccceecCCHHH--HHHHH
Confidence 3445555521 3356789888852 3678899999999999999997 79999999999887544 77788
Q ss_pred HhCCCCeEEEEEec--CCceeeEEeccC----CCCccceeeccC
Q psy9257 414 KAAPVNNIRVVIRD--RPLERTVTLHRD----SSGHFGFHFNKG 451 (530)
Q Consensus 414 k~a~G~~VtLtVrR--~~~e~tVtL~kd----~~g~LGfs~~~G 451 (530)
+...+..+.|.|.+ ....|+|+|... ..+.||+.+..|
T Consensus 87 ~~~~~~~l~L~Vyns~~~~vR~V~i~P~~~WgG~GlLGc~ig~G 130 (138)
T PF04495_consen 87 EANENKPLQLYVYNSKTDSVREVTITPSRNWGGRGLLGCHIGYG 130 (138)
T ss_dssp HHTTTS-EEEEEEETTTTCEEEEEE---TTSSSSTSSSEEEE-S
T ss_pred HHcCCCcEEEEEEECCCCeEEEEEEEcCCCCCCCeeeeEEecce
Confidence 88888899999975 455678888654 467799988655
No 41
>TIGR02860 spore_IV_B stage IV sporulation protein B. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.
Probab=98.32 E-value=3.2e-06 Score=90.49 Aligned_cols=87 Identities=22% Similarity=0.377 Sum_probs=67.8
Q ss_pred CeeEEEEEecCCcEEEEEec--------cCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEecCC
Q psy9257 358 GLIGLRVCAINEGVFVCLVE--------RGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRP 429 (530)
Q Consensus 358 G~LG~~V~~~~~GV~Vs~V~--------pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR~~ 429 (530)
..+|+.+. .+||+|.... .+++|+++||+.||+|++|||+.+.+|.+ +.++++...+..+.|+|+|++
T Consensus 96 ~~iGI~l~--t~GVlVvg~~~v~~~~g~~~SPAa~AGLq~GDiIvsING~~V~s~~D--L~~iL~~~~g~~V~LtV~R~G 171 (402)
T TIGR02860 96 QSIGVKLN--TKGVLVVGFSDIETEKGKIHSPGEEAGIQIGDRILKINGEKIKNMDD--LANLINKAGGEKLTLTIERGG 171 (402)
T ss_pred EEEEEEEe--cCEEEEEEEEcccccCCCCCCHHHHcCCCCCCEEEEECCEECCCHHH--HHHHHHhCCCCeEEEEEEECC
Confidence 34677765 6899987653 25899999999999999999999999866 678887777889999999988
Q ss_pred ceeeEEecc-----CCCCccceee
Q psy9257 430 LERTVTLHR-----DSSGHFGFHF 448 (530)
Q Consensus 430 ~e~tVtL~k-----d~~g~LGfs~ 448 (530)
+..++.+.. +....+|+.+
T Consensus 172 e~~tv~V~Pv~~~~d~~ykLGl~V 195 (402)
T TIGR02860 172 KIIETVIKPVKDKEEGRYRIGLYI 195 (402)
T ss_pred EEEEEEEEEeeeCCCCCEEEEEEE
Confidence 887777652 3334567654
No 42
>KOG3550|consensus
Probab=98.30 E-value=2e-06 Score=81.11 Aligned_cols=79 Identities=30% Similarity=0.464 Sum_probs=65.8
Q ss_pred ceEEEeccCCCeeEEEEEecC---CcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEE
Q psy9257 348 RELVLCKDASGLIGLRVCAIN---EGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRV 423 (530)
Q Consensus 348 r~V~L~K~s~G~LG~~V~~~~---~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtL 423 (530)
|.|.+-|- ..+|||.+.++. ..++|+++.+|+.|++-| |+.||++++|||..|.+-.++++..+|+.+. ..|.|
T Consensus 92 rvvelpkt-deglgfnvmggkeqnspiyisriipggvadrhgglkrgdqllsvngvsvege~hekavellkaa~-gsvkl 169 (207)
T KOG3550|consen 92 RVVELPKT-DEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAV-GSVKL 169 (207)
T ss_pred ceeecCcc-ccccceeeccCcccCCceEEEeecCCccccccCcccccceeEeecceeecchhhHHHHHHHHHhc-CcEEE
Confidence 34444454 455999998754 679999999999999977 9999999999999999999999999998876 45888
Q ss_pred EEecC
Q psy9257 424 VIRDR 428 (530)
Q Consensus 424 tVrR~ 428 (530)
+|+-.
T Consensus 170 vvryt 174 (207)
T KOG3550|consen 170 VVRYT 174 (207)
T ss_pred EEecC
Confidence 88753
No 43
>KOG3550|consensus
Probab=98.28 E-value=1.6e-06 Score=81.75 Aligned_cols=87 Identities=25% Similarity=0.431 Sum_probs=71.6
Q ss_pred ceeeEEeccCCCCccceeeccCc-------EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEE
Q psy9257 430 LERTVTLHRDSSGHFGFHFNKGQ-------IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLT 501 (530)
Q Consensus 430 ~e~tVtL~kd~~g~LGfs~~~Gv-------V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVt 501 (530)
..+.+.|.|...+ |||.+-+|+ |..|.+|+.|++.| |+.||++++|||++|.+-.++..+.+|+.+-+.++
T Consensus 90 hprvvelpktdeg-lgfnvmggkeqnspiyisriipggvadrhgglkrgdqllsvngvsvege~hekavellkaa~gsvk 168 (207)
T KOG3550|consen 90 HPRVVELPKTDEG-LGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAVGSVK 168 (207)
T ss_pred CCceeecCccccc-cceeeccCcccCCceEEEeecCCccccccCcccccceeEeecceeecchhhHHHHHHHHHhcCcEE
Confidence 3456777776655 999998885 99999999999986 99999999999999999999999999999999999
Q ss_pred EEEEeC-cchhhhhhcc
Q psy9257 502 LTLIPT-SMYQHMMKKM 517 (530)
Q Consensus 502 LtVip~-~~~e~m~kkL 517 (530)
|+|.-. +..+.|..+.
T Consensus 169 lvvrytpkvleeme~rf 185 (207)
T KOG3550|consen 169 LVVRYTPKVLEEMEARF 185 (207)
T ss_pred EEEecChHHHHHHHHHH
Confidence 998643 3344454443
No 44
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=98.27 E-value=2.1e-06 Score=92.62 Aligned_cols=78 Identities=22% Similarity=0.373 Sum_probs=63.3
Q ss_pred eEEEEEecCCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEecCCceeeEEeccC
Q psy9257 360 IGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRD 439 (530)
Q Consensus 360 LG~~V~~~~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR~~~e~tVtL~kd 439 (530)
+|++......+++|..|.++|+|+++||+.||+|++|||+.+.+|.+ +.+.++...++.+.++|.|+++.+++++..+
T Consensus 212 lGl~~~~~~~~~vV~~V~~~SpA~~AGL~~GDvIl~Ing~~V~s~~d--l~~~l~~~~~~~v~l~v~R~g~~~~~~v~~~ 289 (449)
T PRK10779 212 LGIRPRGPQIEPVLAEVQPNSAASKAGLQAGDRIVKVDGQPLTQWQT--FVTLVRDNPGKPLALEIERQGSPLSLTLTPD 289 (449)
T ss_pred ccccccCCCcCcEEEeeCCCCHHHHcCCCCCCEEEEECCEEcCCHHH--HHHHHHhCCCCEEEEEEEECCEEEEEEEEee
Confidence 56543322346899999999999999999999999999999998766 6677777677889999999988877776543
No 45
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=98.26 E-value=3.6e-06 Score=90.00 Aligned_cols=76 Identities=34% Similarity=0.454 Sum_probs=62.7
Q ss_pred CeeEEEEEec-------------CCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhC-CCCeEEE
Q psy9257 358 GLIGLRVCAI-------------NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAA-PVNNIRV 423 (530)
Q Consensus 358 G~LG~~V~~~-------------~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a-~G~~VtL 423 (530)
.++|+.+... ..|++|..|.++|+|+++||+.||+|++|||+.+.++.+ +.++++.. .++.+.|
T Consensus 338 ~~lGi~~~~l~~~~~~~~~l~~~~~Gv~V~~V~~~SpA~~aGL~~GDvI~~Ing~~V~s~~d--~~~~l~~~~~g~~v~l 415 (428)
T TIGR02037 338 PFLGLTVANLSPEIRKELRLKGDVKGVVVTKVVSGSPAARAGLQPGDVILSVNQQPVSSVAE--LRKVLDRAKKGGRVAL 415 (428)
T ss_pred cccceEEecCCHHHHHHcCCCcCcCceEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCHHH--HHHHHHhcCCCCEEEE
Confidence 4678887741 168999999999999999999999999999999998755 67777653 5788999
Q ss_pred EEecCCceeeEE
Q psy9257 424 VIRDRPLERTVT 435 (530)
Q Consensus 424 tVrR~~~e~tVt 435 (530)
+|.|+++.+.+.
T Consensus 416 ~v~R~g~~~~~~ 427 (428)
T TIGR02037 416 LILRGGATIFVT 427 (428)
T ss_pred EEEECCEEEEEE
Confidence 999988776654
No 46
>KOG3551|consensus
Probab=98.22 E-value=1.2e-06 Score=92.48 Aligned_cols=76 Identities=26% Similarity=0.493 Sum_probs=69.1
Q ss_pred eeeEEeccCCCCccceeeccCc-------EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEE
Q psy9257 431 ERTVTLHRDSSGHFGFHFNKGQ-------IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTL 502 (530)
Q Consensus 431 e~tVtL~kd~~g~LGfs~~~Gv-------V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtL 502 (530)
++.|++.|...+.||+++++|. |..|.+|-.|++.+ |..||.|++|||.++.+.++++.++.|||.|++|.|
T Consensus 85 ~R~V~V~K~d~gGLGISIKGGreNkMPIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLKraGkeV~l 164 (506)
T KOG3551|consen 85 ERRVRVVKQDAGGLGISIKGGRENKMPILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQALKRAGKEVLL 164 (506)
T ss_pred cceeEEEEecCCcceEEeecCcccCCceehhHhccccccccccceeeccEEEEecchhhhhcchHHHHHHHHhhCceeee
Confidence 4667777888888999999885 88999999999998 999999999999999999999999999999999999
Q ss_pred EEEe
Q psy9257 503 TLIP 506 (530)
Q Consensus 503 tVip 506 (530)
.|.-
T Consensus 165 evKy 168 (506)
T KOG3551|consen 165 EVKY 168 (506)
T ss_pred eeee
Confidence 8853
No 47
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.21 E-value=5.9e-06 Score=67.97 Aligned_cols=65 Identities=26% Similarity=0.449 Sum_probs=53.7
Q ss_pred ccceeecc---C-cEEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHh-CCCEEEEEEEeC
Q psy9257 443 HFGFHFNK---G-QIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEK-GGSVLTLTLIPT 507 (530)
Q Consensus 443 ~LGfs~~~---G-vV~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkr-sG~tVtLtVip~ 507 (530)
.||+.+.. + .|..|.++++|+++||+.||+|++|||+.+.++...++...++. .+..+.+++.+.
T Consensus 3 ~lG~~~~~~~~~~~V~~v~~~s~a~~~gl~~GD~I~~vng~~i~~~~~~~~~~~l~~~~~~~i~l~v~r~ 72 (85)
T cd00988 3 GIGLELKYDDGGLVITSVLPGSPAAKAGIKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGTKVRLTLKRG 72 (85)
T ss_pred EEEEEEEEcCCeEEEEEecCCCCHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCEEEEEEEcC
Confidence 36666642 2 28899999999999999999999999999999977788887764 578899999876
No 48
>KOG3553|consensus
Probab=98.17 E-value=2.4e-06 Score=75.67 Aligned_cols=68 Identities=28% Similarity=0.542 Sum_probs=55.8
Q ss_pred eeEEEEEec-------------CCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEE
Q psy9257 359 LIGLRVCAI-------------NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVI 425 (530)
Q Consensus 359 ~LG~~V~~~-------------~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtV 425 (530)
.+||.+.++ +.|++|.+|.+||||+.|||+.+|.|+++||-+..-++++++.+.+++. ..+.+.|
T Consensus 36 ~~GFkIGGGIDQDp~k~Pf~ytD~GiYvT~V~eGsPA~~AGLrihDKIlQvNG~DfTMvTHd~Avk~i~k~--~vl~mLV 113 (124)
T KOG3553|consen 36 ILGFKIGGGIDQDPSKNPFSYTDKGIYVTRVSEGSPAEIAGLRIHDKILQVNGWDFTMVTHDQAVKRITKE--EVLRMLV 113 (124)
T ss_pred EEEEEeccccCCCcccCCCCcCCccEEEEEeccCChhhhhcceecceEEEecCceeEEEEhHHHHHHhhHh--HHHHHHH
Confidence 367777652 3899999999999999999999999999999999999999998888663 3444555
Q ss_pred ecC
Q psy9257 426 RDR 428 (530)
Q Consensus 426 rR~ 428 (530)
.|.
T Consensus 114 aR~ 116 (124)
T KOG3553|consen 114 ARQ 116 (124)
T ss_pred Hhh
Confidence 553
No 49
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=98.15 E-value=2e-05 Score=68.16 Aligned_cols=76 Identities=30% Similarity=0.451 Sum_probs=54.6
Q ss_pred CeeEEEEEecCCcEEEEEeccC--------CHhhhcC--CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEec
Q psy9257 358 GLIGLRVCAINEGVFVCLVERG--------SPASLVG--LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRD 427 (530)
Q Consensus 358 G~LG~~V~~~~~GV~Vs~V~pG--------SPAakAG--Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR 427 (530)
|.||..+.-.+.+..|.+|.++ ||-.+.| ++.||.|++|||+.+..-.. ...+|....+..|.|+|.+
T Consensus 1 G~LGAd~~~~~~~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~~~~~--~~~lL~~~agk~V~Ltv~~ 78 (88)
T PF14685_consen 1 GLLGADFSYDNGGYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPVTADAN--PYRLLEGKAGKQVLLTVNR 78 (88)
T ss_dssp -B-SEEEEEETTEEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE-BTTB---HHHHHHTTTTSEEEEEEE-
T ss_pred CccceEEEEcCCEEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEECCCCCC--HHHHhcccCCCEEEEEEec
Confidence 4578888777788889999987 6777778 67999999999999987555 7888888889999999998
Q ss_pred CC-ceeeEE
Q psy9257 428 RP-LERTVT 435 (530)
Q Consensus 428 ~~-~e~tVt 435 (530)
.+ ..+++.
T Consensus 79 ~~~~~R~v~ 87 (88)
T PF14685_consen 79 KPGGARTVV 87 (88)
T ss_dssp STT-EEEEE
T ss_pred CCCCceEEE
Confidence 65 456654
No 50
>PRK10942 serine endoprotease; Provisional
Probab=98.08 E-value=1.2e-05 Score=87.70 Aligned_cols=65 Identities=29% Similarity=0.450 Sum_probs=56.2
Q ss_pred CcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEecCCceeeEEe
Q psy9257 369 EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTL 436 (530)
Q Consensus 369 ~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR~~~e~tVtL 436 (530)
.|++|..|.++|+|+++||+.||+|++|||+.|.++.+ +.++++... ..+.|+|+|++..+.+.+
T Consensus 408 ~gvvV~~V~~~S~A~~aGL~~GDvIv~VNg~~V~s~~d--l~~~l~~~~-~~v~l~V~R~g~~~~v~~ 472 (473)
T PRK10942 408 KGVVVDNVKPGTPAAQIGLKKGDVIIGANQQPVKNIAE--LRKILDSKP-SVLALNIQRGDSSIYLLM 472 (473)
T ss_pred CCeEEEEeCCCChHHHcCCCCCCEEEEECCEEcCCHHH--HHHHHHhCC-CeEEEEEEECCEEEEEEe
Confidence 58999999999999999999999999999999999755 677777644 789999999887766554
No 51
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.08 E-value=1.2e-05 Score=66.62 Aligned_cols=54 Identities=30% Similarity=0.546 Sum_probs=47.4
Q ss_pred EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHh--CCCEEEEEEEeCc
Q psy9257 453 IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEK--GGSVLTLTLIPTS 508 (530)
Q Consensus 453 V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkr--sG~tVtLtVip~~ 508 (530)
|..|.++++|+++||+.||+|++|||+.+.++ +++...+.. .++.+.+++.|..
