RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9257
(530 letters)
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain,
scaffolding protein signaling protein; 1.56A {Homo
sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A
1obz_A 1w9o_A 1w9q_A 1ybo_A
Length = 166
Score = 176 bits (449), Expect = 3e-53
Identities = 92/160 (57%), Positives = 122/160 (76%)
Query: 348 RELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMK 407
RE++LCKD G IGLR+ +I+ G+FV LV+ SPASLVGLRFGDQ+L INGE AG++
Sbjct: 6 REVILCKDQDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSD 65
Query: 408 QVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSSGHFGFHFNKGQIVSLVKDSSAARNGL 467
+ HK+LK A I + IRDRP ERT+T+H+DS+GH GF F G+I S+VKDSSAARNGL
Sbjct: 66 KAHKVLKQAFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGL 125
Query: 468 LVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPT 507
L HNI E+NG NV+GLKD ++ + + G+V+T+T++P
Sbjct: 126 LTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPA 165
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding;
2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A
1u37_A 1u38_A 2yt8_A
Length = 388
Score = 145 bits (366), Expect = 5e-39
Identities = 51/225 (22%), Positives = 95/225 (42%), Gaps = 8/225 (3%)
Query: 302 NAANERESDAAGNTVARQAPRDSCTMIAPLSSSGSGLKKAYVTNGIRELVLCKDASGLIG 361
+ A + A G + ++ +I L + +EL L K ++G
Sbjct: 160 SVAYQEFLRANGINPEDLSQKEYSDIINTQEMYNDDLIHFSNSENCKELQLEKHKGEILG 219
Query: 362 LRVCAINEG-----VFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKA 415
+ V G V + + G PA+ G L GDQI+SING ++ G + I+K
Sbjct: 220 VVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKG 279
Query: 416 AP--VNNIRVVIRDRPLERTVTLHRDSSGHFGFHFNKGQIVSLVKDSSAARNGLLVNHNI 473
++ P+ + D GF G I SL++ A R G+ V H I
Sbjct: 280 LKNQTQVKLNIVSCPPVTTVLIKRPDLKYQLGFSVQNGIICSLMRGGIAERGGVRVGHRI 339
Query: 474 LEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPTSMYQHMMKKMS 518
+E+NG +VV +++++A+ + + +P +M++ + + +
Sbjct: 340 IEINGQSVVATAHEKIVQALSNSVGEIHMKTMPAAMFRLLTGQET 384
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Length = 82
Score = 111 bits (279), Expect = 6e-30
Identities = 43/76 (56%), Positives = 60/76 (78%)
Query: 432 RTVTLHRDSSGHFGFHFNKGQIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLE 491
RT+T+H+DS+GH GF F G+I S+VKDSSAARNGLL HNI E+NG NV+GLKD ++ +
Sbjct: 6 RTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIAD 65
Query: 492 AMEKGGSVLTLTLIPT 507
+ G+V+T+T++P
Sbjct: 66 ILSTSGTVVTITIMPA 81
Score = 62.7 bits (153), Expect = 1e-12
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Query: 348 RELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMK 407
R + + KD++G +G + + + + S A+ GL I ING+ V G
Sbjct: 6 RTITMHKDSTGHVGFIF----KNGKITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDS 61
Query: 408 QVHKILKAAPVNNIRVVI 425
Q+ IL + + + I
Sbjct: 62 QIADILSTSG-TVVTITI 78
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper
chaperone for superoxide dismutase, neuronal adaptor,
protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 90
Score = 100 bits (252), Expect = 4e-26
Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 9/99 (9%)
Query: 410 HKILKAAPVNNIRVVIRDRPLERTVTLHRDSSGHFGFHFNKGQIVSLVKDSSAARNGLLV 469
H + N+ V+ RP D GF G I SL++ A R G+ V
Sbjct: 1 HHHHHLETMGNVTTVLIRRP---------DLRYQLGFSVQNGIICSLMRGGIAERGGVRV 51
Query: 470 NHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPTS 508
H I+E+NG +VV ++++ + + + +P +
Sbjct: 52 GHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKTMPAA 90
Score = 58.6 bits (142), Expect = 4e-11
Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 5/87 (5%)
Query: 339 KKAYVTNGIRELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSING 398
+ N L+ D +G V + +C + RG A G+R G +I+ ING
Sbjct: 5 HLETMGNVTTVLIRRPDLRYQLGFSV----QNGIICSLMRGGIAERGGVRVGHRIIEING 60
Query: 399 ETVAGYNMKQVHKILKAAPVNNIRVVI 425
++V +++ IL A I +
Sbjct: 61 QSVVATPHEKIVHILSNAV-GEIHMKT 86
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem
repeats, scaffold protein, protein binding; NMR {Rattus
norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Length = 196
Score = 103 bits (259), Expect = 8e-26
Identities = 30/185 (16%), Positives = 74/185 (40%), Gaps = 27/185 (14%)
Query: 347 IRELVLCKDASGLIGLRV-------CAINEGVFVCLVERGSPASLVG-LRFGDQILSING 398
E+VL D G+++ ++ + +E SPA G L+ GD++++ING
Sbjct: 7 TTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAING 66
Query: 399 ETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERT---------VTLHRDSSGHFGFHFN 449
++ +++L+ + + + + + + + V L + S G +
Sbjct: 67 IPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAESVIPSSGTFHVKLPKKHSVELGITIS 126
Query: 450 KGQ---------IVSLVKDSSAARNGLL-VNHNILEVNGANVVGLKDKELLEAMEKGGSV 499
I + K S A R G L + +L ++ + ++ ++ +++ +
Sbjct: 127 SPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCEDL 186
Query: 500 LTLTL 504
+ L +
Sbjct: 187 VKLKI 191
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ
tandem, alternative splicing, cell junction, cytoplasm;
2.30A {Rattus norvegicus}
Length = 200
Score = 98.7 bits (246), Expect = 5e-24
Identities = 38/186 (20%), Positives = 73/186 (39%), Gaps = 28/186 (15%)
Query: 346 GIRELVLCKDASGLIGLRV---CAINEGVFVCLVERGSPASLVG-LRFGDQILSINGETV 401
G + L K +GL V + V + +G A+ L GD I ++NG +
Sbjct: 7 GSTVVELMKKEGTTLGLTVSGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINL 66
Query: 402 AGYNMKQVHKILKAAPVNNIRVVIRDRPLE-----------RTVTLHRDSSGHFGF---- 446
A + ++ +LK + V + P VTLH++ + FGF
Sbjct: 67 AKFRHDEIISLLKNVGERVVLEVEYELPPVSIQGSSVMFRTVEVTLHKEGNT-FGFVIRG 125
Query: 447 ------HFNKGQIVS-LVKDSSAARNGLL-VNHNILEVNGANVVGLKDKELLEAMEKGGS 498
+ ++ +++ + A R G + +L V+G ++G E + +++ G
Sbjct: 126 GAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQ 185
Query: 499 VLTLTL 504
TL +
Sbjct: 186 EATLLI 191
Score = 55.5 bits (134), Expect = 5e-09
Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 8/92 (8%)
Query: 431 ERTVTLHRDSSGHFGFHFNKGQ-------IVSLVKDSSAARNG-LLVNHNILEVNGANVV 482
V L + G + G + +L + AAR+ L V I VNG N+
Sbjct: 8 STVVELMKKEGTTLGLTVSGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLA 67
Query: 483 GLKDKELLEAMEKGGSVLTLTLIPTSMYQHMM 514
+ E++ ++ G + L + +
Sbjct: 68 KFRHDEIISLLKNVGERVVLEVEYELPPVSIQ 99
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90,
GLUR6, cell juncti membrane, lipoprotein, membrane,
palmitate, phosphoprotein; 2.05A {Rattus norvegicus}
PDB: 3zrt_A 2ka9_A
Length = 196
Score = 94.4 bits (235), Expect = 1e-22
Identities = 37/184 (20%), Positives = 70/184 (38%), Gaps = 29/184 (15%)
Query: 347 IRELVLCKDASGLIGLRVC--------AINEGVFVCLVERGSPASLVG-LRFGDQILSIN 397
E+ L + SGL G + + +F+ + G A+ G LR D IL +N
Sbjct: 6 YEEITLERGNSGL-GFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVN 64
Query: 398 GETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLE----RTVTLHRDSSGHFGFHFNKGQ- 452
V + LK A + +R+ + R + L + G GF G
Sbjct: 65 EVDVREVTHSAAVEALKEAG-SIVRLYVMRRKPPAEKVMEIKLIKGPKG-LGFSIAGGVG 122
Query: 453 -----------IVSLVKDSSAARNGLL-VNHNILEVNGANVVGLKDKELLEAMEKGGSVL 500
+ +++ +A ++G L + IL VN + + ++ + A++ V+
Sbjct: 123 NQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVV 182
Query: 501 TLTL 504
L +
Sbjct: 183 YLKV 186
Score = 53.2 bits (128), Expect = 2e-08
Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 14/112 (12%)
Query: 432 RTVTLHRDSSGHFGFHFNKGQ------------IVSLVKDSSAARNGLL-VNHNILEVNG 478
+TL R +SG GF G I ++ +AA++G L VN +IL VN
Sbjct: 7 EEITLERGNSG-LGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNE 65
Query: 479 ANVVGLKDKELLEAMEKGGSVLTLTLIPTSMYQHMMKKMSFNLVKDKMDHSI 530
+V + +EA+++ GS++ L ++ + ++ + SI
Sbjct: 66 VDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGFSI 117
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding,
nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens}
PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Length = 139
Score = 81.6 bits (201), Expect = 1e-18
Identities = 25/130 (19%), Positives = 48/130 (36%), Gaps = 18/130 (13%)
Query: 332 SSSGSGLKKAYVTNGIRELVLCKDASG------------------LIGLRVCAINEGVFV 373
S G + Y + ++ + + K G ++G++V
Sbjct: 9 SGVDLGTENLYFQSMVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYV 68
Query: 374 CLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERT 433
V G PA + GL+ GD+I+ +NG + Q K L +R+++ + L++
Sbjct: 69 TRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQSLQKA 128
Query: 434 VTLHRDSSGH 443
V S
Sbjct: 129 VQQSMLSETE 138
Score = 46.2 bits (109), Expect = 2e-06
Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 23/112 (20%)
Query: 429 PLERTVTLHR---DSSGHFGF------------------HFNKGQIVSLV-KDSSAARNG 466
+ + V +H+ + GF +KG V+ V + A G
Sbjct: 22 SMVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG 81
Query: 467 LLVNHNILEVNGANVVGLKDKELLEAMEK-GGSVLTLTLIPTSMYQHMMKKM 517
L + I++VNG ++ + + + + K V+ L + S+ + + + M
Sbjct: 82 LQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQSLQKAVQQSM 133
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein
complex, PDZ domain, peptide binding protein; 2.60A
{Drosophila melanogaster}
Length = 206
Score = 83.0 bits (205), Expect = 2e-18
Identities = 29/193 (15%), Positives = 60/193 (31%), Gaps = 18/193 (9%)
Query: 329 APLSSSGSGLKKAYVTNGIRELVLCKDASGLIGLRVC-----AINEGVFVCLVERGSPAS 383
P S N + L + + G+ VC + G + V +
Sbjct: 1 GPGSKPQEPATAEIKPNKKILIELKVEKKPM-GVIVCGGKNNHVTTGCVITHVYPEGQVA 59
Query: 384 LVG-LRFGDQILSINGETVAGYNM--KQVHKILKAAPVNNIRVVIRDRPLERT----VTL 436
L+ D I ING + +M +VH++ + + + V L
Sbjct: 60 ADKRLKIFDHICDINGTPIHVGSMTTLKVHQLFHTTYEKAVTLTVFRADPPELEKFNVDL 119
Query: 437 HRDSSGHFGFHFNKGQ----IVSLVKDSSAARNGLL-VNHNILEVNGANVVGLKDKELLE 491
+ + G + + I L++ + L I + NG + GL +
Sbjct: 120 MKKAGKELGLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYA 179
Query: 492 AMEKGGSVLTLTL 504
+ +++ +
Sbjct: 180 LFKGANGKVSMEV 192
Score = 58.4 bits (141), Expect = 5e-10
Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Query: 348 RELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNM 406
+ L K A +GL + G + + +G + L+ GD I NG+ + G
Sbjct: 115 FNVDLMKKAGKELGLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPF 174
Query: 407 KQVHKILKAAPVNNIRVVI-RDRPLERT 433
+ + + K A + + + R +P RT
Sbjct: 175 QVCYALFKGAN-GKVSMEVTRPKPTLRT 201
>2eaq_A LIM domain only protein 7; conserved hypothetical protein,
structural genomics, NPPSFA; 1.46A {Homo sapiens}
Length = 90
Score = 75.5 bits (186), Expect = 4e-17
Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 350 LVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQV 409
+ S G + G+FV VE GSPA L+ D+I++IN + + K+
Sbjct: 9 INQTPGKSLDFGFTIKWDIPGIFVASVEAGSPAEFSQLQVDDEIIAINNTKFSYNDSKEW 68
Query: 410 HKILKAAPVN-NIRVVIR 426
+ + A ++ + +R
Sbjct: 69 EEAMAKAQETGHLVMDVR 86
Score = 57.8 bits (140), Expect = 6e-11
Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 6/80 (7%)
Query: 431 ERTVTLHRDSSGHFGFHFN-----KGQIVSLV-KDSSAARNGLLVNHNILEVNGANVVGL 484
+ +++++ F F G V+ V S A + L V+ I+ +N
Sbjct: 4 DMRISINQTPGKSLDFGFTIKWDIPGIFVASVEAGSPAEFSQLQVDDEIIAINNTKFSYN 63
Query: 485 KDKELLEAMEKGGSVLTLTL 504
KE EAM K L +
Sbjct: 64 DSKEWEEAMAKAQETGHLVM 83
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo
sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Length = 91
Score = 72.7 bits (179), Expect = 5e-16
Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 7/92 (7%)
Query: 428 RPLERTVTLHRDSSGHFGF-----HFNKGQIVSLV-KDSSAARNGLLVNHNILEVNGANV 481
R L R L + +G +GF GQ + LV S A + GLL ++EVNG NV
Sbjct: 1 RMLPRLCCLEKGPNG-YGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENV 59
Query: 482 VGLKDKELLEAMEKGGSVLTLTLIPTSMYQHM 513
++++ + + + L ++ + +
Sbjct: 60 EKETHQQVVSRIRAALNAVRLLVVDPETDEQL 91
Score = 66.1 bits (162), Expect = 8e-14
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 348 RELVLCKDASGL-IGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNM 406
R L K +G L G ++ LVE GSPA GL GD+++ +NGE V
Sbjct: 5 RLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETH 64
Query: 407 KQVHKILKAAPVNNIRVVIRDRPLE 431
+QV ++AA N +R+++ D +
Sbjct: 65 QQVVSRIRAAL-NAVRLLVVDPETD 88
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 117
Score = 71.7 bits (176), Expect = 2e-15
Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 6/115 (5%)
Query: 332 SSSGSGLKKAYVTNGIRELVLCKDASGLIGLRVCAINE-GVFVCLVERGSPASLVGLRFG 390
SS G K R + + K + L G+ + + + G++V V GS A GL +G
Sbjct: 5 SSGGERRKDRPYVEEPRHVKVQKGSEPL-GISIVSGEKGGIYVSKVTVGSIAHQAGLEYG 63
Query: 391 DQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHR---DSSG 442
DQ+L NG + +Q I+ + I ++ + P ++ H SSG
Sbjct: 64 DQLLEFNGINLRSATEQQARLIIGQQC-DTITILAQYNPHVHQLSSHSRSGPSSG 117
Score = 51.7 bits (124), Expect = 2e-08
Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 9/87 (10%)
Query: 426 RDRPLE---RTVTLHRDSSGHFGFHF----NKGQIVSLV-KDSSAARNGLLVNHNILEVN 477
+DRP R V + + S G G VS V S A + GL +LE N
Sbjct: 12 KDRPYVEEPRHVKVQKGSEP-LGISIVSGEKGGIYVSKVTVGSIAHQAGLEYGDQLLEFN 70
Query: 478 GANVVGLKDKELLEAMEKGGSVLTLTL 504
G N+ +++ + + +T+
Sbjct: 71 GINLRSATEQQARLIIGQQCDTITILA 97
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain,
intracellular signaling cascade, signal transduction;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 111
Score = 71.0 bits (174), Expect = 3e-15
Identities = 29/113 (25%), Positives = 48/113 (42%), Gaps = 3/113 (2%)
Query: 333 SSGSGLKKAYVTNGIRELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQ 392
SSGS + + R + + L G + N V V ++ ASL G + GD
Sbjct: 2 SSGSSGSASKRWSPPRGIHFTVEEGDL-GFTLRG-NTPVQVHFLDPHCSASLAGAKEGDY 59
Query: 393 ILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSSGHFG 445
I+SI G + +V K+LK+ + + + L+ T ++H S G
Sbjct: 60 IVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKVV-SLLDSTSSMHNKSGPSSG 111
Score = 51.3 bits (123), Expect = 2e-08
Identities = 14/78 (17%), Positives = 30/78 (38%), Gaps = 5/78 (6%)
Query: 432 RTVTLHRDSSGHFGFHFNKG---QIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKE 488
R + + GF Q+ L SA+ G I+ + G + L E
Sbjct: 17 RGIHFTVEEGD-LGFTLRGNTPVQVHFLDPHCSASLAGAKEGDYIVSIQGVDCKWLTVSE 75
Query: 489 LLEAMEK-GGSVLTLTLI 505
+++ ++ GG + + ++
Sbjct: 76 VMKLLKSFGGEEVEMKVV 93
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A
{Homo sapiens}
Length = 96
Score = 70.1 bits (172), Expect = 4e-15
Identities = 21/93 (22%), Positives = 43/93 (46%), Gaps = 5/93 (5%)
Query: 348 RELVLCKDASG----LIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAG 403
R L L K G L + G F+ V+ G PA G++ GD+++++ GE+V G
Sbjct: 5 RCLHLEKGPQGFGFLLREEKGLDGRPGQFLWEVDPGLPAKKAGMQAGDRLVAVAGESVEG 64
Query: 404 YNMKQVHKILKAAPVNNIRVVIRDRPLERTVTL 436
++ ++ + + + + D +R ++
Sbjct: 65 LGHEETVSRIQGQG-SCVSLTVVDPEADRETSV 96
Score = 63.5 bits (155), Expect = 7e-13
Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 12/88 (13%)
Query: 428 RPLERTVTLHRDSSGHFGFH--------FNKGQIVSLV-KDSSAARNGLLVNHNILEVNG 478
+P R + L + G FGF GQ + V A + G+ ++ V G
Sbjct: 3 KP--RCLHLEKGPQG-FGFLLREEKGLDGRPGQFLWEVDPGLPAKKAGMQAGDRLVAVAG 59
Query: 479 ANVVGLKDKELLEAMEKGGSVLTLTLIP 506
+V GL +E + ++ GS ++LT++
Sbjct: 60 ESVEGLGHEETVSRIQGQGSCVSLTVVD 87
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling
protein; NMR {Homo sapiens}
Length = 83
Score = 69.6 bits (171), Expect = 4e-15
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 429 PLERTVTLHRDSSGHFGF--HFNKGQIVSLV-KDSSAARNGLLVNHNILEVNGANVVGLK 485
P R+V + R +G +GF ++S V + S A GL IL VN NV
Sbjct: 1 PRVRSVEVARGRAG-YGFTLSGQAPCVLSCVMRGSPADFVGLRAGDQILAVNEINVKKAS 59
Query: 486 DKELLEAMEKGGSVLTLTLIP 506
+++++ + K VL + +
Sbjct: 60 HEDVVKLIGKCSGVLHMVIAE 80
Score = 66.9 bits (164), Expect = 3e-14
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 347 IRELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNM 406
+R + + + +G G + + V RGSPA VGLR GDQIL++N V +
Sbjct: 3 VRSVEVARGRAGY-GFTLSG-QAPCVLSCVMRGSPADFVGLRAGDQILAVNEINVKKASH 60
Query: 407 KQVHKILKAAPVNNIRVVIRDRP 429
+ V K++ + +VI +
Sbjct: 61 EDVVKLIGKCS-GVLHMVIAEGV 82
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 102
Score = 70.1 bits (172), Expect = 5e-15
Identities = 25/96 (26%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
Query: 348 RELVLCKDASGL-IGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNM 406
R +V+ K ++G LR +G + +E GSPA GL+ D ++++NG++V +
Sbjct: 8 RVVVIKKGSNGYGFYLRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDH 67
Query: 407 KQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSSG 442
V ++++ + +++ D+ E +L SSG
Sbjct: 68 DGVVEMIRKGG-DQTTLLVLDKEAESIYSLSGPSSG 102
Score = 63.2 bits (154), Expect = 1e-12
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 7/81 (8%)
Query: 432 RTVTLHRDSSGHFGFH-----FNKGQIVSLV-KDSSAARNGLLVNHNILEVNGANVVGLK 485
R V + + S+G +GF+ KGQI+ + S A GL N ++ VNG +V L
Sbjct: 8 RVVVIKKGSNG-YGFYLRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALD 66
Query: 486 DKELLEAMEKGGSVLTLTLIP 506
++E + KGG TL ++
Sbjct: 67 HDGVVEMIRKGGDQTTLLVLD 87
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain,
adaptor protein, SR-BI, signaling protein; 1.30A {Mus
musculus} PDB: 3r69_A*
Length = 95
Score = 68.8 bits (169), Expect = 1e-14
Identities = 24/87 (27%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 348 RELVLCKDASGLIG--LRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYN 405
R +V+ K ++G G LR +G + +E GSPA GL+ D ++++NG++V +
Sbjct: 7 RVVVIKKGSNGY-GFYLRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALD 65
Query: 406 MKQVHKILKAAPVNNIRVVIRDRPLER 432
V ++++ + +++ D+ LER
Sbjct: 66 HDGVVEMIRKGG-DQTTLLVLDKELER 91
Score = 63.5 bits (155), Expect = 7e-13
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 7/81 (8%)
Query: 432 RTVTLHRDSSGHFGFH-----FNKGQIVSLV-KDSSAARNGLLVNHNILEVNGANVVGLK 485
R V + + S+G +GF+ KGQI+ + S A GL N ++ VNG +V L
Sbjct: 7 RVVVIKKGSNG-YGFYLRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALD 65
Query: 486 DKELLEAMEKGGSVLTLTLIP 506
++E + KGG TL ++
Sbjct: 66 HDGVVEMIRKGGDQTTLLVLD 86
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling
protein; 1.80A {Mus musculus}
Length = 106
Score = 69.0 bits (169), Expect = 1e-14
Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 6/91 (6%)
Query: 432 RTVTLHRDSSGHFGFH-----FNKGQIVSLV-KDSSAARNGLLVNHNILEVNGANVVGLK 485
R L + ++GF G ++ ++ + S A + GLL +L +NG V +
Sbjct: 3 RESKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEE 62
Query: 486 DKELLEAMEKGGSVLTLTLIPTSMYQHMMKK 516
+++E + K G+ +TL ++ Y+ +K
Sbjct: 63 HAQVVELVRKSGNSVTLLVLDGDSYEKAVKN 93
Score = 65.9 bits (161), Expect = 1e-13
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 4/97 (4%)
Query: 346 GIRELVLCKDASGLIG--LRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAG 403
G RE L K G LR+ +G + ++E GSPA GL GD++L ING V
Sbjct: 1 GPRESKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDK 60
Query: 404 YNMKQVHKILKAAPVNNIR-VVIRDRPLERTVTLHRD 439
QV ++++ + N++ +V+ E+ V D
Sbjct: 61 EEHAQVVELVRKSG-NSVTLLVLDGDSYEKAVKNQVD 96
>2ego_A General receptor for phosphoinositides 1- associated scaffold
protein; PDZ domain, ligand-free, protein binding; 1.80A
{Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Length = 96
Score = 68.6 bits (168), Expect = 1e-14
Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 14/94 (14%)
Query: 429 PLERTVTLHRDSSGHFGFH-------------FNKGQIVSLV-KDSSAARNGLLVNHNIL 474
+ +TL + + FGF V+ V + S A GL I
Sbjct: 3 QQRKVLTLEKGDNQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAGLTPGDTIA 62
Query: 475 EVNGANVVGLKDKELLEAMEKGGSVLTLTLIPTS 508
VNG NV G++ +E+++ ++ G+VL L + +
Sbjct: 63 SVNGLNVEGIRHREIVDIIKASGNVLRLETLYGT 96
Score = 60.5 bits (147), Expect = 8e-12
Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 11/90 (12%)
Query: 348 RELVLCKDASG-----LIGLRV-----CAINEGVFVCLVERGSPASLVGLRFGDQILSIN 397
+ L L K + + + + FV V SPA L GL GD I S+N
Sbjct: 6 KVLTLEKGDNQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAGLTPGDTIASVN 65
Query: 398 GETVAGYNMKQVHKILKAAPVNNIRVVIRD 427
G V G +++ I+KA+ N +R+
Sbjct: 66 GLNVEGIRHREIVDIIKASG-NVLRLETLY 94
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 106
Score = 69.0 bits (169), Expect = 1e-14
Identities = 19/98 (19%), Positives = 43/98 (43%), Gaps = 4/98 (4%)
Query: 348 RELVLCKDASGL-IGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNM 406
R L K+ L+ +GV++ + A G+ D ++ +NGE V +
Sbjct: 10 RLCYLVKEGGSYGFSLKTVQGKKGVYMTDITPQGVAMRAGVLADDHLIEVNGENVEDASH 69
Query: 407 KQVHKILKAAPVNNIRVVIRDRPLERTVTLHRD--SSG 442
++V + +K + + + ++ D+ ++ + SSG
Sbjct: 70 EEVVEKVKKSG-SRVMFLLVDKETDKRHVEQKSGPSSG 106
Score = 63.2 bits (154), Expect = 1e-12
Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 8/97 (8%)
Query: 429 PLERTVTLHRDSSGHFGF-----HFNKGQIVSLV-KDSSAARNGLLVNHNILEVNGANVV 482
R L ++ +GF KG ++ + A R G+L + +++EVNG NV
Sbjct: 7 GQPRLCYLVKEGGS-YGFSLKTVQGKKGVYMTDITPQGVAMRAGVLADDHLIEVNGENVE 65
Query: 483 GLKDKELLEAMEKGGSVLTLTLI-PTSMYQHMMKKMS 518
+E++E ++K GS + L+ + +H+ +K
Sbjct: 66 DASHEEVVEKVKKSGSRVMFLLVDKETDKRHVEQKSG 102
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm,
phosphoprotein, transport protein, CAsp; 2.60A {Homo
sapiens} PDB: 2eej_A
Length = 91
Score = 68.1 bits (167), Expect = 1e-14
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 348 RELVLCKDASGLIGLRVCAI--NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYN 405
+ L K +G G + AI G F+ V++G PA L GL D I+ +NG V
Sbjct: 5 KLCRLAKGENGY-GFHLNAIRGLPGSFIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDEP 63
Query: 406 MKQVHKILKAAPVNNIRVVIRDRPLERTV 434
++V ++++ N+ +++ + + TV
Sbjct: 64 YEKVVDRIQSSG-KNVTLLVCGKKAQDTV 91
Score = 66.1 bits (162), Expect = 7e-14
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
Query: 428 RPLERTVTLHRDSSGHFGFHF-----NKGQIVSLV-KDSSAARNGLLVNHNILEVNGANV 481
+P + L + +G +GFH G + V K A GL I+EVNG NV
Sbjct: 3 KP--KLCRLAKGENG-YGFHLNAIRGLPGSFIKEVQKGGPADLAGLEDEDVIIEVNGVNV 59
Query: 482 VGLKDKELLEAMEKGGSVLTLTLIP 506
+ +++++ ++ G +TL +
Sbjct: 60 LDEPYEKVVDRIQSSGKNVTLLVCG 84
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 100
Score = 68.1 bits (167), Expect = 2e-14
Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 10/100 (10%)
Query: 333 SSGSGLKKAYVTNGIRELVLCKDASGLIGLRVC---AINEGVFVCLVERGSPASLVGLRF 389
SSGS ++ I + + K +G +G V G+FV VE GS A GL
Sbjct: 2 SSGSS-----GSDIIHSVRVEKSPAGRLGFSVRGGSEHGLGIFVSKVEEGSSAERAGLCV 56
Query: 390 GDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRP 429
GD+I +NG ++ M K+L ++ + + +++R
Sbjct: 57 GDKITEVNGLSLESTTMGSAVKVLTSS--SRLHMMVRRMG 94
Score = 56.6 bits (137), Expect = 2e-10
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 8/80 (10%)
Query: 432 RTVTLHRDSSGHFGFH------FNKGQIVSLV-KDSSAARNGLLVNHNILEVNGANVVGL 484
+V + + +G GF G VS V + SSA R GL V I EVNG ++
Sbjct: 12 HSVRVEKSPAGRLGFSVRGGSEHGLGIFVSKVEEGSSAERAGLCVGDKITEVNGLSLEST 71
Query: 485 KDKELLEAMEKGGSVLTLTL 504
++ + S L + +
Sbjct: 72 TMGSAVKVL-TSSSRLHMMV 90
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa,
Na/PI cotransporter C- terminal-associated protein,
NAPI-CAP1; NMR {Mus musculus}
Length = 114
Score = 67.9 bits (166), Expect = 4e-14
Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 6/91 (6%)
Query: 432 RTVTLHRDSSGHFGFH-----FNKGQIVSLV-KDSSAARNGLLVNHNILEVNGANVVGLK 485
R L + ++GF G ++ ++ + S A + GLL +L +NG V +
Sbjct: 15 RECKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEE 74
Query: 486 DKELLEAMEKGGSVLTLTLIPTSMYQHMMKK 516
+++E + K G+ +TL ++ Y+ +K
Sbjct: 75 HAQVVELVRKSGNSVTLLVLDGDSYEKAVKN 105
Score = 63.6 bits (155), Expect = 1e-12
Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 7/111 (6%)
Query: 332 SSSGSGLKKAYVTNGIRELVLCKDASGLIG--LRVCAINEGVFVCLVERGSPASLVGLRF 389
SS SG+ + RE L K G LR+ +G + ++E GSPA GL
Sbjct: 2 SSGSSGMASTFNP---RECKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLD 58
Query: 390 GDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPL-ERTVTLHRD 439
GD++L ING V QV ++++ + N++ +++ D E+ V D
Sbjct: 59 GDRVLRINGVFVDKEEHAQVVELVRKSG-NSVTLLVLDGDSYEKAVKNQVD 108
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune
enteropathy-related antigen AIE-75 ,antigen
NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2kbs_A
Length = 114
Score = 67.1 bits (164), Expect = 7e-14
Identities = 29/113 (25%), Positives = 49/113 (43%), Gaps = 3/113 (2%)
Query: 333 SSGSGLKKAYVTNGIRELVLCKDASGLIGLRVC---AINEGVFVCLVERGSPASLVGLRF 389
SSGS N +++ + S +G + G+F+ V+ GS ++ VGL
Sbjct: 2 SSGSSGSPGNRENKEKKVFISLVGSRGLGCSISSGPIQKPGIFISHVKPGSLSAEVGLEI 61
Query: 390 GDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSSG 442
GDQI+ +NG + + K+ +LK++ I +V SSG
Sbjct: 62 GDQIVEVNGVDFSNLDHKEAVNVLKSSRSLTISIVAAAGRELFMTDRSGPSSG 114
Score = 49.8 bits (119), Expect = 7e-08
Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 8/93 (8%)
Query: 431 ERTVTLHRDSSGHFGF------HFNKGQIVSLV-KDSSAARNGLLVNHNILEVNGANVVG 483
E+ V + S G G +S V S +A GL + I+EVNG +
Sbjct: 16 EKKVFISLVGSRGLGCSISSGPIQKPGIFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSN 75
Query: 484 LKDKELLEAMEKGGSVLTLTLIPTSMYQHMMKK 516
L KE + + K LT++++ + + M
Sbjct: 76 LDHKEAVNVL-KSSRSLTISIVAAAGRELFMTD 107
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, signaling protein; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 100
Score = 65.5 bits (160), Expect = 1e-13
Identities = 21/98 (21%), Positives = 42/98 (42%), Gaps = 3/98 (3%)
Query: 332 SSSGSGLKKAYVTNGIRELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGD 391
SSGS + ++ + + G G +C + V V V+ G PA GL+ D
Sbjct: 1 GSSGSSGEGDPENGEKLQITIRRGKDGF-GFTICC-DSPVRVQAVDSGGPAERAGLQQLD 58
Query: 392 QILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRP 429
+L +N V + ++ +++ P + I +++
Sbjct: 59 TVLQLNERPVEHWKCVELAHEIRSCP-SEIILLVWRVS 95
Score = 62.1 bits (151), Expect = 3e-12
Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 4/82 (4%)
Query: 426 RDRPLERTVTLHRDSSGHFGF--HFNKGQIVSLV-KDSSAARNGLLVNHNILEVNGANVV 482
+ + +T+ R G FGF + V V A R GL +L++N V
Sbjct: 11 PENGEKLQITIRRGKDG-FGFTICCDSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVE 69
Query: 483 GLKDKELLEAMEKGGSVLTLTL 504
K EL + S + L +
Sbjct: 70 HWKCVELAHEIRSCPSEIILLV 91
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ
domain, PDZ2, acetylation, cell projection, membrane,
polymorphism; NMR {Homo sapiens}
Length = 98
Score = 65.4 bits (160), Expect = 2e-13
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Query: 432 RTVTLHRDSSGHFGFH-----FNKGQIVSLV-KDSSAARNGLLVNHNILEVNGANVVGLK 485
R T+ + SG +GF+ GQ + V DS A +GL I+EVNG + G +
Sbjct: 11 RLCTMKKGPSG-YGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQ 69
Query: 486 DKELLEAMEKGGSVLTLTLIPTSMYQH 512
+++ A+ GG L ++ +
Sbjct: 70 HGDVVSAIRAGGDETKLLVVDRETDEF 96
Score = 64.7 bits (158), Expect = 3e-13
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Query: 348 RELVLCKDASGL-IGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNM 406
R + K SG L G F+ V+ SPA GLR D+I+ +NG + G
Sbjct: 11 RLCTMKKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQH 70
Query: 407 KQVHKILKAAPVNNIRVVIRDRPLER 432
V ++A + ++++ DR +
Sbjct: 71 GDVVSAIRAGG-DETKLLVVDRETDE 95
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain,
arhgef11, KIAA0380, structural genomics, NPPSFA; NMR
{Homo sapiens} PDB: 2omj_A 2os6_A
Length = 93
Score = 64.6 bits (158), Expect = 3e-13
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 348 RELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMK 407
R +++ KD G G V + V V V G A G++ GD+I+ +NG V +
Sbjct: 10 RCVIIQKDQHGF-GFTVSG-DRIVLVQSVRPGGAAMKAGVKEGDRIIKVNGTMVTNSSHL 67
Query: 408 QVHKILKAAPVNNIRVVIRDR 428
+V K++K+ + ++
Sbjct: 68 EVVKLIKSGAYVALTLLGSSS 88
Score = 61.6 bits (150), Expect = 4e-12
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 429 PLERTVTLHRDSSGHFGF--HFNKGQIVSLV-KDSSAARNGLLVNHNILEVNGANVVGLK 485
++R V + +D G FGF ++ +V V +A + G+ I++VNG V
Sbjct: 7 GVQRCVIIQKDQHG-FGFTVSGDRIVLVQSVRPGGAAMKAGVKEGDRIIKVNGTMVTNSS 65
Query: 486 DKELLEAMEKGGSVLTLTLIPTS 508
E+++ + K G+ + LTL+ +S
Sbjct: 66 HLEVVKLI-KSGAYVALTLLGSS 87
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation,
structural genomics, structural genomics consortium,
SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Length = 90
Score = 64.2 bits (157), Expect = 3e-13
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 9/85 (10%)
Query: 428 RPLERTVTLHRDSSGHFGFH-----FNKGQIVSLV-KDSSAARNGLLVNHNILEVNGANV 481
RP R L + G +GF+ GQ + V S AAR+GL ++EVNG NV
Sbjct: 4 RP--RLCHLRKGPQG-YGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNV 60
Query: 482 VGLKDKELLEAMEKGGSVLTLTLIP 506
GL+ E++ +++ L ++
