BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9259
(489 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9YGN6|SMUG1_XENLA Single-strand selective monofunctional uracil DNA glycosylase
OS=Xenopus laevis GN=smug1 PE=1 SV=1
Length = 281
Score = 232 bits (591), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 117/243 (48%), Positives = 159/243 (65%), Gaps = 6/243 (2%)
Query: 50 STIDDERQNSENDIAEGVLNIEKQLIHELTNSNITYEFPVEYVYNPLDYAFELHSKYVYK 109
S I D ++E+ A+ L +E +L L SN+ ++ PV+YVYNPL YA+ H YV
Sbjct: 26 SDIPDITSSTESP-ADSFLKVELEL--NLKLSNLVFQDPVQYVYNPLVYAWAPHENYVQT 82
Query: 110 YCNSKKKILFLGMNPGPWGMVQCGIPFGEVKAVKGFLNIEGKVNQPEKFHKDRPIKGLDC 169
YC SKK++LFLGMNPGP+GM Q G+PFGEV V+ +L IEG V++PE H R I+G +C
Sbjct: 83 YCKSKKEVLFLGMNPGPFGMAQTGVPFGEVNHVRDWLQIEGPVSKPEVEHPKRRIRGFEC 142
Query: 170 PRSEISGKRLWELASQLSDGKAADFFKHAYVHNYFPLAFVSKTATNITPAELKNKTTIEK 229
P+SE+SG R W L L G+ FFKH +VHN+ PL F++ + N+TP +L K +
Sbjct: 143 PQSEVSGARFWSLFKSLC-GQPETFFKHCFVHNHCPLIFMNHSGKNLTPTDLP-KAQRDT 200
Query: 230 LNSICDKSLSDIVKHLGIETVIAIGKFAETRAEKALKSNRIFTVKVTSISHPSPRNPASN 289
L ICD++L V+ LG++ VI +G+F+E RA KAL + I V V I HPSPRNP +N
Sbjct: 201 LLEICDEALCQAVRVLGVKLVIGVGRFSEQRARKALMAEGI-DVTVKGIMHPSPRNPQAN 259
Query: 290 KNW 292
K W
Sbjct: 260 KGW 262
>sp|Q811Q1|SMUG1_RAT Single-strand selective monofunctional uracil-DNA glycosylase
OS=Rattus norvegicus GN=Smug1 PE=2 SV=1
Length = 278
Score = 222 bits (566), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 107/232 (46%), Positives = 147/232 (63%), Gaps = 5/232 (2%)
Query: 61 NDIAEGVLNIEKQLIHELTNSNITYEFPVEYVYNPLDYAFELHSKYVYKYCNSKKKILFL 120
+AEG L E +L EL S + + PV +YNP+DYA+E H YV +YC K++LFL
Sbjct: 25 RSLAEGFLEEELRLNAEL--SQLQFPEPVGVIYNPVDYAWEPHRNYVTRYCQGPKEVLFL 82
Query: 121 GMNPGPWGMVQCGIPFGEVKAVKGFLNIEGKVNQPEKFHKDRPIKGLDCPRSEISGKRLW 180
GMNPGP+GM Q G+PFGEV V+ +L I G V P + H RP+ GL+CP+SE+SG R W
Sbjct: 83 GMNPGPFGMAQTGVPFGEVNVVRDWLGIGGSVLSPPQEHPKRPVLGLECPQSEVSGARFW 142
Query: 181 ELASQLSDGKAADFFKHAYVHNYFPLAFVSKTATNITPAELKNKTTIEKLNSICDKSLSD 240
L G+ FF+H +VHN PL F++ + N+TPA+L K E+L SICD +L
Sbjct: 143 GFFRTLC-GQPQVFFRHCFVHNLCPLLFLAPSGRNLTPADLPAKHR-EQLLSICDAALCR 200
Query: 241 IVKHLGIETVIAIGKFAETRAEKALKSNRIFTVKVTSISHPSPRNPASNKNW 292
V+ LG+ V+ +G+ AE RA +AL + V+V + HPSPR+P +NK W
Sbjct: 201 QVQLLGVRLVVGVGRLAEQRARRAL-AGLTPEVQVEGLLHPSPRSPQANKGW 251
>sp|Q53HV7|SMUG1_HUMAN Single-strand selective monofunctional uracil DNA glycosylase
