RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9258
         (163 letters)



>d1xbra_ b.2.5.4 (A:) T domain from Brachyury transcription factor
           {African clawed frog (Xenopus laevis) [TaxId: 8355]}
          Length = 184

 Score =  153 bits (387), Expect = 1e-48
 Identities = 61/162 (37%), Positives = 86/162 (53%), Gaps = 15/162 (9%)

Query: 1   MIITKTGRRMFPSLQLQVSGLDQAAHYSLLVEFHLASPHKYKY-KTSWEPVGDAERPIAH 59
           MI+TK GRRMFP L++ +SGLD  A Y++L++F  A  H++KY    W P G  E     
Sbjct: 22  MIVTKNGRRMFPVLKVSMSGLDPNAMYTVLLDFVAADNHRWKYVNGEWVPGGKPE---PQ 78

Query: 60  PAARLYSHPAGHALGSFWTGQTLHLNKIKLANAF-VEGTILLNSMHKYIPRIHLIKNSPQ 118
             + +Y HP     G+ W    +  +K+KL N     G I+LNS+HKY PRIH+++    
Sbjct: 79  APSCVYIHPDSPNFGAHWMKDPVSFSKVKLTNKMNGGGQIMLNSLHKYEPRIHIVRVGGT 138

Query: 119 PSTHWETPLSRAIFAFPITEFIAVTAYANQTVKDDACLKKSM 160
                         +FP T+FIAVTAY N+ +     LK   
Sbjct: 139 QRMITS-------HSFPETQFIAVTAYQNEEIT---ALKIKH 170


>d1h6fa_ b.2.5.4 (A:) T-box protein 3, tbx3 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 184

 Score =  150 bits (379), Expect = 2e-47
 Identities = 61/163 (37%), Positives = 86/163 (52%), Gaps = 12/163 (7%)

Query: 1   MIITKTGRRMFPSLQLQVSGLDQAAHYSLLVEFHLASPHKYKY-KTSWEPVGDAERPIAH 59
           M+ITK+GRRMFP  +++ SGLD+ A Y LL++   A   +YK+  + W   G A+     
Sbjct: 22  MVITKSGRRMFPPFKVRCSGLDKKAKYILLMDIIAADDCRYKFHNSRWMVAGKAD---PE 78

Query: 60  PAARLYSHPAGHALGSFWTGQTLHLNKIKLANAFV--EGTILLNSMHKYIPRIHLIKNSP 117
              R+Y HP   A G  W  + +  +K+KL N      G  +LNSMHKY PR H+++ + 
Sbjct: 79  MPKRMYIHPDSPATGEQWMSKVVTFHKLKLTNNISDKHGFTILNSMHKYQPRFHIVRAND 138

Query: 118 QPSTHWETPLSRAIFAFPITEFIAVTAYANQTVKDDACLKKSM 160
                + T      + FP TEFIAVTAY N  +     LK   
Sbjct: 139 ILKLPYST---FRTYLFPETEFIAVTAYQNDKIT---QLKIDN 175


>d1lshb_ f.7.1.1 (B:) Lipovitellin-phosvitin complex; beta-sheet
          shell regions {Lamprey (Ichthyomyzon unicuspis) [TaxId:
          30308]}
          Length = 174

 Score = 27.1 bits (60), Expect = 0.76
 Identities = 13/62 (20%), Positives = 22/62 (35%), Gaps = 9/62 (14%)

Query: 12 PSLQLQVSGLDQAAHYSLLVEFHLASPHKYKYKTSW---------EPVGDAERPIAHPAA 62
          P  ++    L   + + L  +F L++  K K    W                   +HPAA
Sbjct: 35 PKAKIVAVELSDLSVWKLCAKFRLSAHMKAKAAIGWGKNCQQYRAMLEASTGNLQSHPAA 94

Query: 63 RL 64
          R+
Sbjct: 95 RV 96


>d1d2ta_ a.111.1.1 (A:) Bacterial acid phosphatase {Escherichia
           blattae [TaxId: 563]}
          Length = 224

 Score = 24.3 bits (52), Expect = 9.0
 Identities = 7/46 (15%), Positives = 15/46 (32%)

Query: 39  HKYKYKTSWEPVGDAERPIAHPAARLYSHPAGHALGSFWTGQTLHL 84
           +      ++  V           ++  S+P+GH    + T   L  
Sbjct: 112 YMRIRPFAFYGVSTCNTTEQDKLSKNGSYPSGHTSIGWATALVLAE 157


>d1gnta_ e.26.1.1 (A:) Hybrid cluster protein (prismane protein)
           {Desulfovibrio vulgaris [TaxId: 881]}
          Length = 553

 Score = 24.4 bits (53), Expect = 9.0
 Identities = 8/25 (32%), Positives = 12/25 (48%)

Query: 58  AHPAARLYSHPAGHALGSFWTGQTL 82
            +PA + Y H  G+  GS+W     
Sbjct: 274 YYPAFKKYPHFVGNYGGSWWQQNPE 298


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.132    0.407 

Gapped
Lambda     K      H
   0.267   0.0503    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 586,637
Number of extensions: 24178
Number of successful extensions: 47
Number of sequences better than 10.0: 1
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 7
Length of query: 163
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 84
Effective length of database: 1,322,926
Effective search space: 111125784
Effective search space used: 111125784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.2 bits)