Sbjct: 61 EGLRHAEVVASIKAREDEARLLVVG 85
Score = 63.1 bits (154), Expect = 8e-13
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 348 RELVLCKDASGL-IGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNM 406
R L K G L G ++ V+ GSPA+ GLR D+++ +NG+ V G
Sbjct: 6 RLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRH 65
Query: 407 KQVHKILKAAPVNNIRVVIRDR 428
+V +KA + R+++
Sbjct: 66 AEVVASIKARE-DEARLLVVGP 86
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3,
human, structural genomics, structural GE consortium,
SGC, signaling protein; 2.39A {Homo sapiens} SCOP:
b.36.1.1
Length = 91
Score = 63.9 bits (156), Expect = 5e-13
Identities = 18/83 (21%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 347 IRELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNM 406
R++ + + G G +C + V V V+ G PA GL+ D +L +N V +
Sbjct: 4 YRQITIPRGKDGF-GFTICC-DSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKC 61
Query: 407 KQVHKILKAAPVNNIRVVIRDRP 429
++ +++ P + I +++
Sbjct: 62 VELAHEIRSCP-SEIILLVWRMV 83
Score = 63.1 bits (154), Expect = 9e-13
Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 4/77 (5%)
Query: 432 RTVTLHRDSSGHFGF--HFNKGQIVSLV-KDSSAARNGLLVNHNILEVNGANVVGLKDKE 488
R +T+ R G FGF + V V A R GL +L++N V K E
Sbjct: 5 RQITIPRGKDG-FGFTICCDSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVE 63
Query: 489 LLEAMEKGGSVLTLTLI 505
L + S + L +
Sbjct: 64 LAHEIRSCPSEIILLVW 80
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein,
abnormal nuclear; zinc-finger, beta barrel, VWA domain,
gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP:
a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Length = 926
Score = 70.6 bits (172), Expect = 5e-13
Identities = 39/234 (16%), Positives = 56/234 (23%), Gaps = 13/234 (5%)
Query: 45 SHTSPNAYNNPPSPYHSANPPPYYQHPSVPSHPSVPTFPSAPIYPSAPPQESHSPYYYSD 104
SH Y Y P +P S P S
Sbjct: 2 SHHKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQF 61
Query: 105 IRANVPTGGSPVPSYPQGSYPSNPYQAQNSYPSVPNQPQAPNTYPSMPNQLQAPN----- 159
+ + + + P+ QPQ P + Q Q P
Sbjct: 62 LTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAY 121
Query: 160 GFYPLTSSQQASQASLPYPINPLASNKP-----SAPQPPAYSVQPSHNTAYPTAPLVPST 214
G Q + YPI+ L P + P PP + P
Sbjct: 122 GQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSNASPDY 181
Query: 215 IATAPSAPPANIEDATRSTHPTTATAPSVPPAIHDATRSTPSPIIAPSVPPTNR 268
I + +A P N +S P + P H P P+ + R
Sbjct: 182 IRSTLNAVPKNSSLLKKSKLPFGLV---IRPYQHLYDDIDPPPLNEDGLIVRCR 232
Score = 57.9 bits (139), Expect = 6e-09
Identities = 21/169 (12%), Positives = 36/169 (21%), Gaps = 2/169 (1%)
Query: 118 SYPQGSYPSNPYQAQNSYPSVPNQPQAPNTYPSMPNQLQAPNGFYPLTSSQQASQASLPY 177
+ + YP Q + P Q A P P G +
Sbjct: 3 HHKKRVYPQAQLQY--GQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQ 60
Query: 178 PINPLASNKPSAPQPPAYSVQPSHNTAYPTAPLVPSTIATAPSAPPANIEDATRSTHPTT 237
+ P S+ H P P ++ +
Sbjct: 61 FLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPA 120
Query: 238 ATAPSVPPAIHDATRSTPSPIIAPSVPPTNRDTIRSALVPLYPSLDNYM 286
PS + + PI + P + PL + +
Sbjct: 121 YGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERML 169
Score = 46.7 bits (110), Expect = 2e-05
Identities = 21/170 (12%), Positives = 35/170 (20%), Gaps = 6/170 (3%)
Query: 27 QTTSSSFSSPPPPVYQTSSHTSPNAYNNPPSPYHSANPPPYYQHPSVPSHPSVPTFPSAP 86
F +P + + N+ P Y P VP P
Sbjct: 55 SMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMG---TPLQQ 111
Query: 87 IYPSAPPQESHSPYYYSDIRANVPTGGSPVPSYPQGSYPSNPYQAQNSYPSVPNQPQ-AP 145
P P+ + P +P + P
Sbjct: 112 QQQPMAAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVP 171
Query: 146 NTYPSMPNQLQAPNGFYPLTSSQQASQASLPYP--INPLASNKPSAPQPP 193
+ + +S ++ LP+ I P PP
Sbjct: 172 SELSNASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPP 221
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3,
microtubule associated serine/threonine kinase 3, PDZ
domain, structural genomics; 1.20A {Homo sapiens} PDB:
2w7r_A 2kqf_A 2kyl_A 3ps4_A
Length = 99
Score = 64.0 bits (156), Expect = 5e-13
Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 15/91 (16%)
Query: 430 LERTVTLHRDSSGHFGFH-------------FNKGQIVSLVKDSSAA-RNGLLVNHNILE 475
+ + +H +GF + +V V+D S A GL I
Sbjct: 2 MRPPIVIHSSGKK-YGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAGLRAGDLITH 60
Query: 476 VNGANVVGLKDKELLEAMEKGGSVLTLTLIP 506
+NG +V+GL +++E + K G+ ++L
Sbjct: 61 INGESVLGLVHMDVVELLLKSGNKISLRTTA 91
Score = 60.5 bits (147), Expect = 9e-12
Identities = 27/91 (29%), Positives = 35/91 (38%), Gaps = 10/91 (10%)
Query: 348 RELVLCKDASG----LIGLRV-----CAINEGVFVCLVERGSPASLVGLRFGDQILSING 398
+V+ L +RV V VE GSPA GLR GD I ING
Sbjct: 4 PPIVIHSSGKKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAGLRAGDLITHING 63
Query: 399 ETVAGYNMKQVHKILKAAPVNNIRVVIRDRP 429
E+V G V ++L + N I +
Sbjct: 64 ESVLGLVHMDVVELLLKSG-NKISLRTTALE 93
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere,
structural protein; NMR {Homo sapiens} SCOP: b.36.1.1
PDB: 1wjl_A
Length = 85
Score = 63.0 bits (154), Expect = 9e-13
Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 368 NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRD 427
N + + + GS A+ L GD +++I+G + +K+A N+ + ++
Sbjct: 24 NMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSAS-YNLSLTLQK 82
Query: 428 RP 429
Sbjct: 83 SK 84
Score = 52.3 bits (126), Expect = 4e-09
Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 9/82 (10%)
Query: 430 LERTVTLHRDSSGHFGFH------FNKGQIVSLV-KDSSAARNGLLVNHNILEVNGANVV 482
+ +VTL +GF FN +S + S AA++ L ++ ++G N
Sbjct: 1 MAYSVTLTGPGP--WGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTD 58
Query: 483 GLKDKELLEAMEKGGSVLTLTL 504
+ E ++ L+LTL
Sbjct: 59 TMTHLEAQNKIKSASYNLSLTL 80
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative
splicing, cell junction, cell membrane, lipoprotein,
membrane, palmitate, phosphoprotein; 1.35A {Homo
sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Length = 104
Score = 63.5 bits (155), Expect = 9e-13
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 3/95 (3%)
Query: 337 GLKKAYVTNGIRELVLCKDASGL-IGLRVCAINEGVFVCLVERGSPASLVG-LRFGDQIL 394
GL + + R +V+ + ++GL + EG+F+ + G PA L G LR GDQIL
Sbjct: 2 GLGEEDIPREPRRIVIHRGSTGLGFNIVGGEXGEGIFISFILAGGPADLSGELRKGDQIL 61
Query: 395 SINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRP 429
S+NG + + +Q LK A + ++ + +P
Sbjct: 62 SVNGVDLRNASHEQAAIALKNAG-QTVTIIAQYKP 95
Score = 58.1 bits (141), Expect = 7e-11
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 9/86 (10%)
Query: 427 DRPLE-RTVTLHRDSSGHFGFH-----FNKGQIVSLV-KDSSAARNGLL-VNHNILEVNG 478
D P E R + +HR S+G GF+ +G +S + A +G L IL VNG
Sbjct: 7 DIPREPRRIVIHRGSTG-LGFNIVGGEXGEGIFISFILAGGPADLSGELRKGDQILSVNG 65
Query: 479 ANVVGLKDKELLEAMEKGGSVLTLTL 504
++ ++ A++ G +T+
Sbjct: 66 VDLRNASHEQAAIALKNAGQTVTIIA 91
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding,
RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A
{Homo sapiens}
Length = 109
Score = 63.3 bits (154), Expect = 1e-12
Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 3/102 (2%)
Query: 332 SSSGSGLKKAYVTNGIRELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGD 391
S G + Y + R + + L G + N V V ++ AS+ G R GD
Sbjct: 9 SGVDLGTENLYFQSMPRSIRFTAEEGDL-GFTLRG-NAPVQVHFLDPYCSASVAGAREGD 66
Query: 392 QILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERT 433
I+SI + +V K+LK+ + I + + L+
Sbjct: 67 YIVSIQLVDCKWLTLSEVMKLLKSFGEDEIEMKVVS-LLDEV 107
Score = 54.4 bits (131), Expect = 2e-09
Identities = 12/82 (14%), Positives = 31/82 (37%), Gaps = 5/82 (6%)
Query: 428 RPLERTVTLHRDSSGHFGF--HFNKGQIVSLV-KDSSAARNGLLVNHNILEVNGANVVGL 484
+ + R++ + GF N V + SA+ G I+ + + L
Sbjct: 21 QSMPRSIRFTAEEGD-LGFTLRGNAPVQVHFLDPYCSASVAGAREGDYIVSIQLVDCKWL 79
Query: 485 KDKELLEAMEKGGS-VLTLTLI 505
E+++ ++ G + + ++
Sbjct: 80 TLSEVMKLLKSFGEDEIEMKVV 101
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain,
ptpase, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 119
Score = 63.7 bits (155), Expect = 1e-12
Identities = 32/118 (27%), Positives = 49/118 (41%), Gaps = 8/118 (6%)
Query: 333 SSGSGLKKAYVTNGIRELVLCKDASGLIGLRV---CAINEGVFVCLVERGSPASLV--GL 387
SSGS + + + + D +G G V V V V G+PA L L
Sbjct: 2 SSGSSGNGGIPHDNLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRL 61
Query: 388 RFGDQILSINGETVAGYNMKQVHKILKAA---PVNNIRVVIRDRPLERTVTLHRDSSG 442
GDQ++ ING +A + QV +KA+ + +++R + V SSG
Sbjct: 62 NEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVRPNAVYDVVEESGPSSG 119
Score = 47.9 bits (114), Expect = 4e-07
Identities = 14/83 (16%), Positives = 31/83 (37%), Gaps = 9/83 (10%)
Query: 432 RTVTLHRDSSGHFGFH------FNKGQIVSLVKDSSAA---RNGLLVNHNILEVNGANVV 482
+ + D +G FGF+ IVS V + A L ++ +NG ++
Sbjct: 17 VLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIA 76
Query: 483 GLKDKELLEAMEKGGSVLTLTLI 505
+++ ++ + L+
Sbjct: 77 EHTHDQVVLFIKASCERHSGELM 99
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium channel
3 chimera; PDZ domain, PDZ binding, GIRK3 regulation,
early endosomes; 1.68A {Rattus norvegicus} PDB: 3qdo_A
3qgl_A
Length = 107
Score = 63.2 bits (154), Expect = 1e-12
Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 20/97 (20%)
Query: 429 PLERTVTLHRDSSGHFGFH------------------FNKGQIVSLV-KDSSAARNGLLV 469
R V + + SG +GF+ + Q VS V +A R G+
Sbjct: 5 GSPRVVRIVKSESG-YGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRK 63
Query: 470 NHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIP 506
ILEVNG NV G K++++ + G L LT++
Sbjct: 64 GDRILEVNGVNVEGATHKQVVDLIRAGEKELILTVLS 100
Score = 62.0 bits (151), Expect = 3e-12
Identities = 24/101 (23%), Positives = 36/101 (35%), Gaps = 15/101 (14%)
Query: 348 RELVLCKDASGL--------------IGLRVCAINEGVFVCLVERGSPASLVGLRFGDQI 393
R + + K SG + V V G A G+R GD+I
Sbjct: 8 RVVRIVKSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGDRI 67
Query: 394 LSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTV 434
L +NG V G KQV +++A + + + E V
Sbjct: 68 LEVNGVNVEGATHKQVVDLIRAGE-KELILTVLSVESESKV 107
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog,
phosphorylation, signaling PR LIM domain, PDZ domain;
1.5A {Homo sapiens}
Length = 88
Score = 61.9 bits (151), Expect = 2e-12
Identities = 12/59 (20%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 368 NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIR 426
N + + ++ G A+ +R GD +LSI+G G + +K ++ + ++
Sbjct: 26 NMPLTISSLKDGGKAAQANVRIGDVVLSIDGINAQGMTHLEAQNKIKGCT-GSLNMTLQ 83
Score = 50.0 bits (120), Expect = 3e-08
Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 9/81 (11%)
Query: 431 ERTVTLHRDSSGHFGF------HFNKGQIVSLV-KDSSAARNGLLVNHNILEVNGANVVG 483
+V+L + +GF FN +S + AA+ + + +L ++G N G
Sbjct: 4 NYSVSLVGPAP--WGFRLQGGKDFNMPLTISSLKDGGKAAQANVRIGDVVLSIDGINAQG 61
Query: 484 LKDKELLEAMEKGGSVLTLTL 504
+ E ++ L +TL
Sbjct: 62 MTHLEAQNKIKGCTGSLNMTL 82
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3,
DLG3-human presynaptic protein, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 113
Score = 62.8 bits (153), Expect = 2e-12
Identities = 35/113 (30%), Positives = 50/113 (44%), Gaps = 4/113 (3%)
Query: 333 SSGSGLKKAYVTNGIRELVLCKDASGL-IGLRVCAINEGVFVCLVERGSPASLVG-LRFG 390
SSGS + R+++L K ++GL + EG+FV + G PA L G LR G
Sbjct: 2 SSGSSGRPGGDAREPRKIILHKGSTGLGFNIVGGEDGEGIFVSFILAGGPADLSGELRRG 61
Query: 391 DQILSINGETVAGYNMKQVHKILKAAPVNNIR-VVIRDRPLERTVTLHRDSSG 442
D+ILS+NG + +Q LK A ++ V SSG
Sbjct: 62 DRILSVNGVNLRNATHEQAAAALKRAG-QSVTIVAQYRPEEYSRFESSGPSSG 113
Score = 52.0 bits (125), Expect = 2e-08
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Query: 432 RTVTLHRDSSGHFGFHF-----NKGQIVSLV-KDSSAARNGLL-VNHNILEVNGANVVGL 484
R + LH+ S+G GF+ +G VS + A +G L IL VNG N+
Sbjct: 17 RKIILHKGSTG-LGFNIVGGEDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNA 75
Query: 485 KDKELLEAMEKGGSVLTLTL 504
++ A+++ G +T+
Sbjct: 76 THEQAAAALKRAGQSVTIVA 95
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein;
PDZ domain, cytoplasm, membrane, polymorphism, protein
binding; 2.70A {Homo sapiens}
Length = 104
Score = 62.5 bits (152), Expect = 2e-12
Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 10/95 (10%)
Query: 333 SSGSGLKKAYVTNGIRELVLCKDASG-----LIGLRV-----CAINEGVFVCLVERGSPA 382
SSGS + + + + + K + + R C+ +C ++ SPA
Sbjct: 2 SSGSSGLSDFSWSQRKLVTVEKQDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPA 61
Query: 383 SLVGLRFGDQILSINGETVAGYNMKQVHKILKAAP 417
GL+ GD + +ING + G+ KQV +++++
Sbjct: 62 HCAGLQAGDVLANINGVSTEGFTYKQVVDLIRSSG 96
Score = 60.9 bits (148), Expect = 7e-12
Identities = 17/91 (18%), Positives = 37/91 (40%), Gaps = 14/91 (15%)
Query: 429 PLERTVTLHRDSSGHFGFH-------------FNKGQIVSLV-KDSSAARNGLLVNHNIL 474
+ VT+ + + FGF ++ + +DS A GL +
Sbjct: 14 SQRKLVTVEKQDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAGLQAGDVLA 73
Query: 475 EVNGANVVGLKDKELLEAMEKGGSVLTLTLI 505
+NG + G K++++ + G++LT+ +
Sbjct: 74 NINGVSTEGFTYKQVVDLIRSSGNLLTIETL 104
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 104
Score = 62.4 bits (152), Expect = 3e-12
Identities = 28/100 (28%), Positives = 41/100 (41%), Gaps = 3/100 (3%)
Query: 333 SSGSGLKKAYVTNGIRELVLCKDASGLIGLRVC---AINEGVFVCLVERGSPASLVGLRF 389
SSGS R + L K +G + A G+F+ V S A GL+
Sbjct: 2 SSGSSGNNELTQFLPRIVTLKKPPGAQLGFNIRGGKASQLGIFISKVIPDSDAHRAGLQE 61
Query: 390 GDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRP 429
GDQ+L++N + +ILK A ++RV P
Sbjct: 62 GDQVLAVNDVDFQDIEHSKAVEILKTAREISMRVRFFSGP 101
Score = 55.1 bits (133), Expect = 1e-09
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 428 RPLERTVTLHRDSSGHFGF------HFNKGQIVSLV-KDSSAARNGLLVNHNILEVNGAN 480
+ L R VTL + GF G +S V DS A R GL +L VN +
Sbjct: 13 QFLPRIVTLKKPPGAQLGFNIRGGKASQLGIFISKVIPDSDAHRAGLQEGDQVLAVNDVD 72
Query: 481 VVGLKDKELLEAMEKGGSVLTLTL 504
++ + +E + K +++ +
Sbjct: 73 FQDIEHSKAVEIL-KTAREISMRV 95
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 94
Score = 61.9 bits (151), Expect = 3e-12
Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 368 NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRD 427
+ + + V GS A+L L GD I +INGE+ + +K +++ + +
Sbjct: 31 SAPLTISRVHAGSKAALAALCPGDLIQAINGESTELMTHLEAQNRIKGCH-DHLTLSVSS 89
Query: 428 RP 429
P
Sbjct: 90 GP 91
Score = 54.2 bits (131), Expect = 1e-09
Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 9/83 (10%)
Query: 429 PLERTVTLHRDSSGHFGFH------FNKGQIVSLV-KDSSAARNGLLVNHNILEVNGANV 481
+ +VTL S +GF F+ +S V S AA L I +NG +
Sbjct: 7 GMPHSVTLRGPSP--WGFRLVGGRDFSAPLTISRVHAGSKAALAALCPGDLIQAINGEST 64
Query: 482 VGLKDKELLEAMEKGGSVLTLTL 504
+ E ++ LTL++
Sbjct: 65 ELMTHLEAQNRIKGCHDHLTLSV 87
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion;
1.99A {Homo sapiens} PDB: 3shu_A
Length = 124
Score = 62.9 bits (153), Expect = 3e-12
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Query: 348 RELVLCKDASGLIGLRVCAINE-GVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNM 406
+LV + + GLR+ N+ G+FV V SPA+ GL GDQIL +N
Sbjct: 30 MKLVKFRKGDSV-GLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIR 88
Query: 407 KQVHKILKAAP-VNNIRVVIRDRP 429
++ L P + ++ + +
Sbjct: 89 EEAVLFLLDLPKGEEVTILAQKKK 112
Score = 46.3 bits (110), Expect = 1e-06
Identities = 19/96 (19%), Positives = 39/96 (40%), Gaps = 10/96 (10%)
Query: 428 RPLERTVTLHRDSSGHFGFHFNKGQ-----IVSLVKDSSAARNGLLVNHNILEVNGANVV 482
RP + V + S G G + +++DS AA+ GL IL VN +
Sbjct: 27 RPSMKLVKFRKGDS--VGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFT 84
Query: 483 GLKDKELLEAMEKGGSVLTLTLI---PTSMYQHMMK 515
+ +E + + +T++ +Y+ +++
Sbjct: 85 NIIREEAVLFLLDLPKGEEVTILAQKKKDVYRRIVE 120
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two
alpha-helices, protein binding; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 91
Score = 61.6 bits (150), Expect = 3e-12
Identities = 18/86 (20%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Query: 347 IRELVLCKDASGL---IGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAG 403
+ ++ L KD+ + + +GV+V + P L GL+ D++L +N
Sbjct: 7 LHKVTLYKDSGMEDFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRD 66
Query: 404 YNMKQVHKILKAAPVNNIRVVIRDRP 429
++ V ++ + N + +VI P
Sbjct: 67 FDCCLVVPLIAESG-NKLDLVISRNP 91
Score = 59.3 bits (144), Expect = 2e-11
Identities = 19/86 (22%), Positives = 33/86 (38%), Gaps = 8/86 (9%)
Query: 427 DRPLE-RTVTLHRDSSGH-FGFHFNKGQ------IVSLVKDSSAARNGLLVNHNILEVNG 478
P+E VTL++DS FGF G + ++ GL +L+VN
Sbjct: 2 PTPVELHKVTLYKDSGMEDFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNH 61
Query: 479 ANVVGLKDKELLEAMEKGGSVLTLTL 504
++ + + G+ L L +
Sbjct: 62 VRTRDFDCCLVVPLIAESGNKLDLVI 87
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1752
Score = 68.6 bits (167), Expect = 3e-12
Identities = 54/253 (21%), Positives = 90/253 (35%), Gaps = 19/253 (7%)
Query: 23 YFSKQTTSSSFSSPPPPVYQTSSHTSPNAYNNPPSPYHSANPPPYYQHPSVPSHPSVPTF 82
Y S F P + + Y Y+ P + S +
Sbjct: 1486 YERSPMVDSGFVGSPDAAAFSPLVQGGSEGREGFGDYGLLGAASPYKGVQSPGYTSPFSS 1545
Query: 83 PSAPIYPSAPPQESHSPYYYSDIRANVPTGGSPVPSYPQGSYPSNPYQAQNS---YPSVP 139
+P Y P S S YS A +P+ S P+ P S P++P + S P+ P
Sbjct: 1546 AMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYS-PTSPSYSPTSPSYSPTSP 1604
Query: 140 N-QPQAPNTYPSMPNQLQAPNGFYPLTS------SQQASQASLPY-PINPLASNKPSAPQ 191
+ +P+ P+ P+ + P TS S S S Y P +P S +
Sbjct: 1605 SYSATSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1663
Query: 192 PPAYSVQPSHNTAYPTAPLVPSTIATAPSAPPANIEDATRSTHPTTATAPSVPPAIHDAT 251
P + S P+ + PT+P T + P+ + + + + +P+ P +
Sbjct: 1664 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP------S 1717
Query: 252 RSTPSPIIAPSVP 264
S SP +P+ P
Sbjct: 1718 YSPTSPSYSPTSP 1730
Score = 64.3 bits (156), Expect = 7e-11
Identities = 55/207 (26%), Positives = 90/207 (43%), Gaps = 23/207 (11%)
Query: 30 SSSFSSPPPPVYQTSS----HTSPNAYNNPP----SPYHSANPPPYYQHPSVPSH-PSVP 80
+S FSS P Y +S +SP +P SP +S P Y P+ PS+ P+ P
Sbjct: 1540 TSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYS--PTSPSYSPTSP 1597
Query: 81 TF-PSAPIYPSAPPQESH-SPYYYSDIRANVPTGGSPVPSYPQGSYPSNPYQAQNSYPSV 138
++ P++P Y + P S SP Y + PT S P+ P S S Y P+
Sbjct: 1598 SYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS-----PTS 1652
Query: 139 PNQPQAPNTYPSMPNQLQAPNGFYPLTSSQQASQASLPYPINP--LASNKPSAPQPPAYS 196
P+ +Y + Y TS + + P +P ++ +P P+YS
Sbjct: 1653 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1712
Query: 197 VQPSHNTAYPTAPL-VPSTIATAPSAP 222
P+ + PT+P P++ + +P++P
Sbjct: 1713 --PTSPSYSPTSPSYSPTSPSYSPTSP 1737
Score = 53.9 bits (129), Expect = 1e-07
Identities = 47/229 (20%), Positives = 74/229 (32%), Gaps = 19/229 (8%)
Query: 37 PPPVYQTSSHTSPNAYNNPPSPYHSANPPPYYQHPSVPSHPSVPTFPSAPIYPSAPPQES 96
P T SP + +A P Q S P Q
Sbjct: 1478 LPEGAGTPYERSPMVDSGFVGSPDAAAFSPLVQGGSEGREGFGDYGLLGAASPYKGVQ-- 1535
Query: 97 HSPYYYSDIRANVPTGGSPVPSYPQGSYPSNPYQAQNSYPSVPNQPQAPNTYPSMPNQLQ 156
SP Y S + + G S P S P +P+ P+ P+
Sbjct: 1536 -SPGYTSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSP 1594
Query: 157 APNGFYPLTSSQQASQASLPY-PINPLASNKPSAPQPPAYSVQPSHNTAYPTAPLVPSTI 215
+ P +S S S Y P +P S P P+YS P+ + PT+P
Sbjct: 1595 TSPSYSP--TSPSYSATSPSYSPTSPSYS-----PTSPSYS--PTSPSYSPTSP------ 1639
Query: 216 ATAPSAPPANIEDATRSTHPTTATAPSVPPAIHDATRSTPSPIIAPSVP 264
+ +P++P + + S + + S + + S SP +P+ P
Sbjct: 1640 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1688
Score = 52.4 bits (125), Expect = 3e-07
Identities = 37/131 (28%), Positives = 52/131 (39%), Gaps = 5/131 (3%)
Query: 29 TSSSFSSPPPPVYQTSSHTSPNAYN-NPPSPYHSANPPPYYQHPSVPSHPSVPTFPSAPI 87
TS S+S P TS SP + + +P SP +S P Y S S P++P
Sbjct: 1616 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1675
Query: 88 Y-PSAPPQESHSPYYY---SDIRANVPTGGSPVPSYPQGSYPSNPYQAQNSYPSVPNQPQ 143
Y P++P SP Y P+ PSY S +P S S P
Sbjct: 1676 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1735
Query: 144 APNTYPSMPNQ 154
+P+ P+ P+
Sbjct: 1736 SPSYSPTSPSY 1746
Score = 46.6 bits (110), Expect = 2e-05
Identities = 38/121 (31%), Positives = 56/121 (46%), Gaps = 22/121 (18%)
Query: 29 TSSSFSSPPPPVYQTSSHTSPNA-YNNPPSPYHSANPPPYYQHPSVPSHPSVPTFPSAPI 87
TS S+S P TS SP + +P SP +S P Y P+ PS+ P++P
Sbjct: 1651 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--SPTSPSYS-----PTSPS 1703
Query: 88 Y-PSAPPQESHSPYYYSDIRANVPTGGSPVPSYPQGSYPSNPYQAQNSYPSVPNQ-PQAP 145
Y P++P SP Y PT S P+ P S P++P + P+ P+ P +P
Sbjct: 1704 YSPTSPSYSPTSPSY-------SPTSPSYSPTSPSYS-PTSP----SYSPTSPSYSPTSP 1751
Query: 146 N 146
+
Sbjct: 1752 S 1752
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ
domain, cytoskeleton, actin binding, structural
genomics; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 62.0 bits (151), Expect = 3e-12
Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 3/77 (3%)
Query: 368 NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIR- 426
N+ + + + GS A+ L GD IL+I+G +KAA + + I
Sbjct: 28 NQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAAS-YQLCLKIDR 86
Query: 427 -DRPLERTVTLHRDSSG 442
+ L SSG
Sbjct: 87 AETRLWSPQVSSGPSSG 103
Score = 47.7 bits (114), Expect = 3e-07
Identities = 15/81 (18%), Positives = 30/81 (37%), Gaps = 9/81 (11%)
Query: 431 ERTVTLHRDSSGHFGFH------FNKGQIVSLV-KDSSAARNGLLVNHNILEVNGANVVG 483
V L + +GF FN+ +++ + S AA L IL ++G
Sbjct: 6 SGNVVLPGPAP--WGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTES 63
Query: 484 LKDKELLEAMEKGGSVLTLTL 504
+ + + ++ L L +
Sbjct: 64 MTHADAQDRIKAASYQLCLKI 84
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics,
structural genomics consort metal binding protein; 1.70A
{Homo sapiens} PDB: 3pdv_A
Length = 87
Score = 61.1 bits (149), Expect = 4e-12
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 368 NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIR 426
+ + V V A LR GD I++INGE+ G + ++ +P + +R+ +
Sbjct: 25 HTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGMLHAEAQSKIRQSP-SPLRLQLD 82
Score = 47.7 bits (114), Expect = 2e-07
Identities = 18/81 (22%), Positives = 31/81 (38%), Gaps = 9/81 (11%)
Query: 431 ERTVTLHRDSSGHFGF------HFNKGQIVSLV-KDSSAARNGLLVNHNILEVNGANVVG 483
TV + + +GF F+ +V+ V + A L I+ +NG + G
Sbjct: 3 ALTVDVAGPAP--WGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEG 60
Query: 484 LKDKELLEAMEKGGSVLTLTL 504
+ E + + S L L L
Sbjct: 61 MLHAEAQSKIRQSPSPLRLQL 81
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural
genomics consortium, SGC; 1.11A {Homo sapiens}
Length = 89
Score = 61.2 bits (149), Expect = 4e-12
Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 368 NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRD 427
N + + + G A+ G+ GD +LSI+GE + ++A + + +
Sbjct: 26 NVPLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGSLTHIEAQNKIRACG-ERLSLGLS- 83
Query: 428 RPLER 432
R +
Sbjct: 84 RAITS 88
Score = 49.2 bits (118), Expect = 6e-08
Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 9/81 (11%)
Query: 431 ERTVTLHRDSSGHFGFH------FNKGQIVSLV-KDSSAARNGLLVNHNILEVNGANVVG 483
V L + +GF FN +S + AA+ G+ V +L ++G N
Sbjct: 4 SFKVVLEGPAP--WGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGS 61
Query: 484 LKDKELLEAMEKGGSVLTLTL 504
L E + G L+L L
Sbjct: 62 LTHIEAQNKIRACGERLSLGL 82
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation,
leucine-rich repeat, alternative splicing, cytoplasm,
circletail, coiled coil; 1.30A {Homo sapiens}
Length = 97
Score = 60.8 bits (148), Expect = 6e-12
Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 12/97 (12%)
Query: 347 IRELVLCKDASGLIGLRV---------CAINEGVFVCLVERGSPASLVGLRFGDQILSIN 397
L + + GL G+ + +EG+F+ V PA+ G+R GD++L +N
Sbjct: 4 ELTLTILRQTGGL-GISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVN 62
Query: 398 GETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTV 434
G + G + + L+ A +++ + R E +V
Sbjct: 63 GVALQGAEHHEAVEALRGAG-TAVQMRVW-RERETSV 97
Score = 58.4 bits (142), Expect = 5e-11
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 14/87 (16%)
Query: 431 ERTVTLHRDSSGHFGFHF------------NKGQIVS-LVKDSSAARNGLLVNHNILEVN 477
E T+T+ R + G G ++G +S + ++ AAR G+ V +LEVN
Sbjct: 4 ELTLTILRQTGG-LGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVN 62
Query: 478 GANVVGLKDKELLEAMEKGGSVLTLTL 504
G + G + E +EA+ G+ + + +
Sbjct: 63 GVALQGAEHHEAVEALRGAGTAVQMRV 89
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 94
Score = 60.4 bits (147), Expect = 1e-11
Identities = 12/59 (20%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 368 NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIR 426
+ + V V A LR GD I++ING++ + ++ + + +R+ +
Sbjct: 29 HTPIIVTKVTERGKAEAADLRPGDIIVAINGQSAENMLHAEAQSKIRQSA-SPLRLQLD 86
Score = 46.5 bits (111), Expect = 8e-07
Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 9/81 (11%)
Query: 431 ERTVTLHRDSSGHFGFH------FNKGQIVSLV-KDSSAARNGLLVNHNILEVNGANVVG 483
TV + + +GF F+ IV+ V + A L I+ +NG +
Sbjct: 7 GLTVDVAGPAP--WGFRISGGRDFHTPIIVTKVTERGKAEAADLRPGDIIVAINGQSAEN 64
Query: 484 LKDKELLEAMEKGGSVLTLTL 504
+ E + + S L L L
Sbjct: 65 MLHAEAQSKIRQSASPLRLQL 85
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; Cys Ser mutant, S genomics consortium, SGC,
transferase; 2.00A {Homo sapiens}
Length = 90
Score = 60.0 bits (146), Expect = 1e-11
Identities = 19/89 (21%), Positives = 44/89 (49%), Gaps = 6/89 (6%)
Query: 347 IRELVLCKDASGLIGLRVCA---INEGVFVCLVERGSPASLVG-LRFGDQILSINGETVA 402
+++ L + +G G R+ E +++ + A G LR GD+++S++G V
Sbjct: 3 EQDIFLWRKETGF-GFRILGGNEPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVI 61
Query: 403 GYNMKQVHKILKAAP-VNNIRVVIRDRPL 430
G + + V ++++ A ++ + +R L
Sbjct: 62 GKSHQLVVQLMQQAAKQGHVNLTVRQTRL 90
Score = 53.8 bits (130), Expect = 1e-09
Identities = 17/84 (20%), Positives = 37/84 (44%), Gaps = 9/84 (10%)
Query: 430 LERTVTLHRDSSGHFGF------HFNKGQIVS-LVKDSSAARNGLL-VNHNILEVNGANV 481
+E+ + L R +G FGF + + +V +A +G L ++ V+G V
Sbjct: 2 MEQDIFLWRKETG-FGFRILGGNEPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPV 60
Query: 482 VGLKDKELLEAMEKGGSVLTLTLI 505
+G + +++ M++ + L
Sbjct: 61 IGKSHQLVVQLMQQAAKQGHVNLT 84
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 60.4 bits (147), Expect = 1e-11
Identities = 25/106 (23%), Positives = 47/106 (44%), Gaps = 11/106 (10%)
Query: 333 SSGSGLKKAYVTNGIRELVLCKDASGLIGLRV---------CAINEGVFVCLVERGSPAS 383
SSGS + A + L + + GL G+ + +EG+F+ V PA+
Sbjct: 2 SSGSSGEPARIEEEELTLTILRQTGGL-GISIAGGKGSTPYKGDDEGIFISRVSEEGPAA 60
Query: 384 LVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRP 429
G+R GD++L +NG + G + + L+ A +++ +
Sbjct: 61 RAGVRVGDKLLEVNGVALQGAEHHEAVEALRGAG-TAVQMRVWRES 105
Score = 57.0 bits (138), Expect = 2e-10
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 14/87 (16%)
Query: 431 ERTVTLHRDSSGHFGFH------------FNKGQIVSLV-KDSSAARNGLLVNHNILEVN 477
E T+T+ R + G G ++G +S V ++ AAR G+ V +LEVN
Sbjct: 16 ELTLTILRQTGG-LGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVN 74
Query: 478 GANVVGLKDKELLEAMEKGGSVLTLTL 504
G + G + E +EA+ G+ + + +
Sbjct: 75 GVALQGAEHHEAVEALRGAGTAVQMRV 101
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics,
structural genomics consort unknown function; HET: PG4;
1.50A {Homo sapiens} PDB: 2v1w_A*
Length = 91
Score = 59.7 bits (145), Expect = 1e-11
Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 368 NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIR 426
+ + + V GS A+L L GD I +I+GE + + +K +N+ + +
Sbjct: 26 EQPLAISRVTPGSKAALANLCIGDVITAIDGENTSNMTHLEAQNRIKGCT-DNLTLTVA 83
Score = 48.5 bits (116), Expect = 1e-07
Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 7/79 (8%)
Query: 433 TVTLHRDSSGHFGF------HFNKGQIVSLV-KDSSAARNGLLVNHNILEVNGANVVGLK 485
T + G +GF F + +S V S AA L + I ++G N +
Sbjct: 4 TQQIDLQGPGPWGFRLVGGKDFEQPLAISRVTPGSKAALANLCIGDVITAIDGENTSNMT 63
Query: 486 DKELLEAMEKGGSVLTLTL 504
E ++ LTLT+
Sbjct: 64 HLEAQNRIKGCTDNLTLTV 82
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane
protein; NMR {Homo sapiens} PDB: 2ev8_A
Length = 97
Score = 60.1 bits (146), Expect = 1e-11
Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
Query: 432 RTVTLHRDSSGHFGFHFNKGQ-----IVSLVKDSSAARNGLL-VNHNILEVNGANVVGLK 485
R + + + G + + ++ R G L V ILE+NG NV
Sbjct: 14 RLIQFEKVTEEPMGICLKLNEKQSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHS 73
Query: 486 DKELLEAMEKGGSVLTLTLIPTS 508
+L +AM++ +++L +IP
Sbjct: 74 VDQLQKAMKETKGMISLKVIPNQ 96
Score = 51.6 bits (124), Expect = 1e-08
Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 3/82 (3%)
Query: 346 GIRELVLCKDASGLIGLRVCAINEG-VFVCLVERGSPASLVG-LRFGDQILSINGETVAG 403
+R + K +G+ + + V + G G L GD+IL ING V
Sbjct: 12 MVRLIQFEKVTEEPMGICLKLNEKQSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTN 71
Query: 404 YNMKQVHKILKAAPVNNIRVVI 425
+++ Q+ K +K I + +
Sbjct: 72 HSVDQLQKAMKETK-GMISLKV 92