OS=Homo sapiens GN=SMUG1 PE=1 SV=2
Length = 270
Score = 221 bits (562), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 108/238 (45%), Positives = 147/238 (61%), Gaps = 5/238 (2%)
Query: 55 ERQNSENDIAEGVLNIEKQLIHELTNSNITYEFPVEYVYNPLDYAFELHSKYVYKYCNSK 114
E Q +AE L E +L EL S + + PV +YNP++YA+E H YV +YC
Sbjct: 19 EPQPCPGSLAESFLEEELRLNAEL--SQLQFSEPVGIIYNPVEYAWEPHRNYVTRYCQGP 76
Query: 115 KKILFLGMNPGPWGMVQCGIPFGEVKAVKGFLNIEGKVNQPEKFHKDRPIKGLDCPRSEI 174
K++LFLGMNPGP+GM Q G+PFGEV V+ +L I G V P + H RP+ GL+CP+SE+
Sbjct: 77 KEVLFLGMNPGPFGMAQTGVPFGEVSMVRDWLGIVGPVLTPPQEHPKRPVLGLECPQSEV 136
Query: 175 SGKRLWELASQLSDGKAADFFKHAYVHNYFPLAFVSKTATNITPAELKNKTTIEKLNSIC 234
SG R W L G+ FF H +VHN PL F++ + N+TPAEL K E+L IC
Sbjct: 137 SGARFWGFFRNLC-GQPEVFFHHCFVHNLCPLLFLAPSGRNLTPAELPAKQR-EQLLGIC 194
Query: 235 DKSLSDIVKHLGIETVIAIGKFAETRAEKALKSNRIFTVKVTSISHPSPRNPASNKNW 292
D +L V+ LG+ V+ +G+ AE RA +AL + + V+V + HPSPRNP +NK W
Sbjct: 195 DAALCRQVQLLGVRLVVGVGRLAEQRARRAL-AGLMPEVQVEGLLHPSPRNPQANKGW 251
>sp|Q6P5C5|SMUG1_MOUSE Single-strand selective monofunctional uracil DNA glycosylase
OS=Mus musculus GN=Smug1 PE=2 SV=1
Length = 279
Score = 220 bits (561), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 106/232 (45%), Positives = 146/232 (62%), Gaps = 5/232 (2%)
Query: 61 NDIAEGVLNIEKQLIHELTNSNITYEFPVEYVYNPLDYAFELHSKYVYKYCNSKKKILFL 120
+AEG L E +L EL S + + PV +YNP+DYA+E H YV +YC K++LFL
Sbjct: 27 RSLAEGFLEEELRLNAEL--SQLQFPEPVGVIYNPVDYAWEPHRNYVTRYCQGPKEVLFL 84
Query: 121 GMNPGPWGMVQCGIPFGEVKAVKGFLNIEGKVNQPEKFHKDRPIKGLDCPRSEISGKRLW 180
GMNPGP+GM Q G+PFGEV V+ +L + G V P + H RP+ GL+CP+SE+SG R W
Sbjct: 85 GMNPGPFGMAQTGVPFGEVNVVRDWLGVGGPVLTPPQEHPKRPVLGLECPQSEVSGARFW 144
Query: 181 ELASQLSDGKAADFFKHAYVHNYFPLAFVSKTATNITPAELKNKTTIEKLNSICDKSLSD 240
L G+ FF+H +VHN PL F++ + N+TPAEL K E+L SICD +L
Sbjct: 145 GFFRTLC-GQPQVFFRHCFVHNLCPLLFLAPSGRNLTPAELPAKQR-EQLLSICDAALCR 202
Query: 241 IVKHLGIETVIAIGKFAETRAEKALKSNRIFTVKVTSISHPSPRNPASNKNW 292
V+ LG+ V+ +G+ AE RA +AL + V+V + HPSPR+ +NK W
Sbjct: 203 QVQLLGVRLVVGVGRLAEQRARRAL-AGLTPEVQVEGLLHPSPRSAQANKGW 253
>sp|Q59I47|SMUG1_BOVIN Single-strand selective monofunctional uracil DNA glycosylase
OS=Bos taurus GN=SMUG1 PE=2 SV=1
Length = 272
Score = 202 bits (514), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 107/238 (44%), Positives = 147/238 (61%), Gaps = 5/238 (2%)
Query: 55 ERQNSENDIAEGVLNIEKQLIHELTNSNITYEFPVEYVYNPLDYAFELHSKYVYKYCNSK 114
E Q S +AEG L E +L EL + + V VYNP++YA+E H YV +YC