T Consensus 14 V~~V~~~spa~~aGL~~GDiI~~Ing~~v~~~--~d~~~~l~~~~~g~~v~l~v~r~g 69 (79)
T cd00991 14 IVGVIVGSPAENAVLHTGDVIYSINGTPITTL--EDFMEALKPTKPGEVITVTVLPST 69 (79)
T ss_pred EEEECCCChHHhcCCCCCCEEEEECCEEcCCH--HHHHHHHhcCCCCCEEEEEEEECC
Confidence 88999999999999999999999999999987 468777774 3788999998765
No 52
>PRK10139 serine endoprotease; Provisional
Probab=98.06 E-value=1.2e-05 Score=87.41 Aligned_cols=65 Identities=29% Similarity=0.387 Sum_probs=56.3
Q ss_pred CcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEecCCceeeEEe
Q psy9257 369 EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTL 436 (530)
Q Consensus 369 ~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR~~~e~tVtL 436 (530)
.|++|..|.++|+|+++||+.||+|++|||+.+.+|.+ +.+++++.. +.+.|+|+|+++.+.+.+
T Consensus 390 ~Gv~V~~V~~~spA~~aGL~~GD~I~~Ing~~v~~~~~--~~~~l~~~~-~~v~l~v~R~g~~~~~~~ 454 (455)
T PRK10139 390 KGIKIDEVVKGSPAAQAGLQKDDVIIGVNRDRVNSIAE--MRKVLAAKP-AIIALQIVRGNESIYLLL 454 (455)
T ss_pred CceEEEEeCCCChHHHcCCCCCCEEEEECCEEcCCHHH--HHHHHHhCC-CeEEEEEEECCEEEEEEe
Confidence 58999999999999999999999999999999999866 677776654 788999999887776654
No 53
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.05 E-value=2.4e-05 Score=63.37 Aligned_cols=55 Identities=33% Similarity=0.495 Sum_probs=47.0
Q ss_pred cEEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHh-CCCEEEEEEEeCc
Q psy9257 452 QIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEK-GGSVLTLTLIPTS 508 (530)
Q Consensus 452 vV~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkr-sG~tVtLtVip~~ 508 (530)
.|..|.++++|+++||+.||+|++|||+++.++ +++...++. .++.+.+++.|..
T Consensus 15 ~V~~v~~~s~a~~~gl~~GD~I~~ing~~i~~~--~~~~~~l~~~~~~~~~l~v~r~~ 70 (79)
T cd00989 15 VIGEVVPGSPAAKAGLKAGDRILAINGQKIKSW--EDLVDAVQENPGKPLTLTVERNG 70 (79)
T ss_pred EEEeECCCCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHHCCCceEEEEEEECC
Confidence 388999999999999999999999999999987 567777764 3678899888765
No 54
>KOG3549|consensus
Probab=98.03 E-value=1.1e-05 Score=84.45 Aligned_cols=80 Identities=24% Similarity=0.385 Sum_probs=71.2
Q ss_pred ccceEEEeccCCCeeEEEEEecC---CcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeE
Q psy9257 346 GIRELVLCKDASGLIGLRVCAIN---EGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNI 421 (530)
Q Consensus 346 ~Vr~V~L~K~s~G~LG~~V~~~~---~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~V 421 (530)
.-|.|.+.+-.-|+||+.+.++. -.|+|+++.++-.|+..| |=.||-|++|||..|....++++..+|+++ |+.|
T Consensus 54 ~eRtVtirRQ~vGGlGLSIKGGaEHn~PvviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c~HeevV~iLRNA-GdeV 132 (505)
T KOG3549|consen 54 KERTVTIRRQKVGGLGLSIKGGAEHNLPVVISKIYKDQAADITGQLFVGDAILQVNGIYVTACPHEEVVNILRNA-GDEV 132 (505)
T ss_pred CceeEEEEeeecCcceeeeccccccCccEEeehhhhhhhhhhcCceEeeeeeEEeccEEeecCChHHHHHHHHhc-CCEE
Confidence 34678888878889999999864 569999999999999999 788999999999999999999999999885 7889
Q ss_pred EEEEe
Q psy9257 422 RVVIR 426 (530)
Q Consensus 422 tLtVr 426 (530)
+|+|.
T Consensus 133 tlTV~ 137 (505)
T KOG3549|consen 133 TLTVK 137 (505)
T ss_pred EEEeH
Confidence 99985
No 55
>KOG3551|consensus
Probab=98.01 E-value=7e-06 Score=86.78 Aligned_cols=78 Identities=24% Similarity=0.403 Sum_probs=69.4
Q ss_pred ceEEEeccCCCeeEEEEEecC---CcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEE
Q psy9257 348 RELVLCKDASGLIGLRVCAIN---EGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRV 423 (530)
Q Consensus 348 r~V~L~K~s~G~LG~~V~~~~---~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtL 423 (530)
|.|++.|-..|+|||+++++. ..++|+.+.+|-.|++.+ |..||.|++|||+++.+.+++++++.||.+ |+.|.+
T Consensus 86 R~V~V~K~d~gGLGISIKGGreNkMPIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLKra-GkeV~l 164 (506)
T KOG3551|consen 86 RRVRVVKQDAGGLGISIKGGRENKMPILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQALKRA-GKEVLL 164 (506)
T ss_pred ceeEEEEecCCcceEEeecCcccCCceehhHhccccccccccceeeccEEEEecchhhhhcchHHHHHHHHhh-Cceeee
Confidence 678888888888999999853 679999999999999999 999999999999999999999999999775 677777
Q ss_pred EEe
Q psy9257 424 VIR 426 (530)
Q Consensus 424 tVr 426 (530)
.|+
T Consensus 165 evK 167 (506)
T KOG3551|consen 165 EVK 167 (506)
T ss_pred eee
Confidence 764
No 56
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=97.94 E-value=3.1e-05 Score=81.29 Aligned_cols=56 Identities=30% Similarity=0.547 Sum_probs=48.5
Q ss_pred EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHH--hCCCEEEEEEEeCcch
Q psy9257 453 IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAME--KGGSVLTLTLIPTSMY 510 (530)
Q Consensus 453 V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLk--rsG~tVtLtVip~~~~ 510 (530)
|..|.++++|+++||+.||+|++|||+.+.++ +++...++ +.|+.+.|+|.|....
T Consensus 282 V~~V~~~spA~~aGL~~GDvI~~Ing~~V~s~--~dl~~~l~~~~~g~~v~l~v~R~g~~ 339 (351)
T TIGR02038 282 ITGVDPNGPAARAGILVRDVILKYDGKDVIGA--EELMDRIAETRPGSKVMVTVLRQGKQ 339 (351)
T ss_pred EeecCCCChHHHCCCCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEECCEE
Confidence 88999999999999999999999999999988 46767665 4688999999987643
No 57
>KOG1421|consensus
Probab=97.93 E-value=5.8e-05 Score=84.51 Aligned_cols=127 Identities=19% Similarity=0.218 Sum_probs=92.6
Q ss_pred Cc-EEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEecCCceeeEEeccCCCCc----
Q psy9257 369 EG-VFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSSGH---- 443 (530)
Q Consensus 369 ~G-V~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR~~~e~tVtL~kd~~g~---- 443 (530)
.| ++|..|.++|+|++. |+.||.+++||+..+.++.. +.++|.+..|+.+.|+|.|.+++.++++.-+....
T Consensus 302 tgmLvV~~vL~~gpa~k~-Le~GDillavN~t~l~df~~--l~~iLDegvgk~l~LtI~Rggqelel~vtvqdlh~itp~ 378 (955)
T KOG1421|consen 302 TGMLVVETVLPEGPAEKK-LEPGDILLAVNSTCLNDFEA--LEQILDEGVGKNLELTIQRGGQELELTVTVQDLHGITPD 378 (955)
T ss_pred ceeEEEEEeccCCchhhc-cCCCcEEEEEcceehHHHHH--HHHHHhhccCceEEEEEEeCCEEEEEEEEeccccCCCCc
Confidence 45 568899999999986 99999999999988877544 78888888899999999999998887764332111
Q ss_pred -------------------cceeeccCc-EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHH--hCCCEEE
Q psy9257 444 -------------------FGFHFNKGQ-IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAME--KGGSVLT 501 (530)
Q Consensus 444 -------------------LGfs~~~Gv-V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLk--rsG~tVt 501 (530)
+++-..+|+ |.+-. ++++.+.++. |-.|.+|+++++-++ ..+.+.++ ..|..|.
T Consensus 379 R~levcGav~hdlsyq~ar~y~lP~~GvyVa~~~-gsf~~~~~~y-~~ii~~vanK~tPdL--daFidvlk~L~dg~rV~ 454 (955)
T KOG1421|consen 379 RFLEVCGAVFHDLSYQLARLYALPVEGVYVASPG-GSFRHRGPRY-GQIIDSVANKPTPDL--DAFIDVLKELPDGARVP 454 (955)
T ss_pred eEEEEcceEecCCCHHHHhhcccccCcEEEccCC-CCccccCCcc-eEEEEeecCCcCCCH--HHHHHHHHhccCCCeee
Confidence 222222454 33333 6777777766 888999999999998 45777766 3444444
Q ss_pred E
Q psy9257 502 L 502 (530)
Q Consensus 502 L 502 (530)
+
T Consensus 455 v 455 (955)
T KOG1421|consen 455 V 455 (955)
T ss_pred E
Confidence 3
No 58
>KOG0609|consensus
Probab=97.92 E-value=5.2e-05 Score=83.09 Aligned_cols=85 Identities=24% Similarity=0.386 Sum_probs=73.1
Q ss_pred cccccceEEEeccCCCeeEEEEEecCC-cEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCe
Q psy9257 343 VTNGIRELVLCKDASGLIGLRVCAINE-GVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNN 420 (530)
Q Consensus 343 ~~~~Vr~V~L~K~s~G~LG~~V~~~~~-GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~ 420 (530)
....+|.|.+.|..+..+|++++.... .++|+++..|+.+++.| |+.||.|++|||..+.+..-.++..+|++.. ..
T Consensus 119 ~~~~vriv~i~k~~~eplG~Tik~~e~~~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~~~-G~ 197 (542)
T KOG0609|consen 119 PVEAVRIVRIVKNTGEPLGATIRVEEDTKVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQELLRNSR-GS 197 (542)
T ss_pred ccceeEEEEEeecCCCccceEEEeccCCccEEeeeccCCcchhccceeeccchheecCeecccCCHHHHHHHHHhCC-Cc
Confidence 345677788888878889999997444 59999999999999999 8999999999999999999999999999887 66
Q ss_pred EEEEEecC
Q psy9257 421 IRVVIRDR 428 (530)
Q Consensus 421 VtLtVrR~ 428 (530)
|++.|...
T Consensus 198 itfkiiP~ 205 (542)
T KOG0609|consen 198 ITFKIIPS 205 (542)
T ss_pred EEEEEccc
Confidence 78877643
No 59
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.90 E-value=4.2e-05 Score=62.33 Aligned_cols=64 Identities=27% Similarity=0.499 Sum_probs=47.8
Q ss_pred cceeecc--C--cEEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEEEEeCcch
Q psy9257 444 FGFHFNK--G--QIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPTSMY 510 (530)
Q Consensus 444 LGfs~~~--G--vV~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLtVip~~~~ 510 (530)
+|+.+.. + .|.+|.++++|+++||+.||+|++|||+++.++. ++...+ +.++.+.+++.+....
T Consensus 3 ~G~~~~~~~~~~~V~~V~~~s~a~~aGl~~GD~I~~Ing~~v~~~~--~~l~~~-~~~~~v~l~v~r~g~~ 70 (80)
T cd00990 3 LGLTLDKEEGLGKVTFVRDDSPADKAGLVAGDELVAVNGWRVDALQ--DRLKEY-QAGDPVELTVFRDDRL 70 (80)
T ss_pred ccEEEEccCCcEEEEEECCCChHHHhCCCCCCEEEEECCEEhHHHH--HHHHhc-CCCCEEEEEEEECCEE
Confidence 5666642 2 3889999999999999999999999999998642 222221 3567899999876533
No 60
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.88 E-value=4.5e-05 Score=62.98 Aligned_cols=54 Identities=33% Similarity=0.444 Sum_probs=46.6
Q ss_pred EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHh--CCCEEEEEEEeCc
Q psy9257 453 IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEK--GGSVLTLTLIPTS 508 (530)
Q Consensus 453 V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkr--sG~tVtLtVip~~ 508 (530)
|..|.++++|+++||+.||+|++|||+.+.++. ++..++.. .++.+.+++.+..
T Consensus 28 V~~v~~~s~a~~~gl~~GD~I~~Ing~~i~~~~--~~~~~l~~~~~~~~i~l~v~r~g 83 (90)
T cd00987 28 VASVDPGSPAAKAGLKPGDVILAVNGKPVKSVA--DLRRALAELKPGDKVTLTVLRGG 83 (90)
T ss_pred EEEECCCCHHHHcCCCcCCEEEEECCEECCCHH--HHHHHHHhcCCCCEEEEEEEECC
Confidence 889999999999999999999999999999874 56666664 3788999998765
No 61
>KOG1320|consensus
Probab=97.88 E-value=2e-05 Score=85.76 Aligned_cols=137 Identities=18% Similarity=0.188 Sum_probs=91.4
Q ss_pred hhcccccccccccccccCCCCCCCCceeecCCCCccceechhcccccceEEEe--------cc------CCCeeEEEEE-
Q psy9257 301 ENAANERESDAAGNTVARQAPRDSCTMIAPLSSSGSGLKKAYVTNGIRELVLC--------KD------ASGLIGLRVC- 365 (530)
Q Consensus 301 ~~~ai~p~~~~~~av~~~~~~~~s~gilapvSG~svGIgfAi~~~~Vr~V~L~--------K~------s~G~LG~~V~- 365 (530)
++.++++++.++..++.-|+.++.+.+-.-..|=+-||+|+++.+.+....+. +. .+.++|+...
T Consensus 297 td~ai~~~nsg~~ll~~DG~~IgVn~~~~~ri~~~~~iSf~~p~d~vl~~v~r~~e~~~~lr~~~~~~p~~~~~g~~s~~ 376 (473)
T KOG1320|consen 297 TDAAINPGNSGGPLLNLDGEVIGVNTRKVTRIGFSHGISFKIPIDTVLVIVLRLGEFQISLRPVKPLVPVHQYIGLPSYY 376 (473)
T ss_pred cchhhhcccCCCcEEEecCcEeeeeeeeeEEeeccccceeccCchHhhhhhhhhhhhceeeccccCcccccccCCceeEE
Confidence 89999988887777776666665433322223334677787754444332221 10 0123332211
Q ss_pred --------e--c--------CCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCC-CCeEEEEEe
Q psy9257 366 --------A--I--------NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAP-VNNIRVVIR 426 (530)
Q Consensus 366 --------~--~--------~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~-G~~VtLtVr 426 (530)
. . ..+++|..|.+|+++...|+..||+|++|||+.|.+..+ +..+++.+. ++.|.+..+
T Consensus 377 i~~g~vf~~~~~~~~~~~~~~q~v~is~Vlp~~~~~~~~~~~g~~V~~vng~~V~n~~~--l~~~i~~~~~~~~v~vl~~ 454 (473)
T KOG1320|consen 377 IFAGLVFVPLTKSYIFPSGVVQLVLVSQVLPGSINGGYGLKPGDQVVKVNGKPVKNLKH--LYELIEECSTEDKVAVLDR 454 (473)
T ss_pred EecceEEeecCCCccccccceeEEEEEEeccCCCcccccccCCCEEEEECCEEeechHH--HHHHHHhcCcCceEEEEEe
Confidence 1 1 147899999999999999999999999999999999877 777776654 357777778
Q ss_pred cCCceeeEEeccC
Q psy9257 427 DRPLERTVTLHRD 439 (530)
Q Consensus 427 R~~~e~tVtL~kd 439 (530)
|..++.++.+.+.
T Consensus 455 ~~~e~~tl~Il~~ 467 (473)
T KOG1320|consen 455 RSAEDATLEILPE 467 (473)
T ss_pred cCccceeEEeccc
Confidence 8777777776544
No 62
>KOG3651|consensus
Probab=97.83 E-value=3.5e-05 Score=79.54 Aligned_cols=77 Identities=27% Similarity=0.486 Sum_probs=67.0
Q ss_pred eEEEeccCCCeeEEEEEecC---CcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEE
Q psy9257 349 ELVLCKDASGLIGLRVCAIN---EGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVV 424 (530)
Q Consensus 349 ~V~L~K~s~G~LG~~V~~~~---~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLt 424 (530)
.|.+.|+..+-+|+++.++. ..++|..|..++||++.| ++.||.|++|||..|.+.+...+.++++... +.|+++
T Consensus 7 ~v~ltKD~~nliGISIGGGapyCPClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~~~-~eV~Ih 85 (429)
T KOG3651|consen 7 TVELTKDEKNLIGISIGGGAPYCPCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQVSL-NEVKIH 85 (429)
T ss_pred cEEEeeccccceeEEecCCCCcCCeEEEEEeccCCchhccCccccCCeeEEecceeecCccHHHHHHHHHHhc-cceEEE
Confidence 57788999999999998765 568899999999999999 9999999999999999999888888887654 567777
Q ss_pred Ee
Q psy9257 425 IR 426 (530)
Q Consensus 425 Vr 426 (530)
+.