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 114
Score = 60.4 bits (146), Expect = 2e-11
Identities = 26/116 (22%), Positives = 44/116 (37%), Gaps = 9/116 (7%)
Query: 333 SSGSGLKKAYVTNGIRELVLCKDASGLI--GLRVCAINE----GVFVCLVERGSPASLVG 386
SSGS + + + + K + G + ++ E ++V V+ AS G
Sbjct: 2 SSGSSGEIEICPKVTQSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKG 61
Query: 387 LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSSG 442
L+ GD+IL IN N + L + +++R P SSG
Sbjct: 62 LKAGDEILEINNRAADALNSSMLKDFLSQPSLG---LLVRTYPELEEGVESGPSSG 114
Score = 47.3 bits (112), Expect = 6e-07
Identities = 15/85 (17%), Positives = 32/85 (37%), Gaps = 10/85 (11%)
Query: 432 RTVTLHRDSSGHFGFHFN---------KGQIVSLVK-DSSAARNGLLVNHNILEVNGANV 481
+++ + + + + F+ + V+ VK A++ GL ILE+N
Sbjct: 17 QSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKGLKAGDEILEINNRAA 76
Query: 482 VGLKDKELLEAMEKGGSVLTLTLIP 506
L L + + + L + P
Sbjct: 77 DALNSSMLKDFLSQPSLGLLVRTYP 101
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 101
Score = 59.3 bits (144), Expect = 2e-11
Identities = 33/100 (33%), Positives = 45/100 (45%), Gaps = 9/100 (9%)
Query: 333 SSGSGLKKAYVTNGIRELVLCKDASGLIGLRVC---AINEGVFVCLVERGSPASLVGLRF 389
SSGS + V+ L K GL G + G++V LVE GS A GLR
Sbjct: 2 SSGSSGEVRLVS-----LRRAKAHEGL-GFSIRGGSEHGVGIYVSLVEPGSLAEKEGLRV 55
Query: 390 GDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRP 429
GDQIL +N +++A + K LK + + V R
Sbjct: 56 GDQILRVNDKSLARVTHAEAVKALKGSKKLVLSVYSAGRI 95
Score = 50.8 bits (122), Expect = 3e-08
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 8/79 (10%)
Query: 432 RTVTLHRDSSGH-FGFH------FNKGQIVSLV-KDSSAARNGLLVNHNILEVNGANVVG 483
R V+L R + GF G VSLV S A + GL V IL VN ++
Sbjct: 10 RLVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKEGLRVGDQILRVNDKSLAR 69
Query: 484 LKDKELLEAMEKGGSVLTL 502
+ E ++A++ ++
Sbjct: 70 VTHAEAVKALKGSKKLVLS 88
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus
norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A
3o5n_A*
Length = 109
Score = 59.8 bits (145), Expect = 2e-11
Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 19/101 (18%)
Query: 429 PLERTVTLHRDSSGHFGFH------------------FNKGQIVSLV-KDSSAARNGLLV 469
E+TV L + S FGF F Q + V + A R GL +
Sbjct: 6 IKEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRM 65
Query: 470 NHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPTSMY 510
++EVNG NVV + ++++ + +GG+ L + ++ + +
Sbjct: 66 GDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTRH 106
Score = 56.0 bits (135), Expect = 5e-10
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 370 GVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAP-VNNIRVVIRDR 428
++ V+ G A GLR GD ++ +NG+ V +QV +++ ++VV+ R
Sbjct: 46 LQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTR 105
Query: 429 PLE 431
+
Sbjct: 106 HPD 108
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor
clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Length = 88
Score = 58.9 bits (143), Expect = 2e-11
Identities = 15/81 (18%), Positives = 32/81 (39%), Gaps = 6/81 (7%)
Query: 432 RTVTLHRDSSGHFGFHFNKGQ-----IVSLVKDSSAARNGLL-VNHNILEVNGANVVGLK 485
R V +++ G + + ++ R G L V I E+NG +V
Sbjct: 3 RLVQFQKNTDEPMGITLKMNELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQT 62
Query: 486 DKELLEAMEKGGSVLTLTLIP 506
++L + + + +T ++P
Sbjct: 63 VEQLQKMLREMRGSITFKIVP 83
Score = 49.3 bits (118), Expect = 7e-08
Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 3/82 (3%)
Query: 347 IRELVLCKDASGLIGLRVCAINEG-VFVCLVERGSPASLVG-LRFGDQILSINGETVAGY 404
R + K+ +G+ + V + G G L GD+I ING +VA
Sbjct: 2 SRLVQFQKNTDEPMGITLKMNELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQ 61
Query: 405 NMKQVHKILKAAPVNNIRVVIR 426
++Q+ K+L+ +I I
Sbjct: 62 TVEQLQKMLREMR-GSITFKIV 82
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 111
Score = 59.7 bits (145), Expect = 2e-11
Identities = 35/112 (31%), Positives = 50/112 (44%), Gaps = 4/112 (3%)
Query: 333 SSGSGLKKAYVTNGIRELVLCKDASGLIGLRVC-AINEGVFVCLVERGSPASLVG-LRFG 390
SSGS + + E+ L D SGL G + GV V + G A G L+ G
Sbjct: 2 SSGSSGPETVCWGHVEEVELINDGSGL-GFGIVGGKTSGVVVRTIVPGGLADRDGRLQTG 60
Query: 391 DQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSSG 442
D IL I G V G +QV ++L+ N++R+++ P SSG
Sbjct: 61 DHILKIGGTNVQGMTSEQVAQVLRNCG-NSVRMLVARDPAGDISVTSGPSSG 111
Score = 49.7 bits (119), Expect = 8e-08
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 431 ERTVTLHRDSSGHFGFHFNKGQ-----IVSLVKDSSAARNG-LLVNHNILEVNGANVVGL 484
V L D SG GF G+ + ++V A R+G L +IL++ G NV G+
Sbjct: 16 VEEVELINDGSG-LGFGIVGGKTSGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGM 74
Query: 485 KDKELLEAMEKGGSVLTLTL 504
+++ + + G+ + + +
Sbjct: 75 TSEQVAQVLRNCGNSVRMLV 94
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain,
protein, acetylation, cell projection, disease mutation,
membrane; NMR {Homo sapiens}
Length = 128
Score = 60.3 bits (146), Expect = 3e-11
Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 2/94 (2%)
Query: 348 RELVLCKDASGL-IGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNM 406
R + K SG L G F+ V+ SPA GLR D+I+ +NG + G
Sbjct: 11 RLCTMKKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQH 70
Query: 407 KQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDS 440
V ++A + ++++ DR + R
Sbjct: 71 GDVVSAIRAGG-DETKLLVVDRETDEFFKKCRVI 103
Score = 56.0 bits (135), Expect = 7e-10
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 7/81 (8%)
Query: 432 RTVTLHRDSSGHFGFH-----FNKGQIVSLV-KDSSAARNGLLVNHNILEVNGANVVGLK 485
R T+ + SG +GF+ GQ + V DS A +GL I+EVNG + G +
Sbjct: 11 RLCTMKKGPSG-YGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQ 69
Query: 486 DKELLEAMEKGGSVLTLTLIP 506
+++ A+ GG L ++
Sbjct: 70 HGDVVSAIRAGGDETKLLVVD 90
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter
usage, alternative splicing, cell junction, cell
membrane, disease mutation; 1.75A {Homo sapiens}
Length = 88
Score = 58.5 bits (142), Expect = 4e-11
Identities = 24/101 (23%), Positives = 41/101 (40%), Gaps = 17/101 (16%)
Query: 349 ELVLCKDASGL-IGLRVCAINEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNM 406
++L K + GLR+ +FV + R A+ G L GD IL ING ++
Sbjct: 3 GVLLMKSRANEEYGLRLG---SQIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSL 59
Query: 407 KQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSSGHFGFH 447
K+++ + +++V+ RD H H
Sbjct: 60 TDARKLIEKSR-GKLQLVVL-----------RDLEHHHHHH 88
Score = 50.8 bits (122), Expect = 2e-08
Identities = 15/75 (20%), Positives = 29/75 (38%), Gaps = 3/75 (4%)
Query: 433 TVTLHRDSSGH-FGFHFNKGQIVS-LVKDSSAARNG-LLVNHNILEVNGANVVGLKDKEL 489
V L + + +G V + + A ++G L IL++NG + +
Sbjct: 3 GVLLMKSRANEEYGLRLGSQIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDA 62
Query: 490 LEAMEKGGSVLTLTL 504
+ +EK L L +
Sbjct: 63 RKLIEKSRGKLQLVV 77
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 126
Score = 59.6 bits (144), Expect = 4e-11
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 358 GLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAP 417
G + +FV V+ G PA GL GD+I+ +NGE+V G QV +++ +
Sbjct: 50 GGKQRNRLEPMDTIFVKQVKEGGPAFEAGLCTGDRIIKVNGESVIGKTYSQVIALIQNSD 109
Query: 418 VNNIRVVIRDRP 429
+ + + +
Sbjct: 110 -TTLELSVMPKD 120
Score = 49.5 bits (118), Expect = 1e-07
Identities = 24/113 (21%), Positives = 39/113 (34%), Gaps = 36/113 (31%)
Query: 429 PLERTVTLHRDSSGHFGF----------------------------------HFNKGQIV 454
+TVTL R S G FGF V
Sbjct: 7 GGPKTVTLKRTSQG-FGFTLRHFIVYPPESAIQFSYKDEENGNRGGKQRNRLEPMDTIFV 65
Query: 455 SLV-KDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIP 506
V + A GL I++VNG +V+G +++ ++ + L L+++P
Sbjct: 66 KQVKEGGPAFEAGLCTGDRIIKVNGESVIGKTYSQVIALIQNSDTTLELSVMP 118
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics
consortium, SGC, protein BIN; 1.30A {Homo sapiens}
Length = 93
Score = 58.5 bits (142), Expect = 4e-11
Identities = 18/84 (21%), Positives = 40/84 (47%), Gaps = 8/84 (9%)
Query: 432 RTVTLHRDSSGHFGFHFNKGQ------IVSLVKDSSAARNGLL-VNHNILEVNGANVVGL 484
+ + L ++ G K + + +++ +A R+GL+ V + EVNG V
Sbjct: 6 KIIRLVKNREP-LGATIKKDEQTGAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDK 64
Query: 485 KDKELLEAMEKGGSVLTLTLIPTS 508
+ +E+++ + + +T +IP S
Sbjct: 65 RPEEIIQILAQSQGAITFKIIPGS 88
Score = 52.7 bits (127), Expect = 5e-09
Identities = 19/92 (20%), Positives = 38/92 (41%), Gaps = 3/92 (3%)
Query: 344 TNGIRELVLCKDASGL-IGLRVCAINEGVFVCLVERGSPASLVG-LRFGDQILSINGETV 401
++ ++ + L K+ L ++ + V + RG A G + GD++ +NG V
Sbjct: 2 SDSVKIIRLVKNREPLGATIKKDEQTGAIIVARIMRGGAADRSGLIHVGDELREVNGIPV 61
Query: 402 AGYNMKQVHKILKAAPVNNIRVVIRDRPLERT 433
+++ +IL + I I E T
Sbjct: 62 EDKRPEEIIQILAQSQ-GAITFKIIPGSKEET 92
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 128
Score = 59.4 bits (144), Expect = 4e-11
Identities = 25/105 (23%), Positives = 47/105 (44%), Gaps = 7/105 (6%)
Query: 332 SSSGSGLKKAYVTNG----IRELVLCKDASGLIGLRVC---AINEGVFVCLVERGSPASL 384
SS SG +++ + +++ L +GL + G+++ V+ GS A
Sbjct: 2 SSGSSGDRRSTLHLLQGGDEKKVNLVLGDGRSLGLTIRGGAEYGLGIYITGVDPGSEAEG 61
Query: 385 VGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRP 429
GL+ GDQIL +NG + + ++LK++ + V R
Sbjct: 62 SGLKVGDQILEVNGRSFLNILHDEAVRLLKSSRHLILTVKDVGRL 106
Score = 48.7 bits (116), Expect = 2e-07
Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 8/81 (9%)
Query: 431 ERTVTLHRDSSGHFGF------HFNKGQIVSLV-KDSSAARNGLLVNHNILEVNGANVVG 483
E+ V L G + G ++ V S A +GL V ILEVNG + +
Sbjct: 21 EKKVNLVLGDGRSLGLTIRGGAEYGLGIYITGVDPGSEAEGSGLKVGDQILEVNGRSFLN 80
Query: 484 LKDKELLEAMEKGGSVLTLTL 504
+ E + + K L LT+
Sbjct: 81 ILHDEAVRLL-KSSRHLILTV 100
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI, unknown
function; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 58.9 bits (143), Expect = 4e-11
Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 368 NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVI-R 426
N + + ++ G AS +R GD +LSI+G + G + +KA ++ + + R
Sbjct: 28 NMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACT-GSLNMTLQR 86
Query: 427 DRPLERTVTLHRD-SSG 442
++ + SSG
Sbjct: 87 ASAAAKSEPVSSGPSSG 103
Score = 45.8 bits (109), Expect = 1e-06
Identities = 15/80 (18%), Positives = 33/80 (41%), Gaps = 9/80 (11%)
Query: 432 RTVTLHRDSSGHFGFH------FNKGQIVSLV-KDSSAARNGLLVNHNILEVNGANVVGL 484
+V+L + +GF FN +S + A++ + + +L ++G + G+
Sbjct: 7 GSVSLVGPAP--WGFRLQGGKDFNMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGM 64
Query: 485 KDKELLEAMEKGGSVLTLTL 504
E ++ L +TL
Sbjct: 65 THLEAQNKIKACTGSLNMTL 84
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction,
membrane, phosphorylati domain, protein binding; 1.70A
{Homo sapiens} PDB: 2jwe_A 2osg_A
Length = 81
Score = 58.1 bits (141), Expect = 5e-11
Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Query: 349 ELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMK 407
LV + GLR + +FV + + S A+ G ++ GD +L ING ++
Sbjct: 5 TLVKSRKNEEY-GLR---LASHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLT 60
Query: 408 QVHKILKAAPVNNIR-VVIRD 427
+++ + ++ VV RD
Sbjct: 61 DAKTLIERSK-GKLKMVVQRD 80
Score = 55.4 bits (134), Expect = 4e-10
Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Query: 433 TVTLHRDS-SGHFGFHFNKGQIVS-LVKDSSAARNGLL-VNHNILEVNGANVVGLKDKEL 489
VTL + + +G V + +DS AAR+G + +L++NG + +
Sbjct: 3 KVTLVKSRKNEEYGLRLASHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDA 62
Query: 490 LEAMEKGGSVLTLTL 504
+E+ L + +
Sbjct: 63 KTLIERSKGKLKMVV 77
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A
1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A*
1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A*
1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 64.7 bits (157), Expect = 5e-11
Identities = 56/266 (21%), Positives = 95/266 (35%), Gaps = 29/266 (10%)
Query: 5 YPSLEDMTFHQLTIAQNEYFSKQTTSSSFSSPPPPVYQTSSHTSPNAYNNPPSPYHSANP 64
Y + + L + FS S S + + Y SP+ +
Sbjct: 1473 YSNESGLVNADLDVKDELMFSPLVDSGSNDAMAGG----FTAYGGADYGEATSPFGAYGE 1528
Query: 65 PPYYQHPSVPSHPSVPTFPSAPIYPSAPPQESHSPYYYSDIRANVPTGGSPVPSYPQGSY 124
P S + P P++P SP Y + PT S P+ P S
Sbjct: 1529 APT-------SPGFGVSSPG--FSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSP 1579
Query: 125 PS---NPYQAQNSYPSVPNQPQAPNTYPSMPNQLQAPNGFYPLTSSQQASQASLPYPINP 181
S +P S S P +P+ P+ P+ + P +S S S Y
Sbjct: 1580 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP--TSPSYSPTSPSYS--- 1634
Query: 182 LASNKPSAPQPPAYSVQPSHNTAYPTAP-LVPSTIATAPSAPPANIEDATRSTHPTTATA 240
++ +P P+YS P+ + PT+P P++ + +P++P + + S PT+ +
Sbjct: 1635 -PTSPSYSPTSPSYS--PTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYS--PTSPSY 1689
Query: 241 PSVPPAIHDATRSTPSPIIAPSVPPT 266
P + T + SP +P P
Sbjct: 1690 SPTSPN-YSPTSPSYSP-TSPGYSPG 1713
Score = 60.5 bits (146), Expect = 9e-10
Identities = 45/177 (25%), Positives = 66/177 (37%), Gaps = 21/177 (11%)
Query: 29 TSSSFSSPPPPVYQTSSHTSPNAYN-NPPSPYHSANPPPYYQH-----PSVPSH------ 76
TS S+S P TS SP + + +P SP +S P Y P+ PS+
Sbjct: 1559 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1618
Query: 77 --PSVPTF-PSAPIYPSAPPQESHSPYYYS----DIRANVPTGGSPVPSYPQGSYPSNPY 129
P+ P++ P++P Y P S + YS P PSY S +P
Sbjct: 1619 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPT 1678
Query: 130 QAQNSYPSVPNQPQAPNTYPSMPNQLQAPNGFYPLTSSQQASQASLPYPINPLASNK 186
S S P +PN P+ P+ G+ P S S N +++
Sbjct: 1679 SPSYSPTSPSYSPTSPNYSPTSPSYSPTSPGYSP--GSPAYSPKQDEQKHNENENSR 1733
Score = 53.2 bits (127), Expect = 2e-07
Identities = 45/222 (20%), Positives = 73/222 (32%), Gaps = 9/222 (4%)
Query: 47 TSPNAYNNPPSPYHSANPPPYYQHPSVPSHPSVPTFPSAPIYPSAPPQESHSPYYYSDIR 106
+P + + P V S + Y A E+ SP+
Sbjct: 1470 VTPYSNESGLVNADLDVKDELMFSPLVDSGSNDAMAGGFTAYGGADYGEATSPFGAYGEA 1529
Query: 107 ANVPTGGSPVPSYPQGSYPSNPYQAQNSYPSVPNQPQAPNTYPSMPNQLQAPNGFYPLTS 166
P G P + S +P S S P +P+ P+ P+ + P +
Sbjct: 1530 PTSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP--T 1587
Query: 167 SQQASQASLPY-PINPLASNKPSAPQPPAYSVQPSHNTAYPTAPLVPSTIATAPSAPPAN 225
S S S Y P +P S + P + S P+ + PT+P T + P+
Sbjct: 1588 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS- 1646
Query: 226 IEDATRSTHPTTATAPSVPPAIHDATRSTPSPIIAPSVPPTN 267
+ S PT+ P+ S SP +P+ P +
Sbjct: 1647 YSPTSPSYSPTSPAYSPTSPS-----YSPTSPSYSPTSPSYS 1683
Score = 36.6 bits (84), Expect = 0.026
Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 10/79 (12%)
Query: 27 QTTSSSFSSPPPPVYQTSSHTSPNAYNN-PPSPYHSANPPPYYQHPSVPSHPSVPTF-PS 84
TS S+S P TS SP + + P SP +S P Y P+ P + P
Sbjct: 1662 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSY--------SPTSPGYSPG 1713
Query: 85 APIYPSAPPQESHSPYYYS 103
+P Y ++ H+ S
Sbjct: 1714 SPAYSPKQDEQKHNENENS 1732
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled
coil, deafness, hearing, non-syndromic deafness,
polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A
Length = 192
Score = 60.7 bits (147), Expect = 6e-11
Identities = 28/148 (18%), Positives = 62/148 (41%), Gaps = 8/148 (5%)
Query: 289 EVASELINAYA--RENAANERESDAAGNTVARQAPRDSCTMIAPLSSSGSGLKKA-YVTN 345
+ +++ Y + A + N +R D+ + PL + +
Sbjct: 24 DYLYDVLRMYHQTMDVAVLVGDLKLVINEPSRLPLFDAIRPLIPLKHQVEYDQLTPRRSR 83
Query: 346 GIRELVLCKDASGLIGLRVC---AINEGVFVCLVERGSPASLVGLRFGDQILSINGETVA 402
++E+ L + +GL V G+F+ + +G A VGL+ GD+I+ ING +++
Sbjct: 84 KLKEVRLDRLHPEGLGLSVRGGLEFGCGLFISHLIKGGQADSVGLQVGDEIVRINGYSIS 143
Query: 403 GYNMKQVHKILKAAPVNNIRVVIRDRPL 430
++V +++ + + +R L
Sbjct: 144 SCTHEEVINLIRTE--KTVSIKVRHIGL 169
Score = 51.1 bits (122), Expect = 1e-07
Identities = 16/80 (20%), Positives = 32/80 (40%), Gaps = 8/80 (10%)
Query: 432 RTVTLHRDSSGHFGF------HFNKGQIVSLV-KDSSAARNGLLVNHNILEVNGANVVGL 484
+ V L R G F G +S + K A GL V I+ +NG ++
Sbjct: 86 KEVRLDRLHPEGLGLSVRGGLEFGCGLFISHLIKGGQADSVGLQVGDEIVRINGYSISSC 145
Query: 485 KDKELLEAMEKGGSVLTLTL 504
+E++ + + +++ +
Sbjct: 146 THEEVINLI-RTEKTVSIKV 164
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ,
cell junction, cell adhesion, signaling protein,
nucleotide exchange factor; 1.30A {Homo sapiens} PDB:
3kze_A
Length = 94
Score = 58.1 bits (140), Expect = 6e-11
Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 9/89 (10%)
Query: 347 IRELVLCKD--ASGLIGLRVCAINE----GVFVCLVERGSPASLVGLRFGDQILSINGET 400
+ + K A+ G + ++ E ++V V+ AS GL+ GD+IL IN
Sbjct: 7 THSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKGLKAGDEILEINNRA 66
Query: 401 VAGYNMKQVHKILKAAPVNNIRVVIRDRP 429
N + L + +++R P
Sbjct: 67 ADALNSSMLKDFLSQPSL---GLLVRTYP 92
Score = 46.5 bits (110), Expect = 8e-07
Identities = 16/87 (18%), Positives = 34/87 (39%), Gaps = 12/87 (13%)
Query: 432 RTVTLHRDSSGHFGFHFN--------KGQI-VSLVK-DSSAARNGLLVNHNILEVNGANV 481
++ + + + + F+ ++ V+ VK A++ GL ILE+N
Sbjct: 8 HSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKGLKAGDEILEINNRAA 67
Query: 482 VGLKDKELLEAMEKGGSV-LTLTLIPT 507
L + +L+ S+ L + P
Sbjct: 68 DAL-NSSMLKDFLSQPSLGLLVRTYPE 93
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer,
membrane protein-oxidoreductase CO; 1.90A {Mus musculus}
SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Length = 90
Score = 57.3 bits (139), Expect = 9e-11
Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 8/82 (9%)
Query: 431 ERTVTLHRDSSGHFGF------HFNKGQIVS-LVKDSSAARNGLL-VNHNILEVNGANVV 482
R VT+ + +G G ++S + K +A + L V IL VNG ++
Sbjct: 5 RRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLS 64
Query: 483 GLKDKELLEAMEKGGSVLTLTL 504
E ++A++K G + L +
Sbjct: 65 SATHDEAVQALKKTGKEVVLEV 86
Score = 53.8 bits (130), Expect = 2e-09
Identities = 17/83 (20%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Query: 348 RELVLCKDASGLIGLRV---CAINEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAG 403
R + + K +G +G+ + + + + +G A L GD ILS+NGE ++
Sbjct: 6 RRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSS 65
Query: 404 YNMKQVHKILKAAPVNNIRVVIR 426
+ + LK + + ++
Sbjct: 66 ATHDEAVQALKKTG-KEVVLEVK 87
>2xkx_A Disks large homolog 4; structural protein, scaffold protein,
membrane associated GU kinase; 22.9A {Rattus norvegicus}
Length = 721
Score = 63.4 bits (153), Expect = 9e-11
Identities = 38/191 (19%), Positives = 69/191 (36%), Gaps = 25/191 (13%)
Query: 347 IRELVLCKDASGLIGLRV--------CAINEGVFVCLVERGSPASLVG-LRFGDQILSIN 397
E+ L + SGL G + + +F+ + G A+ G LR D IL +N
Sbjct: 60 YEEITLERGNSGL-GFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVN 118
Query: 398 GETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSSGHFGFHFNKGQ----- 452
V + LK A V+R +P V + G G F+
Sbjct: 119 EVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGFSIAGGVGNQ 178
Query: 453 ---------IVSLVKDSSAARNGLL-VNHNILEVNGANVVGLKDKELLEAMEKGGSVLTL 502
+ +++ +A ++G L + IL VN + + ++ + A++ V+ L
Sbjct: 179 HIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYL 238
Query: 503 TLIPTSMYQHM 513
+ S
Sbjct: 239 KVAKPSNAYLS 249
Score = 53.8 bits (128), Expect = 9e-08
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 343 VTNGIRELVLCKDASGLIGLRVCAINE--GVFVCLVERGSPASLVG-LRFGDQILSINGE 399
+ R +V+ + ++GL G + + G+F+ + G PA L G LR GDQILS+NG
Sbjct: 304 IPREPRRIVIHRGSTGL-GFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGV 362
Query: 400 TVAGYNMKQVHKILKAAPVNNIRVVIRDRP 429
+ + +Q LK A + ++ + +P
Sbjct: 363 DLRNASHEQAAIALKNAG-QTVTIIAQYKP 391
Score = 49.1 bits (116), Expect = 3e-06
Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 14/112 (12%)
Query: 432 RTVTLHRDSSGHFGFHFNKGQ------------IVSLVKDSSAARNGLL-VNHNILEVNG 478
+TL R +SG GF G I ++ +AA++G L VN +IL VN
Sbjct: 61 EEITLERGNSG-LGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNE 119
Query: 479 ANVVGLKDKELLEAMEKGGSVLTLTLIPTSMYQHMMKKMSFNLVKDKMDHSI 530
+V + +EA+++ GS++ L ++ + ++ + SI
Sbjct: 120 VDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGFSI 171
Score = 43.7 bits (102), Expect = 1e-04
Identities = 23/106 (21%), Positives = 44/106 (41%), Gaps = 8/106 (7%)
Query: 432 RTVTLHRDSSGHFGFHFNKGQ------IVSLVKDSSAARNGLL-VNHNILEVNGANVVGL 484
R + +HR S+G GF+ G+ I ++ A +G L IL VNG ++
Sbjct: 309 RRIVIHRGSTG-LGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNA 367
Query: 485 KDKELLEAMEKGGSVLTLTLIPTSMYQHMMKKMSFNLVKDKMDHSI 530
++ A++ G +T+ + +L + M+ S+
Sbjct: 368 SHEQAAIALKNAGQTVTIIAQYKPEEYSRFEAKIHDLREQLMNSSL 413
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding
protein, membrane, sensory transduction, vision; 1.55A
{Drosophila melanogaster} PDB: 2qkt_A 2qku_A
Length = 96
Score = 57.3 bits (139), Expect = 1e-10
Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 3/87 (3%)
Query: 347 IRELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYN 405
+ L K A +GL + G + + +G + L+ GD I NG+ + G
Sbjct: 9 KFNVDLMKKAGKELGLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLP 68
Query: 406 MKQVHKILKAAPVNNIR-VVIRDRPLE 431
+ + + K A + V R +P
Sbjct: 69 FQVSYALFKGAN-GKVSMEVTRPKPAA 94
Score = 49.2 bits (118), Expect = 8e-08
Identities = 12/84 (14%), Positives = 29/84 (34%), Gaps = 5/84 (5%)
Query: 426 RDRPLERTVTLHRDSSGHFGFHFNKGQ----IVSLVKDSSAARNGLL-VNHNILEVNGAN 480
R+ + V L + + G + + I L++ + L I + NG
Sbjct: 4 RNSLEKFNVDLMKKAGKELGLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDA 63
Query: 481 VVGLKDKELLEAMEKGGSVLTLTL 504
+ GL + + +++ +
Sbjct: 64 LEGLPFQVSYALFKGANGKVSMEV 87
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1
protein, structural genomics, riken structural
genomics/proteomics initiative; NMR {Mus musculus} SCOP:
b.36.1.1
Length = 113
Score = 57.8 bits (140), Expect = 1e-10
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Query: 432 RTVTLHRDSSGHFGFHFNKGQ----IVSLVKDSSAARNGLL-VNHNILEVNGANVVGLKD 486
+ V + + G I +VK +A ++GLL +LE+NG + G
Sbjct: 27 KIVRIEKARDIPLGATVRNEMDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDV 86
Query: 487 KELLEAMEKGGSVLTLTLIPTS 508
E+ + + LT LIP+S
Sbjct: 87 NEVFDLLSDMHGTLTFVLIPSS 108
Score = 53.6 bits (129), Expect = 3e-09
Identities = 18/81 (22%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Query: 347 IRELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYN 405
++ + + K +G V + V + + +G A G L GD++L ING + G +
Sbjct: 26 VKIVRIEKARDIPLGATVRNEMDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKD 85
Query: 406 MKQVHKILKAAPVNNIRVVIR 426
+ +V +L + V+
Sbjct: 86 VNEVFDLLSDMH-GTLTFVLI 105
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide
binding protein; 1.54A {Rattus norvegicus} SCOP:
b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Length = 119
Score = 57.8 bits (140), Expect = 1e-10
Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 10/108 (9%)
Query: 343 VTNGIRELVLCKDASGLIGLRVC--AINEGVFVCLVERGSPASLVG-LRFGDQILSINGE 399
+ R +V+ + ++GL G + EG+F+ + G PA L G LR GDQILS+NG
Sbjct: 11 IPREPRRIVIHRGSTGL-GFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGV 69
Query: 400 TVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHR----DSSGH 443
+ + +Q LK A + ++ + +P E DSSG
Sbjct: 70 DLRNASHEQAAIALKNAG-QTVTIIAQYKP-EEYSRFEANSRVDSSGR 115
Score = 51.7 bits (124), Expect = 2e-08
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 9/86 (10%)
Query: 427 DRPLE-RTVTLHRDSSGHFGFHF-----NKGQIVSLV-KDSSAARNGLL-VNHNILEVNG 478
D P E R + +HR S+G GF+ +G +S + A +G L IL VNG
Sbjct: 10 DIPREPRRIVIHRGSTG-LGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNG 68
Query: 479 ANVVGLKDKELLEAMEKGGSVLTLTL 504
++ ++ A++ G +T+
Sbjct: 69 VDLRNASHEQAAIALKNAGQTVTIIA 94
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform
B; GOPC PDZ domain, structural protein; NMR {Homo
sapiens}
Length = 103
Score = 57.4 bits (139), Expect = 1e-10
Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 5/99 (5%)
Query: 338 LKKAYVTNGIRELVLCKDASGLIGLRV---CAINEGVFVCLVERGSPASLVG-LRFGDQI 393
+KK+ IR+++L K+ +G+ + + + + G PA G L GD I
Sbjct: 1 MKKSQGVGPIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAI 60
Query: 394 LSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLER 432
L++NG + K+ IL I + LE
Sbjct: 61 LAVNGVNLRDTKHKEAVTILSQQR-GEIEFEVVYVALEH 98
Score = 54.7 bits (132), Expect = 1e-09
Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 8/90 (8%)
Query: 431 ERTVTLHRDSSGHFGF------HFNKGQIVS-LVKDSSAARNGLL-VNHNILEVNGANVV 482
R V L ++ G ++S + A R G L V IL VNG N+
Sbjct: 10 IRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLR 69
Query: 483 GLKDKELLEAMEKGGSVLTLTLIPTSMYQH 512
K KE + + + + ++ ++ H
Sbjct: 70 DTKHKEAVTILSQQRGEIEFEVVYVALEHH 99
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc,
LNX2_human, zinc-finger, polymorphism, ring finger
protein 1; 1.3A {Homo sapiens}
Length = 95
Score = 57.3 bits (139), Expect = 1e-10
Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 347 IRELVLCKDASGL-IGLRVC--AINEGVFVCLVERGSPASLVG-LRFGDQILSINGETVA 402
I ++ L K SG +G+++ GVF+ + G A+ G L D++L+ING +
Sbjct: 4 ILQVALHKRDSGEQLGIKLVRRTDEPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLK 63
Query: 403 GYNMKQVHKILKAAPVNNIRVVIRDRP 429
+ +I++A+ + + I
Sbjct: 64 YGTPELAAQIIQASG-ERVNLTIARPG 89
Score = 47.7 bits (114), Expect = 3e-07
Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 8/81 (9%)
Query: 432 RTVTLHRDSSGH-FGFHFNKGQ------IVSLVKDSSAARNG-LLVNHNILEVNGANVVG 483
V LH+ SG G + I+ L++ AA++G L N +L +NG ++
Sbjct: 5 LQVALHKRDSGEQLGIKLVRRTDEPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKY 64
Query: 484 LKDKELLEAMEKGGSVLTLTL 504
+ + ++ G + LT+
Sbjct: 65 GTPELAAQIIQASGERVNLTI 85
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural
genomics, structura genomics consortium, SGC, signaling
protein; 1.12A {Homo sapiens} PDB: 2pku_A
Length = 114
Score = 57.5 bits (139), Expect = 1e-10
Identities = 20/87 (22%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 344 TNGIRELVLCKDASGLIGLRV---CAINEGVFVCLVERGSPASLVG-LRFGDQILSINGE 399
+ ++ L KDA LIG+ + +++ V +PA+L G + GD+I +NG
Sbjct: 22 SMVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGR 81
Query: 400 TVAGYNMKQVHKILKAAPVNNIRVVIR 426
++ G +V K+++ + +
Sbjct: 82 SIKGKTKVEVAKMIQEVK-GEVTIHYN 107
Score = 54.8 bits (132), Expect = 2e-09
Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 429 PLERTVTLHRDSSGHFGFHFNKGQ-------IVSLVKDSSAARNGLL-VNHNILEVNGAN 480
+ VTL +D+ G G IV + ++ AA +G + I VNG +
Sbjct: 23 MVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRS 82
Query: 481 VVGLKDKELLEAMEKGGSVLTLTL 504
+ G E+ + +++ +T+
Sbjct: 83 IKGKTKVEVAKMIQEVKGEVTIHY 106
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 93
Score = 56.9 bits (138), Expect = 2e-10
Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 9/82 (10%)
Query: 431 ERTVTLHRDSSGHFGF------HFNKGQIVS-LVKDSSAARNGLL-VNHNILEVNGANVV 482
V L + G GF N +S ++ A R+G L +L VNG +V
Sbjct: 6 SGVVELPKTDEG-LGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVE 64
Query: 483 GLKDKELLEAMEKGGSVLTLTL 504
G + ++ +E ++ + L +
Sbjct: 65 GEQHEKAVELLKAAQGSVKLVV 86
Score = 54.9 bits (133), Expect = 7e-10
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Query: 344 TNGIRELVLCKDASGLIGLRV---CAINEGVFVCLVERGSPASLVG-LRFGDQILSINGE 399
+ + L K GL G + N +++ V G A G L+ GDQ+LS+NG
Sbjct: 3 SGSSGVVELPKTDEGL-GFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGV 61
Query: 400 TVAGYNMKQVHKILKAAPVNNIRVVIRDRP 429
+V G ++ ++LKAA ++++V+R P
Sbjct: 62 SVEGEQHEKAVELLKAAQ-GSVKLVVRSGP 90
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease,
trypsin, chaperone, PDZ, ATP-independent,
temperature-regulated, periplasm; 2.80A {Escherichia
coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A
3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Length = 448
Score = 61.6 bits (150), Expect = 3e-10
Identities = 37/156 (23%), Positives = 68/156 (43%), Gaps = 23/156 (14%)
Query: 368 NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVN-NIRV-VI 425
G FV V S A+ G++ GD I S+NG+ ++ + + + PV + + ++
Sbjct: 285 QRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPIS--SFAALRAQVGTMPVGSKLTLGLL 342
Query: 426 RD-RPLERTVTLHR-------DSSGHFGFHF--------NKGQIVSLVK-DSSAARNGLL 468
RD + + + L + SS G ++G +V+ VK + AA+ GL
Sbjct: 343 RDGKQVNVNLELQQSSQNQVDSSSIFNGIEGAEMSNKGKDQGVVVNNVKTGTPAAQIGLK 402
Query: 469 VNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTL 504
I+ N V + + L + ++ SVL L +
Sbjct: 403 KGDVIIGANQQAVKNIAE--LRKVLDSKPSVLALNI 436
Score = 50.4 bits (121), Expect = 8e-07
Identities = 19/69 (27%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 368 NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRD 427
++GV V V+ G+PA+ +GL+ GD I+ N + V N+ ++ K+L + P + + + I+
Sbjct: 382 DQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVK--NIAELRKVLDSKP-SVLALNIQR 438
Query: 428 RPLERTVTL 436
+ +
Sbjct: 439 GDSTIYLLM 447
Score = 31.5 bits (72), Expect = 0.79
Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
