Query psy9259
Match_columns 489
No_of_seqs 400 out of 2048
Neff 5.5
Searched_HMMs 46136
Date Fri Aug 16 22:52:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9259.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9259hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0590 CumB Cytosine/adenosin 100.0 1.9E-30 4.1E-35 239.7 14.1 115 326-471 29-151 (152)
2 PRK10860 tRNA-specific adenosi 100.0 5.3E-30 1.1E-34 241.1 14.9 122 325-477 33-161 (172)
3 PRK10786 ribD bifunctional dia 99.9 1.3E-23 2.9E-28 218.8 14.8 121 322-486 22-155 (367)
4 PLN02807 diaminohydroxyphospho 99.9 2.8E-23 6.1E-28 217.0 15.0 118 325-486 54-184 (380)
5 TIGR00326 eubact_ribD riboflav 99.9 1.8E-23 3.8E-28 215.8 12.9 119 324-486 18-149 (344)
6 cd01285 nucleoside_deaminase N 99.9 7.3E-23 1.6E-27 178.6 10.2 84 325-434 17-103 (109)
7 PHA02588 cd deoxycytidylate de 99.9 7.9E-22 1.7E-26 185.2 13.1 107 322-466 19-162 (168)
8 KOG1018|consensus 99.9 7.3E-22 1.6E-26 185.3 12.7 125 325-480 32-169 (169)
9 TIGR02571 ComEB ComE operon pr 99.9 1.3E-21 2.9E-26 180.7 11.9 98 321-450 21-137 (151)
10 COG0117 RibD Pyrimidine deamin 99.9 1.7E-21 3.6E-26 176.9 11.6 127 292-473 6-145 (146)
11 cd01286 deoxycytidylate_deamin 99.8 1.2E-20 2.7E-25 170.2 11.4 83 322-432 17-122 (131)
12 cd01284 Riboflavin_deaminase-r 99.8 4.7E-20 1E-24 163.2 9.7 75 325-433 19-102 (115)
13 PF00383 dCMP_cyt_deam_1: Cyti 99.8 2.2E-19 4.8E-24 153.3 10.2 77 324-427 23-102 (102)
14 cd00786 cytidine_deaminase-lik 99.8 3E-19 6.5E-24 152.6 9.0 75 324-427 17-95 (96)
15 COG2131 ComEB Deoxycytidylate 99.7 1.9E-16 4.1E-21 147.3 10.8 101 291-432 7-131 (164)
16 COG1573 Uracil-DNA glycosylase 99.5 1E-13 2.2E-18 133.8 7.5 125 111-285 37-177 (202)
17 KOG2771|consensus 99.4 4.4E-13 9.6E-18 136.3 6.6 126 325-452 185-332 (344)
18 cd01283 cytidine_deaminase Cyt 99.4 1.8E-12 3.9E-17 113.4 9.3 78 325-431 18-103 (112)
19 PF03167 UDG: Uracil DNA glyco 99.3 1.6E-12 3.5E-17 116.1 7.0 141 110-303 3-151 (152)
20 KOG3127|consensus 99.1 3E-10 6.5E-15 109.8 7.6 97 291-430 65-184 (230)
21 TIGR00758 UDG_fam4 uracil-DNA 99.0 8.4E-10 1.8E-14 104.1 8.6 132 110-295 17-164 (173)
22 PF14439 Bd3614-deam: Bd3614-l 98.5 4.2E-07 9E-12 80.4 8.0 98 327-431 11-117 (136)
23 PRK14719 bifunctional RNAse/5- 98.5 3E-07 6.5E-12 96.4 7.3 84 396-486 43-148 (360)
24 TIGR01354 cyt_deam_tetra cytid 98.2 1E-05 2.3E-10 72.9 9.0 67 325-419 21-94 (127)
25 PRK10201 G/U mismatch-specific 97.3 0.00091 2E-08 63.4 8.3 136 110-298 5-155 (168)
26 TIGR00584 mug mismatch-specifi 96.8 0.0078 1.7E-07 62.1 9.7 137 107-285 123-275 (328)
27 PRK12411 cytidine deaminase; P 95.5 0.14 3E-06 46.8 10.3 39 325-364 24-65 (132)
28 PRK06848 hypothetical protein; 95.3 0.1 2.2E-06 48.1 8.7 39 325-364 27-68 (139)
29 PRK05578 cytidine deaminase; V 95.0 0.23 5.1E-06 45.3 10.2 39 325-364 24-65 (131)
30 PF14437 MafB19-deam: MafB19-l 95.0 0.2 4.4E-06 46.6 9.8 54 349-429 79-136 (146)
31 COG0295 Cdd Cytidine deaminase 94.4 0.22 4.9E-06 45.7 8.4 75 325-427 26-108 (134)
32 TIGR01355 cyt_deam_dimer cytid 94.3 0.31 6.8E-06 50.0 10.2 65 325-419 43-112 (283)
33 PRK08298 cytidine deaminase; V 93.8 0.18 3.8E-06 46.4 6.5 38 326-364 24-64 (136)
34 PLN02402 cytidine deaminase 93.2 0.27 5.9E-06 50.8 7.5 65 325-419 46-115 (303)
35 TIGR00628 ung uracil-DNA glyco 92.2 2.2 4.8E-05 42.1 12.1 82 216-303 123-210 (212)
36 PLN02182 cytidine deaminase 91.6 1.4 2.9E-05 46.4 10.2 68 325-420 66-144 (339)
37 PRK09027 cytidine deaminase; P 91.3 0.72 1.6E-05 47.6 7.9 65 325-419 71-140 (295)
38 PF07799 DUF1643: Protein of u 91.3 0.23 5E-06 44.9 3.9 90 112-258 10-99 (136)
39 KOG0833|consensus 90.1 3.4 7.4E-05 39.5 10.6 72 325-425 42-122 (173)
40 PRK05254 uracil-DNA glycosylas 88.7 7.6 0.00016 38.7 12.4 161 101-305 46-217 (224)
41 PF14424 Toxin-deaminase: The 82.2 2 4.3E-05 39.4 4.4 48 349-419 72-119 (133)
42 PF14431 YwqJ-deaminase: YwqJ- 81.6 1.7 3.7E-05 39.2 3.7 17 404-420 109-125 (125)
43 PHA03200 uracil DNA glycosylas 80.1 15 0.00032 37.4 10.0 86 216-305 154-245 (255)
44 PRK09027 cytidine deaminase; P 80.0 5.9 0.00013 41.1 7.4 73 325-423 210-289 (295)
45 PHA03199 uracil DNA glycosylas 73.4 28 0.0006 36.3 10.1 85 216-305 210-297 (304)
46 PHA03347 uracil DNA glycosylas 70.8 1.1E+02 0.0023 31.3 13.4 87 215-305 147-244 (252)
47 PHA03204 uracil DNA glycosylas 70.6 26 0.00057 36.8 9.3 84 216-305 224-313 (322)
48 COG3663 Mug G:T/U mismatch-spe 69.4 4.7 0.0001 38.5 3.3 30 110-140 5-34 (169)
49 TIGR01355 cyt_deam_dimer cytid 68.3 28 0.00061 35.9 8.8 39 325-364 195-236 (283)