Sbjct: 21 EPQPSPRSLAEGFLQEELRLNDEL--RQLQFSELVGIVYNPVEYAWEPHRSYVTRYCQGP 78
Query: 115 KKILFLGMNPGPWGMVQCGIPFGEVKAVKGFLNIEGKVNQPEKFHKDRPIKGLDCPRSEI 174
K++LFLGMNPGP+GM Q G+PFGEV V+ +L + G V P + H RP+ GL+CP+SE+
Sbjct: 79 KQVLFLGMNPGPFGMAQTGVPFGEVSVVRDWLGLGGPVRTPPQEHPKRPVLGLECPQSEV 138
Query: 175 SGKRLWELASQLSDGKAADFFKHAYVHNYFPLAFVSKTATNITPAELKNKTTIEKLNSIC 234
SG R W L G+ FF+H +VHN PL ++ + NITPAEL K E+L +C
Sbjct: 139 SGARFWGFFRNLC-GQPEVFFRHCFVHNLCPLLLLAPSGRNITPAELPAKQR-EQLLGVC 196
Query: 235 DKSLSDIVKHLGIETVIAIGKFAETRAEKALKSNRIFTVKVTSISHPSPRNPASNKNW 292
D +L V+ LG+ V+ +G+ AE RA +AL S + V+V + HPSPR+P +NK W
Sbjct: 197 DAALCRQVQLLGVRLVVGVGRVAEQRARRALAS-LMPEVQVEGLLHPSPRSPQANKGW 253
>sp|Q0P4H0|ADAT2_XENTR tRNA-specific adenosine deaminase 2 OS=Xenopus tropicalis GN=adat2
PE=2 SV=1
Length = 170
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 53/102 (51%), Gaps = 20/102 (19%)
Query: 332 DERSKTRGMNEVNATKNATRHAEMVCIDHIVRQYPSTYRRVFESITVIVNVEPCIMCMAA 391
D + +G NEVN TKNATRHAEMV ID ++ ++ +
Sbjct: 34 DNQVVGKGRNEVNETKNATRHAEMVAIDQVLDWCEKNSKKSRD----------------- 76
Query: 392 LLRVFESITVIVNVEPCIMCMAALLSLNIRTIVFACSNDRFG 433
VFE+I + V VEPCIMC AL L I +V+ C N+RFG
Sbjct: 77 ---VFENIVLYVTVEPCIMCAGALRLLKIPLVVYGCRNERFG 115
>sp|Q4V7V8|ADAT2_XENLA tRNA-specific adenosine deaminase 2 OS=Xenopus laevis GN=adat2 PE=2
SV=1
Length = 175
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 55/108 (50%), Gaps = 25/108 (23%)
Query: 338 RGMNEVNATKNATRHAEMVCIDHIVRQYPSTYRRVFESITVIVNVEPCIMCMAALLRVFE 397
+G NEVN TKNAT+HAEMV ID ++ + C M VFE
Sbjct: 45 KGRNEVNETKNATQHAEMVAIDQVL--------------------DWCEMNSKKSTDVFE 84
Query: 398 SITVIVNVEPCIMCMAALLSLNIRTIVFACSNDRFG-----YNVLGSD 440
+I + V VEPCIMC AL L I +V+ C N+RFG NV G D
Sbjct: 85 NIVLYVTVEPCIMCAGALRLLKIPLVVYGCRNERFGGCGSVLNVSGDD 132
>sp|O94642|TAD2_SCHPO tRNA-specific adenosine deaminase subunit tad2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=tad2 PE=3 SV=2
Length = 389
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 49/96 (51%), Gaps = 26/96 (27%)
Query: 338 RGMNEVNATKNATRHAEMVCIDHIVRQYPSTYRRVFESITVIVNVEPCIMCMAALLRVFE 397
RG NE N + + RHAE++ I+ I+ YP++ VF+
Sbjct: 252 RGFNETNCSLSGIRHAELIAIEKILEHYPAS--------------------------VFK 285
Query: 398 SITVIVNVEPCIMCMAALLSLNIRTIVFACSNDRFG 433
T+ V VEPC+MC AAL L+I+ + F C NDRFG
Sbjct: 286 ETTLYVTVEPCLMCAAALKQLHIKAVYFGCGNDRFG 321
>sp|Q6P6J0|ADAT2_MOUSE tRNA-specific adenosine deaminase 2 OS=Mus musculus GN=Adat2 PE=2