Query: 444 FGFHFNKGQIVSLV-KDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTL 502
+G VS V +SSAA+ G+ I +NG + GS LTL
Sbjct: 280 MKVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTL 339
Query: 503 TLI 505
L+
Sbjct: 340 GLL 342
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane,
mitochondria distribution, PDZ, membrane, scaffold,
mitochondrion, membrane protein; 1.35A {Homo sapiens}
PDB: 2jin_A
Length = 101
Score = 56.2 bits (136), Expect = 3e-10
Identities = 21/96 (21%), Positives = 45/96 (46%), Gaps = 10/96 (10%)
Query: 347 IRELVLCKDASGL-------IGLRVCAINEGVFVCLVERGSPASLVG-LRFGDQILSING 398
E+ L + SGL + + + G++V ++ A+L G L+ GD+ILS+NG
Sbjct: 8 EEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNG 67
Query: 399 ETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTV 434
+ + + + + A + + ++ LE ++
Sbjct: 68 QDLKNLLHQDAVDLFRNAG-YAVSLRVQ-HRLESSI 101
Score = 52.7 bits (127), Expect = 5e-09
Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 14/87 (16%)
Query: 431 ERTVTLHRDSSGHFGFHFNKGQ------------IVSLVKDSSAARNG-LLVNHNILEVN 477
E + L R SG GF+ G + + ++ +AA +G L IL VN
Sbjct: 8 EEEINLTRGPSG-LGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVN 66
Query: 478 GANVVGLKDKELLEAMEKGGSVLTLTL 504
G ++ L ++ ++ G ++L +
Sbjct: 67 GQDLKNLLHQDAVDLFRNAGYAVSLRV 93
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated
protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 96
Score = 55.8 bits (135), Expect = 3e-10
Identities = 16/79 (20%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Query: 429 PLERTVTLHRDSSGH-FGFH--FNKGQIVSLVKDSSAARNGLLVNHNILEVNGANVVGLK 485
+ TV + +D+ +GFH + V V +A L IL++N L
Sbjct: 7 GVRHTVKIDKDTLLQDYGFHISESLPLTVVAVTAGGSAHGKLFPGDQILQMNNEPAEDLS 66
Query: 486 DKELLEAMEKGGSVLTLTL 504
+ ++ + + L++T+
Sbjct: 67 WERAVDILREAEDSLSITV 85
Score = 49.7 bits (119), Expect = 6e-08
Identities = 21/97 (21%), Positives = 36/97 (37%), Gaps = 9/97 (9%)
Query: 333 SSGSGLKKAYVTNGIRELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQ 392
SSGS + V + G + + + V V G A L GDQ
Sbjct: 2 SSGSSGVRHTVK-----IDKDTLLQDY-GFHISE-SLPLTVVAVTAGGSAH-GKLFPGDQ 53
Query: 393 ILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRP 429
IL +N E + ++ IL+ A +++ + +
Sbjct: 54 ILQMNNEPAEDLSWERAVDILREAE-DSLSITVVRCT 89
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1;
endoplasmic reticulum, postsynaptic membrane, membrane,
MEMB protein; 1.5A {Homo sapiens}
Length = 97
Score = 56.1 bits (136), Expect = 3e-10
Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 10/96 (10%)
Query: 347 IRELVLCKDASGLIGLRV-------CAINEGVFVCLVERGSPASLVG-LRFGDQILSING 398
E+ L K+ + G + + V + V G PA G ++ GD++LS++G
Sbjct: 4 TVEVTLHKEGNTF-GFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDG 62
Query: 399 ETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTV 434
+ G + ILK ++I E V
Sbjct: 63 IRLLGTTHAEAMSILKQCG-QEAALLIEYDVSETAV 97
Score = 48.0 bits (115), Expect = 2e-07
Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 13/84 (15%)
Query: 433 TVTLHRDSSGHFGF---------HFNKGQIV--SLVKDSSAARNGLL-VNHNILEVNGAN 480
VTLH++ + FGF +V S+ A R G + +L V+G
Sbjct: 6 EVTLHKEGNT-FGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIR 64
Query: 481 VVGLKDKELLEAMEKGGSVLTLTL 504
++G E + +++ G L +
Sbjct: 65 LLGTTHAEAMSILKQCGQEAALLI 88
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor
(LCF), structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.2
Length = 119
Score = 56.7 bits (137), Expect = 3e-10
Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 5/114 (4%)
Query: 333 SSGSGLKKAYVTNGIRELVLCKDASGLIGLRVC----AINEGVFVCLVERGSPASLVG-L 387
SSGS +GI +L K+ +G + N+ + V V AS G +
Sbjct: 2 SSGSSGATLKQLDGIHVTILHKEEGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTI 61
Query: 388 RFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSS 441
+ G+++LSING+++ G IL+ A V++ + + S
Sbjct: 62 QKGNEVLSINGKSLKGTTHHDALAILRQAREPRQAVIVTRKLTPEAMPDLNSSG 115
Score = 42.4 bits (100), Expect = 3e-05
Identities = 12/86 (13%), Positives = 29/86 (33%), Gaps = 9/86 (10%)
Query: 429 PLERTVTLHRDSSGHFGF------HFNKGQIV--SLVKDSSAARNGLL-VNHNILEVNGA 479
LH++ GF I + + A++ G + + +L +NG
Sbjct: 14 DGIHVTILHKEEGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGK 73
Query: 480 NVVGLKDKELLEAMEKGGSVLTLTLI 505
++ G + L + + ++
Sbjct: 74 SLKGTTHHDALAILRQAREPRQAVIV 99
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; transferase, STRU genomics, structural genomics
consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo
sapiens}
Length = 112
Score = 56.2 bits (136), Expect = 4e-10
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Query: 432 RTVTLHRDSSGHFGF------HFNKGQIVS-LVKDSSAARNG-LLVNHNILEVNGANVVG 483
TV L R + G FGF +N V L +D A R+G + + ILE+NG
Sbjct: 26 YTVELERGAKG-FGFSLRGGREYNMDLYVLRLAEDGPAERSGKMRIGDEILEINGETTKN 84
Query: 484 LKDKELLEAMEKGGSVLTLTL 504
+K +E ++ GG + L L
Sbjct: 85 MKHSRAIELIKNGGRRVRLFL 105
Score = 56.2 bits (136), Expect = 4e-10
Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 8/104 (7%)
Query: 332 SSSGSGLKKAYVTNG-IRELVLCKDASGLIGLRV---CAINEGVFVCLVERGSPASLVG- 386
S G + Y + + L + A G G + N ++V + PA G
Sbjct: 9 SGVDLGTENLYFQSMDFYTVELERGAKGF-GFSLRGGREYNMDLYVLRLAEDGPAERSGK 67
Query: 387 LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIR-VVIRDRP 429
+R GD+IL INGET + +++K +R + R
Sbjct: 68 MRIGDEILEINGETTKNMKHSRAIELIKNGG-RRVRLFLKRGET 110
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 56.2 bits (136), Expect = 4e-10
Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 13/104 (12%)
Query: 332 SSSGSGLKKAYVTNGIRELVLCKDASGLIGLRVCA---INEGVFVCLVERGSPASLVG-L 387
SS SG K ++ L + SG G R+ + + + V A G L
Sbjct: 2 SSGSSGYK-------ELDVHLRRMESGF-GFRILGGDEPGQPILIGAVIAMGSADRDGRL 53
Query: 388 RFGDQILSINGETVAGYNMKQVHKILKAAPVNN-IRVVIRDRPL 430
GD+++ ++G VAG + V ++ A N + + +R + L
Sbjct: 54 HPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQVNLTVRRKVL 97
Score = 49.2 bits (118), Expect = 9e-08
Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 9/83 (10%)
Query: 431 ERTVTLHRDSSGHFGF------HFNKGQIVS-LVKDSSAARNG-LLVNHNILEVNGANVV 482
E V L R SG FGF + ++ ++ SA R+G L ++ V+G V
Sbjct: 10 ELDVHLRRMESG-FGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVA 68
Query: 483 GLKDKELLEAMEKGGSVLTLTLI 505
G + +++ M + L
Sbjct: 69 GKTHRYVIDLMHHAARNGQVNLT 91
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing
protein 1; PDZ, E6 binding, tumor suppressor, peptide
binding protein; 2.15A {Mus musculus}
Length = 85
Score = 55.3 bits (134), Expect = 4e-10
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
Query: 349 ELVLCKDASGLIGLRVC---AINEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGY 404
L K + G G V +E + + + PA+L G + GD I+S+N V G+
Sbjct: 3 HTKLRKSSRGF-GFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGH 61
Query: 405 NMKQVHKILKAAPVNN-IRVVIR 426
QV KI ++ P+ + + +
Sbjct: 62 THAQVVKIFQSIPIGASVDLELC 84
Score = 50.0 bits (120), Expect = 3e-08
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 11/82 (13%)
Query: 433 TVTLHRDSSGHFGFHFNKG-------QIVSLVKDSSAARNG-LLVNHNILEVNGANVVGL 484
L + S G FGF G QI SLV D AA +G + I+ VN V+G
Sbjct: 3 HTKLRKSSRG-FGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGH 61
Query: 485 KDKELLEAME--KGGSVLTLTL 504
++++ + G+ + L L
Sbjct: 62 THAQVVKIFQSIPIGASVDLEL 83
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane
protein 25, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 120
Score = 55.9 bits (135), Expect = 7e-10
Identities = 27/120 (22%), Positives = 53/120 (44%), Gaps = 10/120 (8%)
Query: 332 SSSGSGLK-KAYVTNGIRELVLCKDASGL-------IGLRVCAINEGVFVCLVERGSPAS 383
SS SG+ + E+ L + SGL + + + G++V ++ A+
Sbjct: 2 SSGSSGMNGRVDYLVTEEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAA 61
Query: 384 LVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSSG 442
L G L+ GD+ILS+NG+ + + + + A + + ++ R + + SSG
Sbjct: 62 LDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAG-YAVSLRVQHRLQVQNGPISGPSSG 120
Score = 48.6 bits (116), Expect = 3e-07
Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 14/87 (16%)
Query: 431 ERTVTLHRDSSGHFGFHFNKGQ------------IVSLVKDSSAARNG-LLVNHNILEVN 477
E + L R SG GF+ G + + ++ +AA +G L IL VN
Sbjct: 18 EEEINLTRGPSG-LGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVN 76
Query: 478 GANVVGLKDKELLEAMEKGGSVLTLTL 504
G ++ L ++ ++ G ++L +
Sbjct: 77 GQDLKNLLHQDAVDLFRNAGYAVSLRV 103
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, unknown function; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 55.0 bits (133), Expect = 1e-09
Identities = 25/103 (24%), Positives = 48/103 (46%), Gaps = 8/103 (7%)
Query: 347 IRELVLCKDASGL---I--GLRVCAINEGVFVCLVERGSPASLVG-LRFGDQILSINGET 400
+ + L + SGL + G+ G+++ + GSPA+ G L GD+IL +NG +
Sbjct: 9 VFTVELERGPSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSS 68
Query: 401 VAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRD-SSG 442
+ G + +++ +R ++ +E +H SSG
Sbjct: 69 LLGLGYLRAVDLIRHGG-KKMRFLVAKSDVETAKKIHSGPSSG 110
Score = 52.3 bits (126), Expect = 8e-09
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 12/83 (14%)
Query: 433 TVTLHRDSSGHFGF---------HFNKGQIVS-LVKDSSAARNG-LLVNHNILEVNGANV 481
TV L R SG G G + L+ S AA +G L + ILEVNG+++
Sbjct: 11 TVELERGPSG-LGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSL 69
Query: 482 VGLKDKELLEAMEKGGSVLTLTL 504
+GL ++ + GG + +
Sbjct: 70 LGLGYLRAVDLIRHGGKKMRFLV 92
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high
affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB:
2h2c_A 2h3m_A 2rrm_A
Length = 107
Score = 55.1 bits (133), Expect = 1e-09
Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 12/86 (13%)
Query: 431 ERTVTLHRDSSGHFGF---------HFNKGQ---IVSLVKDSSAARNGLLVNHNILEVNG 478
+ TVTLHR FG HF G+ ++S V A L N + VNG
Sbjct: 8 QHTVTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAEGQLQENDRVAMVNG 67
Query: 479 ANVVGLKDKELLEAMEKGGSVLTLTL 504
++ ++ ++ + K G +T+
Sbjct: 68 VSMDNVEHAFAVQQLRKSGKNAKITI 93
Score = 47.0 bits (112), Expect = 6e-07
Identities = 16/102 (15%), Positives = 36/102 (35%), Gaps = 14/102 (13%)
Query: 347 IRELVLCKDASGLIGLRV---------CAINEGVFVCLVERGSPASLVGLRFGDQILSIN 397
+ L + G+ + + + + V +G PA L+ D++ +N
Sbjct: 8 QHTVTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE-GQLQENDRVAMVN 66
Query: 398 GETVAGYNMKQVHKILKAAPVNNIRVVI---RDRPLERTVTL 436
G ++ + L+ + N ++ I + RT L
Sbjct: 67 GVSMDNVEHAFAVQQLRKSG-KNAKITIRRKKGGGWRRTTYL 107
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 108
Score = 55.1 bits (133), Expect = 1e-09
Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 7/104 (6%)
Query: 333 SSGSGLKKAYVTNGIRELVLCKDASGL----IGLRVCAI--NEGVFVCLVERGSPASLVG 386
SSGS + A + ++ + L KD GL + + + + + A G
Sbjct: 2 SSGSSGELALWSPEVKIVELVKDCKGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSG 61
Query: 387 -LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRP 429
L GD+++S+N + ++ + +ILKA P + + I P
Sbjct: 62 GLLPGDRLVSVNEYCLDNTSLAEAVEILKAVPPGLVHLGICSGP 105
Score = 38.5 bits (90), Expect = 5e-04
Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 13/77 (16%)
Query: 429 PLERTVTLHRDSSGHFGF-------HFNKG----QIVSLVKDSSAARNG-LLVNHNILEV 476
P + V L +D G GF + I SLV D A R+G LL ++ V
Sbjct: 14 PEVKIVELVKDCKG-LGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSV 72
Query: 477 NGANVVGLKDKELLEAM 493
N + E +E +
Sbjct: 73 NEYCLDNTSLAEAVEIL 89
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase,
protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Length = 125
Score = 55.1 bits (133), Expect = 1e-09
Identities = 20/91 (21%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
Query: 343 VTNGIRELVLCKDASGLIGLRV---CAINEGVFVCLVERGSPASLVG-LRFGDQILSING 398
+ ++ L KDA LIG+ + +++ V +PA+L G + GD+I +NG
Sbjct: 16 IPTVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNG 75
Query: 399 ETVAGYNMKQVHKILKAAPVNNIRVVIRDRP 429
++ G +V K+++ + +
Sbjct: 76 RSIKGKTKVEVAKMIQEVK-GEVTIHYNKLQ 105
Score = 54.4 bits (131), Expect = 3e-09
Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 8/82 (9%)
Query: 431 ERTVTLHRDSSGHFGFH------FNKG-QIVSLVKDSSAARNGLL-VNHNILEVNGANVV 482
VTL +D+ G + IV + ++ AA +G + I VNG ++
Sbjct: 20 PGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIK 79
Query: 483 GLKDKELLEAMEKGGSVLTLTL 504
G E+ + +++ +T+
Sbjct: 80 GKTKVEVAKMIQEVKGEVTIHY 101
>3gge_A PDZ domain-containing protein GIPC2; structural genomics,
structural genomics consort protein binding; 2.60A {Homo
sapiens}
Length = 95
Score = 54.4 bits (131), Expect = 1e-09
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Query: 348 RELVLCKDASGLIGLRVCAINEG-VFVCLVERGSPASLVG-LRFGDQILSINGETVAGYN 405
+E+ + K L GL + G F+ ++ G V + GD I SINGE + G+
Sbjct: 7 KEVNVYKSEDSL-GLTITDNGVGYAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWR 65
Query: 406 MKQVHKILKAAPVNNIRVVIRDRPLE 431
V K LK + + P +
Sbjct: 66 HYDVAKKLKELKKEELFTMKLIEPKK 91
Score = 46.7 bits (111), Expect = 6e-07
Identities = 16/84 (19%), Positives = 34/84 (40%), Gaps = 9/84 (10%)
Query: 431 ERTVTLHRDSSGHFGF----HFNKGQIVSLVKDSSAA-RNGLL-VNHNILEVNGANVVGL 484
E+ V +++ G + + +KD + V +I +NG N+VG
Sbjct: 6 EKEVNVYKSEDS-LGLTITDNGVGYAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGW 64
Query: 485 KDKELLEAM--EKGGSVLTLTLIP 506
+ ++ + + K + T+ LI
Sbjct: 65 RHYDVAKKLKELKKEELFTMKLIE 88
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A
{Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Length = 97
Score = 54.2 bits (131), Expect = 1e-09
Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 9/83 (10%)
Query: 432 RTVTLHRDSSGHFGFHFNKGQ-------IVSLVKDSSAARNGLL-VNHNILEVNGANVVG 483
TV L R G + + I SL K A R G + + IL +N +++ G
Sbjct: 7 YTVELKRYGGP-LGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKG 65
Query: 484 LKDKELLEAMEKGGSVLTLTLIP 506
E + ++ G +TL +
Sbjct: 66 KPLSEAIHLLQMAGETVTLKIKK 88
Score = 51.2 bits (123), Expect = 2e-08
Identities = 17/87 (19%), Positives = 39/87 (44%), Gaps = 6/87 (6%)
Query: 347 IRELVLCKDASGLIGLRV---CAINEGVFVCLVERGSPASLVG-LRFGDQILSINGETVA 402
I + L + L G+ + + + + + +G A G + GD+IL+IN ++
Sbjct: 6 IYTVELKRYGGPL-GITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLK 64
Query: 403 GYNMKQVHKILKAAPVNNIRVVIRDRP 429
G + + +L+ A + + I+ +
Sbjct: 65 GKPLSEAIHLLQMAG-ETVTLKIKKQT 90
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction,
membrane, phosphoprot domain, tight junction,
transmembrane; 2.40A {Homo sapiens}
Length = 92
Score = 53.9 bits (130), Expect = 1e-09
Identities = 18/92 (19%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
Query: 347 IRELVLCKDASGL-IGLRVCAINEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGY 404
++ L K A GLR + +FV + + S A+ G ++ GD +L ING
Sbjct: 3 PTKVTLVKSAKNEEYGLR---LASHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENM 59
Query: 405 NMKQVHKILKAAPVNNIRVVIRDRPLERTVTL 436
++ +++ + +++V++ + +
Sbjct: 60 SLTDAKTLIERSK-GKLKMVVQRDERATLLNV 90
Score = 50.5 bits (121), Expect = 3e-08
Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Query: 432 RTVTLHRDSSGH-FGFHFNKGQIVS-LVKDSSAARNG-LLVNHNILEVNGANVVGLKDKE 488
VTL + + +G V + +DS AAR+G + +L++NG + +
Sbjct: 4 TKVTLVKSAKNEEYGLRLASHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTD 63
Query: 489 LLEAMEKGGSVLTLTL 504
+E+ L + +
Sbjct: 64 AKTLIERSKGKLKMVV 79
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase;
2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Length = 451
Score = 59.2 bits (144), Expect = 2e-09
Identities = 34/163 (20%), Positives = 59/163 (36%), Gaps = 30/163 (18%)
Query: 369 EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVN-NIRV-VIR 426
+G V V SPA L GL+ GD I IN + QV + V +++ V R
Sbjct: 282 QGALVSQVNPNSPAELAGLKAGDIITQINDTKIT--QATQVKTTISLLRVGSTVKIIVER 339
Query: 427 D-RPLERTVTLHR----------DSSGHFGFHFNK-------------GQIVSLVKDSSA 462
D +PL + + ++ +G Q+V ++S+
Sbjct: 340 DNKPLTLSAVVTDIKSHEQKLQSNNPFLYGLALRAFEQESPPHGNVIGVQVVGASENSAG 399
Query: 463 ARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLI 505
R G+ I+ N V +K L ++ L + ++
Sbjct: 400 WRAGIRPGDIIISANKKPVTDVKS--LQTIAQEKKKELLVQVL 440
Score = 50.0 bits (120), Expect = 1e-06
Identities = 20/92 (21%), Positives = 33/92 (35%), Gaps = 12/92 (13%)
Query: 354 KDASGLIGLRVCAIN---------EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGY 404
+ L GL + A GV V S G+R GD I+S N + V
Sbjct: 362 SNNPFLYGLALRAFEQESPPHGNVIGVQVVGASENSAGWRAGIRPGDIIISANKKPVT-- 419
Query: 405 NMKQVHKILKAAPVNNIRVVIRDRPLERTVTL 436
++K + I + + V + P + +
Sbjct: 420 DVKSLQTIAQEKK-KELLVQVLRGPGSMYLLV 450
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1
interacting protein 1, activin receptor interacting
protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 54.3 bits (131), Expect = 2e-09
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 9/81 (11%)
Query: 432 RTVTLHRDSSGHFGF------HFNKGQIVS-LVKDSSAARNGLL-VNHNILEVNGANVVG 483
TV + + + G FGF + V L +D A RNG + V I+E+NG +
Sbjct: 13 FTVDMEKGAKG-FGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRD 71
Query: 484 LKDKELLEAMEKGGSVLTLTL 504
+ +E ++ GG + L L
Sbjct: 72 MTHARAIELIKSGGRRVRLLL 92
Score = 53.5 bits (129), Expect = 3e-09
Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 11/102 (10%)
Query: 332 SSSGSGLKKAYVTNGIRELVLCKDASGLIGLRV---CAINEGVFVCLVERGSPASLVG-L 387
SS SG + + K A G G + ++V + PA G +
Sbjct: 2 SSGSSGQD-----FDYFTVDMEKGAKGF-GFSIRGGREYKMDLYVLRLAEDGPAIRNGRM 55
Query: 388 RFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRP 429
R GDQI+ INGE+ + +++K+ +R++++
Sbjct: 56 RVGDQIIEINGESTRDMTHARAIELIKSGG-RRVRLLLKRGT 96
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight
junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A
3lh5_A
Length = 391
Score = 58.7 bits (141), Expect = 2e-09
Identities = 32/126 (25%), Positives = 48/126 (38%), Gaps = 17/126 (13%)
Query: 348 RELVLCKDASGLIGLRVCAINE-GVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNM 406
+LV + + GLR+ N+ G+FV V SPA+ GL GDQIL +N
Sbjct: 10 MKLVKFRKGDSV-GLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIR 68
Query: 407 KQVHKILKAA-------------PVNNIRVVIRDRPLERTVTLHRDSSGHF--GFHFNKG 451
++ L R+V D + H + G FNKG
Sbjct: 69 EEAVLFLLDLPKGEEVTILAQKKKDVYRRIVESDVGDSFYIRTHFEYEKESPYGLSFNKG 128
Query: 452 QIVSLV 457
++ +V
Sbjct: 129 EVFRVV 134
Score = 46.4 bits (109), Expect = 2e-05
Identities = 19/107 (17%), Positives = 38/107 (35%), Gaps = 7/107 (6%)
Query: 428 RPLERTVTLHRDSSGHFGFHF----NKGQIVSLV-KDSSAARNGLLVNHNILEVNGANVV 482
RP + V + G + G V+ V +DS AA+ GL IL VN +
Sbjct: 7 RPSMKLVKFRK--GDSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFT 64
Query: 483 GLKDKELLEAMEKGGSVLTLTLIPTSMYQHMMKKMSFNLVKDKMDHS 529
+ +E + + +T++ + + ++ +
Sbjct: 65 NIIREEAVLFLLDLPKGEEVTILAQKKKDVYRRIVESDVGDSFYIRT 111
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding
site complex, protein binding; 1.43A {Homo sapiens} PDB:
3nfl_A 2vph_A
Length = 107
Score = 54.4 bits (131), Expect = 2e-09
Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 5/99 (5%)
Query: 332 SSSGSGLKKAYVTNGIRELVLCKDASGLIGLRV---CAINEGVFVCLVERGSPASLV--G 386
S + + + + D +G G V V V V G+PA L
Sbjct: 3 SPEKPTPNGGIPHDNLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPR 62
Query: 387 LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVI 425
L GDQ++ ING +A + QV +KA+ + ++
Sbjct: 63 LNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELM 101
Score = 46.7 bits (111), Expect = 8e-07
Identities = 14/83 (16%), Positives = 31/83 (37%), Gaps = 9/83 (10%)
Query: 432 RTVTLHRDSSGHFGFH------FNKGQIVSLVKDSSAA---RNGLLVNHNILEVNGANVV 482
+ + D +G FGF+ IVS V + A L ++ +NG ++
Sbjct: 19 VLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIA 78
Query: 483 GLKDKELLEAMEKGGSVLTLTLI 505
+++ ++ + L+
Sbjct: 79 EHTHDQVVLFIKASCERHSGELM 101
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 54.2 bits (131), Expect = 2e-09
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 11/83 (13%)
Query: 432 RTVTLHRDSSGHFGFHFNKGQ---------IVSLVKDSSAARNGLL-VNHNILEVNGANV 481
+V L R +G FG G+ + L+KD A R G L V +L +NG +
Sbjct: 13 FSVELVRGYAG-FGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGEST 71
Query: 482 VGLKDKELLEAMEKGGSVLTLTL 504
GL + +E + GG L L +
Sbjct: 72 QGLTHAQAVERIRAGGPQLHLVI 94
Score = 53.1 bits (128), Expect = 5e-09
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 8/91 (8%)
Query: 345 NGIRELVLCKDASGLIGLRV-----CAINEGVFVCLVERGSPASLVG-LRFGDQILSING 398
+G + L + +G GL + A + + V + + PA G L GD +L ING
Sbjct: 10 SGHFSVELVRGYAGF-GLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHING 68
Query: 399 ETVAGYNMKQVHKILKAAPVNNIRVVIRDRP 429
E+ G Q + ++A + +VIR
Sbjct: 69 ESTQGLTHAQAVERIRAGG-PQLHLVIRRPL 98
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus
interaction, structural genomics consortium,
synaptosome, tight junction; 1.35A {Homo sapiens}
Length = 97
Score = 53.8 bits (130), Expect = 2e-09
Identities = 21/99 (21%), Positives = 46/99 (46%), Gaps = 11/99 (11%)
Query: 344 TNGIRELVLCKDASGLIGLRV-------CAINEGVFVCLVERGSPASLVG-LRFGDQILS 395
+ ++ L K+ GL G+ + G+FV + + S G ++ GDQI++
Sbjct: 2 MSETFDVELTKNVQGL-GITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIA 60
Query: 396 INGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTV 434
++G + G+ +Q ++L+ + + + R E +V
Sbjct: 61 VDGTNLQGFTNQQAVEVLRHTG-QTVLLTLM-RRGETSV 97
Score = 52.3 bits (126), Expect = 8e-09
Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 13/84 (15%)
Query: 433 TVTLHRDSSGHFGF---------HFNKGQIV--SLVKDSSAARNG-LLVNHNILEVNGAN 480
V L ++ G G I S+ K S+ +G + + I+ V+G N
Sbjct: 7 DVELTKNVQG-LGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTN 65
Query: 481 VVGLKDKELLEAMEKGGSVLTLTL 504
+ G +++ +E + G + LTL
Sbjct: 66 LQGFTNQQAVEVLRHTGQTVLLTL 89
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein;
1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Length = 98
Score = 53.9 bits (130), Expect = 2e-09
Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 14/87 (16%)
Query: 432 RTVTLHRDSSGHFGF---------HFNKGQ----IVSLVKDSSAARNGLL-VNHNILEVN 477
VTL + FG N I +V DS A G L V IL +N
Sbjct: 7 HMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLN 66
Query: 478 GANVVGLKDKELLEAMEKGGSVLTLTL 504
G +V ++ +++ +++ + L +
Sbjct: 67 GKDVRNSTEQAVIDLIKEADFKIELEI 93
Score = 52.7 bits (127), Expect = 5e-09
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 11/90 (12%)
Query: 347 IRELVLCKDASGLIGLRV---------CAINEGVFVCLVERGSPASLVG-LRFGDQILSI 396
I + L K G+ + G+F+ + SPA L G L+ GD+ILS+
Sbjct: 6 IHMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSL 65
Query: 397 NGETVAGYNMKQVHKILKAAPVNNIRVVIR 426
NG+ V + V ++K A I + I+
Sbjct: 66 NGKDVRNSTEQAVIDLIKEAD-FKIELEIQ 94
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3;
neuron-specific X11L2 protein, neuronal
MUNC18-1-interacting protein 3, MINT-3; NMR {Homo
sapiens}
Length = 101
Score = 54.0 bits (130), Expect = 2e-09
Identities = 18/92 (19%), Positives = 37/92 (40%), Gaps = 7/92 (7%)
Query: 345 NGIRELVLCKDASGLIGLRVCA-----INEGVFVCLVERGSPASLVG-LRFGDQILSING 398
+ RE+ L K +G+ + + + + G PA G L GD++ +ING
Sbjct: 8 DNCREVHLEKRRGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAING 67
Query: 399 ETVAGYNMKQVHKILKAA-PVNNIRVVIRDRP 429
++ G + ++ ++ + I P
Sbjct: 68 TSLVGLPLAACQAAVRETKSQTSVTLSIVHCP 99
Score = 48.6 bits (116), Expect = 2e-07
Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 12/88 (13%)
Query: 432 RTVTLHRDSSGHFGFHFNKGQ---------IVSLVKDSSAARNGLL-VNHNILEVNGANV 481
R V L + G + I +L+ A R+G L + + +NG ++
Sbjct: 11 REVHLEKRRGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSL 70
Query: 482 VGLKDKELLEAME--KGGSVLTLTLIPT 507
VGL A+ K + +TL+++
Sbjct: 71 VGLPLAACQAAVRETKSQTSVTLSIVHC 98
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 114
Score = 54.0 bits (130), Expect = 2e-09
Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 15/90 (16%)
Query: 432 RTVTLHRDSSGHFGFHFNKGQ--------------IVSLVKDSSAARNGLL-VNHNILEV 476
V +HR + FGF I ++ S A R L V IL V
Sbjct: 12 SDVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAV 71
Query: 477 NGANVVGLKDKELLEAMEKGGSVLTLTLIP 506
NG +++ + ++++ ++ G +TL +IP
Sbjct: 72 NGQSIINMPHADIVKLIKDAGLSVTLRIIP 101
Score = 51.3 bits (123), Expect = 3e-08
Identities = 18/94 (19%), Positives = 40/94 (42%), Gaps = 12/94 (12%)
Query: 347 IRELVLCKDASGLIGLRV----------CAINEGVFVCLVERGSPASLVG-LRFGDQILS 395
++V+ + + G + I + + GSPA L+ GD+IL+
Sbjct: 11 TSDVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILA 70
Query: 396 INGETVAGYNMKQVHKILKAAPVNNIRVVIRDRP 429
+NG+++ + K++K A ++ + I +
Sbjct: 71 VNGQSIINMPHADIVKLIKDAG-LSVTLRIIPQE 103
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 59.3 bits (143), Expect = 3e-09
Identities = 92/575 (16%), Positives = 159/575 (27%), Gaps = 194/575 (33%)
Query: 5 YPSLEDMTFHQLTIAQNEYFSKQTTSSSF-SSPPPPVYQTSSHTSPNAYNNPP-SP---- 58
+ SLE H L + +F F P P T A ++ P +P
Sbjct: 13 HGSLE----HVLLVPTASFFIASQLQEQFNKILPEP-------TEGFAADDEPTTPAELV 61
Query: 59 -----Y--HSANPPPYYQHPSVPS----------------HPSVPTFPSAPIYPSAPPQE 95
Y P Q V + H +E
Sbjct: 62 GKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKE 121
Query: 96 SHSPYYYSDIRANVPTGGSPVPS-------------YP----QGSYPSNPY--QAQNSYP 136
Y + I A P S QG+ ++ Y + ++ Y
Sbjct: 122 LIKNYITARIMAKRPFD-KKSNSALFRAVGEGNAQLVAIFGGQGN--TDDYFEELRDLY- 177
Query: 137 SVPNQPQAPNTYPSMPNQL--QAPNGFYPLTSSQQASQASLPYPINPLA--SNKPSAPQP 192
TY + L + L + ++ +N L N + P
Sbjct: 178 ---------QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTP-D 227
Query: 193 PAYSVQPSHNTAYPTAPLVPST-----IATAPSA--PPANIEDATRSTHPTTATAPSVPP 245
Y + + + PL+ + TA P + + T + +
Sbjct: 228 KDYLL-----SIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGA---TGHSQGLVT 279
Query: 246 AIHDATRSTPSPIIAPSVPPTNRDT-------IRSALVPLYPSLDNYMGLEVASELINAY 298
A+ IA + D+ +R A+ L+ ++G+ E AY
Sbjct: 280 AV----------AIAET------DSWESFFVSVRKAITVLF-----FIGVR-CYE---AY 314
Query: 299 AREN--AANERESDAAGNTVARQAPRDSCTMIAPLSSSGSGLKKAYVTNGIREL--VLCK 354
+ + +S V +P M LS S L + V + + + L
Sbjct: 315 PNTSLPPSILEDSLENNEGVP--SP-----M---LSISN--LTQEQVQDYVNKTNSHLPA 362
Query: 355 DASGLIGLRVCAINEG--VFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKI 412
I L +N G V G P SL GL + K
Sbjct: 363 GKQVEISL----VN-GAKNLVV---SGPPQSLYGLN------------------LTLRKA 396
Query: 413 LKAAP-VNNIRVVIRDRPLERTVTLHRDSSGHFG-----FH--FNKGQIVSLVKDSSAAR 464
KA ++ R+ +R L +R F FH + KD +
Sbjct: 397 -KAPSGLDQSRIPFSERKL---KFSNR-----FLPVASPFHSHLLVPASDLINKD--LVK 445
Query: 465 NGLLVNHNILEV------NGANVVGLKDKELLEAM 493
N + N +++ +G+++ L + E +
Sbjct: 446 NNVSFNAKDIQIPVYDTFDGSDLRVL-SGSISERI 479
Score = 47.7 bits (113), Expect = 1e-05
Identities = 31/171 (18%), Positives = 55/171 (32%), Gaps = 53/171 (30%)
Query: 273 SALVPLYPSLDNYMGLEVASELINAYARENAANERESDAAGNTVARQAPRDS-----CTM 327
+AL SL + M +E E++ + R G T+ PRD M
Sbjct: 1768 AALA----SLADVMSIESLVEVV--FYR------------GMTMQVAVPRDELGRSNYGM 1809
Query: 328 IAPLSSSGSGLKKAYVTNGIRELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVGL 387
IA + G ++A + RV G V +V
Sbjct: 1810 IA-------------INPGRVAASFSQEALQYVVERVGK-RTGWLVEIVNYNVE------ 1849
Query: 388 RFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHR 438
Q + G+ A + V +L + I ++ L+++++L
Sbjct: 1850 --NQQYV-AAGDLRA---LDTVTNVLNFIKLQKIDII----ELQKSLSLEE 1890
Score = 38.5 bits (89), Expect = 0.006
Identities = 52/320 (16%), Positives = 104/320 (32%), Gaps = 89/320 (27%)
Query: 229 ATRS---THPTTATAPSVPPAIH----------DATRSTPSPIIAPSVPPTNRDTIRSAL 275
+TR +H + VP A + P+ A P +
Sbjct: 5 STRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEP-------TTP 57
Query: 276 VPLYPSLDNYMGLEVASEL----INAYAR--ENAANERESDA-AGN---TVARQAPRDSC 325
L ++G V+S + + + + E E+ GN +A + +++
Sbjct: 58 AELVGK---FLGY-VSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQEND 113
Query: 326 TMIAPLSSSGSGLKKAYVTNGIRELVLCKDA-SGLIGLRVCAINEGVFVCLVERGSPASL 384
T L + +K + + K + S L R A+ EG A L
Sbjct: 114 T---TLVKTKELIKNYITARIMAKRPFDKKSNSAL--FR--AVGEG----------NAQL 156
Query: 385 VGLRFGDQILSINGETVAGYN-MKQVHKILKAAPVNNIRVVIR--DRPLERTVTLHRDSS 441
V + FG Q G T + ++ +++ + +I+ L + D+
Sbjct: 157 VAI-FGGQ-----GNTDDYFEELRDLYQTYHV----LVGDLIKFSAETLSELIRTTLDAE 206
Query: 442 GHFGFHFNKGQIVSLVKDSSAARN--------------GL--LVNHNILEVNGANVVGLK 485
F N I+ +++ S + G+ L ++ + A ++G
Sbjct: 207 KVFTQGLN---ILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVT----AKLLGFT 259
Query: 486 DKELLEAMEKGGSVLTLTLI 505
EL + KG + + L+
Sbjct: 260 PGELRSYL-KGATGHSQGLV 278
Score = 31.9 bits (72), Expect = 0.64
Identities = 23/124 (18%), Positives = 48/124 (38%), Gaps = 32/124 (25%)