50 PHA03202 uracil DNA glycosylas 62.1 19 0.00042 37.6 6.3 83 215-305 217-305 (313)
51 PF08210 APOBEC_N: APOBEC-like 56.8 12 0.00026 36.1 3.6 117 332-484 35-174 (188)
52 PHA03201 uracil DNA glycosylas 55.6 33 0.00071 36.0 6.7 85 216-305 224-311 (318)
53 PF03096 Ndr: Ndr family; Int 55.6 32 0.00069 35.6 6.6 63 236-302 87-149 (283)
54 KOG2931|consensus 53.2 52 0.0011 34.5 7.6 63 236-302 110-172 (326)
55 PF14440 XOO_2897-deam: Xantho 53.0 8.4 0.00018 34.8 1.7 55 348-429 43-101 (118)
56 PRK12311 rpsB 30S ribosomal pr 37.1 95 0.0021 32.8 6.8 39 88-126 31-71 (326)
57 PLN02402 cytidine deaminase 32.4 1.1E+02 0.0023 32.2 6.1 39 325-364 213-254 (303)
58 COG0692 Ung Uracil DNA glycosy 32.4 72 0.0016 31.9 4.7 69 230-304 140-214 (223)
59 COG0106 HisA Phosphoribosylfor 31.0 48 0.001 33.5 3.3 62 105-187 88-157 (241)
60 PF06925 MGDG_synth: Monogalac 28.9 3.1E+02 0.0068 25.2 8.3 79 227-305 70-157 (169)
61 PF14441 OTT_1508_deam: OTT_15 26.5 1.2E+02 0.0026 27.6 4.8 45 346-419 63-107 (142)
62 KOG1596|consensus 25.9 55 0.0012 33.6 2.7 73 90-187 131-205 (317)
63 COG2350 Uncharacterized protei 25.9 95 0.0021 26.8 3.8 37 93-130 11-50 (92)
64 KOG0664|consensus 25.7 69 0.0015 33.5 3.4 76 120-201 16-115 (449)
65 KOG2994|consensus 24.2 1.7E+02 0.0037 30.1 5.7 55 245-305 230-289 (297)
66 PRK05299 rpsB 30S ribosomal pr 21.5 3E+02 0.0066 27.9 7.1 39 88-126 36-76 (258)
67 KOG0879|consensus 21.5 65 0.0014 30.1 2.1 40 383-429 106-145 (177)
68 PF00875 DNA_photolyase: DNA p 21.0 3.6E+02 0.0079 24.5 7.0 72 227-305 47-118 (165)
No 1
>COG0590 CumB Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.9e-30 Score=239.71 Aligned_cols=115 Identities=23% Similarity=0.414 Sum_probs=103.0
Q ss_pred eEEEEE---CCcEEEEeeCCCCCCCCCchHHHHHHHHHHHHHCCCcccccccceeeeeccchhhhhhhhhhhcccCcEEE
Q psy9259 326 TLGFTV---DERSKTRGMNEVNATKNATRHAEMVCIDHIVRQYPSTYRRVFESITVIVNVEPCIMCMAALLRVFESITVI 402 (489)
Q Consensus 326 ~VGaVi---dG~IIa~G~N~~~~~~dpt~HAE~~AI~~a~~~l~~~~r~~~~s~~l~~~~ep~~l~~~~~~~~l~g~tLY 402 (489)
|||||+ +|+||+.|+|++.+.+||++|||+.||++|++.++. |+ +++||||
T Consensus 29 PvGaviV~~~~~ii~~~~N~~~~~~dptaHAEi~air~a~~~~~~-~~-------------------------l~~~tly 82 (152)
T COG0590 29 PVGAVIVDADGEIIARGHNRREEDNDPTAHAEILAIRAAAETLGN-YR-------------------------LKDCTLY 82 (152)
T ss_pred CEEEEEEcCCCCEEEEecCccccCCCccccHHHHHHHHHHHhhCC-CC-------------------------cCCcEEE
Confidence 358764 789999999999999999999999999999998764 54 8899999
Q ss_pred EecCCChhhHHHHHHcCCCEEEEEeeCCcccc-----cccCCcccCCCeEEEecCCCCCCcHHHHHHHHHHhhh
Q psy9259 403 VNVEPCIMCMAALLSLNIRTIVFACSNDRFGY-----NVLGSDEKTNYIEIVENTDDNTPKDDAVIQNIKVNSA 471 (489)
Q Consensus 403 vTlEPC~MCa~AIi~sgIkrVVyg~~d~~~Gg-----~il~~~~~~~~ieV~~gv~~~~~~~ee~~~Ll~~F~~ 471 (489)
||+|||+||++||+||||+|||||++++++|+ +++.....+|.++|..|+ +++||..+++.||.
T Consensus 83 vT~EPC~MCagAi~~ari~rvvyga~~~~~ga~g~~~~i~~~~~~~~~~~v~~g~-----~~~e~~~~l~~f~~ 151 (152)
T COG0590 83 VTLEPCPMCAGAIIWARIDRVVYGASDPKTGAIGSLLDILKDPRLNHRVEVYGGI-----LEEECSALLSEFFR 151 (152)
T ss_pred EecCCHHHHHHHHHHhCCCeEEEecCCCCcCccCcccccccCCCCCcCeEEecch-----hhHHHHHHHHHHHh
Confidence 99999999999999999999999999999984 345555667899999988 79999999999996
No 2
>PRK10860 tRNA-specific adenosine deaminase; Provisional
Probab=99.97 E-value=5.3e-30 Score=241.15 Aligned_cols=122 Identities=22% Similarity=0.352 Sum_probs=105.1
Q ss_pred CeEEEEE--CCcEEEEeeCCCCCCCCCchHHHHHHHHHHHHHCCCcccccccceeeeeccchhhhhhhhhhhcccCcEEE
Q psy9259 325 RTLGFTV--DERSKTRGMNEVNATKNATRHAEMVCIDHIVRQYPSTYRRVFESITVIVNVEPCIMCMAALLRVFESITVI 402 (489)
Q Consensus 325 ~~VGaVi--dG~IIa~G~N~~~~~~dpt~HAE~~AI~~a~~~l~~~~r~~~~s~~l~~~~ep~~l~~~~~~~~l~g~tLY 402 (489)
.|||||+ +|+||++|||++...+|++.||||+||++|.++++. + .+.+||||
T Consensus 33 ~pvGAVIV~~g~IIa~g~N~~~~~~d~~~HAEi~Ai~~a~~~~~~-~-------------------------~l~g~tlY 86 (172)
T PRK10860 33 VPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVLQN-Y-------------------------RLLDATLY 86 (172)
T ss_pred CCEEEEEEeCCEEEEEeeCCCCCCCCCccCHHHHHHHHHHHhcCC-C-------------------------CcCCcEEE
Confidence 4578875 899999999999888999999999999999987653 2 27899999
Q ss_pred EecCCChhhHHHHHHcCCCEEEEEeeCCcccc-----cccCCcccCCCeEEEecCCCCCCcHHHHHHHHHHhhhhcCCCC
Q psy9259 403 VNVEPCIMCMAALLSLNIRTIVFACSNDRFGY-----NVLGSDEKTNYIEIVENTDDNTPKDDAVIQNIKVNSAITNPNT 477 (489)
Q Consensus 403 vTlEPC~MCa~AIi~sgIkrVVyg~~d~~~Gg-----~il~~~~~~~~ieV~~gv~~~~~~~ee~~~Ll~~F~~~~np~~ 477 (489)
||+|||+||++||+|+||++||||+.+++.|+ +++.....+|.++|..|+ +++||.+||+.||++.|+..