SV=1
Length = 191
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 51/102 (50%), Gaps = 32/102 (31%)
Query: 338 RGMNEVNATKNATRHAEMVCIDHIV------RQYPSTYRRVFESITVIVNVEPCIMCMAA 391
+G NEVN TKNATRHAEMV ID ++ Q PST
Sbjct: 57 KGRNEVNQTKNATRHAEMVAIDQVLDWCHQHGQSPST----------------------- 93
Query: 392 LLRVFESITVIVNVEPCIMCMAALLSLNIRTIVFACSNDRFG 433
VFE + V VEPCIMC AAL + I +V+ C N+RFG
Sbjct: 94 ---VFEHTVLYVTVEPCIMCAAALRLMKIPLVVYGCQNERFG 132
>sp|Q7Z6V5|ADAT2_HUMAN tRNA-specific adenosine deaminase 2 OS=Homo sapiens GN=ADAT2 PE=1
SV=1
Length = 191
Score = 73.2 bits (178), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 50/96 (52%), Gaps = 20/96 (20%)
Query: 338 RGMNEVNATKNATRHAEMVCIDHIVRQYPSTYRRVFESITVIVNVEPCIMCMAALLRVFE 397
+G NEVN TKNATRHAEMV ID ++ + + E VFE
Sbjct: 57 KGRNEVNQTKNATRHAEMVAIDQVLDWCRQSGKSPSE--------------------VFE 96
Query: 398 SITVIVNVEPCIMCMAALLSLNIRTIVFACSNDRFG 433
+ V VEPCIMC AAL + I +V+ C N+RFG
Sbjct: 97 HTVLYVTVEPCIMCAAALRLMKIPLVVYGCQNERFG 132
>sp|Q5E9J7|ADAT2_BOVIN tRNA-specific adenosine deaminase 2 OS=Bos taurus GN=DEADC1 PE=2
SV=1
Length = 191
Score = 73.2 bits (178), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 50/96 (52%), Gaps = 20/96 (20%)
Query: 338 RGMNEVNATKNATRHAEMVCIDHIVRQYPSTYRRVFESITVIVNVEPCIMCMAALLRVFE 397
+G NEVN TKNATRHAEMV ID + RR S + VFE
Sbjct: 57 KGRNEVNQTKNATRHAEMVAIDQAL----DWCRRRGRSPS----------------EVFE 96
Query: 398 SITVIVNVEPCIMCMAALLSLNIRTIVFACSNDRFG 433
+ V VEPCIMC AAL + I +V+ C N+RFG
Sbjct: 97 HTVLYVTVEPCIMCAAALRLMRIPLVVYGCQNERFG 132
>sp|Q5RIV4|ADAT2_DANRE tRNA-specific adenosine deaminase 2 OS=Danio rerio GN=adat2 PE=2
SV=2
Length = 214
Score = 69.3 bits (168), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 49/96 (51%), Gaps = 20/96 (20%)
Query: 338 RGMNEVNATKNATRHAEMVCIDHIVRQYPSTYRRVFESITVIVNVEPCIMCMAALLRVFE 397
+G NEVN TKNATRHAEMV +D ++ + C + V E
Sbjct: 56 KGRNEVNETKNATRHAEMVALDQVL--------------------DWCRLREKDCKEVCE 95
Query: 398 SITVIVNVEPCIMCMAALLSLNIRTIVFACSNDRFG 433
+ V VEPCIMC AAL L I +V+ C N+RFG
Sbjct: 96 QTVLYVTVEPCIMCAAALRLLRIPFVVYGCKNERFG 131
>sp|P47058|TAD2_YEAST tRNA-specific adenosine deaminase subunit TAD2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TAD2 PE=1
SV=1
Length = 250
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 47/97 (48%), Gaps = 22/97 (22%)
Query: 339 GMNEVNATKNATRHAEMVCIDHIVRQYPSTYRRVFESITVIVNVEPCIMCMAALLRVFES 398