Query: 420 NIRVVIRDRPLERTVTLHRDSSGHFGFHFNKGQIV-----SLVKDSSAARNGLLVNHNIL 474
+I ++ + P+ T+ HFG KG+ + +++ ++ +G L I
Sbjct: 1660 SILDIVINNPVNLTI--------HFGGE--KGKRIRENYSAMIFETIV--DGKLKTEKIF 1707
Query: 475 EVNGANVVGLK---DKELLEAMEKGGSVLT---LTLIPTSMYQHMMKKMSFNLVKDKMD- 527
+ + +K LL A + T LTL+ + ++ + K + D
Sbjct: 1708 KEINEHSTSYTFRSEKGLLSATQ-----FTQPALTLMEKAAFEDLKSK--GLIPADATFA 1760
Query: 528 -HSI 530
HS+
Sbjct: 1761 GHSL 1764
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; structural genomi consortium, SGC, ATP-binding, cell
junction; 1.60A {Homo sapiens}
Length = 88
Score = 53.1 bits (128), Expect = 3e-09
Identities = 15/84 (17%), Positives = 33/84 (39%), Gaps = 4/84 (4%)
Query: 347 IRELVLCKDASGL-IGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYN 405
+ + + K G + G V + GL+ GD I+ +N + V
Sbjct: 4 LITVHIVKGPMGFGFTIADSPGGGGQRVKQI--VDSPRSRGLKEGDLIVEVNKKNVQALT 61
Query: 406 MKQVHKILKAAPVNN-IRVVIRDR 428
QV +L +P + + ++++ +
Sbjct: 62 HNQVVDMLVESPKGSEVTLLVQRQ 85
Score = 52.7 bits (127), Expect = 4e-09
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 9/80 (11%)
Query: 432 RTVTLHRDSSGHFGFH-----FNKGQIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKD 486
TV + + G FGF GQ V + S GL I+EVN NV L
Sbjct: 5 ITVHIVKGPMG-FGFTIADSPGGGGQRVKQI-VDSPRSRGLKEGDLIVEVNKKNVQALTH 62
Query: 487 KELLEAMEKG--GSVLTLTL 504
++++ + + GS +TL +
Sbjct: 63 NQVVDMLVESPKGSEVTLLV 82
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone,
hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A
4a9g_A
Length = 436
Score = 58.1 bits (141), Expect = 3e-09
Identities = 36/160 (22%), Positives = 70/160 (43%), Gaps = 26/160 (16%)
Query: 368 NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVN-NIRV-VI 425
G FV V GS ++ G++ GD I S+NG+ + + ++ + +++ ++
Sbjct: 262 QRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLN--SFAELRSRIATTEPGTKVKLGLL 319
Query: 426 RD-RPLERTVTL----------HRDSSGHFGFHFNKGQ---------IVSLVKDSSAARN 465
R+ +PLE VTL + G + GQ I +VK S AA+
Sbjct: 320 RNGKPLEVEVTLDTSTSSSASAEMITPALEGATLSDGQLKDGGKGIKIDEVVKGSPAAQA 379
Query: 466 GLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLI 505
GL + I+ VN V + + + + + +++ L ++
Sbjct: 380 GLQKDDVIIGVNRDRVNSIAE--MRKVLAAKPAIIALQIV 417
Score = 49.6 bits (119), Expect = 2e-06
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 368 NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRD 427
+G+ + V +GSPA+ GL+ D I+ +N + V ++ ++ K+L A P I + I
Sbjct: 362 GKGIKIDEVVKGSPAAQAGLQKDDVIIGVNRDRVN--SIAEMRKVLAAKP-AIIALQIVR 418
Query: 428 RPLERTVTL 436
+ +
Sbjct: 419 GNESIYLLM 427
>2opg_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 1.50A
{Homo sapiens}
Length = 98
Score = 53.1 bits (128), Expect = 3e-09
Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 10/83 (12%)
Query: 431 ERTVTLHRDSSGHFGFHFNKGQ--------IVSLVKDSSAARNG-LLVNHNILEVNGANV 481
E T+ + + +G G G I + ++ +A ++G L ILEVNG ++
Sbjct: 5 ETTIEISKGRTG-LGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDL 63
Query: 482 VGLKDKELLEAMEKGGSVLTLTL 504
E + + + + LTL
Sbjct: 64 RKATHDEAINVLRQTPQRVRLTL 86
Score = 52.7 bits (127), Expect = 5e-09
Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 7/88 (7%)
Query: 347 IRELVLCKDASGLIGLRVC----AINEGVFVCLVERGSPASLVG-LRFGDQILSINGETV 401
+ + K +GL GL + + + + V A G L GDQIL +NG +
Sbjct: 5 ETTIEISKGRTGL-GLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDL 63
Query: 402 AGYNMKQVHKILKAAPVNNIRVVIRDRP 429
+ +L+ P +R+ +
Sbjct: 64 RKATHDEAINVLRQTP-QRVRLTLYRDE 90
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog;
PDZ domain, cellular signaling, structural genomics; NMR
{Mus musculus} SCOP: b.36.1.1
Length = 122
Score = 54.1 bits (130), Expect = 3e-09
Identities = 23/103 (22%), Positives = 45/103 (43%), Gaps = 9/103 (8%)
Query: 332 SSSGSGLKKAYVTNGIRELVLCKDASGLIGLRVC-------AINEGVFVCLVERGSPASL 384
SSGS V E+VL D G+++ ++ + +E SPA
Sbjct: 1 GSSGSSGAGQVVHTETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAER 60
Query: 385 VG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIR 426
G L+ GD++++ING ++ +++L+ + +V +
Sbjct: 61 CGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSS-ITSKVTLE 102
Score = 48.3 bits (115), Expect = 4e-07
Identities = 16/89 (17%), Positives = 27/89 (30%), Gaps = 12/89 (13%)
Query: 428 RPLERTVTLHRDSSGHFGF---------HFNKGQIV--SLVKDSSAARNGLL-VNHNILE 475
V L D FG + + DS A R G+L + ++
Sbjct: 13 HTETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMA 72
Query: 476 VNGANVVGLKDKELLEAMEKGGSVLTLTL 504
+NG +E + + +TL
Sbjct: 73 INGIPTEDSTFEEANQLLRDSSITSKVTL 101
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Length = 108
Score = 53.5 bits (129), Expect = 3e-09
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 12/93 (12%)
Query: 349 ELVLCKDASGLIGLRVC--------AINEGVFVCLVERGSPASLVG-LRFGDQILSINGE 399
EL KD S L G+ + G++V + GS A+L G + D+IL ++
Sbjct: 17 ELFREKDTSSL-GISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVDDV 75
Query: 400 TVAGYNMKQVHKILKAAPVNNIR-VVIRDRPLE 431
V G V ++L+ A N +R ++IR PL
Sbjct: 76 NVQGMAQSDVVEVLRNAG-NPVRLLLIRRLPLL 107
Score = 46.2 bits (110), Expect = 1e-06
Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 14/85 (16%)
Query: 433 TVTLHRDSSGHFGFHFNKGQ------------IVSLVKDSSAARNG-LLVNHNILEVNGA 479
+ +D+S G + + + SL+ S+AA +G + N IL V+
Sbjct: 17 ELFREKDTSS-LGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVDDV 75
Query: 480 NVVGLKDKELLEAMEKGGSVLTLTL 504
NV G+ +++E + G+ + L L
Sbjct: 76 NVQGMAQSDVVEVLRNAGNPVRLLL 100
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken
structural genomics/proteomics initiative, RSGI, protein
binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 53.6 bits (129), Expect = 3e-09
Identities = 23/116 (19%), Positives = 45/116 (38%), Gaps = 6/116 (5%)
Query: 333 SSGSGLKKAYVTNGIRELVLCKDASGLIGLRVC----AINEGVFVCLVERGSPASLVG-L 387
SSGS +G + + K +G+ + + + ++ S G L
Sbjct: 2 SSGSSGDTVANASGPLMVEIVKTPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGAL 61
Query: 388 RFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVT-LHRDSSG 442
GD ILSI+G ++ ++ + K+L + ++ +R + SSG
Sbjct: 62 HPGDHILSIDGTSMEHCSLLEATKLLASISEKVRLEILPVPQSQRPLRPSSGPSSG 117
Score = 49.0 bits (117), Expect = 2e-07
Identities = 13/86 (15%), Positives = 27/86 (31%), Gaps = 9/86 (10%)
Query: 432 RTVTLHRDSSGHFGFHFNKGQ--------IVSLVKDSSAARNGLL-VNHNILEVNGANVV 482
V + + G I + S R+G L +IL ++G ++
Sbjct: 17 LMVEIVKTPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSME 76
Query: 483 GLKDKELLEAMEKGGSVLTLTLIPTS 508
E + + + L ++P
Sbjct: 77 HCSLLEATKLLASISEKVRLEILPVP 102
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission,
protein binding; NMR {Rattus norvegicus}
Length = 113
Score = 53.5 bits (129), Expect = 4e-09
Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 11/96 (11%)
Query: 347 IRELVLCKDASGL----IGLRVCAI----NEGVFVCLVERGSPASLVG-LRFGDQILSIN 397
+ + L KD+ GL IG+ A G+FV V G A G ++ D ++ ++
Sbjct: 5 LFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVD 64
Query: 398 GETVAGYNMKQVHKILKAAPVNNIRVVI-RDRPLER 432
G ++ G +L+ +R +I R+RP E+
Sbjct: 65 GTSLVGVTQSFAASVLRNTK-GRVRFMIGRERPGEQ 99
Score = 52.8 bits (127), Expect = 6e-09
Identities = 16/86 (18%), Positives = 34/86 (39%), Gaps = 15/86 (17%)
Query: 433 TVTLHRDSSGHFGF---------HFNKGQ----IVSLVKDSSAARNG-LLVNHNILEVNG 478
V L +DS G G + + ++ + +A R+G + VN ++EV+G
Sbjct: 7 PVELEKDSEG-LGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDG 65
Query: 479 ANVVGLKDKELLEAMEKGGSVLTLTL 504
++VG+ + + +
Sbjct: 66 TSLVGVTQSFAASVLRNTKGRVRFMI 91
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide
binding protein; NMR {Drosophila melanogaster}
Length = 106
Score = 53.2 bits (128), Expect = 4e-09
Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 3/85 (3%)
Query: 347 IRELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYN 405
+ L K A +GL + G + + +G + L+ GD I NG+ + G
Sbjct: 3 KFNVDLMKKAGKELGLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLP 62
Query: 406 MKQVHKILKAAPVNNIR-VVIRDRP 429
+ + + K A + V R +P
Sbjct: 63 FQVCYALFKGAN-GKVSMEVTRPKP 86
Score = 48.5 bits (116), Expect = 2e-07
Identities = 11/79 (13%), Positives = 27/79 (34%), Gaps = 5/79 (6%)
Query: 431 ERTVTLHRDSSGHFGFHFNKGQ----IVSLVKDSSAARNGLL-VNHNILEVNGANVVGLK 485
+ V L + + G + + I L++ + L I + NG + GL
Sbjct: 3 KFNVDLMKKAGKELGLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLP 62
Query: 486 DKELLEAMEKGGSVLTLTL 504
+ + +++ +
Sbjct: 63 FQVCYALFKGANGKVSMEV 81
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR
{Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A
1vj6_A 1gm1_A 1ozi_A
Length = 96
Score = 52.6 bits (127), Expect = 5e-09
Identities = 20/90 (22%), Positives = 41/90 (45%), Gaps = 7/90 (7%)
Query: 346 GIRELVLCKDASGL---I--GLRVCAINEGVFVCLVERGSPASLVG-LRFGDQILSINGE 399
I E+ L K+ + L + G+ + G++V V A G + GD++L++NG
Sbjct: 5 DIFEVELAKNDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGV 64
Query: 400 TVAGYNMKQVHKILKAAPVNNIRVVIRDRP 429
++ G KQ + L+ + +++
Sbjct: 65 SLEGATHKQAVETLRNTG-QVVHLLLEKGQ 93
Score = 49.9 bits (120), Expect = 5e-08
Identities = 17/84 (20%), Positives = 34/84 (40%), Gaps = 12/84 (14%)
Query: 432 RTVTLHRDSSGHFGFHFNKGQ----------IVSLVKDSSAARNG-LLVNHNILEVNGAN 480
V L ++ + G G + +++ +A +G + +L VNG +
Sbjct: 7 FEVELAKNDNS-LGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVS 65
Query: 481 VVGLKDKELLEAMEKGGSVLTLTL 504
+ G K+ +E + G V+ L L
Sbjct: 66 LEGATHKQAVETLRNTGQVVHLLL 89
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil,
PDZ, guanine-nucleotide releasing factor,
phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Length = 132
Score = 53.8 bits (129), Expect = 5e-09
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 19/99 (19%)
Query: 429 PLERTVTLHRDSSGHFGFH------------------FNKGQIVSLVKDSSAA-RNGLLV 469
E+TV L + S FGF F Q + V + A R GL +
Sbjct: 26 IKEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRM 85
Query: 470 NHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPTS 508
++EVNG NVV + ++++ + +GG+ L + ++ +
Sbjct: 86 GDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVT 124
Score = 51.9 bits (124), Expect = 2e-08
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 365 CAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVV 424
A ++ V+ G A GLR GD ++ +NG+ V +QV +++ N + V
Sbjct: 61 PAFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGG-NTLMVK 119
Query: 425 IRDRP 429
+
Sbjct: 120 VVMVT 124
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger,
oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1
PDB: 1qav_B
Length = 112
Score = 52.9 bits (127), Expect = 6e-09
Identities = 22/100 (22%), Positives = 38/100 (38%), Gaps = 3/100 (3%)
Query: 347 IRELVLCKDASGLIGLRVC--AINEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAG 403
+ + L K G +G V V + + RG A G ++ GD IL++N +
Sbjct: 2 VISVRLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVD 61
Query: 404 YNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSSGH 443
+ ++L+ V+I P T L +G
Sbjct: 62 LSYDSALEVLRGIASETHVVLILRGPEGFTTHLETTFTGD 101
Score = 51.3 bits (123), Expect = 2e-08
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 7/81 (8%)
Query: 432 RTVTLHRDSSGHFGFHFNKGQ------IVSLVKDSSAARNGLL-VNHNILEVNGANVVGL 484
+V L + G GF + I L++ +A ++GL+ IL VN +V L
Sbjct: 3 ISVRLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDL 62
Query: 485 KDKELLEAMEKGGSVLTLTLI 505
LE + S + LI
Sbjct: 63 SYDSALEVLRGIASETHVVLI 83
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker,
structural genomics, struc genomics consortium, SGC,
structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 52.7 bits (127), Expect = 6e-09
Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 17/91 (18%)
Query: 431 ERTVTLHRDSSGHFGF---------------HFNKGQIVS-LVKDSSAARNGLL-VNHNI 473
R V L R+ S G +G + +++DS A +NG L I
Sbjct: 5 PRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRI 64
Query: 474 LEVNGANVVGLKDKELLEAMEKGGSVLTLTL 504
+EV+G ++ ++ +EA+ K G+ + +
Sbjct: 65 VEVDGMDLRDASHEQAVEAIRKAGNPVVFMV 95
Score = 47.4 bits (113), Expect = 4e-07
Identities = 19/92 (20%), Positives = 43/92 (46%), Gaps = 14/92 (15%)
Query: 348 RELVLCKDASGLIGLRV------------CAINEGVFVCLVERGSPASLVG-LRFGDQIL 394
R + L ++ S +G+ + + G+F+ V SPA G L+ GD+I+
Sbjct: 6 RRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIV 65
Query: 395 SINGETVAGYNMKQVHKILKAAPVNNIRVVIR 426
++G + + +Q + ++ A N + +++
Sbjct: 66 EVDGMDLRDASHEQAVEAIRKAG-NPVVFMVQ 96
>2awx_A Synapse associated protein 97; membrane protein, synaptic
signaling, trafficking protein; HET: HIS; 1.80A {Rattus
norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Length = 105
Score = 52.4 bits (126), Expect = 7e-09
Identities = 20/103 (19%), Positives = 43/103 (41%), Gaps = 10/103 (9%)
Query: 347 IRELVLCKDASGL-------IGLRVCAINEGVFVCLVERGSPASLVG-LRFGDQILSING 398
I E+ L K GL +G + + ++V + G A G L+ GD++L++N
Sbjct: 4 IMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNS 63
Query: 399 ETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSS 441
++ ++ LK + + + + +P ++ H
Sbjct: 64 VSLEEVTHEEAVTALKNTS-DFVYLKVA-KPTSMYISRHHHHH 104
Score = 47.7 bits (114), Expect = 4e-07
Identities = 19/93 (20%), Positives = 39/93 (41%), Gaps = 15/93 (16%)
Query: 432 RTVTLHRDSSGHFGFHFNKGQ------------IVSLVKDSSAARNG-LLVNHNILEVNG 478
+ L + G GF G + +++ +A ++G L + +L VN
Sbjct: 5 MEIKLIKGPKG-LGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNS 63
Query: 479 ANVVGLKDKELLEAMEKGGSVLTLTLI-PTSMY 510
++ + +E + A++ + L + PTSMY
Sbjct: 64 VSLEEVTHEEAVTALKNTSDFVYLKVAKPTSMY 96
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 124
Score = 52.8 bits (127), Expect = 8e-09
Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 7/101 (6%)
Query: 347 IRELVLCKDASGLIGLRVC----AINEGVFVCLVERGSPASLVG-LRFGDQILSINGETV 401
+ + L KD +GL GL + +FV + PA+ G +R GD++L IN + +
Sbjct: 26 LHIIELEKDKNGL-GLSLAGNKDRSRMSIFVVGINPEGPAAADGRMRIGDELLEINNQIL 84
Query: 402 AGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSSG 442
G + + I+K AP + +++V SSG
Sbjct: 85 YGRSHQNASAIIKTAP-SKVKLVFIRNEDAVNQMASGPSSG 124
Score = 47.1 bits (112), Expect = 9e-07
Identities = 16/98 (16%), Positives = 36/98 (36%), Gaps = 13/98 (13%)
Query: 419 NNIRVVIRDRPLE---RTVTLHRDSSGHFGFHFNKGQ--------IVSLVKDSSAARNG- 466
+ ++ R L + L +D +G G + +V + + AA +G
Sbjct: 11 TDQKIRQRYADLPGELHIIELEKDKNG-LGLSLAGNKDRSRMSIFVVGINPEGPAAADGR 69
Query: 467 LLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTL 504
+ + +LE+N + G + ++ S + L
Sbjct: 70 MRIGDELLEINNQILYGRSHQNASAIIKTAPSKVKLVF 107
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction,
structural genom structural genomics consortium, SGC,
signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A
3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A
Length = 102
Score = 51.9 bits (125), Expect = 9e-09
Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 10/99 (10%)
Query: 347 IRELVLCKDASGL-------IGLRVCAINEGVFVCLVERGSPASLVG-LRFGDQILSING 398
E+VL + SGL I + G+F+ + G A++ G L D +L +N
Sbjct: 5 YEEIVLERGNSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNE 64
Query: 399 ETVAGYNMKQVHKILKAAPVNNIRVVI-RDRPLERTVTL 436
V+ + + LK A +R+V+ R +P ++
Sbjct: 65 VDVSEVVHSRAVEALKEAG-PVVRLVVRRRQPPPEETSV 102
Score = 48.5 bits (116), Expect = 2e-07
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 14/85 (16%)
Query: 433 TVTLHRDSSGHFGFHFNKGQ------------IVSLVKDSSAARNGLL-VNHNILEVNGA 479
+ L R +SG GF G I ++ +AA +G L VN +L VN
Sbjct: 7 EIVLERGNSG-LGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEV 65
Query: 480 NVVGLKDKELLEAMEKGGSVLTLTL 504
+V + +EA+++ G V+ L +
Sbjct: 66 DVSEVVHSRAVEALKEAGPVVRLVV 90
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics,
structural genomics consortium, SGC, signaling protein;
1.40A {Homo sapiens}
Length = 92
Score = 51.5 bits (124), Expect = 1e-08
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
Query: 347 IRELVLCKDASGLIGLRVCA--INEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAG 403
+ L K +GL + + GVFV + +G A G L GDQIL +NGE V
Sbjct: 5 TLTIGLQKKPGKGLGLSIVGKRNDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRN 64
Query: 404 YNMKQVHKILKAAPVNNIRVVIRDRP 429
+ V +LK + + + + R
Sbjct: 65 ATQEAVAALLKCSL-GTVTLEVG-RI 88
Score = 51.1 bits (123), Expect = 1e-08
Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 7/80 (8%)
Query: 432 RTVTLHRDSSGHFGFHFNKGQ------IVSLVKDSSAARNG-LLVNHNILEVNGANVVGL 484
T+ L + G + + +VK A +G L+ IL VNG +V
Sbjct: 6 LTIGLQKKPGKGLGLSIVGKRNDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNA 65
Query: 485 KDKELLEAMEKGGSVLTLTL 504
+ + ++ +TL +
Sbjct: 66 TQEAVAALLKCSLGTVTLEV 85
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural
genomics, structural GEN consortium, SGC, structural
protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1
PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Length = 94
Score = 51.5 bits (124), Expect = 1e-08
Identities = 19/91 (20%), Positives = 39/91 (42%), Gaps = 10/91 (10%)
Query: 347 IRELVLCKDASGL-------IGLRVCAINEGVFVCLVERGSPASLVG-LRFGDQILSING 398
I E+ L K GL IG + + +++ + G A G L+ GD++L++N
Sbjct: 4 IMEVNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNN 63
Query: 399 ETVAGYNMKQVHKILKAAPVNNIRVVIRDRP 429
+ ++ LK + + + + +P
Sbjct: 64 TNLQDVRHEEAVASLKNTS-DMVYLKVA-KP 92
Score = 48.8 bits (117), Expect = 1e-07
Identities = 16/86 (18%), Positives = 36/86 (41%), Gaps = 14/86 (16%)
Query: 432 RTVTLHRDSSGHFGFHFNKGQ------------IVSLVKDSSAARNG-LLVNHNILEVNG 478
V L + G GF G I +++ +A ++G L + +L VN
Sbjct: 5 MEVNLLKGPKG-LGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNN 63
Query: 479 ANVVGLKDKELLEAMEKGGSVLTLTL 504
N+ ++ +E + +++ ++ L +
Sbjct: 64 TNLQDVRHEEAVASLKNTSDMVYLKV 89
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 124
Score = 52.2 bits (125), Expect = 1e-08
Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 10/103 (9%)
Query: 347 IRELVLCKDASGL-IGLRVC-----AINEGVFVCLVERGSPASLVG-LRFGDQILSINGE 399
+ E+ L + S +GL VC + G+++ ++ S A+ G +R GD+I+ ING
Sbjct: 20 LEEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGI 79
Query: 400 TVAGYNMKQVHKILKAAPVNNI-RVVIRDRPLERTVTLHRDSS 441
V N ++ +L + N ++ R + DS
Sbjct: 80 EV--QNREEAVALLTSEENKNFSLLIARPELQLDEGWMDDDSG 120
Score = 38.7 bits (90), Expect = 8e-04
Identities = 17/82 (20%), Positives = 31/82 (37%), Gaps = 11/82 (13%)
Query: 432 RTVTLHRDSSGH-FGFHFNKGQ---------IVSLVKDSSAARNG-LLVNHNILEVNGAN 480
V L+R +S G I + +S AA++G + I+++NG
Sbjct: 21 EEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIE 80
Query: 481 VVGLKDKELLEAMEKGGSVLTL 502
V ++ L E+ + L
Sbjct: 81 VQNREEAVALLTSEENKNFSLL 102
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural
genomics, mouse cDNA, riken structural
genomics/proteomics initiative; NMR {Mus musculus} SCOP:
b.36.1.1
Length = 126
Score = 52.2 bits (125), Expect = 2e-08
Identities = 20/100 (20%), Positives = 41/100 (41%), Gaps = 5/100 (5%)
Query: 347 IRELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYN 405
+ + L GL GL V + + + A+ G L+ GD ++S+ V GY
Sbjct: 28 VIQTKLTVGNLGL-GLVVIQNGPYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYT 86
Query: 406 MKQVHKILKAAPVNN-IRVVIRD--RPLERTVTLHRDSSG 442
+++ K+L+ + +++ + + SSG
Sbjct: 87 LREFLKLLQNITIGTVLQIKAYRGFLEIPQEWQDSGPSSG 126
Score = 47.6 bits (113), Expect = 7e-07
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 8/79 (10%)
Query: 433 TVTLHRDSSGHFGFHFNKG----QIVSLVKDSSAARNG-LLVNHNILEVNGANVVGLKDK 487
L + G G + QI L+ +AA +G L ++ V ANV+G +
Sbjct: 30 QTKLTVGNLG-LGLVVIQNGPYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLR 88
Query: 488 ELLEAME--KGGSVLTLTL 504
E L+ ++ G+VL +
Sbjct: 89 EFLKLLQNITIGTVLQIKA 107
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 51.7 bits (124), Expect = 2e-08
Identities = 20/109 (18%), Positives = 36/109 (33%), Gaps = 9/109 (8%)
Query: 332 SSSGSGLKKAYVTNGIRELVLCKDASGLIGLRV--------CAINEGVFVCLVERGSPAS 383
SSG + R+ + +G+R+ + G ++ + G A
Sbjct: 4 GSSGHYIFPHARIKITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAE 63
Query: 384 LVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLE 431
G L G Q+L NG + ++V I+ V D +
Sbjct: 64 QTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQSGEAEICVRLDLNMS 112
Score = 42.8 bits (101), Expect = 2e-05
Identities = 15/88 (17%), Positives = 28/88 (31%), Gaps = 13/88 (14%)
Query: 430 LERTVTLHRDSSGHFGFHFNKGQ------------IVSLVKDSSAARNGLL-VNHNILEV 476
+ R H S G G+ I ++ SA + G L +LE
Sbjct: 18 ITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEW 77
Query: 477 NGANVVGLKDKELLEAMEKGGSVLTLTL 504
NG + +E+ + + + +
Sbjct: 78 NGIPLTSKTYEEVQSIISQQSGEAEICV 105
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics,
alternative splicing, cell cycle, cell division, cell
junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A
Length = 111
Score = 51.2 bits (123), Expect = 2e-08
Identities = 17/88 (19%), Positives = 40/88 (45%), Gaps = 9/88 (10%)
Query: 347 IRELVLCKDASGLIGLRV------CAINEGVFVCLVERGSPASLVG-LRFGDQILSINGE 399
+ L K GL G + + ++V + A G L+ GD+++ +NG
Sbjct: 12 RLNIQLKKGTEGL-GFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGV 70
Query: 400 TVAGYNMKQVHKILKAAPVNN-IRVVIR 426
+AG + ++V +L++ + + +++
Sbjct: 71 DLAGKSQEEVVSLLRSTKMEGTVSLLVF 98
Score = 44.6 bits (106), Expect = 5e-06
Identities = 15/86 (17%), Positives = 37/86 (43%), Gaps = 12/86 (13%)
Query: 431 ERTVTLHRDSSGHFGF---------HFNKG-QIVSLVKDSSAARNG-LLVNHNILEVNGA 479
+ L + + G GF + + +++ +A ++G L ++EVNG
Sbjct: 12 RLNIQLKKGTEG-LGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGV 70
Query: 480 NVVGLKDKELLEAMEKGGSVLTLTLI 505
++ G +E++ + T++L+
Sbjct: 71 DLAGKSQEEVVSLLRSTKMEGTVSLL 96
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 116
Score = 51.6 bits (124), Expect = 2e-08
Identities = 29/117 (24%), Positives = 45/117 (38%), Gaps = 8/117 (6%)
Query: 332 SSSGSGLKKAYVTNG-IRELVLCKDASGLIGLRVC----AINEGVFVCLVERGSPASLVG 386
SS SG + G + + K SGL GL + + + V A+ G
Sbjct: 2 SSGSSGPATCPIVPGQEMIIEISKGRSGL-GLSIVGGKDTPLNAIVIHEVYEEGAAARDG 60
Query: 387 -LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSSG 442
L GDQIL +NG + + ++ L+ P +R+V+ SSG
Sbjct: 61 RLWAGDQILEVNGVDLRNSSHEEAITALRQTP-QKVRLVVYRDEAHYRDEESGPSSG 116
Score = 48.5 bits (116), Expect = 2e-07
Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 10/83 (12%)
Query: 431 ERTVTLHRDSSGHFGFHFNKGQ--------IVSLVKDSSAARNG-LLVNHNILEVNGANV 481
E + + + SG G G+ I + ++ +AAR+G L ILEVNG ++
Sbjct: 18 EMIIEISKGRSG-LGLSIVGGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDL 76
Query: 482 VGLKDKELLEAMEKGGSVLTLTL 504
+E + A+ + + L +
Sbjct: 77 RNSSHEEAITALRQTPQKVRLVV 99
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain,
RAB3-interacting molecule, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Length = 131
Score = 51.7 bits (124), Expect = 3e-08
Identities = 24/105 (22%), Positives = 51/105 (48%), Gaps = 8/105 (7%)
Query: 330 PLSSSGSGLKKAYVTNGIRELVLCKDASGLIGLRVC------AINEGVFVCLVERGSPAS 383
P + + + +++ + +D+ ++GL+V + F+ V++GS A
Sbjct: 20 PSKDGDRLIGRILLNKRLKDGSVPRDSGAMLGLKVVGGKMTESGRLCAFITKVKKGSLAD 79
Query: 384 LVG-LRFGDQILSINGETVAGYNMKQVHKILKAA-PVNNIRVVIR 426
VG LR GD++L NG + G ++V+ I+ + P + +V+
Sbjct: 80 TVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELVVS 124
Score = 40.9 bits (96), Expect = 1e-04
Identities = 21/103 (20%), Positives = 36/103 (34%), Gaps = 14/103 (13%)
Query: 417 PVNNIRVVIRDRPLER---TVTLHRDSSGHFGFHFNKGQ----------IVSLVKDSSAA 463
P + +I L + ++ RDS G G+ I + K S A
Sbjct: 20 PSKDGDRLIGRILLNKRLKDGSVPRDSGAMLGLKVVGGKMTESGRLCAFITKVKKGSLAD 79
Query: 464 RNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLI 505
G L +LE NG + G +E+ + + + L+
Sbjct: 80 TVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELV 122
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein
3; structural genomics consortium, SGC, PDZ domain,
signaling P; 1.60A {Homo sapiens}
Length = 113
Score = 51.0 bits (122), Expect = 3e-08
Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 7/92 (7%)
Query: 347 IRELVLCKDASGLIGLRVCAINEGVFV-CLVERGSPASLVGLRFGDQILSINGETVAGYN 405
+ + L K G G + G V +++ GL+ GD I I + V
Sbjct: 13 LVTIPLIKGPKGF-GFAIADSPTGQKVKMILDSQWCQ---GLQKGDIIKEIYHQNVQNLT 68
Query: 406 MKQVHKILKAAPVNNIR--VVIRDRPLERTVT 435
QV ++LK PV +++R P T T
Sbjct: 69 HLQVVEVLKQFPVGADVPLLILRGGPPSPTKT 100
Score = 44.4 bits (105), Expect = 6e-06
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 426 RDRPLERTVTLHRDSSGHFGFH---FNKGQIVSLVKDSSAARNGLLVNHNILEVNGANVV 482
+ L T+ L + G FGF GQ V ++ DS + GL I E+ NV
Sbjct: 8 KKAGLLVTIPLIKGPKG-FGFAIADSPTGQKVKMILDSQWCQ-GLQKGDIIKEIYHQNVQ 65
Query: 483 GLKDKELLEAMEK--GGSVLTLTL 504
L +++E +++ G+ + L +
Sbjct: 66 NLTHLQVVEVLKQFPVGADVPLLI 89
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 123
Score = 51.3 bits (123), Expect = 3e-08
Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 7/92 (7%)
Query: 347 IRELVLCKDASGLIGLRVC---AINEGVFVCLVERGSPASLVG-LRFGDQILSINGETVA 402
L K G G + +E + V V PA+ G + GD I+ IN V
Sbjct: 20 FLSTTLKKSNMGF-GFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVL 78
Query: 403 GYNMKQVHKILKAAPVNNI--RVVIRDRPLER 432
G+ V K+ ++ P+ V+ R PL
Sbjct: 79 GHTHADVVKLFQSVPIGQSVNLVLCRGYPLPF 110
Score = 43.9 bits (104), Expect = 1e-05
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 11/84 (13%)
Query: 431 ERTVTLHRDSSGHFGFHFNKG-------QIVSLVKDSSAARNG-LLVNHNILEVNGANVV 482
+ TL + + G FGF G Q+ S++ D AA++G + I+ +N V+
Sbjct: 20 FLSTTLKKSNMG-FGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVL 78
Query: 483 GLKDKELLEAME--KGGSVLTLTL 504
G ++++ + G + L L
Sbjct: 79 GHTHADVVKLFQSVPIGQSVNLVL 102
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid
module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4
Length = 113
Score = 50.8 bits (122), Expect = 3e-08
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Query: 358 GLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAP 417
L + GV + V GSPA GLR GD IL+I + V N + V++ ++
Sbjct: 24 QLREPSFPDVQHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQ--NAEDVYEAVRTQS 81
Query: 418 VNNIRVVIRDRPLERTVTL 436
+++ L VT
Sbjct: 82 QLAVQIRRGRETLTLYVTP 100
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 105
Score = 50.4 bits (121), Expect = 4e-08
Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 10/95 (10%)
Query: 344 TNGIRELVLCKDASGL----IGLRVCAI----NEGVFVCLVERGSPASLVG-LRFGDQIL 394
++G L + GL G + + G+FV + G A G L+ GD++L
Sbjct: 5 SSGRHVACLARSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVL 64
Query: 395 SINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRP 429
SING V +L AA I +++
Sbjct: 65 SINGVDVTEARHDHAVSLLTAAS-PTIALLLEREA 98
Score = 48.5 bits (116), Expect = 2e-07
Identities = 17/88 (19%), Positives = 29/88 (32%), Gaps = 15/88 (17%)
Query: 431 ERTVTLHRDSSGHFGF---------HFNKGQ----IVSLVKDSSAARNGLL-VNHNILEV 476
L R G GF + G + + + +A R G L V +L +
Sbjct: 8 RHVACLARSERG-LGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSI 66
Query: 477 NGANVVGLKDKELLEAMEKGGSVLTLTL 504
NG +V + + + + L L
Sbjct: 67 NGVDVTEARHDHAVSLLTAASPTIALLL 94
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Length = 118
Score = 50.5 bits (121), Expect = 4e-08
Identities = 24/109 (22%), Positives = 37/109 (33%), Gaps = 10/109 (9%)
Query: 332 SSSGSGLKKAYVTNGIRELVLCKDASGLIGLRVCA----INEGVFVCLVERGSPASLVG- 386
+ + + L+ K L L + V V V G A G
Sbjct: 3 EGAATMFSPEQIAGKDVRLLRIKKEGSL-DLALEGGVDSPVGKVVVSAVYEGGAAERHGG 61
Query: 387 LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIR----VVIRDRPLE 431
+ GD+I++ING+ V Y + + L+ A VV P E
Sbjct: 62 VVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAVCPPKE 110
Score = 38.2 bits (89), Expect = 0.001
Identities = 14/87 (16%), Positives = 31/87 (35%), Gaps = 14/87 (16%)
Query: 431 ERTVTLHRDSSGHFGFHFNKGQ--------IVSLVKDSSAARNG-LLVNHNILEVNGANV 481
+ + + G + ++ + +A R+G ++ I+ +NG V
Sbjct: 18 DVRLLRIKKEGS-LDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIV 76
Query: 482 VGLKDKE----LLEAMEKGGSVLTLTL 504
E L +A +GG + L +
Sbjct: 77 TDYTLAEAEAALQKAWNQGGDWIDLVV 103
>2edp_A Fragment, shroom family member 4; APX/shroom family member,
KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 100
Score = 50.0 bits (120), Expect = 4e-08
Identities = 24/102 (23%), Positives = 45/102 (44%), Gaps = 13/102 (12%)
Query: 332 SSSGSGLKKAYVTNGIRELVLCKDASGLIGLRV---CAINEGVFVCLVERGSPASLVG-L 387
SS SG YV V + + G + E + V +E G A+L +
Sbjct: 2 SSGSSGGSFQYVP------VQLQGGAPW-GFTLKGGLEHCEPLTVSKIEDGGKAALSQKM 54
Query: 388 RFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRP 429
R GD++++ING + G + ++K + +++++R R