T Consensus 87 ~TlEPC~MC~~aii~agI~rVvyg~~d~~~g~~g~~~~~l~~~~~~~~i~v~~gv-----~~~e~~~ll~~ff~~~~~~~ 161 (172)
T PRK10860 87 VTLEPCVMCAGAMVHSRIGRLVFGARDAKTGAAGSLMDVLHHPGMNHRVEITEGV-----LADECAALLSDFFRMRRQEI 161 (172)
T ss_pred eeCCCcHHHHHHHHHhCCCEEEEeecCCCCCCCCcHHHHhhcccCCCCCEEEeCc-----cHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999764 234444446779999888 79999999999999877644
No 3
>PRK10786 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=99.90 E-value=1.3e-23 Score=218.82 Aligned_cols=121 Identities=17% Similarity=0.170 Sum_probs=105.2
Q ss_pred CCCCeEEEEE--CCcEEEEeeCCCCCCCCCchHHHHHHHHHHHHHCCCcccccccceeeeeccchhhhhhhhhhhcccCc
Q psy9259 322 CNHRTLGFTV--DERSKTRGMNEVNATKNATRHAEMVCIDHIVRQYPSTYRRVFESITVIVNVEPCIMCMAALLRVFESI 399 (489)
Q Consensus 322 C~~~~VGaVi--dG~IIa~G~N~~~~~~dpt~HAE~~AI~~a~~~l~~~~r~~~~s~~l~~~~ep~~l~~~~~~~~l~g~ 399 (489)
|..++||||+ ||+||++|||.. .++.|||++||++|.++ ++||
T Consensus 22 ~~~~~vGaviv~~g~ii~~g~n~~----~g~~HAE~~ai~~a~~~-------------------------------~~g~ 66 (367)
T PRK10786 22 HPNPNVGCVIVKDGEIVGEGYHQR----AGEPHAEVHALRMAGEK-------------------------------AKGA 66 (367)
T ss_pred CCCCCEEEEEEeCCEEEEEEeCCC----CCCCCHHHHHHHHHhhh-------------------------------cCCC
Confidence 4457899986 899999999986 35699999999998753 4699
Q ss_pred EEEEecCCC------hhhHHHHHHcCCCEEEEEeeCCcccc-----cccCCcccCCCeEEEecCCCCCCcHHHHHHHHHH
Q psy9259 400 TVIVNVEPC------IMCMAALLSLNIRTIVFACSNDRFGY-----NVLGSDEKTNYIEIVENTDDNTPKDDAVIQNIKV 468 (489)
Q Consensus 400 tLYvTlEPC------~MCa~AIi~sgIkrVVyg~~d~~~Gg-----~il~~~~~~~~ieV~~gv~~~~~~~ee~~~Ll~~ 468 (489)
|||||+||| +||++||+++||+|||||+.|++.+. ..+. .++|+|..|+ +++||.++++.
T Consensus 67 tlyvTlEPC~~~g~t~mC~~aii~agI~rVv~~~~dp~~~~~g~~~~~l~----~~gi~v~~~~-----~~~e~~~l~~~ 137 (367)
T PRK10786 67 TAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQ----QAGIDVSHGL-----MMSEAEALNKG 137 (367)
T ss_pred EEEEecCCccCCCCChHHHHHHHHhCCCEEEEecCCCCcccCchHHHHHh----cCCcEEEcCC-----cHHHHHHHHHH
Confidence 999999999 89999999999999999999998753 2333 3789999887 79999999999
Q ss_pred hhhhcCCCCCcccccccc
Q psy9259 469 NSAITNPNTPIEKPTDGI 486 (489)
Q Consensus 469 F~~~~np~~P~~k~k~~~ 486 (489)
||.+.+...|+...|.|+
T Consensus 138 f~~~~~~~rP~V~~k~A~ 155 (367)
T PRK10786 138 FLKRMRTGFPYIQLKLGA 155 (367)
T ss_pred HHHHhhcccceEEEEEee
Confidence 999999999999998876
No 4
>PLN02807 diaminohydroxyphosphoribosylaminopyrimidine deaminase
Probab=99.90 E-value=2.8e-23 Score=217.05 Aligned_cols=118 Identities=18% Similarity=0.232 Sum_probs=102.8
Q ss_pred CeEEEEE--CCcEEEEeeCCCCCCCCCchHHHHHHHHHHHHHCCCcccccccceeeeeccchhhhhhhhhhhcccCcEEE
Q psy9259 325 RTLGFTV--DERSKTRGMNEVNATKNATRHAEMVCIDHIVRQYPSTYRRVFESITVIVNVEPCIMCMAALLRVFESITVI 402 (489)
Q Consensus 325 ~~VGaVi--dG~IIa~G~N~~~~~~dpt~HAE~~AI~~a~~~l~~~~r~~~~s~~l~~~~ep~~l~~~~~~~~l~g~tLY 402 (489)
++||||+ ||+||++|||.. .+..|||++||++|.+. +.|||||
T Consensus 54 p~VGaViV~~g~Ii~~g~n~~----~g~~HAEi~Ai~~a~~~-------------------------------~~g~tly 98 (380)
T PLN02807 54 PMVGCVIVKDGRIVGEGFHPK----AGQPHAEVFALRDAGDL-------------------------------AENATAY 98 (380)
T ss_pred CCEEEEEEECCEEEEEEeCCC----CCCcCHHHHHHHHhhhh-------------------------------cCCcEEE
Confidence 6799985 999999999986 36689999999998753 4699999
Q ss_pred EecCCC------hhhHHHHHHcCCCEEEEEeeCCcccc-----cccCCcccCCCeEEEecCCCCCCcHHHHHHHHHHhhh
Q psy9259 403 VNVEPC------IMCMAALLSLNIRTIVFACSNDRFGY-----NVLGSDEKTNYIEIVENTDDNTPKDDAVIQNIKVNSA 471 (489)
Q Consensus 403 vTlEPC------~MCa~AIi~sgIkrVVyg~~d~~~Gg-----~il~~~~~~~~ieV~~gv~~~~~~~ee~~~Ll~~F~~ 471 (489)
||+||| +||++||+++||+|||||+.|++.+. .++. .++|+|..|+ +++||.+|++.||+
T Consensus 99 vTLEPC~h~Gktp~C~~aii~agI~rVv~g~~dp~~~~~g~g~~~l~----~~gi~V~~g~-----~~~e~~~l~~~f~~ 169 (380)
T PLN02807 99 VSLEPCNHYGRTPPCTEALIKAKVKRVVVGMVDPNPIVASKGIERLR----DAGIEVTVGV-----EEELCRKLNEAFIH 169 (380)
T ss_pred EEcCCCcCCCCChHHHHHHHHhCCCEEEEEecCCCccccchHHHHHH----hCCCEEEeCc-----CHHHHHHHHHHHHH
Confidence 999999 89999999999999999999998642 2343 2679999888 79999999999999
Q ss_pred hcCCCCCcccccccc
Q psy9259 472 ITNPNTPIEKPTDGI 486 (489)
Q Consensus 472 ~~np~~P~~k~k~~~ 486 (489)
+.....|+...|.|+
T Consensus 170 ~~~~~rP~V~lK~A~ 184 (380)
T PLN02807 170 RMLTGKPFVTLRYSM 184 (380)