T Consensus 86 yN 87 (429)
T KOG3651|consen 86 YN 87 (429)
T ss_pred eh
Confidence 64
No 63
>KOG3606|consensus
Probab=97.80 E-value=7.1e-05 Score=76.38 Aligned_cols=89 Identities=25% Similarity=0.407 Sum_probs=72.8
Q ss_pred echhcccccceEEEec-cCCCeeEEEEEecC------------CcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCc
Q psy9257 339 KKAYVTNGIRELVLCK-DASGLIGLRVCAIN------------EGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGY 404 (530)
Q Consensus 339 gfAi~~~~Vr~V~L~K-~s~G~LG~~V~~~~------------~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~ 404 (530)
...++-..-|.|+++| +....|||-++.+. .|+||++..+|+-|+..| |-..|.|++|||..|.+.
T Consensus 151 DVDivPEtHRRVRL~khG~ekPLGFYIRDG~SVRVtp~GlekvpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGK 230 (358)
T KOG3606|consen 151 DVDIVPETHRRVRLHKHGSEKPLGFYIRDGTSVRVTPHGLEKVPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGK 230 (358)
T ss_pred eecccchhhhheehhhcCCCCCceEEEecCceEEeccccccccCceEEEeecCCccccccceeeecceeEEEcCEEeccc
Confidence 3444556667888876 66677999988743 689999999999999999 788999999999999999
Q ss_pred CHHHHHHHHHhCCCCeEEEEEecC
Q psy9257 405 NMKQVHKILKAAPVNNIRVVIRDR 428 (530)
Q Consensus 405 s~~~v~~LLk~a~G~~VtLtVrR~ 428 (530)
+.+++..++-.. ...+.++|+-.
T Consensus 231 TLDQVTDMMvAN-shNLIiTVkPA 253 (358)
T KOG3606|consen 231 TLDQVTDMMVAN-SHNLIITVKPA 253 (358)
T ss_pred cHHHHHHHHhhc-ccceEEEeccc
Confidence 999999888554 46677887753
No 64
>PRK10898 serine endoprotease; Provisional
Probab=97.78 E-value=0.00014 Score=76.65 Aligned_cols=56 Identities=23% Similarity=0.406 Sum_probs=47.4
Q ss_pred EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHH--hCCCEEEEEEEeCcch
Q psy9257 453 IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAME--KGGSVLTLTLIPTSMY 510 (530)
Q Consensus 453 V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLk--rsG~tVtLtVip~~~~ 510 (530)
|..|.++++|+++||+.||+|++|||++|.++ +++.+.+. +.|+.+.|++.|....
T Consensus 283 V~~V~~~spA~~aGL~~GDvI~~Ing~~V~s~--~~l~~~l~~~~~g~~v~l~v~R~g~~ 340 (353)
T PRK10898 283 VNEVSPDGPAAKAGIQVNDLIISVNNKPAISA--LETMDQVAEIRPGSVIPVVVMRDDKQ 340 (353)
T ss_pred EEEECCCChHHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEECCEE
Confidence 88999999999999999999999999999887 35655554 5678899999987643
No 65
>KOG1892|consensus
Probab=97.75 E-value=6.2e-05 Score=86.46 Aligned_cols=80 Identities=26% Similarity=0.456 Sum_probs=66.8
Q ss_pred cceEEEeccCCCeeEEEEEec------CCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCC
Q psy9257 347 IRELVLCKDASGLIGLRVCAI------NEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVN 419 (530)
Q Consensus 347 Vr~V~L~K~s~G~LG~~V~~~------~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G~ 419 (530)
+..|.|.|. +++|+.+... ..||+|..|.+|++|+..| |+.||+++.|||..+-+++.+.+.+++. ..|.
T Consensus 934 i~~vtL~Kn--nGmGLSIVAAkGaGq~klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGisQErAA~lmt-rtg~ 1010 (1629)
T KOG1892|consen 934 IITVTLKKN--NGMGLSIVAAKGAGQRKLGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGISQERAARLMT-RTGN 1010 (1629)
T ss_pred eEEEEEecc--CCceEEEEeeccCCccccceEEEEeccCCccccccccccCceeeeecCcccccccHHHHHHHHh-ccCC
Confidence 344555665 6699998762 3789999999999999999 9999999999999999999988888884 4578
Q ss_pred eEEEEEecCC
Q psy9257 420 NIRVVIRDRP 429 (530)
Q Consensus 420 ~VtLtVrR~~ 429 (530)
.|.|.|+..+
T Consensus 1011 vV~leVaKqg 1020 (1629)
T KOG1892|consen 1011 VVHLEVAKQG 1020 (1629)
T ss_pred eEEEehhhhh
Confidence 9999997643
No 66
>TIGR01713 typeII_sec_gspC general secretion pathway protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=97.62 E-value=0.00027 Score=71.82 Aligned_cols=56 Identities=18% Similarity=0.188 Sum_probs=47.8
Q ss_pred EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHH--hCCCEEEEEEEeCcch
Q psy9257 453 IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAME--KGGSVLTLTLIPTSMY 510 (530)
Q Consensus 453 V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLk--rsG~tVtLtVip~~~~ 510 (530)
|..+.++++|+++||+.||+|++|||+++.++ +++..++. +.++.++|+|.|....
T Consensus 195 v~~v~~~s~a~~aGLr~GDvIv~ING~~i~~~--~~~~~~l~~~~~~~~v~l~V~R~G~~ 252 (259)
T TIGR01713 195 LNPGKDPSLFYKSGLQDGDIAVALNGLDLRDP--EQAFQALQMLREETNLTLTVERDGQR 252 (259)
T ss_pred EEecCCCCHHHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCeEEEEEEECCEE
Confidence 77889999999999999999999999999988 45666666 4667999999998643
No 67
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.62 E-value=0.00015 Score=59.44 Aligned_cols=54 Identities=24% Similarity=0.377 Sum_probs=45.4
Q ss_pred EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHH--hCCCEEEEEEEeCcc
Q psy9257 453 IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAME--KGGSVLTLTLIPTSM 509 (530)
Q Consensus 453 V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLk--rsG~tVtLtVip~~~ 509 (530)
|..|.++++|+. ||+.||+|++|||+.+.++ +++...+. ..++.+.+++.+...
T Consensus 12 V~~V~~~s~A~~-gL~~GD~I~~Ing~~v~~~--~~~~~~l~~~~~~~~v~l~v~r~g~ 67 (79)
T cd00986 12 VTSVVEGMPAAG-KLKAGDHIIAVDGKPFKEA--EELIDYIQSKKEGDTVKLKVKREEK 67 (79)
T ss_pred EEEECCCCchhh-CCCCCCEEEEECCEECCCH--HHHHHHHHhCCCCCEEEEEEEECCE
Confidence 788999999987 8999999999999999977 46777776 357789999987653
No 68
>KOG1892|consensus
Probab=97.62 E-value=9.4e-05 Score=85.07 Aligned_cols=78 Identities=26% Similarity=0.457 Sum_probs=67.8
Q ss_pred ceeeEEeccCCCCccceeec--cC-------c-EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhCCC
Q psy9257 430 LERTVTLHRDSSGHFGFHFN--KG-------Q-IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGGS 498 (530)
Q Consensus 430 ~e~tVtL~kd~~g~LGfs~~--~G-------v-V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrsG~ 498 (530)
+..+|+|+|. +.+|+++. .| + |++|++|++|+..| |+.||+++.|||+.+.+++.+...+++.+.|.
T Consensus 933 ei~~vtL~Kn--nGmGLSIVAAkGaGq~klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGisQErAA~lmtrtg~ 1010 (1629)
T KOG1892|consen 933 EIITVTLKKN--NGMGLSIVAAKGAGQRKLGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGISQERAARLMTRTGN 1010 (1629)
T ss_pred ceEEEEEecc--CCceEEEEeeccCCccccceEEEEeccCCccccccccccCceeeeecCcccccccHHHHHHHHhccCC
Confidence 4467888888 45888874 22 2 99999999999999 99999999999999999999999999999999
Q ss_pred EEEEEEEeCcc
Q psy9257 499 VLTLTLIPTSM 509 (530)
Q Consensus 499 tVtLtVip~~~ 509 (530)
.|+|.|..+..
T Consensus 1011 vV~leVaKqgA 1021 (1629)
T KOG1892|consen 1011 VVHLEVAKQGA 1021 (1629)
T ss_pred eEEEehhhhhh
Confidence 99999987653
No 69
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=97.59 E-value=0.0001 Score=79.21 Aligned_cols=76 Identities=25% Similarity=0.447 Sum_probs=60.2
Q ss_pred Cccceeec--c-C--cEEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHH-hCCCEEEEEEEeCcchhhhhh
Q psy9257 442 GHFGFHFN--K-G--QIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAME-KGGSVLTLTLIPTSMYQHMMK 515 (530)
Q Consensus 442 g~LGfs~~--~-G--vV~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLk-rsG~tVtLtVip~~~~e~m~k 515 (530)
+.+|..+. + + +|.++.+++||+++|+++||+|+.|||+++.++..+++...|+ +.|..|+|++.|....+.+..
T Consensus 100 ~GiG~~i~~~~~~~~~V~s~~~~~PA~kagi~~GD~I~~IdG~~~~~~~~~~av~~irG~~Gt~V~L~i~r~~~~k~~~v 179 (406)
T COG0793 100 GGIGIELQMEDIGGVKVVSPIDGSPAAKAGIKPGDVIIKIDGKSVGGVSLDEAVKLIRGKPGTKVTLTILRAGGGKPFTV 179 (406)
T ss_pred cceeEEEEEecCCCcEEEecCCCChHHHcCCCCCCEEEEECCEEccCCCHHHHHHHhCCCCCCeEEEEEEEcCCCceeEE
Confidence 34666664 2 3 2889999999999999999999999999999999777877776 788999999999743433433
Q ss_pred cc
Q psy9257 516 KM 517 (530)
Q Consensus 516 kL 517 (530)
++
T Consensus 180 ~l 181 (406)
T COG0793 180 TL 181 (406)
T ss_pred EE
Confidence 33
No 70
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=97.56 E-value=0.00015 Score=75.23 Aligned_cols=66 Identities=24% Similarity=0.474 Sum_probs=53.7
Q ss_pred ccceeecc--C--cEEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHH-hCCCEEEEEEEeCc
Q psy9257 443 HFGFHFNK--G--QIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAME-KGGSVLTLTLIPTS 508 (530)
Q Consensus 443 ~LGfs~~~--G--vV~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLk-rsG~tVtLtVip~~ 508 (530)
.+|+.+.. + .|..|.++++|+++||+.||+|++|||+++.++..+++...+. ..|..+.|++.|..
T Consensus 52 ~lG~~~~~~~~~~~V~~V~~~spA~~aGL~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g 122 (334)
T TIGR00225 52 GIGIQVGMDDGEIVIVSPFEGSPAEKAGIKPGDKIIKINGKSVAGMSLDDAVALIRGKKGTKVSLEILRAG 122 (334)
T ss_pred EEEEEEEEECCEEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHhccCCCCCEEEEEEEeCC
Confidence 46777642 2 3889999999999999999999999999999987566766665 46788999988764
No 71
>KOG3651|consensus
Probab=97.45 E-value=0.00031 Score=72.73 Aligned_cols=74 Identities=24% Similarity=0.424 Sum_probs=66.6
Q ss_pred eeeEEeccCCCCccceeeccCc-------EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEE
Q psy9257 431 ERTVTLHRDSSGHFGFHFNKGQ-------IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTL 502 (530)
Q Consensus 431 e~tVtL~kd~~g~LGfs~~~Gv-------V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtL 502 (530)
.-+|+|.|+..+-+|+++-+|. |..|..++||++.| ++.||.|+.|||..|.+.+.-++.++|+..-+.|++
T Consensus 5 ~~~v~ltKD~~nliGISIGGGapyCPClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~~~~eV~I 84 (429)
T KOG3651|consen 5 SETVELTKDEKNLIGISIGGGAPYCPCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQVSLNEVKI 84 (429)
T ss_pred cCcEEEeeccccceeEEecCCCCcCCeEEEEEeccCCchhccCccccCCeeEEecceeecCccHHHHHHHHHHhccceEE
Confidence 3467888999999999997774 99999999999999 999999999999999999989999999988888887
Q ss_pred EE
Q psy9257 503 TL 504 (530)
Q Consensus 503 tV 504 (530)
.+
T Consensus 85 hy 86 (429)
T KOG3651|consen 85 HY 86 (429)
T ss_pred Ee
Confidence 76
No 72
>KOG3571|consensus
Probab=97.42 E-value=0.00028 Score=76.97 Aligned_cols=79 Identities=20% Similarity=0.426 Sum_probs=65.4
Q ss_pred eEEEeccCCCeeEEEEEe-----cCCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCC--Ce
Q psy9257 349 ELVLCKDASGLIGLRVCA-----INEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPV--NN 420 (530)
Q Consensus 349 ~V~L~K~s~G~LG~~V~~-----~~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G--~~ 420 (530)
+|.|--.....|||++.+ ++.||+|..+.++++-++.| +.+||.||+||.....+++.++++++|+.... ..
T Consensus 252 TV~LnMe~vnfLGiSivgqsn~rgDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSNd~AVrvLREaV~~~gP 331 (626)
T KOG3571|consen 252 TVTLNMETVNFLGISIVGQSNARGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSNDQAVRVLREAVSRPGP 331 (626)
T ss_pred EEEecccccccceeEeecccCcCCCCceEEeeeccCceeeccCccCccceEEEeeecchhhcCchHHHHHHHHHhccCCC
Confidence 344433445679999998 77999999999999988888 99999999999999999999999999987543 34
Q ss_pred EEEEEec
Q psy9257 421 IRVVIRD 427 (530)
Q Consensus 421 VtLtVrR 427 (530)
++|+|..
T Consensus 332 i~ltvAk 338 (626)
T KOG3571|consen 332 IKLTVAK 338 (626)
T ss_pred eEEEEee
Confidence 7777653
No 73
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=97.42 E-value=0.00051 Score=73.20 Aligned_cols=56 Identities=29% Similarity=0.391 Sum_probs=48.4
Q ss_pred EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHH-hCCCEEEEEEEeCc
Q psy9257 453 IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAME-KGGSVLTLTLIPTS 508 (530)
Q Consensus 453 V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLk-rsG~tVtLtVip~~ 508 (530)
|..|.++|+|+++||+.||+|++|||++|.++...++...++ ..+..+.|+|.+..
T Consensus 106 V~~V~~~SPA~~aGl~~GD~Iv~InG~~v~~~~~~~~~~~l~g~~g~~v~ltv~r~g 162 (389)
T PLN00049 106 VVAPAPGGPAARAGIRPGDVILAIDGTSTEGLSLYEAADRLQGPEGSSVELTLRRGP 162 (389)
T ss_pred EEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEECC
Confidence 889999999999999999999999999999987777777776 46778888887654
No 74
>KOG1421|consensus
Probab=97.41 E-value=0.0011 Score=74.77 Aligned_cols=111 Identities=23% Similarity=0.299 Sum_probs=83.0
Q ss_pred EEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEecCCceeeEEeccCC---CCc----
Q psy9257 371 VFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDS---SGH---- 443 (530)
Q Consensus 371 V~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR~~~e~tVtL~kd~---~g~---- 443 (530)
.+|+.|.+.-. +. |..||+|+++||+-|..+++ ++.+. .+.+.|.|++.++++++..-. ...