Sbjct: 55 RTGDELVNINGTPLYGSRQ-EALILIKGSF-RILKLIVRRRN 94
Score = 39.2 bits (92), Expect = 3e-04
Identities = 14/86 (16%), Positives = 30/86 (34%), Gaps = 9/86 (10%)
Query: 427 DRPLERTVTLHRDSSGHFGFH------FNKGQIVS-LVKDSSAARNG-LLVNHNILEVNG 478
+ V + +GF + VS + AA + + ++ +NG
Sbjct: 6 SGGSFQYVPVQLQGGAPWGFTLKGGLEHCEPLTVSKIEDGGKAALSQKMRTGDELVNING 65
Query: 479 ANVVGLKDKELLEAMEKGGSVLTLTL 504
+ G + E L ++ +L L +
Sbjct: 66 TPLYGSRQ-EALILIKGSFRILKLIV 90
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; PDZ domain, ATP-binding, cell junction, cell
membrane; NMR {Homo sapiens} PDB: 2kpl_A
Length = 129
Score = 50.9 bits (122), Expect = 4e-08
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 7/91 (7%)
Query: 347 IRELVLCKDASGLIGLRVC---AINEGVFVCLVERGSPASLVG-LRFGDQILSINGETVA 402
L K + G G V +E + + + PA+L G + GD I+S+N V
Sbjct: 19 FIHTKLRKSSRGF-GFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVL 77
Query: 403 GYNMKQVHKILKAAPVNNIR--VVIRDRPLE 431
G+ QV KI ++ P+ + R PL
Sbjct: 78 GHTHAQVVKIFQSIPIGASVDLELCRGYPLP 108
Score = 43.6 bits (103), Expect = 2e-05
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 11/84 (13%)
Query: 431 ERTVTLHRDSSGHFGFHFNKG-------QIVSLVKDSSAARNG-LLVNHNILEVNGANVV 482
L + S G FGF G QI SLV D AA +G + I+ VN V+
Sbjct: 19 FIHTKLRKSSRG-FGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVL 77
Query: 483 GLKDKELLEAME--KGGSVLTLTL 504
G ++++ + G+ + L L
Sbjct: 78 GHTHAQVVKIFQSIPIGASVDLEL 101
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor,
PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Length = 130
Score = 51.0 bits (122), Expect = 4e-08
Identities = 22/124 (17%), Positives = 53/124 (42%), Gaps = 9/124 (7%)
Query: 319 QAPRDSCTMIAPLSSSGSGLKKAYVTNGIRELVLCKDASGLIGLRV------CAINEGVF 372
+ + + ++S ++ + + L K ++GL G + ++ +
Sbjct: 3 DLNSSTDSAASASAASDVSVEST-AEATVCTVTLEKMSAGL-GFSLEGGKGSLHGDKPLT 60
Query: 373 VCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLE 431
+ + +G+ + ++ GD+IL + G + G + I+KA P + +VIR + L+
Sbjct: 61 INRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRKSLQ 120
Query: 432 RTVT 435
T
Sbjct: 121 SKET 124
Score = 39.8 bits (93), Expect = 4e-04
Identities = 18/86 (20%), Positives = 36/86 (41%), Gaps = 13/86 (15%)
Query: 431 ERTVTLHRDSSGHFGFHFNKGQ----------IVSLVKDSSAARNG-LLVNHNILEVNGA 479
TVTL + S+G GF G+ I + K +++ ++ + IL++ G
Sbjct: 30 VCTVTLEKMSAG-LGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGT 88
Query: 480 NVVGLKDKELLEAMEKGGS-VLTLTL 504
+ GL E ++ +T+ +
Sbjct: 89 AMQGLTRFEAWNIIKALPDGPVTIVI 114
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 50.4 bits (121), Expect = 5e-08
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 11/93 (11%)
Query: 347 IRELVLCKDASGL----IGLRVCAI----NEGVFVCLVERGSPASLVG-LRFGDQILSIN 397
+ + L KD GL IG+ V A G+FV V G A G ++ DQI+ ++
Sbjct: 10 LFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVD 69
Query: 398 GETVAGYNMKQVHKILKAAPVNNIR-VVIRDRP 429
G ++ G +L+ N+R V+ R++P
Sbjct: 70 GISLVGVTQNFAATVLRNTK-GNVRFVIGREKP 101
Score = 49.6 bits (119), Expect = 9e-08
Identities = 16/86 (18%), Positives = 33/86 (38%), Gaps = 15/86 (17%)
Query: 433 TVTLHRDSSGHFGF---------HFNKGQ----IVSLVKDSSAARNG-LLVNHNILEVNG 478
V L +D G G + + ++ + +A R+G + VN I+EV+G
Sbjct: 12 PVELEKDEDG-LGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDG 70
Query: 479 ANVVGLKDKELLEAMEKGGSVLTLTL 504
++VG+ + + +
Sbjct: 71 ISLVGVTQNFAATVLRNTKGNVRFVI 96
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural
proteomics in europe, spine, structural genomics,
hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 108
Score = 50.0 bits (120), Expect = 5e-08
Identities = 20/97 (20%), Positives = 40/97 (41%), Gaps = 12/97 (12%)
Query: 346 GIRELVLCKDASGL----------IGLRVCAINEGVFVCLVERGSPASLVG-LRFGDQIL 394
I E+ L K+ + L G+ + G++V V A G + GD++L
Sbjct: 9 DIFEVELAKNDNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVL 68
Query: 395 SINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLE 431
++NG ++ G KQ + L+ + +++
Sbjct: 69 AVNGVSLEGATHKQAVETLRNTG-QVVHLLLEKGQSP 104
Score = 48.1 bits (115), Expect = 3e-07
Identities = 16/90 (17%), Positives = 33/90 (36%), Gaps = 17/90 (18%)
Query: 431 ERTVTLHRDSSGHFGFHFNKGQ---------------IVSLVKDSSAARNG-LLVNHNIL 474
V L ++ + G + +++ +A +G + +L
Sbjct: 10 IFEVELAKNDNS-LGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVL 68
Query: 475 EVNGANVVGLKDKELLEAMEKGGSVLTLTL 504
VNG ++ G K+ +E + G V+ L L
Sbjct: 69 AVNGVSLEGATHKQAVETLRNTGQVVHLLL 98
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell
projection, disease mutation, membrane, phosphoprotein,
polymorphism; NMR {Homo sapiens}
Length = 216
Score = 52.5 bits (125), Expect = 5e-08
Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 2/94 (2%)
Query: 348 RELVLCKDASGL-IGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNM 406
R + K SG L G F+ V+ SPA GLR D+I+ +NG + G
Sbjct: 11 RLCTMKKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQH 70
Query: 407 KQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDS 440
V ++A + ++++ DR + R
Sbjct: 71 GDVVSAIRAGG-DETKLLVVDRETDEFFKKCRVI 103
Score = 49.8 bits (118), Expect = 4e-07
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 7/90 (7%)
Query: 432 RTVTLHRDSSGHFGFHF-----NKGQIVSLV-KDSSAARNGLLVNHNILEVNGANVVGLK 485
R T+ + SG +GF+ GQ + V DS A +GL I+EVNG + G +
Sbjct: 11 RLCTMKKGPSG-YGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQ 69
Query: 486 DKELLEAMEKGGSVLTLTLIPTSMYQHMMK 515
+++ A+ GG L ++ + K
Sbjct: 70 HGDVVSAIRAGGDETKLLVVDRETDEFFKK 99
>2fne_A Multiple PDZ domain protein; structural protein, structural
genomics, SGC, structural genomics consortium, unknown
function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 50.4 bits (121), Expect = 5e-08
Identities = 22/110 (20%), Positives = 44/110 (40%), Gaps = 12/110 (10%)
Query: 406 MKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSSGHFGF---------HFNKGQIVS- 455
M H + + + P +++TL R G GF H + V
Sbjct: 1 MHHHHHHSSGVDLGTENLYFQSMPQCKSITLERGPDG-LGFSIVGGYGSPHGDLPIYVKT 59
Query: 456 LVKDSSAARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTL 504
+ +A+ +G L I+ VNG ++ G+ +E + +++ +TL +
Sbjct: 60 VFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMV 109
Score = 50.0 bits (120), Expect = 6e-08
Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 11/108 (10%)
Query: 332 SSSGSGLKKAYVTN----GIRELVLCKDASGL---I--GLRVCAINEGVFVCLVERGSPA 382
SSG L + + + L + GL I G + ++V V A
Sbjct: 7 HSSGVDLGTENLYFQSMPQCKSITLERGPDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAA 66
Query: 383 SLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRP 429
S G L+ GDQI+++NG+++ G ++ ILK + +++
Sbjct: 67 SEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTK-GTVTLMVLSSD 113
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high
affinity ligand, protein BIND; 1.70A {Homo sapiens}
Length = 112
Score = 50.0 bits (120), Expect = 7e-08
Identities = 13/79 (16%), Positives = 32/79 (40%), Gaps = 2/79 (2%)
Query: 358 GLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAP 417
++ G++V V SP+ G++ GD I+ +NG + + ++ + +
Sbjct: 24 KASNPDFPEVSSGIYVQEVAPNSPSQRGGIQDGDIIVKVNGRPLV--DSSELQEAVLTES 81
Query: 418 VNNIRVVIRDRPLERTVTL 436
+ V + L ++
Sbjct: 82 PLLLEVRRGNDDLLFSIAP 100
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large
homolog 2, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 91
Score = 49.4 bits (118), Expect = 7e-08
Identities = 18/85 (21%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Query: 346 GIRELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGY 404
R + + K A +G+ + + + G + G L GD I +NG+ V G
Sbjct: 6 SGRMVGIRKTAGEHLGVTFRVEGGELVIARILHGGMVAQQGLLHVGDIIKEVNGQPV-GS 64
Query: 405 NMKQVHKILKAAPVNNIRVVIRDRP 429
+ + + ++L+ A ++ + I P
Sbjct: 65 DPRALQELLRNAS-GSVILKILSGP 88
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell
adhesion; 2.90A {Homo sapiens}
Length = 468
Score = 53.8 bits (128), Expect = 8e-08
Identities = 31/121 (25%), Positives = 45/121 (37%), Gaps = 17/121 (14%)
Query: 350 LVLCKDASGLIGLRVCAINE-GVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQ 408
LV + + GLR+ N+ G+FV V SPA+ GL GDQIL +N ++
Sbjct: 4 LVKFRKGDSV-GLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREE 62
Query: 409 VHKILKAA-------------PVNNIRVVIRDRPLERTVTLHRDSSGHF--GFHFNKGQI 453
L R+V D + H + G FNKG++
Sbjct: 63 AVLFLLDLPKGEEVTILAQKKKDVYRRIVESDVGDSFYIRTHFEYEKESPYGLSFNKGEV 122
Query: 454 V 454
Sbjct: 123 F 123
Score = 39.5 bits (91), Expect = 0.002
Identities = 17/103 (16%), Positives = 36/103 (34%), Gaps = 7/103 (6%)
Query: 432 RTVTLHRDSSGHFGFHF----NKGQIVSLV-KDSSAARNGLLVNHNILEVNGANVVGLKD 486
+ V + G + G V+ V +DS AA+ GL IL VN + +
Sbjct: 3 KLVKFRK--GDSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIR 60
Query: 487 KELLEAMEKGGSVLTLTLIPTSMYQHMMKKMSFNLVKDKMDHS 529
+E + + +T++ + + ++ +
Sbjct: 61 EEAVLFLLDLPKGEEVTILAQKKKDVYRRIVESDVGDSFYIRT 103
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein;
structural protein-hydrolase complex, peptide binding
protei; NMR {Homo sapiens}
Length = 112
Score = 49.4 bits (118), Expect = 1e-07
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 5/85 (5%)
Query: 346 GIRELVLCKDASGLIGLRV---CAINEGVFVCLVERGSPASLVG-LRFGDQILSINGETV 401
GIR+++L K+ +G+ + + + + G PA G L GD IL++NG +
Sbjct: 27 GIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNL 86
Query: 402 AGYNMKQVHKILKAAPVNNIRVVIR 426
K+ IL I +
Sbjct: 87 RDTKHKEAVTILSQQR-GEIEFEVV 110
Score = 46.3 bits (110), Expect = 1e-06
Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 8/82 (9%)
Query: 431 ERTVTLHRDSSGHFGF------HFNKGQIVS-LVKDSSAARNGLL-VNHNILEVNGANVV 482
R V L ++ G ++S + A R G L V IL VNG N+
Sbjct: 28 IRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLR 87
Query: 483 GLKDKELLEAMEKGGSVLTLTL 504
K KE + + + + +
Sbjct: 88 DTKHKEAVTILSQQRGEIEFEV 109
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain,
structural genomics, structural genom consortium, SGC,
phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 49.7 bits (119), Expect = 1e-07
Identities = 19/93 (20%), Positives = 38/93 (40%), Gaps = 10/93 (10%)
Query: 347 IRELVLCKDASGL-------IGLRVCAINEGVFVCLVERGSPASLVG-LRFGDQILSING 398
+ E+ L K GL +G + + ++V + G A G L+ GD++L +N
Sbjct: 25 VVEIKLFKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNN 84
Query: 399 ETVAGYNMKQVHKILKAAPVNNIR-VVIRDRPL 430
++ ++ ILK + V + +
Sbjct: 85 YSLEEVTHEEAVAILKNTS-EVVYLKVGKPTTI 116
Score = 47.8 bits (114), Expect = 5e-07
Identities = 18/92 (19%), Positives = 38/92 (41%), Gaps = 15/92 (16%)
Query: 433 TVTLHRDSSGHFGFHFNKGQ------------IVSLVKDSSAARNG-LLVNHNILEVNGA 479
+ L + G GF G + ++ +A ++G L V +L VN
Sbjct: 27 EIKLFKGPKG-LGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNY 85
Query: 480 NVVGLKDKELLEAMEKGGSVLTLTLI-PTSMY 510
++ + +E + ++ V+ L + PT++Y
Sbjct: 86 SLEEVTHEEAVAILKNTSEVVYLKVGKPTTIY 117
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase
binding domain, signaling protein; HET: GNP; 2.10A {Mus
musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A
2lc7_A 1rzx_A
Length = 128
Score = 49.8 bits (119), Expect = 1e-07
Identities = 26/96 (27%), Positives = 36/96 (37%), Gaps = 18/96 (18%)
Query: 431 ERTVTLHRDSSGH-FGF---------------HFNKGQIVS-LVKDSSAARNGLL-VNHN 472
R V L + + GF G +S LV A GLL VN
Sbjct: 30 HRRVRLCKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDE 89
Query: 473 ILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPTS 508
+LEVNG V G ++ + M L +T+ P +
Sbjct: 90 VLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPAN 125
Score = 49.1 bits (117), Expect = 2e-07
Identities = 25/123 (20%), Positives = 46/123 (37%), Gaps = 15/123 (12%)
Query: 318 RQAPRDSCTMIAPLSSSGSGLKKAYVTNGIRELVLCKDASG-------------LIGLRV 364
R+ P +M S + + R + LCK + +
Sbjct: 1 RKKPHIVISMPQDFRPVSSIIDVDILPETHRRVRLCKYGTEKPLGFYIRDGSSVRVTPHG 60
Query: 365 CAINEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRV 423
G+F+ + G A G L D++L +NG V+G ++ QV ++ A N+ +
Sbjct: 61 LEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANS-RNLII 119
Query: 424 VIR 426
+R
Sbjct: 120 TVR 122
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI,
structural genomics, alternative splicing, cell cycle,
cell division, cell junction; NMR {Homo sapiens}
Length = 121
Score = 49.7 bits (119), Expect = 1e-07
Identities = 17/93 (18%), Positives = 41/93 (44%), Gaps = 10/93 (10%)
Query: 347 IRELVLCKDASGLIGLRV------CAINEGVFVCLVERGSPASLVG-LRFGDQILSINGE 399
+ L K GL G + + ++V + A G L+ GD+++ +NG
Sbjct: 31 RLNIQLKKGTEGL-GFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGV 89
Query: 400 TVAGYNMKQVHKILKAAPVNN-IRVVIRDRPLE 431
+ G + ++V +L++ + + +++ R +
Sbjct: 90 DLVGKSQEEVVSLLRSTKMEGTVSLLVF-RQED 121
Score = 42.8 bits (101), Expect = 2e-05
Identities = 16/91 (17%), Positives = 38/91 (41%), Gaps = 12/91 (13%)
Query: 426 RDRPLERTVTLHRDSSGHFGFHFNKG----------QIVSLVKDSSAARNG-LLVNHNIL 474
+ + L + + G GF + +++ +A ++G L ++
Sbjct: 26 KKIGKRLNIQLKKGTEG-LGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLI 84
Query: 475 EVNGANVVGLKDKELLEAMEKGGSVLTLTLI 505
EVNG ++VG +E++ + T++L+
Sbjct: 85 EVNGVDLVGKSQEEVVSLLRSTKMEGTVSLL 115
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 96
Score = 48.9 bits (117), Expect = 1e-07
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 6/82 (7%)
Query: 347 IRELVLCKDASGLIGLRVCAINEGVFV-CLVERGSPASLVGLRFGDQILSINGETVAGYN 405
+ L + K A G G + G V +++ GL GD I+ IN + V +
Sbjct: 11 LMTLTIVKGAQGF-GFTIADSPTGQRVKQILDIQGCP---GLCEGDLIVEINQQNVQNLS 66
Query: 406 MKQVHKILKAAPVNN-IRVVIR 426
+V ILK P+ + ++I
Sbjct: 67 HTEVVDILKDCPIGSETSLIIH 88
Score = 45.8 bits (109), Expect = 1e-06
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 7/82 (8%)
Query: 428 RPLERTVTLHRDSSGHFGFHF---NKGQIVSLVKDSSAARNGLLVNHNILEVNGANVVGL 484
+ T+T+ + + G FGF GQ V + D GL I+E+N NV L
Sbjct: 8 QAELMTLTIVKGAQG-FGFTIADSPTGQRVKQILDIQGCP-GLCEGDLIVEINQQNVQNL 65
Query: 485 KDKELLEAMEKG--GSVLTLTL 504
E+++ ++ GS +L +
Sbjct: 66 SHTEVVDILKDCPIGSETSLII 87
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus
interaction, structural genomics consortium,
synaptosome, tight junction; 1.7A {Homo sapiens} PDB:
2iwp_A
Length = 120
Score = 49.3 bits (118), Expect = 1e-07
Identities = 25/113 (22%), Positives = 48/113 (42%), Gaps = 12/113 (10%)
Query: 332 SSSGSGLK---KAYVTNGIRELVLCKDASGLIGLRV------CAINEGVFVCLVERGSPA 382
SSG L + + G+R + + K + +G+ + + +F+ ++ A
Sbjct: 7 HSSGVDLGTENLYFQSMGLRTVEMKKGPTDSLGISIAGGVGSPLGDVPIFIAMMHPTGVA 66
Query: 383 SLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIR-VVIRDRPLERT 433
+ LR GD+I++I G + G Q +LK A +I V+ + T
Sbjct: 67 AQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLKNAS-GSIEMQVVAGGDVSET 118
Score = 48.9 bits (117), Expect = 2e-07
Identities = 13/86 (15%), Positives = 30/86 (34%), Gaps = 11/86 (12%)
Query: 432 RTVTLHRDSSGHFGFHFNKGQ----------IVSLVKDSSAARNGLL-VNHNILEVNGAN 480
RTV + + + G G I + AA+ L V I+ + G +
Sbjct: 26 RTVEMKKGPTDSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTS 85
Query: 481 VVGLKDKELLEAMEKGGSVLTLTLIP 506
G+ + + ++ + + ++
Sbjct: 86 TEGMTHTQAVNLLKNASGSIEMQVVA 111
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 111
Score = 48.9 bits (117), Expect = 1e-07
Identities = 21/96 (21%), Positives = 44/96 (45%), Gaps = 14/96 (14%)
Query: 346 GIRELVLCKDASGLIGLRVC------------AINEGVFVCLVERGSPASLVG-LRFGDQ 392
G+REL + K +G+ + +EG+F+ V A G LR G +
Sbjct: 9 GLRELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLR 68
Query: 393 ILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDR 428
+L +N +++ G + ++L++ + + V++ D
Sbjct: 69 LLEVNQQSLLGLTHGEAVQLLRSVG-DTLTVLVCDG 103
Score = 46.6 bits (111), Expect = 1e-06
Identities = 20/93 (21%), Positives = 35/93 (37%), Gaps = 17/93 (18%)
Query: 429 PLERTVTLHRDSSGHFGFHFNKGQ----------------IVSLVKDSSAARNGLL-VNH 471
P R + + + G G I + +A R+G L V
Sbjct: 8 PGLRELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGL 67
Query: 472 NILEVNGANVVGLKDKELLEAMEKGGSVLTLTL 504
+LEVN +++GL E ++ + G LT+ +
Sbjct: 68 RLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLV 100
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane,
HOST- interaction, structural genomics consortium,
synaptosome, T junction; 1.80A {Homo sapiens}
Length = 123
Score = 49.4 bits (118), Expect = 1e-07
Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 17/91 (18%)
Query: 431 ERTVTLHRDSSGHFGFHFNKGQ----------------IVSLVKDSSAARNGLL-VNHNI 473
R V L R+ S G G+ I +++DS A +NG L I
Sbjct: 25 PRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRI 84
Query: 474 LEVNGANVVGLKDKELLEAMEKGGSVLTLTL 504
+EV+G ++ ++ +EA+ K G+ + +
Sbjct: 85 VEVDGMDLRDASHEQAVEAIRKAGNPVVFMV 115
Score = 45.5 bits (108), Expect = 3e-06
Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 368 NEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIR 426
G+F+ V SPA G L+ GD+I+ ++G + + +Q + ++ A N + +++
Sbjct: 58 MRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAG-NPVVFMVQ 116
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 117
Score = 49.0 bits (117), Expect = 1e-07
Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 12/86 (13%)
Query: 431 ERTVTLHRDSSGHFGF---------HFNKGQI---VSLVKDSSAARNGLLVNHNILEVNG 478
+ TVTL +DS FG HF G+ +S V A L N ++ VNG
Sbjct: 15 QYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPADGLLQENDRVVMVNG 74
Query: 479 ANVVGLKDKELLEAMEKGGSVLTLTL 504
+ + ++ + K G + + +
Sbjct: 75 TPMEDVLHSFAVQQLRKSGKIAAIVV 100
Score = 46.7 bits (111), Expect = 1e-06
Identities = 25/121 (20%), Positives = 46/121 (38%), Gaps = 15/121 (12%)
Query: 332 SSSGSGLKKAYVTNGIRELVLCKDASGLIGLRV---------CAINEGVFVCLVERGSPA 382
SS SG+++ V + L KD+ G+ V + + V G PA
Sbjct: 2 SSGSSGMEE--VIWEQYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPA 59
Query: 383 SLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSS 441
G L+ D+++ +NG + + L+ + +V++ + L SS
Sbjct: 60 D--GLLQENDRVVMVNGTPMEDVLHSFAVQQLRKSG-KIAAIVVKRPRKVQVAPLSGPSS 116
Query: 442 G 442
G
Sbjct: 117 G 117
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric
oxide synthase, oxidoreductase; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 127
Score = 49.1 bits (117), Expect = 2e-07
Identities = 22/99 (22%), Positives = 38/99 (38%), Gaps = 3/99 (3%)
Query: 347 IRELVLCKDASGLIGLRVC--AINEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAG 403
+ + L K G +G V V + + RG A G ++ GD IL++N +
Sbjct: 9 VISVRLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVD 68
Query: 404 YNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSSG 442
+ ++L+ V+I P T L +G
Sbjct: 69 LSYDSALEVLRGIASETHVVLILRGPEGFTTHLETTFTG 107
Score = 48.3 bits (115), Expect = 4e-07
Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 7/85 (8%)
Query: 428 RPLERTVTLHRDSSGHFGFHFNKGQ------IVSLVKDSSAARNGLL-VNHNILEVNGAN 480
P +V L + G GF + I L++ +A ++GL+ IL VN
Sbjct: 6 EPNVISVRLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRP 65
Query: 481 VVGLKDKELLEAMEKGGSVLTLTLI 505
+V L LE + S + LI
Sbjct: 66 LVDLSYDSALEVLRGIASETHVVLI 90
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic
domain associated protein, structural genomics; NMR
{Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 48.5 bits (116), Expect = 2e-07
Identities = 27/94 (28%), Positives = 40/94 (42%), Gaps = 12/94 (12%)
Query: 347 IRELVLCKDASGL----IGLRVCAIN------EGVFVCLVERGSPASLVG-LRFGDQILS 395
LVL +D+ L IG R N EG+FV + PA+ G L+ D+I+
Sbjct: 9 SLTLVLHRDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIE 68
Query: 396 INGETVAGYNMKQVHKILKAAPVNNIRVVIRDRP 429
+NG ++ Q + K A I V + R
Sbjct: 69 VNGRDLSRATHDQAVEAFKTAK-EPIVVQVLRRT 101
Score = 47.4 bits (113), Expect = 4e-07
Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 17/90 (18%)
Query: 431 ERTVTLHRDSSGHFGF-----------HFNKGQ----IVSLVKDSSAARNGLL-VNHNIL 474
T+ LHRDS GF H + +V AA+ G L ++ I+
Sbjct: 9 SLTLVLHRDSGS-LGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRII 67
Query: 475 EVNGANVVGLKDKELLEAMEKGGSVLTLTL 504
EVNG ++ + +EA + + + +
Sbjct: 68 EVNGRDLSRATHDQAVEAFKTAKEPIVVQV 97
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 117
Score = 49.0 bits (117), Expect = 2e-07
Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 17/91 (18%)
Query: 431 ERTVTLHRDSSGHFGFHFNKGQ----------------IVSLVKDSSAARNGLL-VNHNI 473
R V + R+ + G GQ I +++DS A + L I
Sbjct: 16 PRIVEIFREPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKI 75
Query: 474 LEVNGANVVGLKDKELLEAMEKGGSVLTLTL 504
LEV+G ++ E +EA++ G+ + +
Sbjct: 76 LEVSGVDLQNASHSEAVEAIKNAGNPVVFIV 106
Score = 48.2 bits (115), Expect = 3e-07
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 368 NEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIR 426
+G+F+ V SPA L+ GD+IL ++G + + + + +K A N + +++
Sbjct: 49 LKGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASHSEAVEAIKNAG-NPVVFIVQ 107
Query: 427 DRP 429
Sbjct: 108 SLS 110
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 47.8 bits (114), Expect = 3e-07
Identities = 21/84 (25%), Positives = 32/84 (38%), Gaps = 9/84 (10%)
Query: 431 ERTVTLHRDSSGHFGFHFNKGQ--------IVSLVKDSSAARNGLL-VNHNILEVNGANV 481
T+ + S+ G G IV++ + SA G L V H ILEVNG +
Sbjct: 6 SGTLVRVKKSAATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTL 65
Query: 482 VGLKDKELLEAMEKGGSVLTLTLI 505
G + +E + + I
Sbjct: 66 RGKEHREAARIIAEAFKTKDRDYI 89
Score = 45.5 bits (108), Expect = 2e-06
Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 5/88 (5%)
Query: 344 TNGIRELVLCKDASGLIGLRVC----AINEGVFVCLVERGSPASLVG-LRFGDQILSING 398
+ LV K ++ +G+ + + ++RG A G L+ G IL +NG
Sbjct: 3 SGSSGTLVRVKKSAATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNG 62
Query: 399 ETVAGYNMKQVHKILKAAPVNNIRVVIR 426
T+ G ++ +I+ A R I
Sbjct: 63 LTLRGKEHREAARIIAEAFKTKDRDYID 90
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight
junction protein, protein associated to tight junctions,
PATJ, structural genomics; NMR {Homo sapiens}
Length = 128
Score = 48.2 bits (115), Expect = 4e-07
Identities = 24/104 (23%), Positives = 49/104 (47%), Gaps = 9/104 (8%)
Query: 347 IRELVLCKDASG-----LIGLRVCAINE-GVFVCLVERGSPASLVG-LRFGDQILSINGE 399
I + + + ++G ++ LR + + +FV V+ GS A L+ DQIL+IN
Sbjct: 26 IEYIDIERPSTGGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAINHT 85
Query: 400 TVA-GYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSSG 442
+ + +Q +L+ ++R+++ P+ + SSG
Sbjct: 86 PLDQNISHQQAIALLQQTT-GSLRLIVAREPVHTKSSTSGPSSG 128
Score = 40.5 bits (95), Expect = 2e-04
Identities = 17/85 (20%), Positives = 34/85 (40%), Gaps = 12/85 (14%)
Query: 432 RTVTLHRDSSGHFGF------HFNKGQ----IVSLVKDSSAARNG-LLVNHNILEVNGAN 480
+ + R S+G GF N G+ + + S A R+ L N IL +N
Sbjct: 27 EYIDIERPSTGGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAINHTP 86
Query: 481 V-VGLKDKELLEAMEKGGSVLTLTL 504
+ + ++ + +++ L L +
Sbjct: 87 LDQNISHQQAIALLQQTTGSLRLIV 111
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR
{Streptococcus pneumoniae}
Length = 134
Score = 48.0 bits (115), Expect = 5e-07
Identities = 14/73 (19%), Positives = 30/73 (41%), Gaps = 6/73 (8%)
Query: 367 INEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVN-NIRV-V 424
+ GV V V+ PA+ L D I ++ + +A + + L + I++
Sbjct: 55 VTSGVIVRSVQSNMPAN-GHLEKYDVITKVDDKEIA--SSTDLQSALYNHSIGDTIKITY 111
Query: 425 IRD-RPLERTVTL 436
R+ + ++ L
Sbjct: 112 YRNGKEETTSIKL 124
Score = 27.6 bits (62), Expect = 4.9
Identities = 11/63 (17%), Positives = 21/63 (33%)
Query: 443 HFGFHFNKGQIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTL 502
+ + G IV V+ + A L I +V+ + D + G + +
Sbjct: 50 NIPSNVTSGVIVRSVQSNMPANGHLEKYDVITKVDDKEIASSTDLQSALYNHSIGDTIKI 109
Query: 503 TLI 505
T
Sbjct: 110 TYY 112
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell
adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A*
1t2m_A 2ain_A
Length = 106
Score = 46.9 bits (112), Expect = 6e-07
Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 10/90 (11%)
Query: 351 VLCKDASGLIGLRVCA------INEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAG 403
V K +G+ GL + A G++V V +G A + G L GDQ+LS++G ++ G
Sbjct: 15 VTLKKQNGM-GLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVG 73
Query: 404 YNMKQVHKILKAAPVNNIR-VVIRDRPLER 432
+ ++ +++ + + V + + R
Sbjct: 74 LSQERAAELMTRTS-SVVTLEVAKQGAIRR 102
Score = 40.4 bits (95), Expect = 1e-04
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 13/83 (15%)
Query: 433 TVTLHRDSSGHFGFHFNKGQ----------IVSLVKDSSAARNG-LLVNHNILEVNGANV 481
TVTL + + G + + S+VK +A +G L +L V+G ++
Sbjct: 14 TVTLKKQNG--MGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSL 71
Query: 482 VGLKDKELLEAMEKGGSVLTLTL 504
VGL + E M + SV+TL +
Sbjct: 72 VGLSQERAAELMTRTSSVVTLEV 94
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation,
binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4
b.47.1.1
Length = 325
Score = 49.9 bits (120), Expect = 1e-06
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
Query: 355 DASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILK 414
L + GV + V GSPA GLR GD IL+I + V N + V++ ++
Sbjct: 242 AELQLREPSFPDVQHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQ--NAEDVYEAVR 299
Query: 415 AAPVNNIRVVIRDRPLERTVTL 436
+++ L VT
Sbjct: 300 TQSQLAVQIRRGRETLTLYVTP 321
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium; NMR {Geobacillus thermodenitrificans}
Length = 94
Score = 46.1 bits (110), Expect = 1e-06
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 368 NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVN-NIRV-VI 425
+GV+V V PA+ L GD+I +I+G+ + +Q+ ++ +RV I
Sbjct: 4 AKGVYVMSVLPNMPAA-GRLEAGDRIAAIDGQPIN--TSEQIVSYVREKQAGDRVRVTFI 60
Query: 426 RD-RPLERTVTL 436
RD + E + L
Sbjct: 61 RDRKQHEAELVL 72
Score = 28.4 bits (64), Expect = 1.7
Identities = 11/57 (19%), Positives = 20/57 (35%)
Query: 449 NKGQIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLI 505
KG V V + A L I ++G + + ++ G + +T I
Sbjct: 4 AKGVYVMSVLPNMPAAGRLEAGDRIAAIDGQPINTSEQIVSYVREKQAGDRVRVTFI 60
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; 1.70A {Listeria monocytogenes} PDB:
2kjk_A 3i1e_A
Length = 100
Score = 46.2 bits (110), Expect = 1e-06
Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 6/72 (8%)
Query: 368 NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVN-NIRV-VI 425
+GV+V V+ PA+ L GD I I+G + ++ + + V +++
Sbjct: 6 YDGVYVMSVKDDVPAA-DVLHAGDLITEIDGNAFK--SSQEFIDYIHSKKVGDTVKINYK 62
Query: 426 RD-RPLERTVTL 436
+ + + L
Sbjct: 63 HGDKNEQADIKL 74
Score = 29.2 bits (66), Expect = 1.0
Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 4/59 (6%)
Query: 449 NKGQIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAME--KGGSVLTLTLI 505
G V VKD A + L I E++G ++ ++ + K G + +
Sbjct: 6 YDGVYVMSVKDDVPAADVLHAGDLITEIDGNAFKSSQE--FIDYIHSKKVGDTVKINYK 62
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand,
cytoplasm, developmental protein, phosphoprotein, WNT
signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A
3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Length = 108
Score = 46.3 bits (110), Expect = 1e-06
Identities = 12/85 (14%), Positives = 33/85 (38%), Gaps = 6/85 (7%)
Query: 347 IRELVLCKDASGLIGLRVCA-----INEGVFVCLVERGSPASLVG-LRFGDQILSINGET 400
I + L + +G+ + + G+++ + +G + G + GD +L +N
Sbjct: 6 IITVTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMN 65
Query: 401 VAGYNMKQVHKILKAAPVNNIRVVI 425
+ ++L+ +V+
Sbjct: 66 FENMSNDDAVRVLRDIVHKPGPIVL 90
Score = 42.4 bits (100), Expect = 3e-05
Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 15/86 (17%)
Query: 433 TVTLHRDSSGHFGFHFNKGQ---------IVSLVKDSSAARNG-LLVNHNILEVNGANVV 482
TVTL+ + G I S++K + A +G + +L+VN N
Sbjct: 8 TVTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFE 67
Query: 483 GLKDKE----LLEAMEKGGSVLTLTL 504
+ + + L + + K G + LT+
Sbjct: 68 NMSNDDAVRVLRDIVHKPGPI-VLTV 92
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane
protein; 1.65A {Homo sapiens}
Length = 209
Score = 48.2 bits (114), Expect = 1e-06
Identities = 34/169 (20%), Positives = 55/169 (32%), Gaps = 30/169 (17%)
Query: 369 EGVFVCLVERGSPASLVGLR-FGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRD 427
EG V V+ SP GL F D I+SING + N + +LKA ++++I
Sbjct: 16 EGYHVLRVQENSPGHRAGLEPFFDFIVSINGSRLNKDND-TLKDLLKANVEKPVKMLIYS 74
Query: 428 RPLERTVTLH------RDSSGHFGFHF----------NKGQIVSLVKDSSAARNGLLVNH 471
G G N ++ + +S AA GL +
Sbjct: 75 SKTLELRETSVTPSNLWGGQGLLGVSIRFCSFDGANENVWHVLEVESNSPAALAGLRPHS 134
Query: 472 N-ILEVNGANVVGLKDKELLEAME-----------KGGSVLTLTLIPTS 508
+ I+ + L+E E + + + P S
Sbjct: 135 DYIIGADTVMNESEDLFSLIETHEAKPLKLYVYNTDTDNCREVIITPNS 183