GMN+ N + HAE + ID I ++ ++ VF+
Sbjct: 41 GMNDTNKSLTGVAHAEFMGIDQI----------------------KAMLGSRGVVDVFKD 78
Query: 399 ITVIVNVEPCIMCMAALLSLNIRTIVFACSNDRFGYN 435
IT+ V VEPCIMC +AL L+I +VF C N+RFG N
Sbjct: 79 ITLYVTVEPCIMCASALKQLDIGKVVFGCGNERFGGN 115
>sp|Q9S7I0|TADA_ARATH tRNA-specific adenosine deaminase, chloroplastic OS=Arabidopsis
thaliana GN=TADA PE=1 SV=1
Length = 1307
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 338 RGMNEVNATKNATRHAEMVCIDHIVRQYPSTYRRVFESITVIVNVEPCIMCMAALLRV 395
RG N V +++T HAEM+CI + S +R T+ V +EPC MC A+L+
Sbjct: 1145 RGYNLVEELRDSTAHAEMICIREGSKALRS-WR--LADTTLYVTLEPCPMCAGAILQA 1199
>sp|C1D1Q9|TILS_DEIDV tRNA(Ile)-lysidine synthase OS=Deinococcus deserti (strain VCD115 /
DSM 17065 / LMG 22923) GN=tilS PE=3 SV=1
Length = 533
Score = 41.2 bits (95), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 35/95 (36%), Gaps = 26/95 (27%)
Query: 339 GMNEVNATKNATRHAEMVCIDHIVRQYPSTYRRVFESITVIVNVEPCIMCMAALLRVFES 398
G N A + TRHAE+ + + + Y
Sbjct: 416 GRNTSRADSDMTRHAELAALRAATAELGTAY--------------------------LTG 449
Query: 399 ITVIVNVEPCIMCMAALLSLNIRTIVFACSNDRFG 433
T++V +EPC MC+ A L + IV+ SN + G
Sbjct: 450 CTLVVTLEPCPMCLGAALEARVERIVYGASNPKAG 484
>sp|O67050|TADA_AQUAE tRNA-specific adenosine deaminase OS=Aquifex aeolicus (strain VF5)
GN=tadA PE=1 SV=1
Length = 151
Score = 41.2 bits (95), Expect = 0.021, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 337 TRGMNEVNATKNATRHAEMVCIDHIVRQYPSTYRRVFESITVIVNVEPCIMCMAALL 393
++ N V K+ T HAEM+ I R+ + Y E + V +EPCIMC AL+
Sbjct: 37 SKAHNSVEELKDPTAHAEMLAIKEACRRLNTKY---LEGCELYVTLEPCIMCSYALV 90
>sp|P0DA21|TADA_STRPQ tRNA-specific adenosine deaminase OS=Streptococcus pyogenes
serotype M3 (strain SSI-1) GN=tadA PE=3 SV=1
Length = 171
Score = 40.8 bits (94), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 6/51 (11%)
Query: 400 TVIVNVEPCIMCMAALLSLNIRTIVFACSNDRFG-----YNVLGSDEKTNY 445
T+ V +EPC+MC A+ I +++ SN +FG Y +L +DE+ N+
Sbjct: 79 TLFVTIEPCVMCSGAIGLARIPHVIYGASNQKFGGADSLYQIL-TDERLNH 128
>sp|Q5XE14|TADA_STRP6 tRNA-specific adenosine deaminase OS=Streptococcus pyogenes
serotype M6 (strain ATCC BAA-946 / MGAS10394) GN=tadA
PE=1 SV=2
Length = 171
Score = 40.8 bits (94), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 6/51 (11%)
Query: 400 TVIVNVEPCIMCMAALLSLNIRTIVFACSNDRFG-----YNVLGSDEKTNY 445
T+ V +EPC+MC A+ I +++ SN +FG Y +L +DE+ N+
Sbjct: 79 TLFVTIEPCVMCSGAIGLARIPHVIYGASNQKFGGADSLYQIL-TDERLNH 128