T Consensus 773 ~~ishv~~~~~--ki-l~~gdiilsvngk~itr~~d--l~d~~------eid~~ilrdg~~~~ikipt~p~~et~r~vi~ 841 (955)
T KOG1421|consen 773 YVISHVRPLLH--KI-LGVGDIILSVNGKMITRLSD--LHDFE------EIDAVILRDGIEMEIKIPTYPEYETSRAVIW 841 (955)
T ss_pred EEEEeeccCcc--cc-cccccEEEEecCeEEeeehh--hhhhh------hhheeeeecCcEEEEEeccccccccceEEEE
Confidence 56778887653 33 89999999999999999887 44422 578888999988888875322 111
Q ss_pred cceeec--------------cCc-EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHh
Q psy9257 444 FGFHFN--------------KGQ-IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEK 495 (530)
Q Consensus 444 LGfs~~--------------~Gv-V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkr 495 (530)
.|-.++ .|+ |++...+|||.+ +|+..+.|..|||..+.++ +++...+++
T Consensus 842 ~gailq~ph~av~~q~edlp~gvyvt~rg~gspalq-~l~aa~fitavng~~t~~l--ddf~~~~~~ 905 (955)
T KOG1421|consen 842 MGAILQPPHSAVFEQVEDLPEGVYVTSRGYGSPALQ-MLRAAHFITAVNGHDTNTL--DDFYHMLLE 905 (955)
T ss_pred EeccccCchHHHHHHHhccCCceEEeecccCChhHh-hcchheeEEEecccccCcH--HHHHHHHhh
Confidence 232222 344 888899999999 9999999999999999888 467766653
No 75
>KOG3552|consensus
Probab=97.39 E-value=0.00021 Score=82.10 Aligned_cols=75 Identities=29% Similarity=0.495 Sum_probs=61.6
Q ss_pred cceEEEeccCCCeeEEEEEecCCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEE
Q psy9257 347 IRELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVI 425 (530)
Q Consensus 347 Vr~V~L~K~s~G~LG~~V~~~~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtV 425 (530)
.|.|.+.++ ..|||.+..+ ..|+|..|.+||++. | |++||+|++|||++|.+...+.+.++++.+. +.|.|+|
T Consensus 56 pr~vq~~r~--~~lGFgfvag-rPviVr~VT~GGps~--GKL~PGDQIl~vN~Epv~daprervIdlvRace-~sv~ltV 129 (1298)
T KOG3552|consen 56 PRQVQLQRN--ASLGFGFVAG-RPVIVRFVTEGGPSI--GKLQPGDQILAVNGEPVKDAPRERVIDLVRACE-SSVNLTV 129 (1298)
T ss_pred chhhhhhcc--ccccceeecC-CceEEEEecCCCCcc--ccccCCCeEEEecCcccccccHHHHHHHHHHHh-hhcceEE
Confidence 455554443 4467777755 889999999999987 5 9999999999999999999999999998864 6788888
Q ss_pred ec
Q psy9257 426 RD 427 (530)
Q Consensus 426 rR 427 (530)
.+
T Consensus 130 ~q 131 (1298)
T KOG3552|consen 130 CQ 131 (1298)
T ss_pred ec
Confidence 76
No 76
>KOG3938|consensus
Probab=97.37 E-value=0.00046 Score=70.45 Aligned_cols=93 Identities=26% Similarity=0.431 Sum_probs=75.2
Q ss_pred CCCcccee---chhcccccceEEEeccCCCeeEEEEEecCCc-EEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCH
Q psy9257 332 SSSGSGLK---KAYVTNGIRELVLCKDASGLIGLRVCAINEG-VFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNM 406 (530)
Q Consensus 332 SG~svGIg---fAi~~~~Vr~V~L~K~s~G~LG~~V~~~~~G-V~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~ 406 (530)
=|+.+|+. ||-++-..++|.+.|..+. ||+++.....| .||.++.+||.-.+.- ++.||.|-+|||+.+.++.+
T Consensus 109 lgGqigleDfiFAHvkGq~kEv~v~Kseda-lGlTITDNG~GyAFIKrIkegsvidri~~i~VGd~IEaiNge~ivG~RH 187 (334)
T KOG3938|consen 109 LGGQIGLEDFIFAHVKGQAKEVEVVKSEDA-LGLTITDNGAGYAFIKRIKEGSVIDRIEAICVGDHIEAINGESIVGKRH 187 (334)
T ss_pred hcCccChhhhhhhhhcCcceeEEEEecccc-cceEEeeCCcceeeeEeecCCchhhhhhheeHHhHHHhhcCccccchhH
Confidence 35556664 6778888889999998766 99999975544 7999999999988766 89999999999999999999
Q ss_pred HHHHHHHHhCC-CCeEEEEE
Q psy9257 407 KQVHKILKAAP-VNNIRVVI 425 (530)
Q Consensus 407 ~~v~~LLk~a~-G~~VtLtV 425 (530)
-++.++|+... +...+|.+
T Consensus 188 YeVArmLKel~rge~ftlrL 207 (334)
T KOG3938|consen 188 YEVARMLKELPRGETFTLRL 207 (334)
T ss_pred HHHHHHHHhcccCCeeEEEe
Confidence 99999998754 34444443
No 77
>KOG3129|consensus
Probab=97.36 E-value=0.00074 Score=66.91 Aligned_cols=79 Identities=20% Similarity=0.312 Sum_probs=61.3
Q ss_pred cEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCH-HHHHHHHHhCCCCeEEEEEecCCceeeEEeccC---CCCccc
Q psy9257 370 GVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNM-KQVHKILKAAPVNNIRVVIRDRPLERTVTLHRD---SSGHFG 445 (530)
Q Consensus 370 GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~-~~v~~LLk~a~G~~VtLtVrR~~~e~tVtL~kd---~~g~LG 445 (530)
=++|..|.++|||+++||+.||.|+++....-.++.. ..+..+.+...+..+.++|.|.++...+.|.+. ..|.||
T Consensus 140 Fa~V~sV~~~SPA~~aGl~~gD~il~fGnV~sgn~~~lq~i~~~v~~~e~~~v~v~v~R~g~~v~L~ltP~~W~GrGLLG 219 (231)
T KOG3129|consen 140 FAVVDSVVPGSPADEAGLCVGDEILKFGNVHSGNFLPLQNIAAVVQSNEDQIVSVTVIREGQKVVLSLTPKKWQGRGLLG 219 (231)
T ss_pred eEEEeecCCCChhhhhCcccCceEEEecccccccchhHHHHHHHHHhccCcceeEEEecCCCEEEEEeCcccccCCccee
Confidence 3789999999999999999999999998877766653 223344455567889999999999999888764 345566
Q ss_pred eee
Q psy9257 446 FHF 448 (530)
Q Consensus 446 fs~ 448 (530)
+.+
T Consensus 220 C~~ 222 (231)
T KOG3129|consen 220 CNY 222 (231)
T ss_pred eee
Confidence 663
No 78
>KOG3542|consensus
Probab=97.33 E-value=0.0002 Score=80.19 Aligned_cols=84 Identities=27% Similarity=0.452 Sum_probs=68.9
Q ss_pred cccccceEEEec-cCCCeeEEEEEecC---CcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCC
Q psy9257 343 VTNGIRELVLCK-DASGLIGLRVCAIN---EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPV 418 (530)
Q Consensus 343 ~~~~Vr~V~L~K-~s~G~LG~~V~~~~---~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G 418 (530)
.+..-|+|++.| .....|-|++.++. .|+||..|.+|+.|++.||+.||+|++|||+....++..++.++|++.
T Consensus 532 aKAK~RqviLtk~sre~pl~f~L~GGsEkGfgifV~~V~pgskAa~~GlKRgDqilEVNgQnfenis~~KA~eiLrnn-- 609 (1283)
T KOG3542|consen 532 AKAKPRQVILTKASREDPLMFRLVGGSEKGFGIFVAEVFPGSKAAREGLKRGDQILEVNGQNFENISAKKAEEILRNN-- 609 (1283)
T ss_pred hcccceeEEEecccccCCceeEeccCccccceeEEeeecCCchHHHhhhhhhhhhhhccccchhhhhHHHHHHHhcCC--
Confidence 355567888877 44456888887653 689999999999999999999999999999999999999999999764
Q ss_pred CeEEEEEecC
Q psy9257 419 NNIRVVIRDR 428 (530)
Q Consensus 419 ~~VtLtVrR~ 428 (530)
..++|+|..+
T Consensus 610 thLtltvKtN 619 (1283)
T KOG3542|consen 610 THLTLTVKTN 619 (1283)
T ss_pred ceEEEEEecc
Confidence 4566666643
No 79
>KOG1320|consensus
Probab=97.28 E-value=0.0019 Score=70.72 Aligned_cols=135 Identities=19% Similarity=0.278 Sum_probs=84.2
Q ss_pred CcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHH-----HHH-HhCCCCeEEEEEecCCceeeEEeccCCC-
Q psy9257 369 EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVH-----KIL-KAAPVNNIRVVIRDRPLERTVTLHRDSS- 441 (530)
Q Consensus 369 ~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~-----~LL-k~a~G~~VtLtVrR~~~e~tVtL~kd~~- 441 (530)
.|+.+..+.+-+.|.+. ++.||.|+.+||+.|.-... ... ..+ .+.+++.|.+.|.|.. ++.+.+.....
T Consensus 287 ~g~~i~~~~qtd~ai~~-~nsg~~ll~~DG~~IgVn~~-~~~ri~~~~~iSf~~p~d~vl~~v~r~~-e~~~~lr~~~~~ 363 (473)
T KOG1320|consen 287 TGVLISKINQTDAAINP-GNSGGPLLNLDGEVIGVNTR-KVTRIGFSHGISFKIPIDTVLVIVLRLG-EFQISLRPVKPL 363 (473)
T ss_pred cceeeeeecccchhhhc-ccCCCcEEEecCcEeeeeee-eeEEeeccccceeccCchHhhhhhhhhh-hhceeeccccCc
Confidence 45888888887777664 88999999999999841111 011 001 1223444555555543 33333321100
Q ss_pred ----Ccc---------ceee---------cc----Cc-EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHH
Q psy9257 442 ----GHF---------GFHF---------NK----GQ-IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAME 494 (530)
Q Consensus 442 ----g~L---------Gfs~---------~~----Gv-V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLk 494 (530)
..+ ||.+ .. ++ |..|.+++++...+++.||+|+.|||+.|.+++ ++..+++
T Consensus 364 ~p~~~~~g~~s~~i~~g~vf~~~~~~~~~~~~~~q~v~is~Vlp~~~~~~~~~~~g~~V~~vng~~V~n~~--~l~~~i~ 441 (473)
T KOG1320|consen 364 VPVHQYIGLPSYYIFAGLVFVPLTKSYIFPSGVVQLVLVSQVLPGSINGGYGLKPGDQVVKVNGKPVKNLK--HLYELIE 441 (473)
T ss_pred ccccccCCceeEEEecceEEeecCCCccccccceeEEEEEEeccCCCcccccccCCCEEEEECCEEeechH--HHHHHHH
Confidence 001 1111 11 22 668999999999999999999999999999994 6888888
Q ss_pred hCCC--EEEEEEEeCc
Q psy9257 495 KGGS--VLTLTLIPTS 508 (530)
Q Consensus 495 rsG~--tVtLtVip~~ 508 (530)
.+-. .+.+...+..
T Consensus 442 ~~~~~~~v~vl~~~~~ 457 (473)
T KOG1320|consen 442 ECSTEDKVAVLDRRSA 457 (473)
T ss_pred hcCcCceEEEEEecCc
Confidence 6543 5555555443
No 80
>KOG3553|consensus
Probab=97.25 E-value=0.00036 Score=62.16 Aligned_cols=43 Identities=23% Similarity=0.398 Sum_probs=39.1
Q ss_pred EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHh
Q psy9257 453 IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEK 495 (530)
Q Consensus 453 V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkr 495 (530)
|++|..||||+.+||+.+|.|++|||.+..-++++..+..|++
T Consensus 63 vT~V~eGsPA~~AGLrihDKIlQvNG~DfTMvTHd~Avk~i~k 105 (124)
T KOG3553|consen 63 VTRVSEGSPAEIAGLRIHDKILQVNGWDFTMVTHDQAVKRITK 105 (124)
T ss_pred EEEeccCChhhhhcceecceEEEecCceeEEEEhHHHHHHhhH
Confidence 9999999999999999999999999999888888777777765
No 81
>KOG3542|consensus
Probab=97.05 E-value=0.0018 Score=72.94 Aligned_cols=79 Identities=30% Similarity=0.428 Sum_probs=59.8
Q ss_pred CCceeeEEecc-CCCCccceeeccCc-------EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCE
Q psy9257 428 RPLERTVTLHR-DSSGHFGFHFNKGQ-------IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSV 499 (530)
Q Consensus 428 ~~~e~tVtL~k-d~~g~LGfs~~~Gv-------V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~t 499 (530)
+.+.+.+.|.+ .....+-|.+.+|. |.+|.+|+.|++.||+.||+|++|||++..+++.+...++|+ +...
T Consensus 533 KAK~RqviLtk~sre~pl~f~L~GGsEkGfgifV~~V~pgskAa~~GlKRgDqilEVNgQnfenis~~KA~eiLr-nnth 611 (1283)
T KOG3542|consen 533 KAKPRQVILTKASREDPLMFRLVGGSEKGFGIFVAEVFPGSKAAREGLKRGDQILEVNGQNFENISAKKAEEILR-NNTH 611 (1283)
T ss_pred cccceeEEEecccccCCceeEeccCccccceeEEeeecCCchHHHhhhhhhhhhhhccccchhhhhHHHHHHHhc-CCce
Confidence 34556677766 33344666665542 889999999999999999999999999999998666666554 4578
Q ss_pred EEEEEEeC
Q psy9257 500 LTLTLIPT 507 (530)
Q Consensus 500 VtLtVip~ 507 (530)
++|+|..+
T Consensus 612 LtltvKtN 619 (1283)
T KOG3542|consen 612 LTLTVKTN 619 (1283)
T ss_pred EEEEEecc
Confidence 88888655
No 82
>KOG3552|consensus
Probab=96.91 E-value=0.001 Score=76.76 Aligned_cols=74 Identities=24% Similarity=0.402 Sum_probs=61.0
Q ss_pred eeeEEeccCCCCccceeeccCc---EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEEEEeC
Q psy9257 431 ERTVTLHRDSSGHFGFHFNKGQ---IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPT 507 (530)
Q Consensus 431 e~tVtL~kd~~g~LGfs~~~Gv---V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLtVip~ 507 (530)
.+.|.+.++. .|||.|..|+ |..|..||++. ..|++||+|+.|||.+|.+...+.+.++++.+...|.|+|+..
T Consensus 56 pr~vq~~r~~--~lGFgfvagrPviVr~VT~GGps~-GKL~PGDQIl~vN~Epv~daprervIdlvRace~sv~ltV~qP 132 (1298)
T KOG3552|consen 56 PRQVQLQRNA--SLGFGFVAGRPVIVRFVTEGGPSI-GKLQPGDQILAVNGEPVKDAPRERVIDLVRACESSVNLTVCQP 132 (1298)
T ss_pred chhhhhhccc--cccceeecCCceEEEEecCCCCcc-ccccCCCeEEEecCcccccccHHHHHHHHHHHhhhcceEEecc
Confidence 4555555554 3677776665 77888999886 3399999999999999999999999999999999999999875
No 83
>KOG3606|consensus
Probab=96.90 E-value=0.0017 Score=66.60 Aligned_cols=58 Identities=33% Similarity=0.444 Sum_probs=52.5
Q ss_pred EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEEEEeCcch
Q psy9257 453 IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPTSMY 510 (530)
Q Consensus 453 V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLtVip~~~~ 510 (530)
|..+++|+-|+-.| |-+.|.|++|||..|.+.+-+++.+++......+.++|.|-..+
T Consensus 198 ISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKTLDQVTDMMvANshNLIiTVkPANQR 256 (358)
T KOG3606|consen 198 ISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDMMVANSHNLIITVKPANQR 256 (358)
T ss_pred EEeecCCccccccceeeecceeEEEcCEEeccccHHHHHHHHhhcccceEEEecccccc
Confidence 88999999999999 56899999999999999999999999998888899999876654
No 84
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.
Probab=96.88 E-value=0.0082 Score=55.93 Aligned_cols=79 Identities=22% Similarity=0.364 Sum_probs=52.9
Q ss_pred CCceeeEEecc----CCCCccceeec----c-----C-cEEEEccCCHHHHcCCCC-CCEEEEEcCeecCCCChHHHHHH
Q psy9257 428 RPLERTVTLHR----DSSGHFGFHFN----K-----G-QIVSLVKDSSAARNGLLV-NHNILEVNGANVVGLKDKELLEA 492 (530)
Q Consensus 428 ~~~e~tVtL~k----d~~g~LGfs~~----~-----G-vV~sVv~gSpAarAGLr~-GDrILeVNGq~V~gls~eeVv~i 492 (530)
....|++.+.. +..+.||++++ . + .|..|.++|||+++||++ .|.|+.+++..+.+. +++...
T Consensus 8 ~~~~R~v~i~ps~~w~~~g~LG~sv~~~~~~~~~~~~~~Vl~V~p~SPA~~AGL~p~~DyIig~~~~~l~~~--~~l~~~ 85 (138)
T PF04495_consen 8 GQTTREVSIVPSKKWGGQGLLGISVRFESFEGAEEEGWHVLRVAPNSPAAKAGLEPFFDYIIGIDGGLLDDE--DDLFEL 85 (138)
T ss_dssp TSSEEEEEE---SSSSSSSSS-EEEEEEE-TTGCCCEEEEEEE-TTSHHHHTT--TTTEEEEEETTCE--ST--CHHHHH
T ss_pred CCeEEEEEEccCcccCCCCCCcEEEEEecccccccceEEEeEecCCCHHHHCCccccccEEEEccceecCCH--HHHHHH
Confidence 34556666644 23577899875 1 1 299999999999999998 699999999888865 567777
Q ss_pred HH-hCCCEEEEEEEeCc
Q psy9257 493 ME-KGGSVLTLTLIPTS 508 (530)
Q Consensus 493 Lk-rsG~tVtLtVip~~ 508 (530)
++ ..++.+.|.|....