Score = 34.3 bits (78), Expect = 0.064
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Query: 366 AINEGVFVCLVERGSPASLVGLR-FGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVV 424
A V VE SPA+L GLR D I+ + ++ + + +A P+ + V
Sbjct: 109 ANENVWHVLEVESNSPAALAGLRPHSDYIIGADTVMNESEDLFSLIETHEAKPL-KLYVY 167
Query: 425 IRDRPLERTVTL 436
D R V +
Sbjct: 168 NTDTDNCREVII 179
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural
genomics, structural genomics consortium, SGC,
metal-binding; 1.75A {Homo sapiens}
Length = 118
Score = 46.2 bits (110), Expect = 2e-06
Identities = 16/93 (17%), Positives = 39/93 (41%), Gaps = 7/93 (7%)
Query: 344 TNGIRELVLCKDASGLIGLRVC------AINEGVFVCLVERGSPASLVG-LRFGDQILSI 396
+ + + + KD +G+ V + ++V VE G S G ++ GD +L++
Sbjct: 22 SMHEKVVNIQKDPGESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNV 81
Query: 397 NGETVAGYNMKQVHKILKAAPVNNIRVVIRDRP 429
+G + + + +LK + + + +
Sbjct: 82 DGVELTEVSRSEAVALLKRTSSSIVLKALEVKE 114
Score = 44.7 bits (106), Expect = 6e-06
Identities = 14/86 (16%), Positives = 33/86 (38%), Gaps = 11/86 (12%)
Query: 431 ERTVTLHRDSSGHFGFHFNKGQ----------IVSLVKDSSAARNGLL-VNHNILEVNGA 479
E+ V + +D G G ++S+ +R+G + +L V+G
Sbjct: 25 EKVVNIQKDPGESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVDGV 84
Query: 480 NVVGLKDKELLEAMEKGGSVLTLTLI 505
+ + E + +++ S + L +
Sbjct: 85 ELTEVSRSEAVALLKRTSSSIVLKAL 110
>3k50_A Putative S41 protease; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative;
2.00A {Bacteroides fragilis nctc 9343}
Length = 403
Score = 49.4 bits (118), Expect = 2e-06
Identities = 14/77 (18%), Positives = 26/77 (33%)
Query: 358 GLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAP 417
L + + V GSPA GL+ G I+ +NG+ + ++ +
Sbjct: 79 TLYKVLDNDTAYNALISYVVPGSPAEEAGLQRGHWIMMMNGDYITKKVESELLQGSTRQL 138
Query: 418 VNNIRVVIRDRPLERTV 434
+ + E T
Sbjct: 139 QIGVYKEVVGEDGEVTG 155
Score = 33.2 bits (76), Expect = 0.19
Identities = 13/57 (22%), Positives = 22/57 (38%)
Query: 450 KGQIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIP 506
I +V S A GL H I+ +NG + + ELL+ + + +
Sbjct: 91 NALISYVVPGSPAEEAGLQRGHWIMMMNGDYITKKVESELLQGSTRQLQIGVYKEVV 147
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB:
3nzi_A 3nwu_A 2ytw_A 2joa_A
Length = 332
Score = 48.8 bits (117), Expect = 2e-06
Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 2/82 (2%)
Query: 355 DASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILK 414
+ G ++ V +PA GL+ D I+SING++V + V ++K
Sbjct: 240 KELKDRHRDFPDVISGAYIIEVIPDTPAEAGGLKENDVIISINGQSVV--SANDVSDVIK 297
Query: 415 AAPVNNIRVVIRDRPLERTVTL 436
N+ V + + TV
Sbjct: 298 RESTLNMVVRRGNEDIMITVIP 319
Score = 28.8 bits (65), Expect = 5.1
Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 453 IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLI 505
I+ ++ D+ A GL N I+ +NG +VV D + + +++ S L + +
Sbjct: 258 IIEVIPDTPAEAGGLKENDVIISINGQSVVSAND--VSDVIKR-ESTLNMVVR 307
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein,
STXBP4 protein, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: b.36.1.1
Length = 109
Score = 45.5 bits (108), Expect = 2e-06
Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 11/93 (11%)
Query: 347 IRELVLCKDASGLIGLRVC-----AINEGVFVCLVERGSPASLVG-LRFGDQILSINGET 400
++ +GL GL++ V++ V G G L+ GDQ++SIN E+
Sbjct: 15 AFRVITVTKETGL-GLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKES 73
Query: 401 VAGYNMKQVHKILKAAPVNN----IRVVIRDRP 429
+ G + ++ I+ A + + IR P
Sbjct: 74 MIGVSFEEAKSIITRAKLRSESPWEIAFIRSGP 106
Score = 36.6 bits (85), Expect = 0.002
Identities = 15/94 (15%), Positives = 31/94 (32%), Gaps = 15/94 (15%)
Query: 426 RDRPLERTVTLHRDSSGHFGFHFNKGQ---------IVSLVKDSSAARNG-LLVNHNILE 475
DR V +G G G I ++ ++G L ++
Sbjct: 10 LDRDPAFRVITVTKETG-LGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVS 68
Query: 476 VNGANVVGLKDKE----LLEAMEKGGSVLTLTLI 505
+N +++G+ +E + A + S + I
Sbjct: 69 INKESMIGVSFEEAKSIITRAKLRSESPWEIAFI 102
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell
membrane, hydrolase, membrane, protease, serine
protease, transmembrane; NMR {Bacillus subtilis}
Length = 91
Score = 44.9 bits (107), Expect = 2e-06
Identities = 13/70 (18%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 370 GVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVN-NIRV-VIRD 427
G++ V PA + GD+I+S +G+ + +++ + + + + + R+
Sbjct: 2 GIYASSVVENMPAK-GKIEVGDKIISADGKNYQ--SAEKLIDYISSKKAGDKVTLKIERE 58
Query: 428 -RPLERTVTL 436
+ T+TL
Sbjct: 59 EKEKRVTLTL 68
Score = 29.2 bits (66), Expect = 0.92
Identities = 12/55 (21%), Positives = 23/55 (41%)
Query: 451 GQIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLI 505
G S V ++ A+ + V I+ +G N + + +K G +TL +
Sbjct: 2 GIYASSVVENMPAKGKIEVGDKIISADGKNYQSAEKLIDYISSKKAGDKVTLKIE 56
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex,
erbin., signaling protein; 1.25A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1mfl_A
Length = 95
Score = 45.1 bits (107), Expect = 2e-06
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 368 NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIR-VVIR 426
++G+FV V+ PAS + L+ GD+I+ NG + Q +LK N + +++R
Sbjct: 34 DDGIFVTRVQPEGPASKL-LQPGDKIIQANGYSFINIEHGQAVSLLKTFQ-NTVELIIVR 91
Query: 427 DRP 429
+
Sbjct: 92 EVS 94
Score = 42.4 bits (100), Expect = 2e-05
Identities = 11/87 (12%), Positives = 30/87 (34%), Gaps = 14/87 (16%)
Query: 432 RTVTLHRDSSGHFGF--------------HFNKGQIVSLVKDSSAARNGLLVNHNILEVN 477
+ + + GF + G V+ V+ A L I++ N
Sbjct: 3 MEIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKLLQPGDKIIQAN 62
Query: 478 GANVVGLKDKELLEAMEKGGSVLTLTL 504
G + + ++ + + ++ + + L +
Sbjct: 63 GYSFINIEHGQAVSLLKTFQNTVELII 89
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 129
Score = 45.9 bits (109), Expect = 2e-06
Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 13/88 (14%)
Query: 432 RTVTLHRDSSGHFGFHFNKGQ------------IVSLVKDSSAARNGLL-VNHNILEVNG 478
V L R G + S++ S+A NG + VN I+ V+G
Sbjct: 17 YNVELVRKDGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDG 76
Query: 479 ANVVGLKDKELLEAMEKGGSVLTLTLIP 506
N+ G + +++E + G V+ LTL+
Sbjct: 77 VNIQGFANHDVVEVLRNAGQVVHLTLVR 104
Score = 41.3 bits (97), Expect = 1e-04
Identities = 16/75 (21%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 368 NEGVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIR 426
G++V V GS A G ++ D+I++++G + G+ V ++L+ A + + +
Sbjct: 45 ASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEVLRNAG-QVVHLTLV 103
Query: 427 DRPLERTVTLHRDSS 441
R + + S
Sbjct: 104 RRKTSSSTSPLEPPS 118
>2o2t_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 2.70A
{Homo sapiens}
Length = 117
Score = 45.4 bits (108), Expect = 3e-06
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 347 IRELVLCKDASGLIGLRVCA------INEGVFVCLVERGSPASLVG-LRFGDQILSINGE 399
+ L K SG +G V G+FV ++ GS A G L+ DQIL+ING+
Sbjct: 21 VEVFELLKPPSGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAINGQ 80
Query: 400 TVA-GYNMKQVHKILKAAPVNNIRVVIRDRPLER 432
+ +Q IL+ A + +++VI L +
Sbjct: 81 ALDQTITHQQAISILQKAK-DTVQLVIARGSLPQ 113
Score = 42.0 bits (99), Expect = 4e-05
Identities = 20/101 (19%), Positives = 41/101 (40%), Gaps = 15/101 (14%)
Query: 419 NNIRVVIRDRPLER---TVTLHRDSSGHFGFH------FNKGQ----IVSLVKDSSAARN 465
+ +I++ R L + SG GF N+G+ + + + S A R+
Sbjct: 6 DEFDQLIKNMAQGRHVEVFELLKPPSGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRD 65
Query: 466 G-LLVNHNILEVNGANV-VGLKDKELLEAMEKGGSVLTLTL 504
G L IL +NG + + ++ + ++K + L +
Sbjct: 66 GRLKETDQILAINGQALDQTITHQQAISILQKAKDTVQLVI 106
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal
peptide complex, high affnity ligand, signaling protein;
NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Length = 103
Score = 44.7 bits (106), Expect = 3e-06
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 368 NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVI-R 426
++G+FV V+ PAS + L+ GD+I+ NG + Q +LK N + ++I R
Sbjct: 42 DDGIFVTRVQPEGPASKL-LQPGDKIIQANGYSFINIEHGQAVSLLKTFQ-NTVELIIVR 99
Query: 427 DRP 429
+
Sbjct: 100 EVS 102
Score = 43.2 bits (102), Expect = 1e-05
Identities = 11/88 (12%), Positives = 32/88 (36%), Gaps = 14/88 (15%)
Query: 431 ERTVTLHRDSSGHFGF--------------HFNKGQIVSLVKDSSAARNGLLVNHNILEV 476
++ + + + GF + G V+ V+ A L I++
Sbjct: 10 KQEIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKLLQPGDKIIQA 69
Query: 477 NGANVVGLKDKELLEAMEKGGSVLTLTL 504
NG + + ++ + + ++ + + L +
Sbjct: 70 NGYSFINIEHGQAVSLLKTFQNTVELII 97
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology,
northeast structural genom consortium, NESG,
peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Length = 597
Score = 48.1 bits (113), Expect = 5e-06
Identities = 17/78 (21%), Positives = 31/78 (39%)
Query: 360 IGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVN 419
G + A +G+ V V A GL GD+I++I+ ++K++ +
Sbjct: 487 FGAKYKASPQGLDVLNVYHDESAYHAGLSAGDKIIAIDHLQATEQSVKRILERYIPGDTV 546
Query: 420 NIRVVIRDRPLERTVTLH 437
I RD + +T
Sbjct: 547 TIHAFRRDELMTLELTWQ 564
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta
protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4
b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A*
1sot_A 1soz_A 1vcw_A 2r3y_A
Length = 318
Score = 46.8 bits (112), Expect = 8e-06
Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
Query: 368 NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVN-NIRV-VI 425
+G+ V V PA+ G++ D I+S++ + + + + I V V+
Sbjct: 243 LQGIVVNEVSPDGPAANAGIQVNDLIISVDNKPAI--SALETMDQVAEIRPGSVIPVVVM 300
Query: 426 RD-RPLERTVTL 436
RD + L VT+
Sbjct: 301 RDDKQLTLQVTI 312
Score = 31.8 bits (73), Expect = 0.46
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 444 FGFHFNKGQIVSLV-KDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTL 502
G +G +V+ V D AA G+ VN I+ V+ + + A + GSV+ +
Sbjct: 238 GGIDQLQGIVVNEVSPDGPAANAGIQVNDLIISVDNKPAISALETMDQVAEIRPGSVIPV 297
Query: 503 TLI 505
++
Sbjct: 298 VVM 300
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus
interaction, metal-binding, nucleus, receptor,
transcription, transcription regulation, zinc-FIN
activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB:
3dzu_A* 3e00_A*
Length = 467
Score = 47.0 bits (111), Expect = 1e-05
Identities = 17/138 (12%), Positives = 32/138 (23%), Gaps = 3/138 (2%)
Query: 51 AYNNPPSPYHSANPPPYYQHPSVPSHPSVPTFPSAP-IYPSAPPQESHSPYYYSDIRANV 109
+++ + P+ +AP ++PS P +S I
Sbjct: 3 HHHHHHVDDDDKMFSTQVNSSL--TSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLS 60
Query: 110 PTGGSPVPSYPQGSYPSNPYQAQNSYPSVPNQPQAPNTYPSMPNQLQAPNGFYPLTSSQQ 169
P + S P P+ S N + + P
Sbjct: 61 SPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNG 120
Query: 170 ASQASLPYPINPLASNKP 187
+ N + K
Sbjct: 121 VLKVPAHPSGNMASFTKH 138
Score = 45.9 bits (108), Expect = 2e-05
Identities = 24/138 (17%), Positives = 39/138 (28%), Gaps = 3/138 (2%)
Query: 66 PYYQHPSVPSHPSVPTFPSAPIYPSAPPQESHSPYYYSDIRANVPTGGSPVPSYPQGSYP 125
++ H V F + P S S + P GSP + S
Sbjct: 2 AHHHHHHVDDDD--KMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTL 59
Query: 126 SNPYQAQNSYPSVPNQPQAPNTYPSMPN-QLQAPNGFYPLTSSQQASQASLPYPINPLAS 184
S+P SV + P P++ L G L+S +S +
Sbjct: 60 SSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLN 119
Query: 185 NKPSAPQPPAYSVQPSHN 202
P P+ ++
Sbjct: 120 GVLKVPAHPSGNMASFTK 137
Score = 43.9 bits (103), Expect = 1e-04
Identities = 22/141 (15%), Positives = 32/141 (22%), Gaps = 8/141 (5%)
Query: 14 HQLTIAQNEYFSKQTTSSSFSSP--PPPVYQTSSHTSPNAYNNPPSPYHSANPPPYYQHP 71
H + ++ +SS +SP + S H S P HS P P
Sbjct: 5 HHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHS--PISTLSSP 62
Query: 72 SVPSHPSVPTFPSAPIYPSAPPQESHSPYYYSDIRANVPTGGSPVPSYPQGSYPSNPYQA 131
P S P P S P SP+ P
Sbjct: 63 INGMGPPFSVISS----PMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGL 118
Query: 132 QNSYPSVPNQPQAPNTYPSMP 152
+ ++
Sbjct: 119 NGVLKVPAHPSGNMASFTKHI 139
Score = 42.0 bits (98), Expect = 4e-04
Identities = 26/133 (19%), Positives = 38/133 (28%), Gaps = 5/133 (3%)
Query: 1 MSSIYPSLEDMTFHQLTIAQNEYFSKQTTSSSFSSPPPPVYQTSSHTSPNAYNNPPSPYH 60
M+ + D + N + T S ++P SP ++P S
Sbjct: 1 MAHHHHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLS 60
Query: 61 S-----ANPPPYYQHPSVPSHPSVPTFPSAPIYPSAPPQESHSPYYYSDIRANVPTGGSP 115
S P P P SVPT P+ +P S S P G +
Sbjct: 61 SPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNG 120
Query: 116 VPSYPQGSYPSNP 128
V P +
Sbjct: 121 VLKVPAHPSGNMA 133
Score = 39.3 bits (91), Expect = 0.003
Identities = 22/148 (14%), Positives = 36/148 (24%), Gaps = 12/148 (8%)
Query: 34 SSPPPPVYQTSSHTSPNAYNNPPSPYHSANPP-PYYQHPSVPSHPSVPTFPSAPIYPSAP 92
+ N+ + HPS+ P +PI +
Sbjct: 2 AHHHHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSS 61
Query: 93 PQESHSPYYYSDIRANVPTGGSPVPSYPQG-SYPSNPYQAQNSYPSVPNQPQAPNTYPSM 151
P P P P P S P+ P ++ + P P +
Sbjct: 62 PINGMGP----------PFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSED 111
Query: 152 PNQLQAPNGFYPLTSSQQASQASLPYPI 179
NG + + + AS I
Sbjct: 112 IKPPLGLNGVLKVPAHPSGNMASFTKHI 139
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.2 bits (111), Expect = 1e-05
Identities = 40/262 (15%), Positives = 71/262 (27%), Gaps = 67/262 (25%)
Query: 283 DNYMGLEVASELINAYARENAANERESDAAGNTVARQAPRDSCTMIAPLSSSGSGLKKAY 342
NY L++ E + T RD L + K
Sbjct: 89 INY------KFLMSPIKTEQ------RQPSMMTRMYIEQRD------RLYNDNQVFAKYN 130
Query: 343 VTNGIRELVLCKDASGLIGLRVCAINEGVFV---------CLVERGSPASLVGLRFGDQI 393
V+ R K L+ LR + V + + + V + +I
Sbjct: 131 VS---RLQPYLKLRQALLELRP---AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI 184
Query: 394 --LSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSSGHFGFHFNKG 451
L++ N +L+ + + I R S+ H +
Sbjct: 185 FWLNLK-------NCNSPETVLE--MLQKLLYQIDPNWTSR---SDHSSNIKLRIHSIQA 232
Query: 452 QIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLT-------- 503
++ L+K N LL +L NV ++ + A +L T
Sbjct: 233 ELRRLLKSKPY-ENCLL----VLL----NV---QNAKAWNAFNLSCKILLTTRFKQVTDF 280
Query: 504 LIPTSMYQHMMKKMSFNLVKDK 525
L + + S L D+
Sbjct: 281 LSAATTTHISLDHHSMTLTPDE 302
Score = 39.8 bits (92), Expect = 0.002
Identities = 55/442 (12%), Positives = 118/442 (26%), Gaps = 116/442 (26%)
Query: 144 APNTYPSMPNQLQAPNGFYPLTSSQQASQASLPYPINPLASN-KPSAPQPPAYSVQPSHN 202
A + S Q + + L S ++ + L P+ +S
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226
Query: 203 T--------------AYPTAPLV------PS----------TIATAPSAPPANIEDATRS 232
Y LV + T + A +
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATT 286
Query: 233 THPTTATAPSVPPAIHDATRSTPSPII---APSVPPTNRDTIRSALVPLYPSLDNYMGLE 289
TH + D +S + +P T P S+
Sbjct: 287 THISLD--HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN-----PRRLSI------- 332
Query: 290 VASELINAYAR----ENAANERESDAAGNTVARQAPRDSCTMIAPLSSSGSGLKKAYV-- 343
+A + + A ++ ++ + +++ P + +K +
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE--------------YRKMFDRL 378
Query: 344 ------TNGIRELVLC-------KDASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFG 390
+ I ++L K ++ +N+ LVE+ S + +
Sbjct: 379 SVFPPSAH-IPTILLSLIWFDVIKSDVMVV------VNKLHKYSLVEKQPKESTISIP-- 429
Query: 391 DQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDS--SGHFGFHF 448
L + + N +H+ + V++ + + + + + D H G H
Sbjct: 430 SIYLELKVKLE---NEYALHRSI----VDHYNI-PKTFDSDDLIPPYLDQYFYSHIGHHL 481
Query: 449 NKGQIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPTS 508
+ + + R + ++ LE K + A GS+L TL
Sbjct: 482 KNIE---HPERMTLFRM-VFLDFRFLEQ--------KIRHDSTAWNASGSILN-TLQQLK 528
Query: 509 MY-QHMMKKMSFN--LVKDKMD 527
Y ++ LV +D
Sbjct: 529 FYKPYICDNDPKYERLVNAILD 550
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti
density, glutametergic receptors, carbohydrate
metabolism, cycle, cell division; HET: MES; 1.85A
{Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Length = 170
Score = 43.8 bits (103), Expect = 3e-05
Identities = 23/118 (19%), Positives = 45/118 (38%), Gaps = 10/118 (8%)
Query: 318 RQAPRDSCTMIAPLSSSGSGLKKAYVTNGIRELVLCKDASGL--------IGLRVCAINE 369
R + + +S+ L+K + + L KD+ GL G +
Sbjct: 52 EDYDRRNEDVDPMAASAEYELEKRVERLELFPVELEKDSEGLGISIIGMGAGADMGLEKL 111
Query: 370 GVFVCLVERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIR 426
G+FV V G A G ++ D ++ ++G ++ G +L+ +R +I
Sbjct: 112 GIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTK-GRVRFMIG 168
Score = 42.6 bits (100), Expect = 6e-05
Identities = 16/86 (18%), Positives = 33/86 (38%), Gaps = 15/86 (17%)
Query: 433 TVTLHRDSSGHFGFHFNKGQ-------------IVSLVKDSSAARNG-LLVNHNILEVNG 478
V L +DS G G + ++ + +A R+G + VN ++EV+G
Sbjct: 83 PVELEKDSEG-LGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDG 141
Query: 479 ANVVGLKDKELLEAMEKGGSVLTLTL 504
++VG+ + + +
Sbjct: 142 TSLVGVTQSFAASVLRNTKGRVRFMI 167
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone,
DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Length = 345
Score = 44.9 bits (107), Expect = 4e-05
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 368 NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPV-NNIRV-VI 425
G FV V GS ++ G++ GD I S+NG+ + + ++ + +++ ++
Sbjct: 262 QRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLN--SFAELRSRIATTEPGTKVKLGLL 319
Query: 426 RD-RPLERTVTL 436
R+ +PLE VTL
Sbjct: 320 RNGKPLEVEVTL 331
Score = 31.1 bits (71), Expect = 0.98
Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 444 FGFHFNKGQIVSLV-KDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTL 502
F +G VS V S +A+ G+ I +NG + + A + G+ + L
Sbjct: 257 FNLDVQRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKL 316
Query: 503 TLI 505
L+
Sbjct: 317 GLL 319
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics,
PDZ domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB:
2koh_A 2k1z_A 2k20_A
Length = 127
Score = 42.1 bits (99), Expect = 5e-05
Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 23/121 (19%)
Query: 332 SSSGSGLKKAYVTNG---------IRELVLCKDASGLIGLRVCA-------INEGVFVCL 375
SS SGLK E+ L S +G+ + + G+F+
Sbjct: 2 SSGSSGLKGEPDCYALSLESSEQLTLEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKS 61
Query: 376 VERGSPASLVG-LRFGDQILSINGETVAGYNMKQVHKILKAA------PVNNIRVVIRDR 428
+ G A G LR DQ++++NGET+ G + + + L+ + I++VI R
Sbjct: 62 IIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVILRR 121
Query: 429 P 429
Sbjct: 122 S 122
Score = 39.0 bits (91), Expect = 6e-04
Identities = 21/103 (20%), Positives = 39/103 (37%), Gaps = 12/103 (11%)
Query: 413 LKAAPVNNIRVVIRDRPLERTVTLHRDSSGHFGF------HFNKGQ-----IVSLVKDSS 461
LK P + L + L+ S G G I S++ +
Sbjct: 8 LKGEPDCYALSLESSEQLTLEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGA 67
Query: 462 AARNG-LLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLT 503
A ++G L +N ++ VNG ++G + E +E + + S+
Sbjct: 68 AFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNI 110
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein,
PDZ domain, hydrolase, inner membrane, membrane,
metal-binding; HET: MLY MSE; 0.98A {Escherichia coli}
PDB: 3id2_A 3id3_A 3id4_A
Length = 91
Score = 40.9 bits (96), Expect = 6e-05
Identities = 14/61 (22%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 376 VERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVT 435
V+ S AS GL+ GD+I+ ++G+ + + +++ P ++ + I + ++T
Sbjct: 11 VQPNSAASXAGLQAGDRIVXVDGQPLTQWV--TFVMLVRDNPGXSLALEIERQGSPLSLT 68
Query: 436 L 436
L
Sbjct: 69 L 69
Score = 30.2 bits (68), Expect = 0.44
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 10/66 (15%)
Query: 453 IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKD----------KELLEAMEKGGSVLTL 502
+ ++ +S+A+ GL I+ V+G + L +E+ GS L+L
Sbjct: 8 LENVQPNSAASXAGLQAGDRIVXVDGQPLTQWVTFVMLVRDNPGXSLALEIERQGSPLSL 67
Query: 503 TLIPTS 508
TLIP S
Sbjct: 68 TLIPES 73
>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease,
serine protease, serine- lysine catalytic DYAD, PDZ
domain, photosynthesis; 1.80A {Scenedesmus obliquus}
SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A
Length = 388
Score = 43.8 bits (104), Expect = 1e-04
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 379 GSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLE----RTV 434
G PA G R GD I++++G V G ++ V +L+ + + VV+ P RT+
Sbjct: 109 GGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLH-APGAPSNTRTL 167
Query: 435 TLHRD 439
L R
Sbjct: 168 QLTRQ 172
Score = 32.6 bits (75), Expect = 0.31
Identities = 10/55 (18%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 453 IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAM--EKGGSVLTLTLI 505
+++ A + G I+ V+G V G+ ++ + + E V + L
Sbjct: 103 VLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQV-EVVLH 156
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell
membrane, membrane, metal-binding, metalloprotease,
transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A
Length = 95
Score = 39.9 bits (93), Expect = 2e-04
Identities = 10/62 (16%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
Query: 376 VERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAA-PVNNIRVVIRDRPLERTV 434
+ S A+ + G ++ +++G ++ ++ + K I V R V
Sbjct: 9 IAANSIAAEAQIAPGTELKAVDGIETPDWDAVRLQLVDKIGDESTTITVAPFGSDQRRDV 68
Query: 435 TL 436
L
Sbjct: 69 KL 70
Score = 28.4 bits (63), Expect = 1.9
Identities = 10/55 (18%), Positives = 19/55 (34%)
Query: 453 IVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLIPT 507
+ + +S AA + + V+G L + G T+T+ P
Sbjct: 6 VGEIAANSIAAEAQIAPGTELKAVDGIETPDWDAVRLQLVDKIGDESTTITVAPF 60
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics,
PSI, protein structure initiative; 2.00A {Mycobacterium
tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Length = 324
Score = 42.7 bits (101), Expect = 2e-04
Identities = 13/84 (15%), Positives = 27/84 (32%), Gaps = 6/84 (7%)
Query: 358 GLIGLRVCAIN--EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKA 415
+G++V G + V G A+ G+ G + ++ + + +
Sbjct: 229 ASLGVQVTNDKDTLGAKIVEVVAGGAAANAGVPKGVVVTKVDDRPINSADALVA-AVRSK 287
Query: 416 APVNNIRV-VIRD--RPLERTVTL 436
AP + + VTL
Sbjct: 288 APGATVALTFQDPSGGSRTVQVTL 311
Score = 28.0 bits (63), Expect = 8.2
Identities = 10/54 (18%), Positives = 21/54 (38%)
Query: 452 QIVSLVKDSSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTLI 505
+IV +V +AA G+ + +V+ + + G+ + LT
Sbjct: 245 KIVEVVAGGAAANAGVPKGVVVTKVDDRPINSADALVAAVRSKAPGATVALTFQ 298
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2
secretion system, protein transport, membrane protein;
1.92A {Vibrio cholerae} SCOP: b.36.1.5
Length = 105
Score = 39.9 bits (93), Expect = 2e-04
Identities = 11/71 (15%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Query: 369 EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKA-APVNNIRV-VIR 426
G V + +GL+ GD +++NG + + ++ + ++ + + + V R
Sbjct: 37 LGYRVSPGKDPVLFESIGLQDGDMAVALNGLDLT--DPNVMNTLFQSMNEMTEMSLTVER 94
Query: 427 D-RPLERTVTL 436
D + + +
Sbjct: 95 DGQQHDVYIQF 105
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2
secretion system, protein transport, membrane protein;
1.63A {Vibrio cholerae} SCOP: b.36.1.5
Length = 87
Score = 38.7 bits (90), Expect = 3e-04
Identities = 11/71 (15%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Query: 369 EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKA-APVNNIRV-VIR 426
G V + +GL+ GD +++NG + + ++ + ++ + + + V R
Sbjct: 19 LGYRVSPGKDPVLFESIGLQDGDMAVALNGLDLT--DPNVMNTLFQSMNEMTEMSLTVER 76
Query: 427 D-RPLERTVTL 436
D + + +
Sbjct: 77 DGQQHDVYIQF 87
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein
structure initiative; NMR
{Methanothermobacterthermautotrophicus} SCOP: b.36.1.6
Length = 125
Score = 39.1 bits (91), Expect = 6e-04
Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 4/75 (5%)
Query: 369 EGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVN-NIRVVIRD 427
+GV + V GSPAS V L G I SING + N+ LK V I +
Sbjct: 25 DGVQIDSVVPGSPASKV-LTPGLVIESINGMPTS--NLTTYSAALKTISVGEVINITTDQ 81
Query: 428 RPLERTVTLHRDSSG 442
+ ++S
Sbjct: 82 GTFHLKTGRNPNNSS 96
Score = 30.6 bits (69), Expect = 0.46
Identities = 19/81 (23%), Positives = 28/81 (34%), Gaps = 8/81 (9%)
Query: 430 LERTVTLHRDSSG----HFGFHFNKGQIVSLVKDSSAARNGLLVNHNILEVNGANVVGLK 485
+ + H SSG +F H G + V S A L I +NG L
Sbjct: 1 MGSSHHHHHHSSGRENLYFQGHQPDGVQIDSVVPGSPASKVLTPGLVIESINGMPTSNLT 60
Query: 486 DKELLEAME--KGGSVLTLTL 504
A++ G V+ +T
Sbjct: 61 T--YSAALKTISVGEVINITT 79
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor,
hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Length = 348
Score = 41.1 bits (97), Expect = 7e-04
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 16/82 (19%)
Query: 369 EGVFVCLVERGSPASLVGLR-----------FGDQILSINGETVAGYNMKQVHKILKAAP 417
GV V PA GL+ GD I S+NG V+ N +++IL
Sbjct: 251 SGVLVLDAPPSGPAGKAGLQSTKRDGYGRLVLGDIITSVNGTKVS--NGSDLYRILDQCK 308
Query: 418 V-NNIRV-VIRD-RPLERTVTL 436
V + + V V+R + +VTL
Sbjct: 309 VGDEVTVEVLRGDHKEKISVTL 330
>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1
protein; PDZ domain, structural genomics consortium,
SGC, hydrolase R; 2.29A {Homo sapiens}
Length = 101
Score = 38.3 bits (88), Expect = 7e-04
Identities = 23/72 (31%), Positives = 34/72 (47%)
Query: 343 VTNGIRELVLCKDASGLIGLRVCAINEGVFVCLVERGSPASLVGLRFGDQILSINGETVA 402
V N + + +L G + N+ V V V+RGS A + GL+ G +I SIN + V
Sbjct: 13 VENILAKRLLILPQEEDYGFDIEEKNKAVVVKSVQRGSLAEVAGLQVGRKIYSINEDLVF 72
Query: 403 GYNMKQVHKILK 414
+V IL
Sbjct: 73 LRPFSEVESILN 84
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Length = 263
Score = 40.1 bits (93), Expect = 0.001
Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 8/96 (8%)
Query: 431 ERTVTLHRDSSGHFGFHFNKGQ-------IVSLVKDSSAARNGLL-VNHNILEVNGANVV 482
R VT+ + +G G G+ I + K +A + L V IL VNG ++
Sbjct: 78 RRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLS 137
Query: 483 GLKDKELLEAMEKGGSVLTLTLIPTSMYQHMMKKMS 518
E ++A++K G + L + K +
Sbjct: 138 SATHDEAVQALKKTGKEVVLEVKYMKEVSPYFKNSA 173
Score = 39.0 bits (90), Expect = 0.002
Identities = 18/93 (19%), Positives = 37/93 (39%), Gaps = 4/93 (4%)
Query: 343 VTNGIRELVLCKDASGLIGLRV---CAINEGVFVCLVERGSPASLVG-LRFGDQILSING 398
+ R + + K +G +G+ + + + + +G A L GD ILS+NG
Sbjct: 74 LLLQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNG 133
Query: 399 ETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLE 431
E ++ + + LK + V + +
Sbjct: 134 EDLSSATHDEAVQALKKTGKEVVLEVKYMKEVS 166
>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane
fusion, viral P glycoprotein B, HSV-1, membrane; HET:
NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A*
3nwd_A*
Length = 703
Score = 40.3 bits (94), Expect = 0.001
Identities = 17/85 (20%), Positives = 23/85 (27%), Gaps = 5/85 (5%)
Query: 206 PTAPLVPSTIATAPSAPPANIEDATR-----STHPTTATAPSVPPAIHDATRSTPSPIIA 260
P AP P T A + AN AT PT P + T P+ A
Sbjct: 2 PAAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNA 61
Query: 261 PSVPPTNRDTIRSALVPLYPSLDNY 285
+ + N+
Sbjct: 62 TVAAGHATLREHLRDIKAENTDANF 86
Score = 38.0 bits (88), Expect = 0.008
Identities = 14/82 (17%), Positives = 22/82 (26%)
Query: 204 AYPTAPLVPSTIATAPSAPPANIEDATRSTHPTTATAPSVPPAIHDATRSTPSPIIAPSV 263
A PT+P P A +A A + P + P P +
Sbjct: 3 AAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNAT 62
Query: 264 PPTNRDTIRSALVPLYPSLDNY 285
T+R L + +
Sbjct: 63 VAAGHATLREHLRDIKAENTDA 84
Score = 34.5 bits (79), Expect = 0.079
Identities = 13/87 (14%), Positives = 26/87 (29%), Gaps = 4/87 (4%)
Query: 34 SSPPPPVYQTSSHTSPNAYNNPPSPYHSANPPPYYQHPSVPSHPSVPTFPSAPIYPSAPP 93
++P P + + A P +P PP P+ P P P P
Sbjct: 3 AAPTSPGTPGVAAATQAANGGPATP----APPALGAAPTGDPKPKKNKKPKNPTPPRPAG 58
Query: 94 QESHSPYYYSDIRANVPTGGSPVPSYP 120
+ ++ +R ++ +
Sbjct: 59 DNATVAAGHATLREHLRDIKAENTDAN 85
Score = 29.9 bits (67), Expect = 2.1
Identities = 14/86 (16%), Positives = 22/86 (25%), Gaps = 4/86 (4%)
Query: 80 PTFPSAPIYPSAPPQESHSPYYYSDIRANVPTGGSPVPSYPQGSYPSNPYQAQNSYPSVP 139
P P++P P + P G+ P+ P P+
Sbjct: 2 PAAPTSPGTPGVAAATQAAN--GGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGD 59
Query: 140 NQPQAPN--TYPSMPNQLQAPNGFYP 163
N A T ++A N
Sbjct: 60 NATVAAGHATLREHLRDIKAENTDAN 85
Score = 29.9 bits (67), Expect = 2.4
Identities = 9/77 (11%), Positives = 21/77 (27%), Gaps = 5/77 (6%)
Query: 25 SKQTTSSSFSSPPPPVYQTSSHTSPNAYNNPPSPYHSANPPPYYQHPSVPSHPSVPTFPS 84
+ Q + ++P PP + T P + P P + +
Sbjct: 16 ATQAANGGPATPAPPALGAAP-TGDPKPKKNKKPKNPTPPRP----AGDNATVAAGHATL 70
Query: 85 APIYPSAPPQESHSPYY 101
+ + + +Y
Sbjct: 71 REHLRDIKAENTDANFY 87
Score = 28.0 bits (62), Expect = 9.6
Identities = 16/94 (17%), Positives = 26/94 (27%), Gaps = 5/94 (5%)
Query: 31 SSFSSPPPPVYQTSSHTSPNAYNNPPSPYHSANPPPYYQHPSVPSHPSVPTFPSAPIYPS 90
+S +P +++ P P P P P PT P +