T ss_pred HHhhccccEEEEEEE
Confidence 988899999999876
No 5
>TIGR00326 eubact_ribD riboflavin biosynthesis protein RibD. This model describes the ribD protein as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region captured in the model dCMP_cyt_deam and shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins believed related to riboflavin biosynthesis contain only this C-terminal domain and are not found as full-length matches to this model.
Probab=99.90 E-value=1.8e-23 Score=215.84 Aligned_cols=119 Identities=16% Similarity=0.181 Sum_probs=103.1
Q ss_pred CCeEEEEE--CCcEEEEeeCCCCCCCCCchHHHHHHHHHHHHHCCCcccccccceeeeeccchhhhhhhhhhhcccCcEE
Q psy9259 324 HRTLGFTV--DERSKTRGMNEVNATKNATRHAEMVCIDHIVRQYPSTYRRVFESITVIVNVEPCIMCMAALLRVFESITV 401 (489)
Q Consensus 324 ~~~VGaVi--dG~IIa~G~N~~~~~~dpt~HAE~~AI~~a~~~l~~~~r~~~~s~~l~~~~ep~~l~~~~~~~~l~g~tL 401 (489)
.+|||||+ ||+||++|||+. .++.|||++||++|.++ ++||||
T Consensus 18 ~~~vGaviv~~~~ii~~g~n~~----~~~~HAE~~ai~~a~~~-------------------------------~~g~tl 62 (344)
T TIGR00326 18 NPLVGCVIVKNGEIVGEGAHQK----AGEPHAEVHALRQAGEN-------------------------------AKGATA 62 (344)
T ss_pred CCCEEEEEEeCCEEEEEeeCCC----CCCCCHHHHHHHHhccc-------------------------------cCCcEE
Confidence 36899975 999999999986 57999999999998653 469999
Q ss_pred EEecCCC------hhhHHHHHHcCCCEEEEEeeCCcccc-----cccCCcccCCCeEEEecCCCCCCcHHHHHHHHHHhh
Q psy9259 402 IVNVEPC------IMCMAALLSLNIRTIVFACSNDRFGY-----NVLGSDEKTNYIEIVENTDDNTPKDDAVIQNIKVNS 470 (489)
Q Consensus 402 YvTlEPC------~MCa~AIi~sgIkrVVyg~~d~~~Gg-----~il~~~~~~~~ieV~~gv~~~~~~~ee~~~Ll~~F~ 470 (489)
|||+||| +||++||+++||+|||||+.|++.+. .++. ..+++|..|+ +++||.+|++.||
T Consensus 63 yvtlEPC~~~g~~~~C~~ai~~~gi~~vv~~~~d~~~~~~~~~~~~l~----~~gi~v~~~~-----~~~e~~~l~~~f~ 133 (344)
T TIGR00326 63 YVTLEPCSHQGRTPPCAEAIIEAGIKKVVVSMQDPNPLVAGRGAERLK----QAGIEVTFGI-----LKEEAERLNKGFL 133 (344)
T ss_pred EEeCCCCCCCCCCcHHHHHHHHcCCCEEEEEeCCCCccccchHHHHHh----cCCcEEEeCC-----CHHHHHHHHHHHH
Confidence 9999999 89999999999999999999988653 2233 2579998877 7999999999999
Q ss_pred hhcCCCCCcccccccc
Q psy9259 471 AITNPNTPIEKPTDGI 486 (489)
Q Consensus 471 ~~~np~~P~~k~k~~~ 486 (489)
.+.+..+|+..-|.++
T Consensus 134 ~~~~~~rP~v~~~~a~ 149 (344)
T TIGR00326 134 KRMRTGLPYVQLKLAA 149 (344)
T ss_pred HhhhcCCCEEEEEEee
Confidence 9999999999888765
No 6
>cd01285 nucleoside_deaminase Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. The functional enzyme is a homodimer. Cytosine deaminase catalyzes the deamination of cytosine to uracil and ammonia and is a member of the pyrimidine salvage pathway. Cytosine deaminase is found in bacteria and fungi but is not present in mammals; for this reason, the enzyme is currently of interest for antimicrobial drug design and gene therapy applications against tumors. Some members of this family are tRNA-specific adenosine deaminases that generate inosine at the first position of their anticodon (position 34) of specific tRNAs; this modification is thought to enlarge the codon recognition capacity during protei
Probab=99.88 E-value=7.3e-23 Score=178.62 Aligned_cols=84 Identities=33% Similarity=0.602 Sum_probs=75.6
Q ss_pred CeEEEEE---CCcEEEEeeCCCCCCCCCchHHHHHHHHHHHHHCCCcccccccceeeeeccchhhhhhhhhhhcccCcEE
Q psy9259 325 RTLGFTV---DERSKTRGMNEVNATKNATRHAEMVCIDHIVRQYPSTYRRVFESITVIVNVEPCIMCMAALLRVFESITV 401 (489)
Q Consensus 325 ~~VGaVi---dG~IIa~G~N~~~~~~dpt~HAE~~AI~~a~~~l~~~~r~~~~s~~l~~~~ep~~l~~~~~~~~l~g~tL 401 (489)
.||||++ ||+||+.|+|++.+..|++.|||++||+++.++++. + .+++++|
T Consensus 17 ~~vgaviv~~~~~ii~~g~n~~~~~~~~~~HAE~~ai~~~~~~~~~-~-------------------------~~~~~~l 70 (109)
T cd01285 17 VPFGAVIVDDDGKVIARGHNRVEQDGDPTAHAEIVAIRNAARRLGS-Y-------------------------LLSGCTL 70 (109)
T ss_pred CcEEEEEEeCCCEEEEEEeCCCCCCCCCcccHHHHHHHHHHHHhCC-C-------------------------ccCCeEE
Confidence 4678875 599999999999988999999999999999987643 1 3789999
Q ss_pred EEecCCChhhHHHHHHcCCCEEEEEeeCCcccc
Q psy9259 402 IVNVEPCIMCMAALLSLNIRTIVFACSNDRFGY 434 (489)
Q Consensus 402 YvTlEPC~MCa~AIi~sgIkrVVyg~~d~~~Gg 434 (489)
|+|+|||+||++||+|+||++|||+.++++.|+
T Consensus 71 y~t~EPC~mC~~ai~~~gi~~Vvy~~~~~~~g~ 103 (109)
T cd01285 71 YTTLEPCPMCAGALLWARIKRVVYGASDPKLGG 103 (109)