>sp|P0DA20|TADA_STRP3 tRNA-specific adenosine deaminase OS=Streptococcus pyogenes
serotype M3 (strain ATCC BAA-595 / MGAS315) GN=tadA PE=3
SV=1
Length = 171
Score = 40.8 bits (94), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 6/51 (11%)
Query: 400 TVIVNVEPCIMCMAALLSLNIRTIVFACSNDRFG-----YNVLGSDEKTNY 445
T+ V +EPC+MC A+ I +++ SN +FG Y +L +DE+ N+
Sbjct: 79 TLFVTIEPCVMCSGAIGLARIPHVIYGASNQKFGGADSLYQIL-TDERLNH 128
>sp|P68999|TADA_STRP1 tRNA-specific adenosine deaminase OS=Streptococcus pyogenes
serotype M1 GN=tadA PE=3 SV=1
Length = 171
Score = 40.4 bits (93), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 6/51 (11%)
Query: 400 TVIVNVEPCIMCMAALLSLNIRTIVFACSNDRFG-----YNVLGSDEKTNY 445
T+ V +EPC+MC A+ I +++ SN +FG Y +L +DE+ N+
Sbjct: 79 TLFVTIEPCVMCSGAIGLARIPHVIYGASNQKFGGVDSLYQIL-TDERLNH 128
>sp|Q8P2R7|Y196_STRP8 Uncharacterized deaminase spyM18_0196 OS=Streptococcus pyogenes
serotype M18 (strain MGAS8232) GN=spyM18_0196 PE=3 SV=1
Length = 159
Score = 39.7 bits (91), Expect = 0.054, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 48/118 (40%), Gaps = 32/118 (27%)
Query: 338 RGMNEVNATKNATRHAEMVCIDHIVRQYPSTYRRVFESITVIVNVEPCIMCMAALLRVFE 397
RG N + A HAEM+ I+ + +R +
Sbjct: 43 RGHNAREESNQAIMHAEMMAINE-ANAHEGNWRLL------------------------- 76
Query: 398 SITVIVNVEPCIMCMAALLSLNIRTIVFACSNDRFG-----YNVLGSDEKTNYIEIVE 450
T+ V +EPC+MC A+ I +++ SN +FG Y +L +DE+ N+ VE
Sbjct: 77 DTTLFVTIEPCVMCSGAIGLARIPHVIYGASNQKFGGADSLYQIL-TDERLNHRVQVE 133
>sp|Q9RV23|TILS_DEIRA tRNA(Ile)-lysidine synthase OS=Deinococcus radiodurans (strain ATCC
13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 /
NCIMB 9279 / R1 / VKM B-1422) GN=tilS PE=3 SV=2
Length = 582
Score = 37.0 bits (84), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 400 TVIVNVEPCIMCMAALLSLNIRTIVFACSNDRFG 433
T++V +EPC MC+ A L I IV+ +N + G
Sbjct: 476 TLVVTLEPCPMCLGAALEARIGHIVYGAANPKAG 509
>sp|P21335|TADA_BACSU tRNA-specific adenosine deaminase OS=Bacillus subtilis (strain 168)
GN=tadA PE=1 SV=1
Length = 161
Score = 35.8 bits (81), Expect = 0.86, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Query: 338 RGMNEVNATKNATRHAEMVCIDHIVRQYPSTYRRVFESITVIVNVEPCIMCMAALLRVFE 397
R N + + HAEM+ ID + T+R E T+ V +EPC MC A++
Sbjct: 39 RAHNLRETEQRSIAHAEMLVIDEACKAL-GTWR--LEGATLYVTLEPCPMCAGAVVLSRV 95
Query: 398 SITVIVNVEPCIMCMAALLSL 418
V +P C L++L
Sbjct: 96 EKVVFGAFDPKGGCSGTLMNL 116