Sbjct: 6 TSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPK----PKKNKKPKNPTPPRPAGDNA 61
Query: 91 APP-QESHSPYYYSDIRANVPTGGSPVPSYPQGS 123
+ + DI+A V P G+
Sbjct: 62 TVAAGHATLREHLRDIKAENTDANFYVCPPPTGA 95
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 118
Score = 37.9 bits (87), Expect = 0.001
Identities = 23/118 (19%), Positives = 44/118 (37%), Gaps = 9/118 (7%)
Query: 333 SSGSGLKKAYVTNGIRELVLCKDASGLIGLRVCAINEGVFVCLVER--------GSPASL 384
SSGS + + + + + G V + + SP +
Sbjct: 2 SSGSSGVQDQLPYSVTLISMPATTECRRGFSVTVESASSNYATTVQVKEVNRMHISPNNR 61
Query: 385 VGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSSG 442
+ GD+IL ING V +++V +K ++++I P+ + + SSG
Sbjct: 62 NAIHPGDRILEINGTPVRTLRVEEVEDAIKQTS-QTLQLLIEHDPVPQRLDQSGPSSG 118
Score = 28.6 bits (63), Expect = 2.2
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 460 SSAARNGLLVNHNILEVNGANVVGLKDKELLEAMEKGGSVLTLTL 504
S RN + ILE+NG V L+ +E+ +A+++ L L +
Sbjct: 57 SPNNRNAIHPGDRILEINGTPVRTLRVEEVEDAIKQTSQTLQLLI 101
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function;
1.80A {Homo sapiens} PDB: 3ch8_A
Length = 195
Score = 34.9 bits (79), Expect = 0.032
Identities = 19/94 (20%), Positives = 37/94 (39%), Gaps = 1/94 (1%)
Query: 368 NEGVFVCLVERGSPASLVGLRFGDQILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRD 427
++G+FV V+ PAS + L+ GD+I+ NG + Q +LK +++R+
Sbjct: 23 DDGIFVTRVQPEGPASKL-LQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVRE 81
Query: 428 RPLERTVTLHRDSSGHFGFHFNKGQIVSLVKDSS 461
+ G +L ++
Sbjct: 82 VGNGAKQEIRVRVEKDGGSGGVSSVPTNLEVVAA 115
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid
cyclase fold, DDXXXXD motif, NDXXSXXXE MOT
methylisoborneol biosynthesis; HET: GST; 1.80A
{Streptomyces coelicolor} PDB: 3v1x_A*
Length = 433
Score = 35.1 bits (80), Expect = 0.049
Identities = 20/117 (17%), Positives = 31/117 (26%), Gaps = 7/117 (5%)
Query: 137 SVPNQPQAPNTYPSMPNQLQAPNGFYPLTSSQQASQASLPYPINPLASNKPSAPQP---- 192
S + + + + P+ +S + A P P + P P P
Sbjct: 3 SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLA-ALHPPVTVPDPA-PPPPPAPAAGN 60
Query: 193 -PAYSVQPSHNTAYPTAPLVPSTIATAPSAPPANIEDATRSTHPTTATAPSVPPAIH 248
P S P P T + AP+ A +VP H
Sbjct: 61 PPDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYH 117
Score = 32.4 bits (73), Expect = 0.35
Identities = 15/85 (17%), Positives = 24/85 (28%), Gaps = 2/85 (2%)
Query: 182 LASNKPSAPQPPAYSVQPSHNTAYPTAPLVPSTIATAPSAPPANIEDATRSTHPTTATAP 241
+ S+ + SH + ++ A PP + D P A A
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPP--PPPAPAA 58
Query: 242 SVPPAIHDATRSTPSPIIAPSVPPT 266
PP + P+ P T
Sbjct: 59 GNPPDTVTGDSVLQRILRGPTGPGT 83
Score = 31.7 bits (71), Expect = 0.68
Identities = 19/124 (15%), Positives = 29/124 (23%), Gaps = 11/124 (8%)
Query: 165 TSSQQASQASLPYPINPLASNKPSAPQPPAYSVQPSHNTAYPTAPL--VPSTIATAPSAP 222
+S +S P PSA A S + T P P A A P
Sbjct: 3 SSHHHHHHSSGLVPRGS-HMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNP 61
Query: 223 PANIEDATRSTHPTTATAPSVPPAIHDATRSTPSPIIAPSVPPTNRDTIRSALVPLYPSL 282
P T + + ++ +P + P +
Sbjct: 62 PD--------TVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVP 113
Query: 283 DNYM 286
Y
Sbjct: 114 GLYH 117
Score = 31.7 bits (71), Expect = 0.70
Identities = 14/119 (11%), Positives = 24/119 (20%)
Query: 55 PPSPYHSANPPPYYQHPSVPSHPSVPTFPSAPIYPSAPPQESHSPYYYSDIRANVPTGGS 114
P S P S S P + APP +
Sbjct: 13 GLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDSVLQ 72
Query: 115 PVPSYPQGSYPSNPYQAQNSYPSVPNQPQAPNTYPSMPNQLQAPNGFYPLTSSQQASQA 173
+ P G ++ A + A + + P + +
Sbjct: 73 RILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVPEPDPVRVEEV 131
Score = 30.9 bits (69), Expect = 1.0
Identities = 16/118 (13%), Positives = 22/118 (18%), Gaps = 4/118 (3%)
Query: 31 SSFSSPPPPVYQTSSHTSPNAYNNPPSPYHSANPPPYYQHPSVPSHPSVPTFPSAPIYPS 90
SS + + + S + +VP P A P
Sbjct: 3 SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPP 62
Query: 91 APPQESHSPYYYSDIRANVPTGGSPVPSYPQGSYPSNPYQAQNSYPSVPNQPQAPNTY 148
PTG P Y P + P Y
Sbjct: 63 DTVTGDSVL----QRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLY 116
Score = 30.1 bits (67), Expect = 2.0
Identities = 15/104 (14%), Positives = 24/104 (23%)
Query: 25 SKQTTSSSFSSPPPPVYQTSSHTSPNAYNNPPSPYHSANPPPYYQHPSVPSHPSVPTFPS 84
S P TS+ + A +PP PPP + +V
Sbjct: 11 SSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDSV 70
Query: 85 APIYPSAPPQESHSPYYYSDIRANVPTGGSPVPSYPQGSYPSNP 128
P + + P +P + P
Sbjct: 71 LQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPG 114
>4dpv_Z Protein (parvovirus coat protein); complex (virus/DNA), FULL
capsid, single-stranded DNA, icosahedral virus; HET:
DNA; 2.90A {Canine parvovirus} SCOP: b.121.5.2 PDB:
1c8h_A* 1c8d_A 1ijs_P* 1fpv_A 2cas_A 1p5w_A* 1p5y_A
1c8e_A 1c8f_A 1c8g_A
Length = 584
Score = 34.1 bits (77), Expect = 0.13
Identities = 24/219 (10%), Positives = 46/219 (21%), Gaps = 16/219 (7%)
Query: 68 YQHPSVPSHPSVPTFPSAPIYPSAPPQESHSPYYYSDIRANVPTGGSPVPSYPQGSYPSN 127
P P+ T P P+ P + + + + + G+ P +
Sbjct: 181 NTMPFTPAAMRSETLGFYPWKPTIPTPWRYYFQWDRTLIPSHTGTSGTPTNIYHGTDPDD 240
Query: 128 P--YQAQNSYPS--------------VPNQPQAPNTYPSMPNQLQAPNGFYPLTSSQQAS 171
Y +NS P + T+ N+ F + +
Sbjct: 241 VQFYTIENSVPVHLLRTGDEFATGTFFFDCKPCRLTHTWQTNRALGLPPFLNSLPQSEGA 300
Query: 172 QASLPYPINPLASNKPSAPQPPAYSVQPSHNTAYPTAPLVPSTIATAPSAPPANIEDATR 231
+ + Y + + P A + P A
Sbjct: 301 TNFGDIGVQQDKRRGVTQMGNTNYITEATIMRPAEVGYSAPYYSFEASTQGPFKTPIAAG 360
Query: 232 STHPTTATAPSVPPAIHDATRSTPSPIIAPSVPPTNRDT 270
T + A + R T
Sbjct: 361 RGGAQTDENQAADGNPRYAFGRQHGQKTTTTGETPERFT 399
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface
adhesin WALL, peptidoglycan-anchor, cell adhesion; HET:
PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Length = 497
Score = 33.3 bits (74), Expect = 0.20
Identities = 18/163 (11%), Positives = 34/163 (20%), Gaps = 3/163 (1%)
Query: 109 VPTGGSPVPSYPQGSYPSNPYQAQNSYPSVPNQPQAPNTYPSMPNQLQAPNGFYPLTSSQ 168
V GS + Y ++ + + S + APN +Y + +
Sbjct: 331 VKISGSSIGEKNGMIYATDTLNFKQGEGGSRWTMYKNSQAGSGWDSSDAPNSWYGAGAIK 390
Query: 169 QASQAS---LPYPINPLASNKPSAPQPPAYSVQPSHNTAYPTAPLVPSTIATAPSAPPAN 225
+ + + P P + P
Sbjct: 391 MSGPNNYVTVGATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKEK 450
Query: 226 IEDATRSTHPTTATAPSVPPAIHDATRSTPSPIIAPSVPPTNR 268
+ T PT T + P P +
Sbjct: 451 PTPPVKPTAPTKPTYETEKPLKPAPVAPNYEKEPTPPTRLEHH 493
Score = 32.6 bits (72), Expect = 0.33
Identities = 14/82 (17%), Positives = 26/82 (31%), Gaps = 6/82 (7%)
Query: 27 QTTSSSFSSPPPPVYQTSSHTSPNAYNNPPSPYHSANPPPYYQHPSVPSHPSV------P 80
+ P S + A N P PP P+ P++ + P
Sbjct: 416 VVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKEKPTPPVKPTAPTKPTYETEKPLKPAP 475
Query: 81 TFPSAPIYPSAPPQESHSPYYY 102
P+ P+ P + H +++
Sbjct: 476 VAPNYEKEPTPPTRLEHHHHHH 497
>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB:
1dx1_A 1qlx_A 1qlz_A
Length = 219
Score = 32.5 bits (73), Expect = 0.24
Identities = 16/114 (14%), Positives = 26/114 (22%), Gaps = 1/114 (0%)
Query: 35 SPPPPVYQTSSHTSPNAYNNPPSPYHSANPPPYYQHPSVPSHPSVPTFPSAPIYPSAPPQ 94
S P +T + Y SP + PP H P +
Sbjct: 2 SKKRPKPGGGWNTGGSRYPGQGSPGGNRYPPQGGG-GWGQPHGGGWGQPHGGGWGQPHGG 60
Query: 95 ESHSPYYYSDIRANVPTGGSPVPSYPQGSYPSNPYQAQNSYPSVPNQPQAPNTY 148
P+ + + G ++ Q + PS P
Sbjct: 61 GWGQPHGGGWGQPHGGGGWGQGGTHGQWNKPSKPKTNMKHVAGAAAAGAVVGGL 114
Score = 27.9 bits (61), Expect = 8.0
Identities = 15/112 (13%), Positives = 24/112 (21%), Gaps = 2/112 (1%)
Query: 91 APPQESHSPYYYSDIRANVPTGGSPVPSYPQ--GSYPSNPYQAQNSYPSVPNQPQAPNTY 148
+ + + + G YP G P+ P Q
Sbjct: 2 SKKRPKPGGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGG 61
Query: 149 PSMPNQLQAPNGFYPLTSSQQASQASLPYPINPLASNKPSAPQPPAYSVQPS 200
P+ Q + P P + K A A +V
Sbjct: 62 WGQPHGGGWGQPHGGGGWGQGGTHGQWNKPSKPKTNMKHVAGAAAAGAVVGG 113
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 32.6 bits (74), Expect = 0.29
Identities = 19/112 (16%), Positives = 34/112 (30%), Gaps = 1/112 (0%)
Query: 20 QNEYFSKQTTSSSFSSPPPPVYQTSSHTSPNAYNNPPSPYHSANPPPYYQHPSVPSHPSV 79
Q + + + + P ++ ++ A +P P
Sbjct: 338 QFDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPP 397
Query: 80 PTFPSAPIYPSAPPQESHSPYYYSDIRANVPTGGSPVPSYPQGSYPSNPYQA 131
+P P P + + P Y P G+P + PQG + YQA
Sbjct: 398 QGYPPQGYPPQGYPPQGYPPQGYPPPPQGAPPQGAPPAAPPQG-VDNQAYQA 448
Score = 29.9 bits (67), Expect = 2.3
Identities = 15/86 (17%), Positives = 22/86 (25%), Gaps = 5/86 (5%)
Query: 163 PLTSSQQASQASLPYPINPLASNKPSAPQPPAYSVQPSHNTAYPT---APLVPSTIATAP 219
P S A+ ++ + + + Q A P A P P P
Sbjct: 355 PAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAY--PPQGYAPPPQGYPPQGYPPQGYPP 412
Query: 220 SAPPANIEDATRSTHPTTATAPSVPP 245
P P P+ PP
Sbjct: 413 QGYPPQGYPPPPQGAPPQGAPPAAPP 438
Score = 29.5 bits (66), Expect = 2.9
Identities = 17/87 (19%), Positives = 24/87 (27%), Gaps = 2/87 (2%)
Query: 121 QGSYPSNPYQAQNSYPSVPNQPQAPNTYPSMPNQLQAPNGFYPLTSSQQASQASLPYPIN 180
+ PS ++ + Q P G+ P Q P
Sbjct: 360 SDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPPQGYPPQGYPPQGYPPQGYPPQG 419
Query: 181 PLASNKPSAPQ--PPAYSVQPSHNTAY 205
+ + PQ PPA Q N AY
Sbjct: 420 YPPPPQGAPPQGAPPAAPPQGVDNQAY 446
Score = 28.0 bits (62), Expect = 7.9
Identities = 24/131 (18%), Positives = 39/131 (29%), Gaps = 6/131 (4%)
Query: 98 SPYYYSDIRANVPTGGSPVPSYPQGSYPSNPYQAQNSYPSVPNQPQAPNTYPSMPNQLQA 157
P + I P + + + A+ P+ + AP + Q++
Sbjct: 319 HPKFREAISQTFPWVLTCCQFDDKETEDDKD--AETEIPAGESSDAAP---SADAAQMKE 373
Query: 158 PNGFYPLTSSQQASQASLPYPINPLASNKPSAPQPPAYSVQPSHNTAYPTAPLVPSTIAT 217
QQA+ Y P P P Y Q YP P
Sbjct: 374 MMAMMQKMQQQQAAYPPQGYAPPPQGYP-PQGYPPQGYPPQGYPPQGYPPPPQGAPPQGA 432
Query: 218 APSAPPANIED 228
P+APP +++
Sbjct: 433 PPAAPPQGVDN 443
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici
SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens}
PDB: 3cw1_A
Length = 231
Score = 31.5 bits (71), Expect = 0.54
Identities = 15/115 (13%), Positives = 20/115 (17%)
Query: 49 PNAYNNPPSPYHSANPPPYYQHPSVPSHPSVPTFPSAPIYPSAPPQESHSPYYYSDIRAN 108
P P PS A + +
Sbjct: 109 AAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQY 168
Query: 109 VPTGGSPVPSYPQGSYPSNPYQAQNSYPSVPNQPQAPNTYPSMPNQLQAPNGFYP 163
P G P P +G+ P P P + P P
Sbjct: 169 PPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPP 223
>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin,
armadillo repeat, nuclear receptor LIGA binding domain,
protein binding; HET: P6L; 2.76A {Homo sapiens}
Length = 352
Score = 31.9 bits (72), Expect = 0.55
Identities = 25/161 (15%), Positives = 36/161 (22%), Gaps = 4/161 (2%)
Query: 26 KQTTSSSFSSPPPPVYQTSS--HTSPNAYNNPPSPYHSANPPPYYQHPSVPSHPSVPTFP 83
K S P SS +A P H+A PP Y + P T P
Sbjct: 3 KLEAMSQVIQAMPSDLTISSAIQNIHSASKGLP-LNHAALPPTDYDRSPFVTSPISMTMP 61
Query: 84 SAPIYPSAPPQESHSPYYYSDIRANVPTGGSPVPSYPQGSYPSNPYQAQNSYPSVPNQPQ 143
H P P SP S + S P + +
Sbjct: 62 P-HGSLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPASIPHLILELL 120
Query: 144 APNTYPSMPNQLQAPNGFYPLTSSQQASQASLPYPINPLAS 184
+ + + S + +A
Sbjct: 121 KCEPDEPQVQAKIMAYLQQEQANRSKHEKLSTFGLMCKMAD 161
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring
E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A
{Saccharomyces cerevisiae}
Length = 371
Score = 31.4 bits (70), Expect = 0.69
Identities = 12/68 (17%), Positives = 18/68 (26%)
Query: 35 SPPPPVYQTSSHTSPNAYNNPPSPYHSANPPPYYQHPSVPSHPSVPTFPSAPIYPSAPPQ 94
S P T SP P + S S S P+ P S+
Sbjct: 1 SLTPLSAITVRSMEGPPTVQQQSPSVIRQSPTQRRKTSTTSSTSRAPPPTNPDASSSSSS 60
Query: 95 ESHSPYYY 102
+ ++
Sbjct: 61 FAVPTIHF 68
Score = 30.3 bits (67), Expect = 1.8
Identities = 14/104 (13%), Positives = 26/104 (25%), Gaps = 10/104 (9%)
Query: 48 SPNAYNNPPSPYHSANPPPYYQHPSVPSHPSVPTFPSAPIYPSAPPQESHSPYYYSDIRA 107
S + P Q PSV ++ ++ +P S
Sbjct: 1 SLTPLSAITVRSMEGPPTVQQQSPSVIRQSPTQRRKTSTTSSTSRAPPPTNPDASSS--- 57
Query: 108 NVPTGGSPVPSYPQGSYPSNP-YQAQNSYPSVPNQPQAPNTYPS 150
S + P + +P Y+ Q P + +
Sbjct: 58 ------SSSFAVPTIHFKESPFYKIQRLIPELVMNVEVTGGRGM 95
>2wvr_C DNA replication factor CDT1; DNA replication license, DNA
replication inhibitor, phosphoprotein, UBL conjugation,
DNA-binding, polymorphism; HET: DNA; 3.30A {Homo
sapiens} PDB: 2klo_A*
Length = 546
Score = 31.6 bits (70), Expect = 0.75
Identities = 23/175 (13%), Positives = 40/175 (22%), Gaps = 11/175 (6%)
Query: 22 EYFSKQTTSSSFSSPPPPVYQTSSHTSPNAYNNPPSPYHSANPPPYYQHPSVPSHPSVPT 81
++F+++ +PP +T S P A P S + P
Sbjct: 8 DFFARRRPGPPRIAPPKLACRTPSPARP-ALRAPASATSGSRKRARPPAAPGRDQARPPA 66
Query: 82 FPSAPIYPSAPPQESHSPYYYSDIRANVPTGGSPVPSYPQGSYPSNPYQAQNSYPSVPNQ 141
+ S PS Q S P Q + +
Sbjct: 67 RRRLRLSVDEVSSPSTPE----------APDIPACPSPGQKIKKSTPAAGQPPHLTSAQD 116
Query: 142 PQAPNTYPSMPNQLQAPNGFYPLTSSQQASQASLPYPINPLASNKPSAPQPPAYS 196
+ S + + + P +P + PAY
Sbjct: 117 QDTISELASCLQRARELGARVRALKASAQDAGESCTPEAEGRPEEPCGEKAPAYQ 171
>4f6o_A Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 1.68A
{Saccharomyces cerevisiae}
Length = 350
Score = 31.1 bits (69), Expect = 0.78
Identities = 11/60 (18%), Positives = 14/60 (23%), Gaps = 5/60 (8%)
Query: 42 QTSSHTSPNAYNNPPSPYHSANPPPYYQHPSVPSHPSVPTFPSAPIYPSAPPQESHSPYY 101
+ + N YNNP N Y P S P T +
Sbjct: 1 EQAKAQLSNGYNNPN-----VNASNMYGPPQNMSLPPPQTQTIQGTDQPYQYSQCTGRRK 55
>1z14_A VP2; prototype strain, X-RAY crystallography, icosahedral virus;
3.25A {Minute virus of mice} PDB: 1mvm_A* 1z1c_A* 2xgk_A
Length = 549
Score = 31.4 bits (70), Expect = 0.91
Identities = 29/248 (11%), Positives = 57/248 (22%), Gaps = 31/248 (12%)
Query: 68 YQHPSVPSHPSVPTFPSAPIYPSAPPQESHSPYYYSDIRANVPTGGSPVPSYPQGSYP-- 125
P P+ S+ T P P+ + D+ V G+
Sbjct: 146 NILPYTPAANSMETLGFYPWKPTIASPYRYYFCVDRDLSVTYENQEGTVEHNVMGTPKGM 205
Query: 126 ---------SNPYQ-------AQNSYPSVPNQPQAPNTYPSMPNQLQAPNG--FYPLTSS 167
+ P QL P +P +
Sbjct: 206 NSQFFTIENTQQITLLRTGDEFATGTYYFDTNPVKLTHTWQTNRQLGQPPLLSTFPEADT 265
Query: 168 QQASQASLPYPINPLASNKPSAPQPPAYSVQPS------HNTAYPTAPLVPSTIATAPSA 221
+ + + A +P+ + + + P P+
Sbjct: 266 DAGTLTAQGSRHGT--TQMGVNWVSEAIRTRPAQVGFCQPHNDFEASRAGPFAAPKVPAD 323
Query: 222 PPANI-EDATRSTHPTTA--TAPSVPPAIHDATRSTPSPIIAPSVPPTNRDTIRSALVPL 278
+ ++A S + + R T S T I+SA + +
Sbjct: 324 ITQGVDKEANGSVRYSYGKQHGENWASHGPAPERYTWDETSFGSGRDTKDGFIQSAPLVV 383
Query: 279 YPSLDNYM 286
P L+ +
Sbjct: 384 PPPLNGIL 391
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3
(6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...;
bifunctional enzyme, EDTA complex; HET: F6P EDT ADP;
2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B*
3qpu_A* 3qpv_A* 3qpw_A*
Length = 520
Score = 30.8 bits (69), Expect = 1.2
Identities = 15/84 (17%), Positives = 25/84 (29%), Gaps = 5/84 (5%)
Query: 48 SPNAYNNPPSPYHSANPPPYYQHPSVP---SHPSVPTFPSAPIYPSAPPQESHSPYYYSD 104
+P AY + N H P + P A P+ + P S
Sbjct: 421 TPVAYGCRVESIY-LNVESVCTHRERSEDAKKGPNPLMRRNSVTPLASPEPTKKPRINS- 478
Query: 105 IRANVPTGGSPVPSYPQGSYPSNP 128
+V + + +PS P+
Sbjct: 479 FEEHVASTSAALPSCLPPEVPTQL 502
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25,
CFIM68, CPSF5, CPSF6, CPSF, 3' END processing,
processing, cleavage factor; 2.90A {Homo sapiens} PDB:
3q2t_C
Length = 229
Score = 30.5 bits (68), Expect = 1.2
Identities = 11/78 (14%), Positives = 15/78 (19%), Gaps = 1/78 (1%)
Query: 53 NNPPSPYHSANPPPYYQHPSVPSHPSVPTFPSAPIYPSAPPQESHSPYYYSDIRANVPTG 112
S Q A + R P G
Sbjct: 151 FLSQFEMQSRKTTQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPGPAG 210
Query: 113 -GSPVPSYPQGSYPSNPY 129
G P P +P G + +
Sbjct: 211 PGGPPPPFPAGQTHHHHH 228
>3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold,
swapped-dimer, HYDR; HET: BTB; 1.60A {Mycobacterium
tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A
Length = 330
Score = 30.3 bits (68), Expect = 1.4
Identities = 9/60 (15%), Positives = 19/60 (31%)
Query: 210 LVPSTIATAPSAPPANIEDATRSTHPTTATAPSVPPAIHDATRSTPSPIIAPSVPPTNRD 269
+V S I ++ + + P+ D+ P ++ S P + D
Sbjct: 271 VVHSVIPLGGGETVGTFVSPGQARRKIAESGIFIEPSRRDSLFKHPPMVLTSSAPRSPVD 330
>2g6z_A Dual specificity protein phosphatase 5; alpha/beta, hydrolase;
2.70A {Homo sapiens}
Length = 211
Score = 29.7 bits (67), Expect = 1.6
Identities = 12/77 (15%), Positives = 21/77 (27%), Gaps = 3/77 (3%)
Query: 14 HQLTIAQNEYFSKQTTSSSFSSPPPPVYQTSSHTSPNAYNNPPSPYHSANPPPYYQHPSV 73
QL ++E P S + P + P V
Sbjct: 135 GQLLQYESEILPSTPNPQP---PSCQGEAAGSSLIGHLQTLSPDMQGAYCTFPASVLAPV 191
Query: 74 PSHPSVPTFPSAPIYPS 90
P+H +V +P+ +
Sbjct: 192 PTHSTVSELSRSPVATA 208
>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL
biogenesis/degradation, cell cycle, P transferase; HET:
GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A*
2vg4_A
Length = 284
Score = 29.9 bits (68), Expect = 1.8
Identities = 16/60 (26%), Positives = 19/60 (31%), Gaps = 10/60 (16%)
Query: 187 PSAPQPPAYSVQPSHNTAYPTAPLVPSTIATAPSAPPANIEDATR-STHPTTATAPSVPP 245
P P P YPT P + P P A R H + A AP +P
Sbjct: 2 PQLPPAPD---------DYPTFPDTSTWPVVFPELPAAPYGGPCRPPQHTSKAAAPRIPA 52
Score = 27.6 bits (62), Expect = 9.7
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 139 PNQPQAPNTYPSMPNQLQAPNGFYPLTSSQQASQASLPYPINPLASNKPSAPQPPAYSVQ 198
P P AP+ YP+ P+ P F L ++ P ++K +AP+ PA +
Sbjct: 2 PQLPPAPDDYPTFPDTSTWPVVFPELPAAPYGGPCR-----PPQHTSKAAAPRIPADRL- 55
Query: 199 PSH 201
P+H
Sbjct: 56 PNH 58
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos
taurus} SCOP: i.9.1.1
Length = 390
Score = 29.8 bits (66), Expect = 2.1
Identities = 25/199 (12%), Positives = 44/199 (22%), Gaps = 5/199 (2%)
Query: 69 QHPSVPSHPSVPTFPSAPIYPSAPPQESHSPYYYSDIRANVPTGGSPVPSYPQGSYPSNP 128
Q ++ PS + S + A + + +
Sbjct: 190 QVIAINLLPSRDIQYLPILKMSTITGPVPREFKSQLQEAPLEWKALLEMQQTKMVLETFG 249
Query: 129 YQAQNSYPSVPNQPQAPNTYPSMPNQLQAPNGFYPLTSSQQASQASLPYPINPLASNKPS 188
SV P P + P + +S P P +
Sbjct: 250 GDGHARGDSVSQGTGLAPGSPRKPGT-SSIGNVNPGSYGPGSSGTWNPGRPEP----GSA 304
Query: 189 APQPPAYSVQPSHNTAYPTAPLVPSTIATAPSAPPANIEDATRSTHPTTATAPSVPPAIH 248
P S T P P S P P P +A +
Sbjct: 305 GTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNTGSS 364
Query: 249 DATRSTPSPIIAPSVPPTN 267
++ P ++ P++
Sbjct: 365 GSSSFRPDSSGHGNIRPSS 383
Score = 28.3 bits (62), Expect = 6.5
Identities = 17/149 (11%), Positives = 32/149 (21%), Gaps = 10/149 (6%)
Query: 5 YPSLEDMTFHQLTIAQNEYFSKQTTSSSFSSPPPPVYQTSSHTSPNAYNNPPSPYHSANP 64
+ +L +M ++ + S + + N P Y +
Sbjct: 232 WKALLEMQQTKMVLETFGGDGHARGDSVSQGTGLAPGSPRKPGTSSIGNVNPGSYGPGSS 291
Query: 65 PPYYQHPSVPSHPSVPTFPSAPIYPSAPPQESHSPYYYSDIRANVPTGGSPVPSYPQGSY 124
+ P P P SA P + G+ P P+
Sbjct: 292 GTWNPGRPEPGSAG-TWNPGRPEPGSAGTWNPGRPEP--------GSAGTWNPGRPEPGS 342
Query: 125 PSNPYQAQNSYPSVPNQPQAPNTYPSMPN 153
P ++ S
Sbjct: 343 AGTW-NPGRPEPGSAGTWNTGSSGSSSFR 370
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION,
membrane protein; HET: ATP; 2.10A {Rattus norvegicus}
SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Length = 422
Score = 29.8 bits (66), Expect = 2.4
Identities = 15/77 (19%), Positives = 24/77 (31%)
Query: 23 YFSKQTTSSSFSSPPPPVYQTSSHTSPNAYNNPPSPYHSANPPPYYQHPSVPSHPSVPTF 82
Y ++ + S+F + P Y T P + A P S +
Sbjct: 4 YLRRRLSDSNFMANLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVAS 63
Query: 83 PSAPIYPSAPPQESHSP 99
P+AP S+ S
Sbjct: 64 PAAPSPGSSGGGGFFSS 80
Score = 29.0 bits (64), Expect = 4.7
Identities = 15/97 (15%), Positives = 27/97 (27%), Gaps = 9/97 (9%)
Query: 185 NKPSAPQPPAYSVQPSHNTAYPTAPLVPSTIATAPSAPPANIEDATRSTHPTTATAPSVP 244
+P P PP + P A ++ A ++P A + + S+
Sbjct: 27 QRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAA----PSPGSSGGGGFFSSLS 82
Query: 245 PAIHDATRSTPSPII-----APSVPPTNRDTIRSALV 276
A+ T + + R LV
Sbjct: 83 NAVKQTTAAAAATFSEQVGGGSGGAGRGGAAARVLLV 119
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY,
metal transport; 2.20A {Homo sapiens} SCOP: a.39.1.8
PDB: 2jc2_A
Length = 198
Score = 29.0 bits (65), Expect = 2.6
Identities = 8/28 (28%), Positives = 9/28 (32%)
Query: 51 AYNNPPSPYHSANPPPYYQHPSVPSHPS 78
AY P P Y P P+ P
Sbjct: 2 AYPGHPGAGGGYYPGGYGGAPGGPAFPG 29
>1v77_A PH1877P, hypothetical protein PH1877; RNAse P protein, TIM-barrel,
RNA binding protein; 1.80A {Pyrococcus horikoshii} SCOP:
c.6.3.2 PDB: 2czv_A*
Length = 212
Score = 28.8 bits (64), Expect = 3.8
Identities = 13/112 (11%), Positives = 33/112 (29%), Gaps = 18/112 (16%)
Query: 393 ILSINGETVAGYNMKQVHKILKAAPVNNIRVVIRDRPLERTVTLHRDSSGHFGFHFNK-G 451
+ + H + K N+ + RP L +
Sbjct: 99 AIISPWVNRKDPGID--HVLAKLMVKKNVALGFSLRP------LLYSNPYERANLLRFMM 150
Query: 452 QIVSLVKD-------SSAARNGL-LVNHNILEVNGANVVGLKDKELLEAMEK 495
+ LV+ +S+A+ + L ++ V+G++ + ++
Sbjct: 151 KAWKLVEKYKVRRFLTSSAQEKWDVRYPRDL-ISLGVVIGMEIPQAKASISM 201
>2vat_A Acetyl-COA--deacetylcephalosporin C acetyltransferase; A/B-
hydrolase fold, acyltransferase, acetyl coenzyme A,
antibiotic biosynthesis; HET: COA; 2.2A {Acremonium
chrysogenum} SCOP: c.69.1.40 PDB: 2vav_A* 2vax_A*
Length = 444
Score = 28.9 bits (65), Expect = 5.2
Identities = 16/85 (18%), Positives = 29/85 (34%), Gaps = 5/85 (5%)
Query: 181 PLASNKPSAPQPPAYSVQPSHNTAYPTAPLVPSTIATAPSAPPANIEDATRSTHPTTATA 240
P A P P S+ P + A A L P + P + R + + T+
Sbjct: 3 PSAQVARLKPDPFPPSLSPIPHGAVTFAALAP-----CHNLPIFSSRQMLRDSLTYSHTS 57
Query: 241 PSVPPAIHDATRSTPSPIIAPSVPP 265
P++ P I + ++ +
Sbjct: 58 PTMSPQIANRFEASLDAQDIARISL 82
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like
nucleotidyltransferase fold, transferase; HET: DNA;
3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Length = 1220
Score = 28.8 bits (65), Expect = 5.3
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 423 VVIRDRPLERTVTLHRDSSGHFGFHFNKGQI--VSLVK 458
VVI PL V L RD G ++ G + + L+K
Sbjct: 579 VVIAAEPLTDLVPLMRDQEGRPVTQYDMGAVEALGLLK 616
>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex,
inter-protein beta sheet, protein-protein, metal
transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A
{Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A
Length = 229
Score = 28.1 bits (62), Expect = 5.4
Identities = 23/149 (15%), Positives = 42/149 (28%), Gaps = 3/149 (2%)
Query: 144 APNTYPSMPNQLQAPNGFYPLTSSQQASQASLPYPINPLASNKPSAPQPPAYSVQPSHNT 203
++ S+ ++ P P++ + P P+P +
Sbjct: 15 PRGSHMSVHQVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKE 74
Query: 204 AYPTAPLVPSTIATAPSAPPANIEDATRSTHPTTATAPSVPPAIHDATRSTPSPIIAPSV 263
A P E R P + S A ++ + A S
Sbjct: 75 APVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSK 134
Query: 264 PPTNRDTIRSALV---PLYPSLDNYMGLE 289
P T+ + AL P YP+ + +E
Sbjct: 135 PVTSVASGPRALSRNQPQYPARAQALRIE 163
>1k32_A Tricorn protease; protein degradation, substrate gating, serine
protease, beta propeller, proteasome, hydrolase; 2.00A
{Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1
b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Length = 1045
Score = 29.0 bits (64), Expect = 5.5
Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 12/92 (13%)
Query: 355 DASGLIGLRVCAINEGVFVCLVERG--------SPASLVGLRF-GDQILSINGETVAGYN 405
SG I + V G SP G+ G I I+GETV
Sbjct: 734 FRSGRIACDFKLDGDHYVVAKAYAGDYSNEGEKSPIFEYGIDPTGYLIEDIDGETVGA-- 791
Query: 406 MKQVHKILKAAPVNNIRVVIRDRPLE-RTVTL 436
++++L + R+ + + + R + +
Sbjct: 792 GSNIYRVLSEKAGTSARIRLSGKGGDKRDLMI 823
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding,
HOST-virus interaction, metal-binding, nucleus,
receptor, transcription, transcription regulation,
zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo
sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Length = 419
Score = 28.5 bits (63), Expect = 5.7
Identities = 10/63 (15%), Positives = 18/63 (28%), Gaps = 2/63 (3%)
Query: 42 QTSSHTSPNAYNNPPSP--YHSANPPPYYQHPSVPSHPSVPTFPSAPIYPSAPPQESHSP 99
H + S A+PP Y + + + P S + S
Sbjct: 3 HHHHHHVDDDDKMYQSAIKVEPASPPYYSEKTQLYNKPHEEPSNSLMAIECRVCGDKASG 62
Query: 100 YYY 102
++Y
Sbjct: 63 FHY 65
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase,
cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM;
1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A*
3ntb_A* 3q7d_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A*
6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A*
3hs6_A* 3hs7_A* 3krk_A* ...
Length = 587
Score = 28.5 bits (63), Expect = 6.1
Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 3/50 (6%)
Query: 37 PPPVYQTSSHTSPNAYNNPPSPYHSANPPPYY-QHPSVPSHPSVPTFPSA 85
PP + S A++N Y++ PP P+ P +
Sbjct: 96 PPTYNVHYGYKSWEAFSNLS--YYTRALPPVADDCPTPMGVKGNKELPDS 143
>1ciy_A Cryia(A); toxin, ICP; 2.25A {Bacillus thuringiensis} SCOP: b.18.1.3
b.77.2.1 f.1.3.1
Length = 590
Score = 28.6 bits (63), Expect = 6.7
Identities = 9/88 (10%), Positives = 20/88 (22%)
Query: 66 PYYQHPSVPSHPSVPTFPSAPIYPSAPPQESHSPYYYSDIRANVPTGGSPVPSYPQGSYP 125
P + + + P + + I+ + S
Sbjct: 308 PLFGNAGNAAPPVLVSLTGLGIFRTLSSPLYRRIILGSGPNNQELFVLDGTEFSFASLTT 367
Query: 126 SNPYQAQNSYPSVPNQPQAPNTYPSMPN 153
+ P +V + P S+P
Sbjct: 368 NLPSTIYRQRGTVDSLDVIPPQDNSVPP 395
>1mv3_A MYC box dependent interacting protein 1; tumor suppressor,
endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 213
Score = 28.1 bits (61), Expect = 7.0
Identities = 24/162 (14%), Positives = 40/162 (24%), Gaps = 12/162 (7%)
Query: 43 TSSHTSPNAYNNPPSPYHSANPPPYYQHPSVPSHPSVPTFPSAPIYPSAPPQESHSPYYY 102
+ + T N+ P P A P P P PS ++
Sbjct: 3 SPAATPEIRVNHEPEPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQIL--- 59
Query: 103 SDIRANVPTGGSPVPSYPQGSYPSNPYQAQNSYPSVPNQPQAPNTYPSMPNQLQAPNGFY 162
P+ S + A+ S + QP A P +A +
Sbjct: 60 ---------SLFEDTFVPEISVTTPSQPAEASEVAGGTQPAAGAQEPGETAASEAASSSL 110
Query: 163 PLTSSQQASQASLPYPINPLASNKPSAPQPPAYSVQPSHNTA 204
P + + + P + VQ H+
Sbjct: 111 PAVVVETFPATVNGTVEGGSGAGRLDLPPGFMFKVQAQHDYT 152
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA
complex, RNA binding protein/RNA complex; NMR {Homo
sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Length = 229
Score = 28.0 bits (62), Expect = 7.1
Identities = 5/34 (14%), Positives = 12/34 (35%)
Query: 55 PPSPYHSANPPPYYQHPSVPSHPSVPTFPSAPIY 88
+HS+ P H + P + ++ +
Sbjct: 5 HHHHHHSSGLVPRGSHMGRIAIPGLAGAGNSVLL 38
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural
genomics, structur Al genomics consortium, SGC; HET:
ADP; 1.85A {Homo sapiens}
Length = 330
Score = 27.9 bits (63), Expect = 7.6
Identities = 10/42 (23%), Positives = 19/42 (45%)
Query: 420 NIRVVIRDRPLERTVTLHRDSSGHFGFHFNKGQIVSLVKDSS 461
NIRV+ R RP+ + +++ F + I+ L+
Sbjct: 5 NIRVIARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLHKGK 46
>2r58_A Polycomb protein SCM; MBT repeat, sex COMB on midleg, DI-methyl
lysine, regulator, developmental protein, metal-binding,
nucleus; HET: MLY; 2.00A {Drosophila melanogaster} PDB:
2r57_A* 2r5a_A* 2r5m_A*
Length = 265
Score = 28.0 bits (62), Expect = 7.9
Identities = 8/47 (17%), Positives = 12/47 (25%)
Query: 154 QLQAPNGFYPLTSSQQASQASLPYPINPLASNKPSAPQPPAYSVQPS 200
+Q P + SS + P S P P+
Sbjct: 208 PMQPPGHKSRMDSSSSKQRCPRPRYTVVAESEAMVPASPATAHFHPN 254
>1g9l_A Polyadenylate-binding protein 1; all-helical domain, RNA binding
protein; NMR {Homo sapiens} SCOP: a.144.1.1 PDB: 1jgn_A
1jh4_A
Length = 144
Score = 27.1 bits (59), Expect = 8.8
Identities = 16/72 (22%), Positives = 20/72 (27%)
Query: 106 RANVPTGGSPVPSYPQGSYPSNPYQAQNSYPSVPNQPQAPNTYPSMPNQLQAPNGFYPLT 165
A VP Y + NP Q N+ P V Q A + P P
Sbjct: 6 AAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPPQE 65
Query: 166 SSQQASQASLPY 177
Q + P
Sbjct: 66 QKQMLGERLFPL 77
>2ium_A Avian adenovirus CELO long fibre; receptor-binding, trimeric
proteins, viral fibres, beta-sandwich, fiber protein,
viral protein; 1.6A {Avian adenovirus GAL1} PDB: 2iun_A
Length = 248
Score = 27.6 bits (60), Expect = 9.8
Identities = 19/131 (14%), Positives = 34/131 (25%), Gaps = 6/131 (4%)
Query: 24 FSKQTTSSSFSSPPPPVYQTSSHTSPNAYNNPPSPYHSANPPPYYQHPSVPSHPSVPTFP 83
+ S+ S + T+ NP ++ P ++ T+
Sbjct: 113 PMDKDPRSNLSQWLGATVFPAGATTALFSPNPYGSLNTITTLPSIASDWYVPESNLVTYT 172
Query: 84 SAPIYPSAPPQESHSPYYYSDIRANVPTGGSP------VPSYPQGSYPSNPYQAQNSYPS 137
P+ Q + A P + + Q S +N + S
Sbjct: 173 KIHFKPTGSQQLQLASGELVVAAAKSPVQTTKYELIYLGFTLKQNSSGTNFFDPNASSDL 232
Query: 138 VPNQPQAPNTY 148
P P TY
Sbjct: 233 SFLTPPIPFTY 243
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.311 0.128 0.375
Gapped
Lambda K H
0.267 0.0425 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,722,375
Number of extensions: 454911
Number of successful extensions: 1989
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1574
Number of HSP's successfully gapped: 521
Length of query: 530
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 432
Effective length of database: 3,965,535
Effective search space: 1713111120
Effective search space used: 1713111120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 60 (27.7 bits)