T ss_pred EEeCCChHHHHHHHHHHCCCEEEEEecCCcccc
Confidence 999999999999999999999999999998774
No 7
>PHA02588 cd deoxycytidylate deaminase; Provisional
Probab=99.87 E-value=7.9e-22 Score=185.17 Aligned_cols=107 Identities=24% Similarity=0.380 Sum_probs=82.5
Q ss_pred CCCCeEEEEE--CCcEEEEeeCCCCCC--------------------------------CCCchHHHHHHHHHHHHHCCC
Q psy9259 322 CNHRTLGFTV--DERSKTRGMNEVNAT--------------------------------KNATRHAEMVCIDHIVRQYPS 367 (489)
Q Consensus 322 C~~~~VGaVi--dG~IIa~G~N~~~~~--------------------------------~dpt~HAE~~AI~~a~~~l~~ 367 (489)
|.+.|||||+ ||+||++|||.++.. .+++.|||++||+++.++ +.
T Consensus 19 ~~~~~VGAVIV~~~~Iis~GyNg~p~g~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HAE~nAi~~a~~~-~~ 97 (168)
T PHA02588 19 CVSWKVGAVIEKNGRIISTGYNGTPAGGVNCCDHANEQGWLDDEGKLKKEHRPEHSAWSSKNEIHAELNAILFAARN-GI 97 (168)
T ss_pred CCCCCEEEEEEECCEEEEEEeCCCCcCCcccccccccccccccccccccccccccccccCCCCccHHHHHHHHHhhc-CC
Confidence 4457889975 999999999998643 367889999999998864 21
Q ss_pred cccccccceeeeeccchhhhhhhhhhhcccCcEEEEecCCChhhHHHHHHcCCCEEEEEeeCCccc---ccccCCcccCC
Q psy9259 368 TYRRVFESITVIVNVEPCIMCMAALLRVFESITVIVNVEPCIMCMAALLSLNIRTIVFACSNDRFG---YNVLGSDEKTN 444 (489)
Q Consensus 368 ~~r~~~~s~~l~~~~ep~~l~~~~~~~~l~g~tLYvTlEPC~MCa~AIi~sgIkrVVyg~~d~~~G---g~il~~~~~~~ 444 (489)
.+.|++||||+|||+||+++|+++||++|||+..++... ..+|.. .
T Consensus 98 ---------------------------~~~g~tLYvTlePC~~Ca~aI~~~gI~rVvy~~~~~~~~~~~~~~L~~----~ 146 (168)
T PHA02588 98 ---------------------------SIEGATMYVTASPCPDCAKAIAQSGIKKLVYCEKYDRNGPGWDDILRK----S 146 (168)
T ss_pred ---------------------------CCCCcEEEEeCCCcHHHHHHHHHhCCCEEEEeeccCCCcHHHHHHHHH----C
Confidence 268999999999999999999999999999999754332 245553 6
Q ss_pred CeEEEecCCCCCCcHHHHHHHH
Q psy9259 445 YIEIVENTDDNTPKDDAVIQNI 466 (489)
Q Consensus 445 ~ieV~~gv~~~~~~~ee~~~Ll 466 (489)
+++|.. + ..+++.+|+
T Consensus 147 Gi~v~~-~-----~~~~~~~~~ 162 (168)
T PHA02588 147 GIEVIQ-I-----PKEELNKLN 162 (168)
T ss_pred CCEEEE-e-----CHHHHHhhh
Confidence 788875 4 456554443
No 8
>KOG1018|consensus
Probab=99.87 E-value=7.3e-22 Score=185.27 Aligned_cols=125 Identities=28% Similarity=0.417 Sum_probs=101.7
Q ss_pred CeEEEE--E-CCcEEEEeeCCCCCCCCCchHHHHHHHHH---HHHHCCCcccccccceeeeeccchhhhhhhhhhhcccC
Q psy9259 325 RTLGFT--V-DERSKTRGMNEVNATKNATRHAEMVCIDH---IVRQYPSTYRRVFESITVIVNVEPCIMCMAALLRVFES 398 (489)
Q Consensus 325 ~~VGaV--i-dG~IIa~G~N~~~~~~dpt~HAE~~AI~~---a~~~l~~~~r~~~~s~~l~~~~ep~~l~~~~~~~~l~g 398 (489)
.||||| . ||+|+++|+|.+++..|+++|||+.||+. .++.+.. | ++++
T Consensus 32 ~pvg~vlV~~~g~v~a~g~n~~~~~~d~t~HaE~~~I~~~~~~~~~~~~-~-------------------------~ls~ 85 (169)
T KOG1018|consen 32 VPVGAVLVHMDGKVLASGGNMVNEKKDPTAHAEVIAIREEEVMCKSLRT-I-------------------------DLSE 85 (169)
T ss_pred CceEEEEEeCCCeEEecccceecccCCcchhhHHHHHhhHHHHhhhcCc-e-------------------------eccC
Confidence 567875 4 89999999999999999999999999999 6655432 2 4899
Q ss_pred cEEEEecCCChhhHHHHHHcCCCEEEEEeeCCccccc--ccC-C-c---ccCCCeEEEecCCCCCCcHHHHHHHHHHhhh
Q psy9259 399 ITVIVNVEPCIMCMAALLSLNIRTIVFACSNDRFGYN--VLG-S-D---EKTNYIEIVENTDDNTPKDDAVIQNIKVNSA 471 (489)
Q Consensus 399 ~tLYvTlEPC~MCa~AIi~sgIkrVVyg~~d~~~Gg~--il~-~-~---~~~~~ieV~~gv~~~~~~~ee~~~Ll~~F~~ 471 (489)
++||||+|||+||++||.|+||++||||+.++++|+. .+. . + ...+++....++ ..+++..+++.|+-
T Consensus 86 ~tlyvt~ePc~mC~gal~~~gv~~vv~G~~ne~~~~~~~~~~~~~~~l~~~~~~~~~~~~i-----~~~~~~~~~~~f~~ 160 (169)
T KOG1018|consen 86 TTLYVTCEPCPMCAGALAQSGVKRVVFGASNERFGGIGFVLRGNKDFLKRLGASVISRDGI-----EKKEAQKLLIAFYV 160 (169)
T ss_pred CEEEEEecccHHHHHHHHHcCCCEEEEecccccccccceeeeehhhhhccCCcceEeccch-----hhHHhhhHHHhhcc
Confidence 9999999999999999999999999999999998852 111 0 0 123455666666 67888889999999
Q ss_pred hcCCCCCcc
Q psy9259 472 ITNPNTPIE 480 (489)
Q Consensus 472 ~~np~~P~~ 480 (489)
+.|+.+|.+
T Consensus 161 ~~n~~~~~~ 169 (169)
T KOG1018|consen 161 RDNPKDPGE 169 (169)
T ss_pred ccccCCCCC
Confidence 999998863
No 9
>TIGR02571 ComEB ComE operon protein 2. This protein is found in the ComE operon for "late competence" as characterized in B. subtilis. Proteins in this family contain homology to a cytidine/deoxycytidine deaminase domain family (pfam00383), and may carry out this activity.