T Consensus 86 v~~~~~~~l~L~Vyns~ 102 (138)
T PF04495_consen 86 VEANENKPLQLYVYNSK 102 (138)
T ss_dssp HHHTTTS-EEEEEEETT
T ss_pred HHHcCCCcEEEEEEECC
Confidence 76 56788999987654
No 85
>KOG0609|consensus
Probab=96.86 E-value=0.0022 Score=70.67 Aligned_cols=78 Identities=27% Similarity=0.447 Sum_probs=65.8
Q ss_pred eeEEeccCCCCccceeecc--C---cEEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEEEE
Q psy9257 432 RTVTLHRDSSGHFGFHFNK--G---QIVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLI 505 (530)
Q Consensus 432 ~tVtL~kd~~g~LGfs~~~--G---vV~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLtVi 505 (530)
+.+.+.|+....+|..++. + .|..|..|+.+++.| |..||.|++|||+.|.+..-+++..+++.+.+.+++.|+
T Consensus 124 riv~i~k~~~eplG~Tik~~e~~~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~~~G~itfkii 203 (542)
T KOG0609|consen 124 RIVRIVKNTGEPLGATIRVEEDTKVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQELLRNSRGSITFKII 203 (542)
T ss_pred EEEEEeecCCCccceEEEeccCCccEEeeeccCCcchhccceeeccchheecCeecccCCHHHHHHHHHhCCCcEEEEEc
Confidence 3455666666677777763 2 288999999999999 889999999999999999999999999988899999999
Q ss_pred eCcc
Q psy9257 506 PTSM 509 (530)
Q Consensus 506 p~~~ 509 (530)
+...
T Consensus 204 P~~~ 207 (542)
T KOG0609|consen 204 PSYR 207 (542)
T ss_pred cccc
Confidence 8854
No 86
>PRK09681 putative type II secretion protein GspC; Provisional
Probab=96.86 E-value=0.0055 Score=63.19 Aligned_cols=53 Identities=9% Similarity=0.301 Sum_probs=42.4
Q ss_pred hhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhC-CCCeEEEEEecCCceeeEEe
Q psy9257 382 ASLVGLRFGDQILSINGETVAGYNMKQVHKILKAA-PVNNIRVVIRDRPLERTVTL 436 (530)
Q Consensus 382 AakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a-~G~~VtLtVrR~~~e~tVtL 436 (530)
-.++|||.||++++|||..+.+... +.++++.. ....++|+|.|+++..++.+
T Consensus 220 F~~~GLq~GDva~sING~dL~D~~q--a~~l~~~L~~~tei~ltVeRdGq~~~i~i 273 (276)
T PRK09681 220 FDASGFKEGDIAIALNQQDFTDPRA--MIALMRQLPSMDSIQLTVLRKGARHDISI 273 (276)
T ss_pred HHHcCCCCCCEEEEeCCeeCCCHHH--HHHHHHHhccCCeEEEEEEECCEEEEEEE
Confidence 3668999999999999999987544 55555533 34789999999999888765
No 87
>KOG3938|consensus
Probab=96.81 E-value=0.0018 Score=66.30 Aligned_cols=120 Identities=19% Similarity=0.310 Sum_probs=87.3
Q ss_pred CHhhhcCCCCCCEEE-EECCEEcCCcCHHHHHHHHHhCCCCeEEEEEecCCceeeEEeccCCCCccceeec-cCc----E
Q psy9257 380 SPASLVGLRFGDQIL-SINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSSGHFGFHFN-KGQ----I 453 (530)
Q Consensus 380 SPAakAGLq~GDqIL-aING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR~~~e~tVtL~kd~~g~LGfs~~-~Gv----V 453 (530)
+.|+.-++..-|+|. .+|...+. +.++|...-+-.=.+...++++..+|.+.|+... ||+++. +|. |
T Consensus 81 kIAe~F~Is~~dIlfcTlNshKvD------M~~llgGqigleDfiFAHvkGq~kEv~v~Kseda-lGlTITDNG~GyAFI 153 (334)
T KOG3938|consen 81 KIAEAFDISPDDILFCTLNSHKVD------MKRLLGGQIGLEDFIFAHVKGQAKEVEVVKSEDA-LGLTITDNGAGYAFI 153 (334)
T ss_pred HHHHHhcCCccceEEEecCCCccc------HHHHhcCccChhhhhhhhhcCcceeEEEEecccc-cceEEeeCCcceeee
Confidence 556666788888874 45666652 3555533222111222334667778888887655 888886 333 9
Q ss_pred EEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHH--hCCCEEEEEEEe
Q psy9257 454 VSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAME--KGGSVLTLTLIP 506 (530)
Q Consensus 454 ~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLk--rsG~tVtLtVip 506 (530)
+.|..||.-++.. +.+||.|-+|||+++.++.+=+|.++|+ +.|++.+|.++-
T Consensus 154 KrIkegsvidri~~i~VGd~IEaiNge~ivG~RHYeVArmLKel~rge~ftlrLie 209 (334)
T KOG3938|consen 154 KRIKEGSVIDRIEAICVGDHIEAINGESIVGKRHYEVARMLKELPRGETFTLRLIE 209 (334)
T ss_pred EeecCCchhhhhhheeHHhHHHhhcCccccchhHHHHHHHHHhcccCCeeEEEeec
Confidence 9999999988875 8899999999999999999999999998 567888887753
No 88
>PRK11186 carboxy-terminal protease; Provisional
Probab=96.79 E-value=0.0027 Score=72.45 Aligned_cols=65 Identities=28% Similarity=0.476 Sum_probs=51.9
Q ss_pred ccceeec--cC--cEEEEccCCHHHHc-CCCCCCEEEEEc--C---eecCCCChHHHHHHHH-hCCCEEEEEEEeC
Q psy9257 443 HFGFHFN--KG--QIVSLVKDSSAARN-GLLVNHNILEVN--G---ANVVGLKDKELLEAME-KGGSVLTLTLIPT 507 (530)
Q Consensus 443 ~LGfs~~--~G--vV~sVv~gSpAarA-GLr~GDrILeVN--G---q~V~gls~eeVv~iLk-rsG~tVtLtVip~ 507 (530)
.+|..+. ++ +|.+|.+||||+++ ||+.||+|++|| | +.+.+|..+++..+|+ ..|..|+|+|.+.
T Consensus 245 GIGa~l~~~~~~~~V~~vipGsPA~ka~gLk~GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG~~Gt~V~LtV~r~ 320 (667)
T PRK11186 245 GIGAVLQMDDDYTVINSLVAGGPAAKSKKLSVGDKIVGVGQDGKPIVDVIGWRLDDVVALIKGPKGSKVRLEILPA 320 (667)
T ss_pred EEEEEEEEeCCeEEEEEccCCChHHHhCCCCCCCEEEEECCCCCcccccccCCHHHHHHHhcCCCCCEEEEEEEeC
Confidence 3666654 23 38899999999998 899999999999 4 3566777778888887 5788999999873
No 89
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.0086 Score=62.35 Aligned_cols=68 Identities=25% Similarity=0.458 Sum_probs=53.3
Q ss_pred cceeeccCc-EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHH--hCCCEEEEEEEeCcchhhh
Q psy9257 444 FGFHFNKGQ-IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAME--KGGSVLTLTLIPTSMYQHM 513 (530)
Q Consensus 444 LGfs~~~Gv-V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLk--rsG~tVtLtVip~~~~e~m 513 (530)
+|+....|. |..+.++++|+++|++.||.|+++||+.+.+.. ++...+. +.|..+.+++.|......+
T Consensus 264 ~g~~~~~G~~V~~v~~~spa~~agi~~Gdii~~vng~~v~~~~--~l~~~v~~~~~g~~v~~~~~r~g~~~~~ 334 (347)
T COG0265 264 LGLPVAAGAVVLGVLPGSPAAKAGIKAGDIITAVNGKPVASLS--DLVAAVASNRPGDEVALKLLRGGKEREL 334 (347)
T ss_pred cCCCCCCceEEEecCCCChHHHcCCCCCCEEEEECCEEccCHH--HHHHHHhccCCCCEEEEEEEECCEEEEE
Confidence 566655564 889999999999999999999999999999884 4444443 4678999999988544333
No 90
>KOG3571|consensus
Probab=96.76 E-value=0.0026 Score=69.71 Aligned_cols=77 Identities=21% Similarity=0.318 Sum_probs=62.9
Q ss_pred eeeEEeccCCCCccceeecc--------Cc-EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHh---CC
Q psy9257 431 ERTVTLHRDSSGHFGFHFNK--------GQ-IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEK---GG 497 (530)
Q Consensus 431 e~tVtL~kd~~g~LGfs~~~--------Gv-V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkr---sG 497 (530)
..+|+|.-+....||+++++ |. |.+|.++++.+..| +.+||.||+||.+++.+++.++.++.|+. ..
T Consensus 250 IITV~LnMe~vnfLGiSivgqsn~rgDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSNd~AVrvLREaV~~~ 329 (626)
T KOG3571|consen 250 IITVTLNMETVNFLGISIVGQSNARGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSNDQAVRVLREAVSRP 329 (626)
T ss_pred EEEEEecccccccceeEeecccCcCCCCceEEeeeccCceeeccCccCccceEEEeeecchhhcCchHHHHHHHHHhccC
Confidence 35667777777779999974 33 99999999999998 99999999999999999999999888873 33
Q ss_pred CEEEEEEEeC
Q psy9257 498 SVLTLTLIPT 507 (530)
Q Consensus 498 ~tVtLtVip~ 507 (530)
..++|+|...
T Consensus 330 gPi~ltvAk~ 339 (626)
T KOG3571|consen 330 GPIKLTVAKC 339 (626)
T ss_pred CCeEEEEeec
Confidence 4578877543
No 91
>KOG4407|consensus
Probab=96.74 E-value=0.0014 Score=77.75 Aligned_cols=107 Identities=17% Similarity=0.149 Sum_probs=88.3
Q ss_pred cEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEecCCceeeEEeccCCCCccceeec
Q psy9257 370 GVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSSGHFGFHFN 449 (530)
Q Consensus 370 GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR~~~e~tVtL~kd~~g~LGfs~~ 449 (530)
.+++..+..++++..+|+..||.|..|+|..+.+.+. +.-.+++.. .. .
T Consensus 97 s~~~~Q~~s~~~~~nsG~~s~~~v~~itG~e~~~~TS-~~~~~vk~~-eT---------------------------~-- 145 (1973)
T KOG4407|consen 97 STNWPQEASSAAGSNSGSSSSVGVAGITGLEPTSPTS-LPPYQVKAM-ET---------------------------I-- 145 (1973)
T ss_pred ccccchhcccCcccccCcccccceeeecccccCCCcc-ccHHHHhhh-hh---------------------------h--
Confidence 3667778888999999999999999999999988763 444444331 11 1
Q ss_pred cCcEEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEEEEeCcc
Q psy9257 450 KGQIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPTSM 509 (530)
Q Consensus 450 ~GvV~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLtVip~~~ 509 (530)
.|.+|.+.++|..+.|+.||+++.||.+.+.++...+++-.+++.--++++.|.|...
T Consensus 146 --~~~eV~~n~~~~~a~LQ~~~~V~~v~~q~~A~i~~s~~~S~~~qt~~~~~~~~~P~~~ 203 (1973)
T KOG4407|consen 146 --FIKEVQANGPAHYANLQTGDRVLMVNNQPIAGIAYSTIVSMIKQTPAVLTLHVVPKEC 203 (1973)
T ss_pred --hhhhhccCChhHHHhhhccceeEEeecCcccchhhhhhhhhhccCCCCCCceeccccC
Confidence 1567889999999999999999999999999999999999999988889998887653
No 92
>KOG4371|consensus
Probab=96.71 E-value=0.0027 Score=74.13 Aligned_cols=135 Identities=23% Similarity=0.430 Sum_probs=91.9
Q ss_pred CeeEEEEEecCCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEecCCce------
Q psy9257 358 GLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLE------ 431 (530)
Q Consensus 358 G~LG~~V~~~~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR~~~e------ 431 (530)
|.||..+......+.+....-.+.--.-.|+.||.++.+||..+.+.-+..++.+++ ..++.|.|-|.|.+-.
T Consensus 1158 ~~l~~~~a~~~~~~~~~~~~~~~~~~~pd~~~g~~l~~~n~i~~~~~~~~~~~~~~~-~~~~~~~~~~~r~~~~~~d~~~ 1236 (1332)
T KOG4371|consen 1158 GSLGVQIASLSGRVCIKQLTSEPAISHPDIRVGDVLLYVNGIAVEGKVHQEVVAMLR-GGGDRVVLGVQRPPPAYSDQHH 1236 (1332)
T ss_pred CCCCceeccCccceehhhcccCCCCCCCCcchhhhhhhccceeeechhhHHHHHHHh-ccCceEEEEeecCCcccccchh
Confidence 557777765545455555543333334459999999999999998877766666664 4578899999884321
Q ss_pred ----------eeEEeccCCCCccceeec-----cCc-EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHH
Q psy9257 432 ----------RTVTLHRDSSGHFGFHFN-----KGQ-IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAM 493 (530)
Q Consensus 432 ----------~tVtL~kd~~g~LGfs~~-----~Gv-V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iL 493 (530)
..+.|.++....+|+.+. +|. |..+..++.|.-.| +++||++...+|+++.+..-..+...+
T Consensus 1237 ~s~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~a~~~~~~r~g~~~~~~~~~~~~~~~p~~~l~~~ 1315 (1332)
T KOG4371|consen 1237 ASSTSASAPLISVMLLKKPMATLGLSLAKRTMSDGIFIRNIAQDSAASSEGTLRVGDRLVSLDGEPVDGFTPATILEKL 1315 (1332)
T ss_pred hhhhcccchhhhheeeecccccccccccccCcCCceeeecccccccccccccccccceeeccCCccCCCCChHHHHHHh
Confidence 223344555556787764 444 55666666666666 999999999999999999644443333
No 93
>KOG3605|consensus
Probab=96.68 E-value=0.003 Score=70.97 Aligned_cols=75 Identities=23% Similarity=0.450 Sum_probs=57.5
Q ss_pred eeEEeccCCCCccceeec-cC--------cEEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHh--CCCE
Q psy9257 432 RTVTLHRDSSGHFGFHFN-KG--------QIVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEK--GGSV 499 (530)
Q Consensus 432 ~tVtL~kd~~g~LGfs~~-~G--------vV~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkr--sG~t 499 (530)
++|.|.|....-||+.+. .| +|.+...+++|++.| |-.||+|+.|||..+.++.-...+-+|+. ....
T Consensus 647 KEVvv~K~kGEiLGVViVESGWGSmLPTVViAnmm~~GpAarsgkLnIGDQiiaING~SLVGLPLstcQs~Ik~~KnQT~ 726 (829)
T KOG3605|consen 647 KEVVLEKHKGEILGVVIVESGWGSILPTVVIANMMHGGPAARSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQTA 726 (829)
T ss_pred ceeeeecccCceeeEEEEecCccccchHHHHHhcccCChhhhcCCccccceeEeecCceeccccHHHHHHHHhcccccce
Confidence 455566655566777664 23 277899999999999 99999999999999999987777888873 4456
Q ss_pred EEEEEEe
Q psy9257 500 LTLTLIP 506 (530)
Q Consensus 500 VtLtVip 506 (530)
|+|+|++
T Consensus 727 VkltiV~ 733 (829)
T KOG3605|consen 727 VKLNIVS 733 (829)
T ss_pred EEEEEec
Confidence 7776654
No 94
>TIGR02860 spore_IV_B stage IV sporulation protein B. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.
Probab=96.32 E-value=0.012 Score=63.57 Aligned_cols=49 Identities=29% Similarity=0.530 Sum_probs=41.3
Q ss_pred CCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHh-CCCEEEEEEEeCcc
Q psy9257 459 DSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEK-GGSVLTLTLIPTSM 509 (530)
Q Consensus 459 gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkr-sG~tVtLtVip~~~ 509 (530)
+++|+++||+.||+|++|||+++.++ +++..++++ .++.+.|++.|...
T Consensus 123 ~SPAa~AGLq~GDiIvsING~~V~s~--~DL~~iL~~~~g~~V~LtV~R~Ge 172 (402)
T TIGR02860 123 HSPGEEAGIQIGDRILKINGEKIKNM--DDLANLINKAGGEKLTLTIERGGK 172 (402)
T ss_pred CCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHhCCCCeEEEEEEECCE
Confidence 58999999999999999999999988 567777774 46788888887653
No 95
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=96.31 E-value=0.0058 Score=66.45 Aligned_cols=49 Identities=18% Similarity=0.234 Sum_probs=39.4
Q ss_pred EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEEEE
Q psy9257 453 IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLI 505 (530)
Q Consensus 453 V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLtVi 505 (530)
|..|.++|+|+++||+.||+|++|||+.+.+|. ++...+. ++.+.++|.
T Consensus 2 I~~V~pgSpAe~AGLe~GD~IlsING~~V~Dw~--D~~~~l~--~e~l~L~V~ 50 (433)
T TIGR03279 2 ISAVLPGSIAEELGFEPGDALVSINGVAPRDLI--DYQFLCA--DEELELEVL 50 (433)
T ss_pred cCCcCCCCHHHHcCCCCCCEEEEECCEECCCHH--HHHHHhc--CCcEEEEEE
Confidence 567899999999999999999999999999984 4555443 345666664
No 96
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=96.12 E-value=0.025 Score=49.05 Aligned_cols=55 Identities=25% Similarity=0.294 Sum_probs=37.7
Q ss_pred EEEEccC--------CHHHHcC--CCCCCEEEEEcCeecCCCChHHHHHHHH-hCCCEEEEEEEeCcc
Q psy9257 453 IVSLVKD--------SSAARNG--LLVNHNILEVNGANVVGLKDKELLEAME-KGGSVLTLTLIPTSM 509 (530)
Q Consensus 453 V~sVv~g--------SpAarAG--Lr~GDrILeVNGq~V~gls~eeVv~iLk-rsG~tVtLtVip~~~ 509 (530)
|..|..+ ||-.+.| ++.||.|++|||+++..-. .+..+|. ++|+.+.|+|.+...