>sp|P57343|Y255_BUCAI Uncharacterized protein BU255 OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=BU255 PE=3 SV=1
Length = 161
Score = 35.4 bits (80), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 400 TVIVNVEPCIMCMAALLSLNIRTIVFAC----SNDRFGYNVLGSDEKTNY 445
T+ V ++PCIMC A++ I+ +VF S+ RF L D + +Y
Sbjct: 77 TLYVTLQPCIMCCGAIIQSRIKRLVFGANCNSSDHRFSLKNLFCDPQKDY 126
>sp|O59834|FCYS_SCHPO Probable cytosine deaminase OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPCC965.14c PE=3 SV=1
Length = 162
Score = 35.4 bits (80), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 394 RVFESITVIVNVEPCIMCMAALLSLNIRTIVFACSNDRF 432
R E T+ + EPC MC A+ IR ++F SN+
Sbjct: 73 RDLEKCTLYTSTEPCAMCSGAIFWSGIRRMIFGLSNENL 111
>sp|P44931|TADA_HAEIN tRNA-specific adenosine deaminase OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=tadA PE=3 SV=1
Length = 173
Score = 35.4 bits (80), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 400 TVIVNVEPCIMCMAALLSLNIRTIVFACSNDRFG 433
T+ V +EPC MC A+L I+ +VF S+ + G
Sbjct: 83 TLYVTLEPCTMCAGAILHSRIKRLVFGASDYKTG 116
>sp|Q7CQ08|TADA_SALTY tRNA-specific adenosine deaminase OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=tadA PE=3 SV=2
Length = 172
Score = 35.0 bits (79), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 400 TVIVNVEPCIMCMAALLSLNIRTIVFACSNDRFG-----YNVLGSDEKTNYIEIVENT 452
T+ V +EPC+MC A++ I +VF + + G +VL + +EI+E
Sbjct: 79 TLYVTLEPCVMCAGAMVHSRIGRVVFGARDAKTGAAGSLIDVLHHPGMNHRVEIIEGV 136
>sp|Q8XGY4|TADA_SALTI tRNA-specific adenosine deaminase OS=Salmonella typhi GN=tadA PE=3
SV=2
Length = 172
Score = 35.0 bits (79), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 400 TVIVNVEPCIMCMAALLSLNIRTIVFACSNDRFG-----YNVLGSDEKTNYIEIVENT 452
T+ V +EPC+MC A++ I +VF + + G +VL + +EI+E
Sbjct: 79 TLYVTLEPCVMCAGAMVHSRIGRVVFGARDAKTGAAGSLIDVLHHPGMNHRVEIIEGV 136
>sp|Q04448|MTDC_DROME Bifunctional methylenetetrahydrofolate
dehydrogenase/cyclohydrolase, mitochondrial
OS=Drosophila melanogaster GN=Nmdmc PE=2 SV=2
Length = 309
Score = 34.3 bits (77), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 38/94 (40%), Gaps = 2/94 (2%)
Query: 256 FAETRAEKALKSNRIFTVKVTSISHPSPRNPASNKNWVENTTKKLKDLGVLHYFTSESQN 315
E A + +N++ + IS + R PAS E + + DL T
Sbjct: 46 VGEDPASEKYVANKMVACREVGISSETKRLPASTTQ--EELLQLIADLNKDPQVTGILVQ 103
Query: 316 IPNHEHCNHRTLGFTVDERSKTRGMNEVNATKNA 349
+P EH N RT+ VD G NEVN + A
Sbjct: 104 LPVPEHINERTICNAVDVDKDVDGFNEVNIGRTA 137
>sp|Q9P7N4|TAD3_SCHPO tRNA-specific adenosine deaminase subunit tad3