Probab=99.86 E-value=1.3e-21 Score=180.72 Aligned_cols=98 Identities=22% Similarity=0.359 Sum_probs=77.7
Q ss_pred CCCCCeEEEEE--CCcEEEEeeCCCCCCC---------------CCchHHHHHHHHHHHHHCCCcccccccceeeeeccc
Q psy9259 321 HCNHRTLGFTV--DERSKTRGMNEVNATK---------------NATRHAEMVCIDHIVRQYPSTYRRVFESITVIVNVE 383 (489)
Q Consensus 321 ~C~~~~VGaVi--dG~IIa~G~N~~~~~~---------------dpt~HAE~~AI~~a~~~l~~~~r~~~~s~~l~~~~e 383 (489)
.|.+.|||||+ ||+||++|+|+..... +++.|||++||+++.+. +.
T Consensus 21 ~~~~~~VGAVIV~d~~IIs~GyN~~~~g~~~~~~~~~~~~~~~~~~~~HAE~nAI~~a~~~-~~---------------- 83 (151)
T TIGR02571 21 TCTRLSVGATIVRDKRIIAGGYNGSVAGGVHCIDEGCYVVDGHCVRTIHAEMNALLQCAKF-GV---------------- 83 (151)
T ss_pred CCCCCCEEEEEEECCEEEEEEECCCCCCCCccccccccccccccCCccCHHHHHHHHHHhc-CC----------------
Confidence 34557899975 9999999999986543 57899999999998753 21
Q ss_pred hhhhhhhhhhhcccCcEEEEecCCChhhHHHHHHcCCCEEEEEeeCCcc--cccccCCcccCCCeEEEe
Q psy9259 384 PCIMCMAALLRVFESITVIVNVEPCIMCMAALLSLNIRTIVFACSNDRF--GYNVLGSDEKTNYIEIVE 450 (489)
Q Consensus 384 p~~l~~~~~~~~l~g~tLYvTlEPC~MCa~AIi~sgIkrVVyg~~d~~~--Gg~il~~~~~~~~ieV~~ 450 (489)
.+.|++||||+|||+||+++|+++||++|||+..++.. |..+|.. .+|+|..
T Consensus 84 -----------~l~g~tlYvT~ePC~~Ca~ai~~agI~~Vvy~~~~~~~~~~~~~l~~----~gi~v~~ 137 (151)
T TIGR02571 84 -----------STEGAEIYVTHFPCLQCTKSIIQAGIKKIYYAQDYHNHPYAIELFEQ----AGVELKK 137 (151)
T ss_pred -----------CcCCcEEEEeCCCcHHHHHHHHHhCCCEEEEccCCCCcHHHHHHHHH----CCCEEEE
Confidence 26799999999999999999999999999999765443 2245553 5677765
No 10
>COG0117 RibD Pyrimidine deaminase [Coenzyme metabolism]
Probab=99.86 E-value=1.7e-21 Score=176.88 Aligned_cols=127 Identities=19% Similarity=0.199 Sum_probs=104.2
Q ss_pred hhHHHHHHHHhcCccccccccccccccCCCCCCCeEEEEE--CCcEEEEeeCCCCCCCCCchHHHHHHHHHHHHHCCCcc
Q psy9259 292 WVENTTKKLKDLGVLHYFTSESQNIPNHEHCNHRTLGFTV--DERSKTRGMNEVNATKNATRHAEMVCIDHIVRQYPSTY 369 (489)
Q Consensus 292 W~E~a~~aLeEAgvL~~L~~ea~evP~~s~C~~~~VGaVi--dG~IIa~G~N~~~~~~dpt~HAE~~AI~~a~~~l~~~~ 369 (489)
-+++|..+|+.|.. .+....|+ ++||||+ ||+||++|++.. -+..|||+.||++|..
T Consensus 6 ~~~~M~~Al~lA~k-----~~g~T~pN------P~VG~VIV~~~~Ivg~G~h~~----aG~pHAEv~Al~~ag~------ 64 (146)
T COG0117 6 DERYMERALELAEK-----GQGTTSPN------PSVGCVIVKDGEIVGEGYHEK----AGGPHAEVCALRMAGE------ 64 (146)
T ss_pred HHHHHHHHHHHHHh-----cCCcCCCC------CceeEEEEECCEEEeeeecCC----CCCCcHHHHHHHHcCc------
Confidence 45677777877762 33344454 7899986 899999999976 5889999999999842
Q ss_pred cccccceeeeeccchhhhhhhhhhhcccCcEEEEecCCC------hhhHHHHHHcCCCEEEEEeeCCcc---c-c-cccC
Q psy9259 370 RRVFESITVIVNVEPCIMCMAALLRVFESITVIVNVEPC------IMCMAALLSLNIRTIVFACSNDRF---G-Y-NVLG 438 (489)
Q Consensus 370 r~~~~s~~l~~~~ep~~l~~~~~~~~l~g~tLYvTlEPC------~MCa~AIi~sgIkrVVyg~~d~~~---G-g-~il~ 438 (489)
..+|+|+||||||| |.|+.+|+.+||+|||++..||+. | | ..|.