T Consensus 16 I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~~~~--~~~~lL~~~agk~V~Ltv~~~~~ 81 (88)
T PF14685_consen 16 IARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPVTADA--NPYRLLEGKAGKQVLLTVNRKPG 81 (88)
T ss_dssp EEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE-BTTB---HHHHHHTTTTSEEEEEEE-STT
T ss_pred EEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEECCCCC--CHHHHhcccCCCEEEEEEecCCC
Confidence 7777765 6677777 6699999999999998764 4666665 788999999987653
No 97
>KOG0606|consensus
Probab=95.95 E-value=0.016 Score=68.64 Aligned_cols=55 Identities=35% Similarity=0.436 Sum_probs=51.9
Q ss_pred EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEEEEeC
Q psy9257 453 IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPT 507 (530)
Q Consensus 453 V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLtVip~ 507 (530)
|.+|..+++|..+||+.||.|+.|||..|.++.+.+|++++.+.|..+.+.+.+-
T Consensus 662 v~sv~egsPA~~agls~~DlIthvnge~v~gl~H~ev~~Lll~~gn~v~~~ttpl 716 (1205)
T KOG0606|consen 662 VGSVEEGSPAFEAGLSAGDLITHVNGEPVHGLVHTEVMELLLKSGNKVTLRTTPL 716 (1205)
T ss_pred eeeecCCCCccccCCCccceeEeccCcccchhhHHHHHHHHHhcCCeeEEEeecc
Confidence 8899999999999999999999999999999999999999999999999988654
No 98
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=95.83 E-value=0.029 Score=58.87 Aligned_cols=79 Identities=22% Similarity=0.339 Sum_probs=58.3
Q ss_pred CcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEec-CCc--eeeEEecc---CCCC
Q psy9257 369 EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRD-RPL--ERTVTLHR---DSSG 442 (530)
Q Consensus 369 ~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR-~~~--e~tVtL~k---d~~g 442 (530)
.||+|..|..++++... |+.||.|++|||+.+.+..+ ....+..+..|+.|++.++| ++. ..+++|.+ +...
T Consensus 130 ~gvyv~~v~~~~~~~gk-l~~gD~i~avdg~~f~s~~e-~i~~v~~~k~Gd~VtI~~~r~~~~~~~~~~tl~~~~~~g~~ 207 (342)
T COG3480 130 AGVYVLSVIDNSPFKGK-LEAGDTIIAVDGEPFTSSDE-LIDYVSSKKPGDEVTIDYERHNETPEIVTITLIKNDDNGKA 207 (342)
T ss_pred eeEEEEEccCCcchhce-eccCCeEEeeCCeecCCHHH-HHHHHhccCCCCeEEEEEEeccCCCceEEEEEEeeccCCcc
Confidence 68999999999988732 99999999999999988544 45556667789999999987 333 34444433 3344
Q ss_pred ccceeec
Q psy9257 443 HFGFHFN 449 (530)
Q Consensus 443 ~LGfs~~ 449 (530)
.+|+++.
T Consensus 208 giGIsl~ 214 (342)
T COG3480 208 GIGISLV 214 (342)
T ss_pred eeeeEee
Confidence 5777764
No 99
>KOG0606|consensus
Probab=95.82 E-value=0.024 Score=67.18 Aligned_cols=74 Identities=31% Similarity=0.389 Sum_probs=57.1
Q ss_pred EEEeccCCCeeEEEEEec-----CC-----cEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCC
Q psy9257 350 LVLCKDASGLIGLRVCAI-----NE-----GVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVN 419 (530)
Q Consensus 350 V~L~K~s~G~LG~~V~~~-----~~-----GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~ 419 (530)
+.+.+. ...+||+++.+ +. .-.|..|.++++|..+||+.||.|+.|||+.|.++.+.++.+++.+ .+.
T Consensus 630 I~i~~~-~~~yGft~~airVy~Gd~d~ytvhh~v~sv~egsPA~~agls~~DlIthvnge~v~gl~H~ev~~Lll~-~gn 707 (1205)
T KOG0606|consen 630 ITIHFS-GKKYGFTLRAIRVYMGDKDVYTVHHSVGSVEEGSPAFEAGLSAGDLITHVNGEPVHGLVHTEVMELLLK-SGN 707 (1205)
T ss_pred eeeecc-ccccCceeeeEEEecCCcccceeeeeeeeecCCCCccccCCCccceeEeccCcccchhhHHHHHHHHHh-cCC
Confidence 444444 34478776652 22 3678899999999999999999999999999999999999988854 356
Q ss_pred eEEEEE
Q psy9257 420 NIRVVI 425 (530)
Q Consensus 420 ~VtLtV 425 (530)
.|.+.+
T Consensus 708 ~v~~~t 713 (1205)
T KOG0606|consen 708 KVTLRT 713 (1205)
T ss_pred eeEEEe
Confidence 666554
No 100
>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]
Probab=95.42 E-value=0.046 Score=55.56 Aligned_cols=70 Identities=17% Similarity=0.259 Sum_probs=51.5
Q ss_pred CCCeeEEEEEecCCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCC-CCeEEEEEecCCceeeE
Q psy9257 356 ASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAP-VNNIRVVIRDRPLERTV 434 (530)
Q Consensus 356 s~G~LG~~V~~~~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~-G~~VtLtVrR~~~e~tV 434 (530)
..+-+|+++..+.. ++.-...|||.||..++||+..+++-.+ +.++++... -..+.|+|+|+++...|
T Consensus 203 ~eki~Gyr~~pgkd---------~slF~~sglq~GDIavaiNnldltdp~~--m~~llq~l~~m~s~qlTv~R~G~rhdI 271 (275)
T COG3031 203 NEKIEGYRFEPGKD---------GSLFYKSGLQRGDIAVAINNLDLTDPED--MFRLLQMLRNMPSLQLTVIRRGKRHDI 271 (275)
T ss_pred CCceEEEEecCCCC---------cchhhhhcCCCcceEEEecCcccCCHHH--HHHHHHhhhcCcceEEEEEecCcccee
Confidence 34557877765443 3455678999999999999999988544 666665433 36789999999888776
Q ss_pred Ee
Q psy9257 435 TL 436 (530)
Q Consensus 435 tL 436 (530)
.+
T Consensus 272 nV 273 (275)
T COG3031 272 NV 273 (275)
T ss_pred ee
Confidence 54
No 101
>KOG3532|consensus
Probab=95.30 E-value=0.043 Score=62.31 Aligned_cols=70 Identities=29% Similarity=0.342 Sum_probs=54.9
Q ss_pred eccCCCeeEEEEEec-CCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEE
Q psy9257 353 CKDASGLIGLRVCAI-NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVV 424 (530)
Q Consensus 353 ~K~s~G~LG~~V~~~-~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLt 424 (530)
++.....+|+.+... +.-|-|..|.++++|.++.|++||++++|||.+|+.. .++.+.++...++...|.
T Consensus 381 ~~~~s~~ig~vf~~~~~~~v~v~tv~~ns~a~k~~~~~gdvlvai~~~pi~s~--~q~~~~~~s~~~~~~~l~ 451 (1051)
T KOG3532|consen 381 RYDVSSPIGLVFDKNTNRAVKVCTVEDNSLADKAAFKPGDVLVAINNVPIRSE--RQATRFLQSTTGDLTVLV 451 (1051)
T ss_pred cccccCceeEEEecCCceEEEEEEecCCChhhHhcCCCcceEEEecCccchhH--HHHHHHHHhcccceEEEE
Confidence 455666789888753 3557799999999999999999999999999999874 347888877665544443
No 102
>KOG3834|consensus
Probab=94.31 E-value=0.16 Score=55.23 Aligned_cols=105 Identities=21% Similarity=0.313 Sum_probs=66.9
Q ss_pred cccceEEEeccCCCe---eEEEEEecC------CcEEEEEeccCCHhhhcCCC-CCCEEEEECCEEcCCcCHHHHHHHHH
Q psy9257 345 NGIRELVLCKDASGL---IGLRVCAIN------EGVFVCLVERGSPASLVGLR-FGDQILSINGETVAGYNMKQVHKILK 414 (530)
Q Consensus 345 ~~Vr~V~L~K~s~G~---LG~~V~~~~------~GV~Vs~V~pGSPAakAGLq-~GDqILaING~~V~g~s~~~v~~LLk 414 (530)
..+|++.+......+ ||+.|+--. .-.-|-.|.++++|++|||+ -+|.|+-+-+..... .+++..++.
T Consensus 76 ~~~R~v~I~ps~~wggqllGvsvrFcsf~~A~~~vwHvl~V~p~SPaalAgl~~~~DYivG~~~~~~~~--~eDl~~lIe 153 (462)
T KOG3834|consen 76 QEVRIVEIVPSNNWGGQLLGVSVRFCSFDGAVESVWHVLSVEPNSPAALAGLRPYTDYIVGIWDAVMHE--EEDLFTLIE 153 (462)
T ss_pred ceeEEEEecccccccccccceEEEeccCccchhheeeeeecCCCCHHHhcccccccceEecchhhhccc--hHHHHHHHH
Confidence 344555554332333 788777522 11336788999999999998 689999883333333 234667777
Q ss_pred hCCCCeEEEEEec--CCceeeEEeccC----CCCccceeeccC
Q psy9257 415 AAPVNNIRVVIRD--RPLERTVTLHRD----SSGHFGFHFNKG 451 (530)
Q Consensus 415 ~a~G~~VtLtVrR--~~~e~tVtL~kd----~~g~LGfs~~~G 451 (530)
...++.++|.|.. .+..|.|+++.. ..+.||+.+--|
T Consensus 154 she~kpLklyVYN~D~d~~ReVti~pn~awGgeg~lGCgIG~G 196 (462)
T KOG3834|consen 154 SHEGKPLKLYVYNHDTDSCREVTITPNSAWGGEGALGCGIGYG 196 (462)
T ss_pred hccCCCcceeEeecCCCccceEEeeccccccccceecccccce
Confidence 7777888888864 556778888753 344566665444
No 103
>PRK09681 putative type II secretion protein GspC; Provisional
Probab=94.00 E-value=0.17 Score=52.33 Aligned_cols=61 Identities=13% Similarity=0.227 Sum_probs=44.3
Q ss_pred ccceeeccCcEEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHH--hCCCEEEEEEEeCcch
Q psy9257 443 HFGFHFNKGQIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAME--KGGSVLTLTLIPTSMY 510 (530)
Q Consensus 443 ~LGfs~~~GvV~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLk--rsG~tVtLtVip~~~~ 510 (530)
-.|+.+..|+ ...--.++||+.||.+++|||.++.+. ++..++++ +...+++|+|.|+...
T Consensus 206 l~GYrl~Pgk-----d~~lF~~~GLq~GDva~sING~dL~D~--~qa~~l~~~L~~~tei~ltVeRdGq~ 268 (276)
T PRK09681 206 IVGYAVKPGA-----DRSLFDASGFKEGDIAIALNQQDFTDP--RAMIALMRQLPSMDSIQLTVLRKGAR 268 (276)
T ss_pred ceEEEECCCC-----cHHHHHHcCCCCCCEEEEeCCeeCCCH--HHHHHHHHHhccCCeEEEEEEECCEE
Confidence 3466654332 113456789999999999999999877 44555555 5678999999998744
No 104
>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]
Probab=93.77 E-value=0.29 Score=51.10 Aligned_cols=51 Identities=35% Similarity=0.566 Sum_probs=42.1
Q ss_pred EeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCe---EEEEEec
Q psy9257 375 LVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNN---IRVVIRD 427 (530)
Q Consensus 375 ~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~---VtLtVrR 427 (530)
.+..+++|+.+||+.||+|+++|++++.++++ +.+.+....+.. +.+.+.|
T Consensus 135 ~v~~~s~a~~a~l~~Gd~iv~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~i~~~~ 188 (375)
T COG0750 135 EVAPKSAAALAGLRPGDRIVAVDGEKVASWDD--VRRLLVAAAGDVFNLLTILVIR 188 (375)
T ss_pred ecCCCCHHHHcCCCCCCEEEeECCEEccCHHH--HHHHHHhccCCcccceEEEEEe
Confidence 78999999999999999999999999999876 555555555555 6777777
No 105
>KOG3129|consensus
Probab=93.70 E-value=0.15 Score=50.96 Aligned_cols=57 Identities=19% Similarity=0.303 Sum_probs=40.4
Q ss_pred cEEEEccCCHHHHcCCCCCCEEEEEcCeecCCCC-hHHHHHHHH-hCCCEEEEEEEeCc
Q psy9257 452 QIVSLVKDSSAARNGLLVNHNILEVNGANVVGLK-DKELLEAME-KGGSVLTLTLIPTS 508 (530)
Q Consensus 452 vV~sVv~gSpAarAGLr~GDrILeVNGq~V~gls-~eeVv~iLk-rsG~tVtLtVip~~ 508 (530)
+|.+|.++|||+++||+.||.|+.+..+.-.+.. -..+....+ ..++.+.++|+|..
T Consensus 142 ~V~sV~~~SPA~~aGl~~gD~il~fGnV~sgn~~~lq~i~~~v~~~e~~~v~v~v~R~g 200 (231)
T KOG3129|consen 142 VVDSVVPGSPADEAGLCVGDEILKFGNVHSGNFLPLQNIAAVVQSNEDQIVSVTVIREG 200 (231)
T ss_pred EEeecCCCChhhhhCcccCceEEEecccccccchhHHHHHHHHHhccCcceeEEEecCC
Confidence 3889999999999999999999999876666554 223333333 33455666666654
No 106
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=93.56 E-value=0.16 Score=56.64 Aligned_cols=39 Identities=23% Similarity=0.411 Sum_probs=33.9
Q ss_pred CCccceeecc-C---cEEEEccCCHHHHcCCCCCCEEEEEcCe
Q psy9257 441 SGHFGFHFNK-G---QIVSLVKDSSAARNGLLVNHNILEVNGA 479 (530)
Q Consensus 441 ~g~LGfs~~~-G---vV~sVv~gSpAarAGLr~GDrILeVNGq 479 (530)
...||+.+.. | +|..|..+|||.++||..||.|++|||.
T Consensus 450 ~~~LGl~v~~~~g~~~i~~V~~~gPA~~AGl~~Gd~ivai~G~ 492 (558)
T COG3975 450 AYYLGLKVKSEGGHEKITFVFPGGPAYKAGLSPGDKIVAINGI 492 (558)
T ss_pred CcccceEecccCCeeEEEecCCCChhHhccCCCccEEEEEcCc
Confidence 4468888862 2 4999999999999999999999999998
No 107
>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]
Probab=93.29 E-value=0.97 Score=46.27 Aligned_cols=62 Identities=18% Similarity=0.326 Sum_probs=46.3
Q ss_pred ccceeeccCcEEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHH--hCCCEEEEEEEeCcchh
Q psy9257 443 HFGFHFNKGQIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAME--KGGSVLTLTLIPTSMYQ 511 (530)
Q Consensus 443 ~LGfs~~~GvV~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLk--rsG~tVtLtVip~~~~e 511 (530)
-+|+.+..|+ .++.-...||+.||..+++|+.++.+- +++..+++ +.-..+.|+|.|+...+
T Consensus 206 i~Gyr~~pgk-----d~slF~~sglq~GDIavaiNnldltdp--~~m~~llq~l~~m~s~qlTv~R~G~rh 269 (275)
T COG3031 206 IEGYRFEPGK-----DGSLFYKSGLQRGDIAVAINNLDLTDP--EDMFRLLQMLRNMPSLQLTVIRRGKRH 269 (275)
T ss_pred eEEEEecCCC-----CcchhhhhcCCCcceEEEecCcccCCH--HHHHHHHHhhhcCcceEEEEEecCccc
Confidence 3677765542 445667789999999999999998765 55666665 56678999999987553
No 108
>KOG3532|consensus
Probab=92.95 E-value=0.25 Score=56.49 Aligned_cols=68 Identities=15% Similarity=0.243 Sum_probs=54.8
Q ss_pred cCCCCccceeecc-C----cEEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEEEEeC
Q psy9257 438 RDSSGHFGFHFNK-G----QIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPT 507 (530)
Q Consensus 438 kd~~g~LGfs~~~-G----vV~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLtVip~ 507 (530)
++....+|+.|.. | +|..|.++++|.++.|++||++++|||.+|... .++.+.++.-...+++.+.+.