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=tad3 PE=3 SV=1
Length = 315
Score = 33.5 bits (75), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 16/76 (21%)
Query: 326 TLGFTVDERSKTRG------MNEVN--ATKNATRHAEMVCIDHIVRQYPSTYRRVFESIT 377
L +VDERSK + MN +N A + +R R S R + + +T
Sbjct: 194 VLAVSVDERSKLKNPINHCVMNAINLVAKRELSRRQN--------RTDGSKDRYLCKDLT 245
Query: 378 VIVNVEPCIMCMAALL 393
V++ EPC+MC LL
Sbjct: 246 VVMTHEPCVMCSMGLL 261
>sp|A7EAA1|MTAP_SCLS1 S-methyl-5'-thioadenosine phosphorylase OS=Sclerotinia sclerotiorum
(strain ATCC 18683 / 1980 / Ss-1) GN=SS1G_02233 PE=3
SV=1
Length = 306
Score = 33.1 bits (74), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 14/68 (20%)
Query: 197 HAYVHNYFPLAFVSKTATN--ITPAELKNKTTIEKLNSICDKSLSDIVKHLGIETVIAIG 254
H HN P+AF+S+ T+ + P E+ N+ I L S +G+ T+IA
Sbjct: 49 HILSHNNTPIAFLSRHGTHHELAPHEIPNRANIAALRS------------MGVRTIIAFS 96
Query: 255 KFAETRAE 262
R E
Sbjct: 97 AVGSLREE 104
>sp|Q8K9R4|Y246_BUCAP Uncharacterized protein BUsg_246 OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=BUsg_246 PE=3 SV=1
Length = 151
Score = 32.7 bits (73), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 26/90 (28%)
Query: 339 GMNEVNATKNATRHAEMVCIDHIVRQYPSTYRRVFESITVIVNVEPCIMCMAALLRVFES 398
G N V + ++T HAE++ + R + YR V +
Sbjct: 42 GWNSVISQNDSTAHAEIIALREAGRNIKN-YRLV-------------------------N 75
Query: 399 ITVIVNVEPCIMCMAALLSLNIRTIVFACS 428
T+ V ++PC+MC A+++ I+ +VF S
Sbjct: 76 TTLYVTLQPCMMCCGAIINSRIKRLVFGAS 105
>sp|Q1RGK7|Y1426_RICBR Uncharacterized deaminase RBE_1426 OS=Rickettsia bellii (strain
RML369-C) GN=RBE_1426 PE=3 SV=2
Length = 145
Score = 32.3 bits (72), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 337 TRGMNEVNATKNATRHAEMVCIDHIVRQYPSTYRRVFESITVIVNVEPCIMCMAAL 392
++ N NA HAE++ I+ R S + + V +EPC MC AA+
Sbjct: 33 SKSYNNTEEKNNALYHAEIIAINEACRIISS---KNLSDYDIYVTLEPCAMCAAAI 85
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 178,272,882
Number of Sequences: 539616
Number of extensions: 7407934
Number of successful extensions: 20222
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 20142
Number of HSP's gapped (non-prelim): 59
length of query: 489
length of database: 191,569,459
effective HSP length: 122
effective length of query: 367
effective length of database: 125,736,307
effective search space: 46145224669
effective search space used: 46145224669
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)