T Consensus 65 -------------------------~a~Gat~yVTLEPCsH~GrTPPC~~ali~agi~rVvva~~DPnp~Vag~G~~~L~ 119 (146)
T COG0117 65 -------------------------AARGATAYVTLEPCSHYGRTPPCADALIKAGVARVVVAMLDPNPLVAGGGLARLR 119 (146)
T ss_pred -------------------------ccCCCEEEEEecCcccCCCCcchHHHHHHhCCCEEEEEecCCCccccCchHHHHH
Confidence 26799999999999 899999999999999999999993 2 2 3444
Q ss_pred CcccCCCeEEEecCCCCCCcHHHHHHHHHHhhhhc
Q psy9259 439 SDEKTNYIEIVENTDDNTPKDDAVIQNIKVNSAIT 473 (489)
Q Consensus 439 ~~~~~~~ieV~~gv~~~~~~~ee~~~Ll~~F~~~~ 473 (489)
. ++|+|..|+ +++|+..|++.|+.+.
T Consensus 120 ~----aGi~V~~gi-----l~~e~~~l~~~f~~~~ 145 (146)
T COG0117 120 A----AGIEVEVGI-----LEEEAEKLNEGFLKRM 145 (146)
T ss_pred H----cCCeEEEeh-----hHHHHHHHHHHHHccc
Confidence 3 789999988 8999999999998764
No 11
>cd01286 deoxycytidylate_deaminase Deoxycytidylate deaminase domain. Deoxycytidylate deaminase catalyzes the deamination of dCMP to dUMP, providing the nucleotide substrate for thymidylate synthase. The enzyme binds Zn++, which is required for catalytic activity. The activity of the enzyme is allosterically regulated by the ratio of dCTP to dTTP not only in eukaryotic cells but also in T-even phage-infected Escherichia coli, with dCTP acting as an activator and dTTP as an inhibitor.
Probab=99.84 E-value=1.2e-20 Score=170.24 Aligned_cols=83 Identities=29% Similarity=0.445 Sum_probs=71.1
Q ss_pred CCCCeEEEEE--CCcEEEEeeCCCC---------------------CCCCCchHHHHHHHHHHHHHCCCcccccccceee
Q psy9259 322 CNHRTLGFTV--DERSKTRGMNEVN---------------------ATKNATRHAEMVCIDHIVRQYPSTYRRVFESITV 378 (489)
Q Consensus 322 C~~~~VGaVi--dG~IIa~G~N~~~---------------------~~~dpt~HAE~~AI~~a~~~l~~~~r~~~~s~~l 378 (489)
|...+||||+ +|+||++|+|++. ...+++.|||++||+++.++ +.
T Consensus 17 ~~~~~VGAViv~~~~iI~~G~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~a~~~-~~----------- 84 (131)
T cd01286 17 CPRRQVGAVIVKDKRIISTGYNGSPSGLPHCAEVGCERDDLPSGEDQKCCRTVHAEQNAILQAARH-GV----------- 84 (131)
T ss_pred CCCCCEEEEEEECCEEEEEeeCCCCCCCCCcccccccccccccccccccCCCCCHHHHHHHHHhHc-CC-----------
Confidence 3347889975 8999999999985 35679999999999999875 22
Q ss_pred eeccchhhhhhhhhhhcccCcEEEEecCCChhhHHHHHHcCCCEEEEEeeCCcc
Q psy9259 379 IVNVEPCIMCMAALLRVFESITVIVNVEPCIMCMAALLSLNIRTIVFACSNDRF 432 (489)
Q Consensus 379 ~~~~ep~~l~~~~~~~~l~g~tLYvTlEPC~MCa~AIi~sgIkrVVyg~~d~~~ 432 (489)
.+++++||||+|||+||+.+|+++||++|||+.+.+..
T Consensus 85 ----------------~~~~~tLyvT~ePC~~C~~ai~~~gI~~Vvy~~~~~~~ 122 (131)
T cd01286 85 ----------------SLEGATLYVTLFPCIECAKLIIQAGIKKVVYAEPYDDD 122 (131)
T ss_pred ----------------CcCCeEEEEecCcHHHHHHHHHHhCCCEEEEeeccCcc
Confidence 26799999999999999999999999999999987663
No 12
>cd01284 Riboflavin_deaminase-reductase Riboflavin-specific deaminase. Riboflavin biosynthesis protein RibD (Diaminohydroxyphosphoribosylaminopyrimidine deaminase) catalyzes the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate, which is an intermediate step in the biosynthesis of riboflavin.The ribG gene of Bacillus subtilis and the ribD gene of E. coli are bifunctional and contain this deaminase domain and a reductase domain which catalyzes the subsequent reduction of the ribosyl side chain.
Probab=99.82 E-value=4.7e-20 Score=163.20 Aligned_cols=75 Identities=20% Similarity=0.344 Sum_probs=67.3
Q ss_pred CeEEEEE---CCcEEEEeeCCCCCCCCCchHHHHHHHHHHHHHCCCcccccccceeeeeccchhhhhhhhhhhcccCcEE
Q psy9259 325 RTLGFTV---DERSKTRGMNEVNATKNATRHAEMVCIDHIVRQYPSTYRRVFESITVIVNVEPCIMCMAALLRVFESITV 401 (489)
Q Consensus 325 ~~VGaVi---dG~IIa~G~N~~~~~~dpt~HAE~~AI~~a~~~l~~~~r~~~~s~~l~~~~ep~~l~~~~~~~~l~g~tL 401 (489)
.|||||+ ||+||++|+|++. ++.|||++||+++.++ + ++++||
T Consensus 19 ~pvGaviv~~~g~iv~~g~n~~~----~~~HAE~~ai~~a~~~---~---------------------------l~g~tl 64 (115)
T cd01284 19 PPVGCVIVDDDGEIVGEGYHRKA----GGPHAEVNALASAGEK---L---------------------------ARGATL 64 (115)
T ss_pred CCEEEEEEeCCCeEEEEecCCCC----CcccHHHHHHHHHhhc---C---------------------------CCCeEE
Confidence 6789975 5999999999974 8999999999999864 1 679999
Q ss_pred EEecCCC------hhhHHHHHHcCCCEEEEEeeCCccc
Q psy9259 402 IVNVEPC------IMCMAALLSLNIRTIVFACSNDRFG 433 (489)
Q Consensus 402 YvTlEPC------~MCa~AIi~sgIkrVVyg~~d~~~G 433 (489)
|||+||| +||++||+|+||++|||+..+++.+
T Consensus 65 y~TlEPC~~~~~~~mC~~ai~~~gi~~Vv~g~~~~~~~ 102 (115)
T cd01284 65 YVTLEPCSHHGKTPPCVDAIIEAGIKRVVVGVRDPNPL 102 (115)
T ss_pred EEeCCCCCCCCCchHHHHHHHHHCcCEEEEEecCCCcc
Confidence 9999999 8999999999999999999999854
No 13
>PF00383 dCMP_cyt_deam_1: Cytidine and deoxycytidylate deaminase zinc-binding region; InterPro: IPR002125 Cytidine deaminase (3.5.4.5 from EC) (cytidine aminohydrolase) catalyzes the hydrolysis of cytidine into uridine and ammonia while deoxycytidylate deaminase (3.5.4.12 from EC) (dCMP deaminase) hydrolyzes dCMP into dUMP. Both enzymes are known to bind zinc and to require it for their catalytic activity [, ]. These two enzymes do not share any sequence similarity with the exception of a region that contains three conserved histidine and cysteine residues which are thought to be involved in the binding of the catalytic zinc ion. Such a region is also found in other proteins [, ]: Yeast cytosine deaminase (3.5.4.1 from EC) (gene FCY1) which transforms cytosine into uracil. Mammalian apolipoprotein B mRNA editing protein, responsible for the postranscriptional editing of a CAA codon into a UAA (stop) codon in the APOB mRNA. Riboflavin biosynthesis protein ribG, which converts 2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1H,3H)-pyrimidinedione 5'-phosphate. Bacillus cereus blasticidin-S deaminase (3.5.4.23 from EC), which catalyzes the deamination of the cytosine moiety of the antibiotics blasticidin S, cytomycin and acetylblasticidin S. Bacillus subtilis protein comEB. This protein is required for the binding and uptake of transforming DNA. B. subtilis hypothetical protein yaaJ. Escherichia coli hypothetical protein yfhC. Yeast hypothetical protein YJL035c. ; GO: 0008270 zinc ion binding, 0016787 hydrolase activity; PDB: 3MPZ_C 3R2N_C 1WKQ_A 1TIY_B 2B3J_C 2O7P_B 2OBC_A 2G6V_B 2D30_B 2D5N_B ....