T Consensus 382 ~~~s~~ig~vf~~~~~~~v~v~tv~~ns~a~k~~~~~gdvlvai~~~pi~s~--~q~~~~~~s~~~~~~~l~~~~ 454 (1051)
T KOG3532|consen 382 YDVSSPIGLVFDKNTNRAVKVCTVEDNSLADKAAFKPGDVLVAINNVPIRSE--RQATRFLQSTTGDLTVLVERS 454 (1051)
T ss_pred ccccCceeEEEecCCceEEEEEEecCCChhhHhcCCCcceEEEecCccchhH--HHHHHHHHhcccceEEEEeec
Confidence 4455568888863 3 278899999999999999999999999999877 578888887666777766654
No 109
>PF12812 PDZ_1: PDZ-like domain
Probab=89.95 E-value=1.4 Score=37.42 Aligned_cols=43 Identities=26% Similarity=0.349 Sum_probs=35.2
Q ss_pred CcEEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHHh
Q psy9257 451 GQIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEK 495 (530)
Q Consensus 451 GvV~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLkr 495 (530)
|++.....++++...|+..|-.|.+|||+++.++ +++.++++.
T Consensus 32 gv~v~~~~g~~~~~~~i~~g~iI~~Vn~kpt~~L--d~f~~vvk~ 74 (78)
T PF12812_consen 32 GVYVAVSGGSLAFAGGISKGFIITSVNGKPTPDL--DDFIKVVKK 74 (78)
T ss_pred EEEEEecCCChhhhCCCCCCeEEEeECCcCCcCH--HHHHHHHHh
Confidence 4466666777777777999999999999999999 578887775
No 110
>PF12812 PDZ_1: PDZ-like domain
Probab=89.59 E-value=0.86 Score=38.64 Aligned_cols=47 Identities=30% Similarity=0.316 Sum_probs=37.0
Q ss_pred CcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCC
Q psy9257 369 EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAP 417 (530)
Q Consensus 369 ~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~ 417 (530)
-|+++..+..|+++..-|+..|-.|.+|||+++.++++ ..+++++.+
T Consensus 30 ~~gv~v~~~~g~~~~~~~i~~g~iI~~Vn~kpt~~Ld~--f~~vvk~ip 76 (78)
T PF12812_consen 30 VGGVYVAVSGGSLAFAGGISKGFIITSVNGKPTPDLDD--FIKVVKKIP 76 (78)
T ss_pred CCEEEEEecCCChhhhCCCCCCeEEEeECCcCCcCHHH--HHHHHHhCC
Confidence 34555566778888877799999999999999999765 777776654
No 111
>KOG1738|consensus
Probab=88.90 E-value=0.55 Score=53.23 Aligned_cols=69 Identities=29% Similarity=0.455 Sum_probs=54.2
Q ss_pred CCeeEEEEEecCCc-EEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEe
Q psy9257 357 SGLIGLRVCAINEG-VFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIR 426 (530)
Q Consensus 357 ~G~LG~~V~~~~~G-V~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVr 426 (530)
+.++|+-+...-+| .+|..+.++++|...+ |..||.|++||+..+-+|..+-+..-++.... -|.++|.
T Consensus 212 ~eglg~~I~Ssydg~h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~~~s-gi~l~lk 282 (638)
T KOG1738|consen 212 SEGLGLYIDSSYDGPHVTSKIFEQSPADYRQKILDGDEVLQINEQTVVGWQLKVVVSSLRETPA-GIELTLK 282 (638)
T ss_pred ccCCceEEeeecCCceeccccccCChHHHhhcccCccceeeecccccccchhHhHHhhcccCcc-cceeeee
Confidence 44488888875455 6788999999999998 99999999999999999998777777766543 3444443
No 112
>KOG1738|consensus
Probab=86.96 E-value=0.72 Score=52.34 Aligned_cols=67 Identities=21% Similarity=0.347 Sum_probs=54.1
Q ss_pred Cccceeec---cCc--EEEEccCCHHHHcC-CCCCCEEEEEcCeecCCCChHHHHHHHHhCCCEEEEEEEeCc
Q psy9257 442 GHFGFHFN---KGQ--IVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPTS 508 (530)
Q Consensus 442 g~LGfs~~---~Gv--V~sVv~gSpAarAG-Lr~GDrILeVNGq~V~gls~eeVv~iLkrsG~tVtLtVip~~ 508 (530)
..+|+.+. +|. |..+..+++|++.+ +..||.|++||++.|.+|..+.++.-+.+...-|.++|....
T Consensus 213 eglg~~I~Ssydg~h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~~~sgi~l~lkKrp 285 (638)
T KOG1738|consen 213 EGLGLYIDSSYDGPHVTSKIFEQSPADYRQKILDGDEVLQINEQTVVGWQLKVVVSSLRETPAGIELTLKKRP 285 (638)
T ss_pred cCCceEEeeecCCceeccccccCChHHHhhcccCccceeeecccccccchhHhHHhhcccCcccceeeeeccC
Confidence 34777764 443 88999999999997 999999999999999999988888888877666666665443
No 113
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=82.52 E-value=1.9 Score=42.42 Aligned_cols=38 Identities=34% Similarity=0.427 Sum_probs=34.8
Q ss_pred eEEEEEecCCcEEEEEeccCCHhhhcCCCCCCEEEEEC
Q psy9257 360 IGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSIN 397 (530)
Q Consensus 360 LG~~V~~~~~GV~Vs~V~pGSPAakAGLq~GDqILaIN 397 (530)
.|+.+...+..+.|..|.-||+|+++|+..|++|++|-
T Consensus 113 ~GL~l~~e~~~~~Vd~v~fgS~A~~~g~d~d~~I~~v~ 150 (183)
T PF11874_consen 113 AGLTLMEEGGKVIVDEVEFGSPAEKAGIDFDWEITEVE 150 (183)
T ss_pred CCCEEEeeCCEEEEEecCCCCHHHHcCCCCCcEEEEEE
Confidence 68999888888999999999999999999999998764
No 114
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=80.46 E-value=3.7 Score=43.63 Aligned_cols=52 Identities=21% Similarity=0.362 Sum_probs=41.7
Q ss_pred EEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHH--hCCCEEEEEEEeC
Q psy9257 453 IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAME--KGGSVLTLTLIPT 507 (530)
Q Consensus 453 V~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLk--rsG~tVtLtVip~ 507 (530)
+..+..++++. .-|..||.|++|||+++.+. +++...++ +-|++|+++..|.
T Consensus 134 v~~v~~~~~~~-gkl~~gD~i~avdg~~f~s~--~e~i~~v~~~k~Gd~VtI~~~r~ 187 (342)
T COG3480 134 VLSVIDNSPFK-GKLEAGDTIIAVDGEPFTSS--DELIDYVSSKKPGDEVTIDYERH 187 (342)
T ss_pred EEEccCCcchh-ceeccCCeEEeeCCeecCCH--HHHHHHHhccCCCCeEEEEEEec
Confidence 66777777766 33999999999999999877 56777775 6789999999864
No 115
>KOG0307|consensus
Probab=75.97 E-value=59 Score=39.66 Aligned_cols=21 Identities=38% Similarity=0.594 Sum_probs=12.6
Q ss_pred cchhhhcccCCCccCCcCCCC
Q psy9257 165 TSSQQASQASLPYPINPLASN 185 (530)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~ 185 (530)
.+.--+...|.||..||..+.
T Consensus 829 ~~~~~~~~~S~p~~~~pv~sg 849 (1049)
T KOG0307|consen 829 YSQPPAAPPSFPYAPNPVTSG 849 (1049)
T ss_pred CCCCCCCCccCCCCCCCCCCC
Confidence 334445567778866666554
No 116
>COG5233 GRH1 Peripheral Golgi membrane protein [Intracellular trafficking and secretion]
Probab=75.96 E-value=3.9 Score=43.52 Aligned_cols=45 Identities=31% Similarity=0.378 Sum_probs=35.7
Q ss_pred CeeEEEEEecCCcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcC
Q psy9257 358 GLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVA 402 (530)
Q Consensus 358 G~LG~~V~~~~~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~ 402 (530)
-.+|+.-..++.-+-|-+|.+-++|+++|.-+||-|+-||+..+.
T Consensus 52 ~~~gi~htsVn~~l~~lrv~~~~~~e~~~~~~~dyilg~n~Dp~~ 96 (417)
T COG5233 52 TRLGIFHTSVNCLLEVLRVNPESPAEKAGMVVGDYILGINEDPLR 96 (417)
T ss_pred hhhccccchhhhhhhheeccccChhHhhccccceeEEeecCCcHH
Confidence 346765444555566888999999999999999999999987664
No 117
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=75.91 E-value=18 Score=35.76 Aligned_cols=71 Identities=20% Similarity=0.365 Sum_probs=46.8
Q ss_pred HHHHHHHHh-CCCCeEEEEEecC-----CceeeEEec--cCCC-----Cccceeec--cCc--EEEEccCCHHHHcCCCC
Q psy9257 407 KQVHKILKA-APVNNIRVVIRDR-----PLERTVTLH--RDSS-----GHFGFHFN--KGQ--IVSLVKDSSAARNGLLV 469 (530)
Q Consensus 407 ~~v~~LLk~-a~G~~VtLtVrR~-----~~e~tVtL~--kd~~-----g~LGfs~~--~Gv--V~sVv~gSpAarAGLr~ 469 (530)
.++.+.+.+ ..|+.+.+.|.+. ..++++.+. ++.. ...|+.+. +|+ |..+.-||+|+++|+..
T Consensus 63 ~~~~~~~~~~~~g~~lrl~V~G~~~~G~~~~k~v~lpl~~~~~g~eRL~~~GL~l~~e~~~~~Vd~v~fgS~A~~~g~d~ 142 (183)
T PF11874_consen 63 SELVQVAEQLPPGSSLRLRVEGPDFEGDPVTKTVLLPLGDGADGEERLEAAGLTLMEEGGKVIVDEVEFGSPAEKAGIDF 142 (183)
T ss_pred HHHHHHHhcCCCCCEEEEEEEccCCCCCceEEEEEEEcCCCCCHHHHHHhCCCEEEeeCCEEEEEecCCCCHHHHcCCCC
Confidence 344555543 3578888888762 223444443 2222 13577764 454 88999999999999999
Q ss_pred CCEEEEEc
Q psy9257 470 NHNILEVN 477 (530)
Q Consensus 470 GDrILeVN 477 (530)
|+.|.+|-
T Consensus 143 d~~I~~v~ 150 (183)
T PF11874_consen 143 DWEITEVE 150 (183)
T ss_pred CcEEEEEE
Confidence 99998874
No 118
>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]
Probab=74.73 E-value=7.3 Score=40.73 Aligned_cols=53 Identities=26% Similarity=0.391 Sum_probs=41.5
Q ss_pred cEEEEccCCHHHHcCCCCCCEEEEEcCeecCCCChHHHHHHHH-hCCCE---EEEEEEe
Q psy9257 452 QIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAME-KGGSV---LTLTLIP 506 (530)
Q Consensus 452 vV~sVv~gSpAarAGLr~GDrILeVNGq~V~gls~eeVv~iLk-rsG~t---VtLtVip 506 (530)
.+..+..++++..+|++.||+|+++|+..+.++. ++...+. ..+.. +.+.+.+
T Consensus 132 ~~~~v~~~s~a~~a~l~~Gd~iv~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~i~~~~ 188 (375)
T COG0750 132 VVGEVAPKSAAALAGLRPGDRIVAVDGEKVASWD--DVRRLLVAAAGDVFNLLTILVIR 188 (375)
T ss_pred eeeecCCCCHHHHcCCCCCCEEEeECCEEccCHH--HHHHHHHhccCCcccceEEEEEe
Confidence 3557899999999999999999999999999884 4554444 34444 6777777
No 119
>KOG2921|consensus
Probab=69.93 E-value=5.2 Score=43.76 Aligned_cols=46 Identities=35% Similarity=0.311 Sum_probs=37.5
Q ss_pred CCcEEEEEeccCCHhhh-cCCCCCCEEEEECCEEcCCcCHHHHHHHHHh
Q psy9257 368 NEGVFVCLVERGSPASL-VGLRFGDQILSINGETVAGYNMKQVHKILKA 415 (530)
Q Consensus 368 ~~GV~Vs~V~pGSPAak-AGLq~GDqILaING~~V~g~s~~~v~~LLk~ 415 (530)
+.|+.|..|...||+.- .||..||+|+++||.+|.+..+ ..+.++.
T Consensus 219 g~gV~Vtev~~~Spl~gprGL~vgdvitsldgcpV~~v~d--W~ecl~t 265 (484)
T KOG2921|consen 219 GEGVTVTEVPSVSPLFGPRGLSVGDVITSLDGCPVHKVSD--WLECLAT 265 (484)
T ss_pred CceEEEEeccccCCCcCcccCCccceEEecCCcccCCHHH--HHHHHHh
Confidence 47899999999998642 3899999999999999988655 5666655
No 120
>COG5233 GRH1 Peripheral Golgi membrane protein [Intracellular trafficking and secretion]
Probab=69.71 E-value=4.9 Score=42.84 Aligned_cols=88 Identities=18% Similarity=0.319 Sum_probs=49.5
Q ss_pred EEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEEec-CCceeeEEec-cCCCCccceeec--cC--cEEEEccCCHHHHcC
Q psy9257 393 ILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRD-RPLERTVTLH-RDSSGHFGFHFN--KG--QIVSLVKDSSAARNG 466 (530)
Q Consensus 393 ILaING~~V~g~s~~~v~~LLk~a~G~~VtLtVrR-~~~e~tVtL~-kd~~g~LGfs~~--~G--vV~sVv~gSpAarAG 466 (530)
|++-||+.+...+.......-... ..+.+.... +..+....+. +.....+|+.-. ++ .+..|...++|+++|
T Consensus 3 ~v~kN~~~~~s~~~a~t~~~s~eS--~~l~~~~i~~~t~~~sa~~es~~D~~~~gi~htsVn~~l~~lrv~~~~~~e~~~ 80 (417)
T COG5233 3 IVSKNGKAIESKDDALTMNKSWES--KALQLELIDMRTMETSALEESRKDKTRLGIFHTSVNCLLEVLRVNPESPAEKAG 80 (417)
T ss_pred cccccceehhhhhhHHHHhhcccc--cceeeEeeeCChhhhhcccccchhhhhhccccchhhhhhhheeccccChhHhhc
Confidence 566788888765443322222222 223333222 2222222221 112223555321 22 267889999999999
Q ss_pred CCCCCEEEEEcCeecC
Q psy9257 467 LLVNHNILEVNGANVV 482 (530)
Q Consensus 467 Lr~GDrILeVNGq~V~ 482 (530)
.-.||.|+.+|+.++.
T Consensus 81 ~~~~dyilg~n~Dp~~ 96 (417)
T COG5233 81 MVVGDYILGINEDPLR 96 (417)
T ss_pred cccceeEEeecCCcHH
Confidence 9999999999987765
No 121
>KOG2199|consensus
Probab=66.23 E-value=20 Score=39.36 Aligned_cols=65 Identities=29% Similarity=0.480 Sum_probs=39.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccCCC-CCCCCC-----CCCCCCCCC-CcccccCCCCCC
Q psy9257 66 PYYQHPSVPSHPSVPTFPSAPIYPSAPPQESHSPYYYSDIRANVPT-GGSPVP-----SYPQGSYPS-NPYQAQNSYPSV 138 (530)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~ 138 (530)
-|.+|+.++.-+-.+.|+-+--||..||+ |+-+|. -+||+- .+|..++|. -+||.|++|..+
T Consensus 370 ~~~~~~~l~~~~~Y~~~~p~q~yp~qpp~-----------~~q~~~q~yspp~q~~pl~~Pp~~~~~~p~~~~q~~Y~~~ 438 (462)
T KOG2199|consen 370 AYAHFAKLQGPALYPQMTPMQNYPVQPPG-----------RAQYPSQSYSPPQQQQPLQQPPNSNPATPQQQPQLSYSVT 438 (462)
T ss_pred hhccccCCCCcccCCCCCccccCCCCCCc-----------ccccCcccCCChhhcCCCCCCCccCCCCCCCCccccccCC
Confidence 34555555555555567778888888887 333333 333211 246666776 457788888777
Q ss_pred CCC
Q psy9257 139 PNQ 141 (530)
Q Consensus 139 ~~~ 141 (530)
++.
T Consensus 439 ~qs 441 (462)
T KOG2199|consen 439 PQS 441 (462)
T ss_pred CCC
Confidence 655
No 122
>KOG4371|consensus
Probab=66.20 E-value=5.4 Score=48.00 Aligned_cols=81 Identities=26% Similarity=0.519 Sum_probs=57.6
Q ss_pred ccceEEEeccCCCeeEEEEEe--cCCcEEEEEeccCCHhhhcC-CCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEE
Q psy9257 346 GIRELVLCKDASGLIGLRVCA--INEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIR 422 (530)
Q Consensus 346 ~Vr~V~L~K~s~G~LG~~V~~--~~~GV~Vs~V~pGSPAakAG-Lq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~Vt 422 (530)
.++.+++.+....++|+.+.. ...|+++..+..++.|...| ++.||+++..+|+++.++.-......++. ..+.+.
T Consensus 1245 ~l~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~a~~~~~~r~g~~~~~~~~~~~~~~~p~~~l~~~~~-v~~p~~ 1323 (1332)
T KOG4371|consen 1245 PLISVMLLKKPMATLGLSLAKRTMSDGIFIRNIAQDSAASSEGTLRVGDRLVSLDGEPVDGFTPATILEKLKL-VQGPVQ 1323 (1332)
T ss_pred hhhhheeeecccccccccccccCcCCceeeecccccccccccccccccceeeccCCccCCCCChHHHHHHhhh-ccCchh
Confidence 344566666666678887765 34789999888888887777 99999999999999999988544444432 224444
Q ss_pred EEEec
Q psy9257 423 VVIRD 427 (530)
Q Consensus 423 LtVrR 427 (530)
+++.|
T Consensus 1324 ~~~~~ 1328 (1332)
T KOG4371|consen 1324 ITVTR 1328 (1332)
T ss_pred heehh
Confidence 54443
No 123
>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion]
Probab=52.13 E-value=38 Score=37.38 Aligned_cols=127 Identities=14% Similarity=0.118 Sum_probs=72.7
Q ss_pred EEEEeccCCHhhhcCCCCCCEEEEEC-CEEcCCcCHHHHHHHHHhCCCCeEEEEEecCCceeeEEeccCCCCccceeecc
Q psy9257 372 FVCLVERGSPASLVGLRFGDQILSIN-GETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSSGHFGFHFNK 450 (530)
Q Consensus 372 ~Vs~V~pGSPAakAGLq~GDqILaIN-G~~V~g~s~~~v~~LLk~a~G~~VtLtVrR~~~e~tVtL~kd~~g~LGfs~~~ 450 (530)
.|..|.+++.++..|+..||.++.|| |..+..+... +.. +.-..+.+.+.+.++.....+.+.....|||.+..
T Consensus 4 ~i~~v~~~~~~d~~Gfe~~~~l~~Vn~~~~~~~c~~~--~~~---C~~cy~~v~~~~~~~~~~~~v~~e~~~~lg~~~e~ 78 (414)
T COG1625 4 KISKVGGISGADCDGFEEGDYLLKVNPGFGCKDCIPY--RFG---CDDCYLSVNELDTGFIPPLMVEKEPDEDLGLEFEE 78 (414)
T ss_pred ceeeccCCCcccccCccccceeeecCCCCCCCcCCCc--ccc---ccceeeEEecccCCCCCHhHhhccccccccccccc
Confidence 46788999999999999999999999 9888887661 111 11233455555554444444555555566666543
Q ss_pred --------Cc--EEEEccCCHHHHcCCC--CCC-EEEEE--cCeecCCCChHHHHHHHHhCCCEEEEEEEeC
Q psy9257 451 --------GQ--IVSLVKDSSAARNGLL--VNH-NILEV--NGANVVGLKDKELLEAMEKGGSVLTLTLIPT 507 (530)
Q Consensus 451 --------Gv--V~sVv~gSpAarAGLr--~GD-rILeV--NGq~V~gls~eeVv~iLkrsG~tVtLtVip~ 507 (530)
+. .-.+.......++.+. ..| ++.-. +|....++ ...++...=+.+.++|...
T Consensus 79 ~~~~~~~~~~d~~c~p~le~~~~r~~~~~~d~~~rL~~tsG~~~~lt~~----~~~i~~~gvdev~~SVhtT 146 (414)
T COG1625 79 VLGAKQCGNGDTFCYPDLEPRGRRARLYYKDDDIRLSFTSGSGFTLTNR----AERIIDAGVDEVYFSVHTT 146 (414)
T ss_pred ccceeecCCCCcccCcchhhhhhHHHhhcCCccceeeeeeccceeccch----HHHHHHcCCCeeEEEEeeC
Confidence 22 2222233344444422 222 23333 33333333 3346666667888888643
No 124
>KOG4407|consensus
Probab=51.84 E-value=7.6 Score=47.86 Aligned_cols=56 Identities=25% Similarity=0.526 Sum_probs=46.4
Q ss_pred CcEEEEEeccCCHhhhcCCCCCCEEEEECCEEcCCcCHHHHHHHHHhCCCCeEEEEE
Q psy9257 369 EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVI 425 (530)
Q Consensus 369 ~GV~Vs~V~pGSPAakAGLq~GDqILaING~~V~g~s~~~v~~LLk~a~G~~VtLtV 425 (530)
..+||..|+++++|..+.|++||+++.||...+.++.-..+.-++++.. ...++.|
T Consensus 143 eT~~~~eV~~n~~~~~a~LQ~~~~V~~v~~q~~A~i~~s~~~S~~~qt~-~~~~~~~ 198 (1973)
T KOG4407|consen 143 ETIFIKEVQANGPAHYANLQTGDRVLMVNNQPIAGIAYSTIVSMIKQTP-AVLTLHV 198 (1973)
T ss_pred hhhhhhhhccCChhHHHhhhccceeEEeecCcccchhhhhhhhhhccCC-CCCCcee
Confidence 6799999999999999999999999999999999988777777776654 2334443
No 125
>KOG0117|consensus
Probab=36.90 E-value=3.5e+02 Score=30.53 Aligned_cols=26 Identities=8% Similarity=0.135 Sum_probs=16.7
Q ss_pred CCcCHHHHHHHHHhCCCCeEEEEEec
Q psy9257 402 AGYNMKQVHKILKAAPVNNIRVVIRD 427 (530)
Q Consensus 402 ~g~s~~~v~~LLk~a~G~~VtLtVrR 427 (530)
.+|..+++.+.+++.....+.+.|..
T Consensus 174 K~k~keeIlee~~kVteGVvdVivy~ 199 (506)
T KOG0117|consen 174 KTKKKEEILEEMKKVTEGVVDVIVYP 199 (506)
T ss_pred ccccHHHHHHHHHhhCCCeeEEEEec
Confidence 35667777777776655666666543
No 126
>PF07591 PT-HINT: Pretoxin HINT domain; InterPro: IPR011451 This entry represents a cluster of homologous proteins identified in Leptospira interrogans. One member (Q8EZX6 from SWISSPROT) has been predicted to be a phenazine biosynthesis family protein.; PDB: 2JNQ_A 2JMZ_A.
Probab=27.36 E-value=27 Score=32.06 Aligned_cols=16 Identities=31% Similarity=0.480 Sum_probs=10.7
Q ss_pred CCCCCCEEEEEcCeec
Q psy9257 466 GLLVNHNILEVNGANV 481 (530)
Q Consensus 466 GLr~GDrILeVNGq~V 481 (530)
-|++||+|+..+|..+
T Consensus 76 ~L~~GD~L~~~~G~~~ 91 (130)
T PF07591_consen 76 DLKVGDRLLTADGSWV 91 (130)
T ss_dssp G--TTSEEEEE-SSEE
T ss_pred hCCCCCEEEcCCCCEE
Confidence 4999999999998753
No 127
>KOG0792|consensus
Probab=27.09 E-value=55 Score=39.98 Aligned_cols=79 Identities=22% Similarity=0.359 Sum_probs=55.0
Q ss_pred EEeccCCCCccceeeccCc------------EEEEc-------------cCCHHHHcC--CCCCCEEEEEcCeecCCCCh
Q psy9257 434 VTLHRDSSGHFGFHFNKGQ------------IVSLV-------------KDSSAARNG--LLVNHNILEVNGANVVGLKD 486 (530)
Q Consensus 434 VtL~kd~~g~LGfs~~~Gv------------V~sVv-------------~gSpAarAG--Lr~GDrILeVNGq~V~gls~ 486 (530)
..|..+..+.+||.+++|. +..+. +++.++... +-.||.++.|||..+....+
T Consensus 708 ~~~~~~~~g~~g~~~~g~~dq~~~~~~~p~a~sRv~~~~p~~~~~~~~~p~s~~d~~~P~~~e~dq~~~ingr~~~~~~~ 787 (1144)
T KOG0792|consen 708 SYLAEDPPGRFGFNLKGGLDQLQNLLNEPVAVSRVAGPGPLKMNGKLSEPESTADDCTPRLNEGDQVTSINGRDVSESEH 787 (1144)
T ss_pred cccccCCCccccccccchhhhhhccccccHHHHhhcccccchhcccccCCCCCccccccCCCcccceeeecccccccccc
Confidence 5566666788888886552 33444 677777776 77899999999999999887
Q ss_pred HHHHHHHHhC-----CCEEEEEEEeCcchhh
Q psy9257 487 KELLEAMEKG-----GSVLTLTLIPTSMYQH 512 (530)
Q Consensus 487 eeVv~iLkrs-----G~tVtLtVip~~~~e~ 512 (530)
+.++.+|+.. ++...+++.++...+.
T Consensus 788 ~~~vs~irs~r~~~~s~e~~l~~~~~~~~~~ 818 (1144)
T KOG0792|consen 788 DQVVSLIRSPRENITSGELMLTGRPNAPRER 818 (1144)
T ss_pred cchHHHHhhhhhccccccccccCCccccchh
Confidence 7777777632 3455666655544433
No 128
>COG3127 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=25.29 E-value=76 Score=37.66 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=20.5
Q ss_pred cCCHHHHcCCCCCCEEE-EEcCeecC
Q psy9257 458 KDSSAARNGLLVNHNIL-EVNGANVV 482 (530)
Q Consensus 458 ~gSpAarAGLr~GDrIL-eVNGq~V~ 482 (530)
..+-|++.|||.||.+. .|+|+++.
T Consensus 602 e~~~A~~LglKLGDtvTf~v~gq~i~ 627 (829)
T COG3127 602 EEGEAKRLGLKLGDTVTFMVLGQNIT 627 (829)
T ss_pred hHhHHHHhCCccCCEEEEEeccceEE
Confidence 44568889999999985 78998876
No 129
>KOG1985|consensus
Probab=23.24 E-value=1.2e+03 Score=28.42 Aligned_cols=21 Identities=33% Similarity=0.705 Sum_probs=13.9
Q ss_pred CCCccccccccCCCCCcccCC
Q psy9257 242 SVPPAIHDATRSTPSPIIAPS 262 (530)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~ 262 (530)
..||.|.|-|...|.||-+|-
T Consensus 136 ~~~P~~~~lttlpp~pl~~p~ 156 (887)
T KOG1985|consen 136 QLPPGINQLTTLPPPPLEIPV 156 (887)
T ss_pred CCCCCccccccCCCCCCCCCc
Confidence 456667777766777776653
No 130
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=21.51 E-value=1.6e+02 Score=33.13 Aligned_cols=37 Identities=11% Similarity=0.330 Sum_probs=32.5
Q ss_pred CCCEEEEEcCeecCCCChHHHHHHHHhCC-CEEEEEEE
Q psy9257 469 VNHNILEVNGANVVGLKDKELLEAMEKGG-SVLTLTLI 505 (530)
Q Consensus 469 ~GDrILeVNGq~V~gls~eeVv~iLkrsG-~tVtLtVi 505 (530)
.|-+|+-||+.-|.+.+.+.++++++++| ++|.+.+.
T Consensus 347 ~GKrVvlVDDSIVRGTTsr~IV~mlReAGAkEVHvria 384 (470)
T COG0034 347 KGKRVVLVDDSIVRGTTSRRIVQMLREAGAKEVHVRIA 384 (470)
T ss_pred CCCeEEEEccccccCccHHHHHHHHHHhCCCEEEEEec
Confidence 58899999999999999999999998655 78888875
No 131
>KOG0792|consensus
Probab=21.17 E-value=41 Score=41.00 Aligned_cols=61 Identities=31% Similarity=0.341 Sum_probs=48.5
Q ss_pred CCCeeEEEEEecC--------CcEEEEEec-------------cCCHhhhcC--CCCCCEEEEECCEEcCCcCHHHHHHH
Q psy9257 356 ASGLIGLRVCAIN--------EGVFVCLVE-------------RGSPASLVG--LRFGDQILSINGETVAGYNMKQVHKI 412 (530)
Q Consensus 356 s~G~LG~~V~~~~--------~GV~Vs~V~-------------pGSPAakAG--Lq~GDqILaING~~V~g~s~~~v~~L 412 (530)
..|.+|+-+.++. ..+.+.+|. +++.|+.+. +..||+++.|||..+....++..+.+
T Consensus 714 ~~g~~g~~~~g~~dq~~~~~~~p~a~sRv~~~~p~~~~~~~~~p~s~~d~~~P~~~e~dq~~~ingr~~~~~~~~~~vs~ 793 (1144)
T KOG0792|consen 714 PPGRFGFNLKGGLDQLQNLLNEPVAVSRVAGPGPLKMNGKLSEPESTADDCTPRLNEGDQVTSINGRDVSESEHDQVVSL 793 (1144)
T ss_pred CCccccccccchhhhhhccccccHHHHhhcccccchhcccccCCCCCccccccCCCcccceeeecccccccccccchHHH
Confidence 3777888877632 445677777 888888887 89999999999999999888877777
Q ss_pred HHhC
Q psy9257 413 LKAA 416 (530)
Q Consensus 413 Lk~a 416 (530)
++..
T Consensus 794 irs~ 797 (1144)
T KOG0792|consen 794 IRSP 797 (1144)
T ss_pred Hhhh
Confidence 7654
No 132
>PF14179 YppG: YppG-like protein
Probab=20.66 E-value=3.3e+02 Score=25.06 Aligned_cols=32 Identities=31% Similarity=0.626 Sum_probs=19.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcccCCCCcccc
Q psy9257 133 NSYPSVPNQPQAPNTYPSMPNQLQAPNGFYPL 164 (530)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (530)
|-||.--.+.+.|..+.|.-+|...-+|-|-+
T Consensus 52 ~PYP~~~~~~qqps~~ss~~sqFK~~dG~~D~ 83 (112)
T PF14179_consen 52 NPYPKQSPQQQQPSQFSSFMSQFKNSDGNYDF 83 (112)
T ss_pred CCCCCCCccCCCCCccchHHHHhhcCCCcccH
Confidence 33443333445667777777777777776654
No 133
>PF01887 SAM_adeno_trans: S-adenosyl-l-methionine hydroxide adenosyltransferase; InterPro: IPR002747 The S-adenosyl-L-methionine (SAM) hydroxide adenosyltransferase family groups several fluorinase and chlorinase enzymes whose common feature is that they mediate nucleophilic reactions of their respective halide ions to the C-5' carbon of SAM []. These enzymes utilise a rigorously conserved amino acid side chain triad (Asp-Arg-His) which may have a role in activating water to hydroxide ion. Structural studies indicate that the protein is a homotrimer, with each monomer being composed of N- and C-terminal domains [, ]. The N-terminal domain has a central seven-stranded beta-sheet, which combines parallel and antiparallel strands sandwiched between alpha helices. The C-terminal domain forms a beta-barrel with a greek-key topology. SAM is bound at the interface between the C-terminal domain of one monomer and the N-terminal domain of the neighbouring monomer, with a total of three molecules bound by the trimer.; PDB: 2CW5_C 1WU8_C 2WR8_A 2Q6O_B 2Q6L_A 2Q6K_A 2Q6I_A 2V7T_B 2C4U_F 1RQP_C ....
Probab=20.36 E-value=2.1e+02 Score=29.58 Aligned_cols=57 Identities=21% Similarity=0.220 Sum_probs=29.7
Q ss_pred CCCCeEEEEEecCCceeeEEecc----CCCCccceeec-cCc-EEEEccCCHHHHcCCCCCCEEE
Q psy9257 416 APVNNIRVVIRDRPLERTVTLHR----DSSGHFGFHFN-KGQ-IVSLVKDSSAARNGLLVNHNIL 474 (530)
Q Consensus 416 a~G~~VtLtVrR~~~e~tVtL~k----d~~g~LGfs~~-~Gv-V~sVv~gSpAarAGLr~GDrIL 474 (530)
..+..+.+.+.+.. ..+.+.+ -..+++.+.+. .|. -..+..+++|++-||+.||.|.
T Consensus 195 ~~g~~~~v~~~~~~--~~~~~~~ty~~v~~Ge~~~l~~S~G~LEiAvn~G~Aa~~lgl~~Gd~V~ 257 (258)
T PF01887_consen 195 RQGRRFRVRIGGAE--IIIPIVRTYADVPPGELLALFNSSGYLEIAVNQGSAAELLGLKPGDRVR 257 (258)
T ss_dssp TTT-EEEEEETTTC--EEEEEESSGGGSTTTSEEEEETTTSEEEEEETTB-HHHHHT--TTSEEE
T ss_pred CCCCEEEEEecCCc--eEEeEeCccccCCCCCEEEEECCCCCEEEEEeCcCHHHHcCCCCCCEEE
Confidence 34555666555433 2233322 23344554443 233 3467788999999999999874
No 134
>PF15471 TMEM171: Transmembrane protein family 171
Probab=20.19 E-value=1.1e+02 Score=32.44 Aligned_cols=10 Identities=60% Similarity=1.208 Sum_probs=7.5
Q ss_pred CCCCCCCCCC
Q psy9257 60 HSANPPPYYQ 69 (530)
Q Consensus 60 ~~~~~~~~~~ 69 (530)
.+.|||+||.
T Consensus 246 ~senPPsY~S 255 (319)
T PF15471_consen 246 PSENPPSYYS 255 (319)
T ss_pred CCCCCCCcch
Confidence 4678888874
Done!