Probab=99.80 E-value=2.2e-19 Score=153.26 Aligned_cols=77 Identities=30% Similarity=0.484 Sum_probs=65.5
Q ss_pred CCeEEEEE---CCcEEEEeeCCCCCCCCCchHHHHHHHHHHHHHCCCcccccccceeeeeccchhhhhhhhhhhcccCcE
Q psy9259 324 HRTLGFTV---DERSKTRGMNEVNATKNATRHAEMVCIDHIVRQYPSTYRRVFESITVIVNVEPCIMCMAALLRVFESIT 400 (489)
Q Consensus 324 ~~~VGaVi---dG~IIa~G~N~~~~~~dpt~HAE~~AI~~a~~~l~~~~r~~~~s~~l~~~~ep~~l~~~~~~~~l~g~t 400 (489)
..+||||+ +|++|+.|+|......+++.|||++||.++.+. +. . .+++++
T Consensus 23 ~~~vgaviv~~~~~~i~~g~n~~~~~~~~~~HAE~~Ai~~~~~~-~~-~-------------------------~~~~~~ 75 (102)
T PF00383_consen 23 NFPVGAVIVDPDGKIIATGYNGEPPGKNPTIHAEMNAIRKAARN-GG-S-------------------------SLKGCT 75 (102)
T ss_dssp SSSEEEEEEETTTEEEEEEESBHHSTTGGTB-HHHHHHHHHHHT-TS-S-------------------------GETTEE
T ss_pred CCCEEEEEEeccCccEEEEeeeeeeeccccccchhhhhhhhhhh-cc-c-------------------------cccCcc
Confidence 46789875 689999999999888889999999999999987 42 1 268999
Q ss_pred EEEecCCChhhHHHHHHcCCCEEEEEe
Q psy9259 401 VIVNVEPCIMCMAALLSLNIRTIVFAC 427 (489)
Q Consensus 401 LYvTlEPC~MCa~AIi~sgIkrVVyg~ 427 (489)
||||+|||+||+++|+|+||+||||+.
T Consensus 76 lyvt~ePC~~C~~ai~~~gi~~vvy~~ 102 (102)
T PF00383_consen 76 LYVTLEPCGMCAMAIVHAGIKRVVYGT 102 (102)
T ss_dssp EEEEE--BHHHHHHHHHHTSSEEEEEE
T ss_pred cccCCCCHHHHHHHHHHHCcCeEEEeC
Confidence 999999999999999999999999985
No 14
>cd00786 cytidine_deaminase-like Cytidine and deoxycytidylate deaminase zinc-binding region. The family contains cytidine deaminases, nucleoside deaminases, deoxycytidylate deaminases and riboflavin deaminases. Also included are the apoBec family of mRNA editing enzymes. All members are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate.
Probab=99.79 E-value=3e-19 Score=152.61 Aligned_cols=75 Identities=20% Similarity=0.299 Sum_probs=67.1
Q ss_pred CCeEEEEE--C--CcEEEEeeCCCCCCCCCchHHHHHHHHHHHHHCCCcccccccceeeeeccchhhhhhhhhhhcccCc
Q psy9259 324 HRTLGFTV--D--ERSKTRGMNEVNATKNATRHAEMVCIDHIVRQYPSTYRRVFESITVIVNVEPCIMCMAALLRVFESI 399 (489)
Q Consensus 324 ~~~VGaVi--d--G~IIa~G~N~~~~~~dpt~HAE~~AI~~a~~~l~~~~r~~~~s~~l~~~~ep~~l~~~~~~~~l~g~ 399 (489)
..||||++ + |+|+++|+|..+...+++.|||++||+++.++.. ++++
T Consensus 17 ~~pVGaviv~~~~g~ii~~g~n~~~~~~~~~~HAE~~ai~~a~~~~~-----------------------------~~~~ 67 (96)
T cd00786 17 NFQVGACLVNKKDGGKVGRGCNIENAAYSMCNHAERTALFNAGSEGD-----------------------------TKGQ 67 (96)
T ss_pred CCCEEEEEEEeCCCCeEeeeEeccCCCCCCeeCHHHHHHHHHHHcCC-----------------------------CCce
Confidence 36789874 4 9999999999998899999999999999876521 5799
Q ss_pred EEEEecCCChhhHHHHHHcCCCEEEEEe
Q psy9259 400 TVIVNVEPCIMCMAALLSLNIRTIVFAC 427 (489)
Q Consensus 400 tLYvTlEPC~MCa~AIi~sgIkrVVyg~ 427 (489)
+||||+|||.||+++|+|+||++|||+.
T Consensus 68 tly~tlePC~mC~~ai~~~gi~~Vv~~~ 95 (96)
T cd00786 68 MLYVALSPCGACAQLIIELGIKDVIVVL 95 (96)
T ss_pred EEEEECCChHHHHHHHHHhCCCCEEEee
Confidence 9999999999999999999999999986
No 15
>COG2131 ComEB Deoxycytidylate deaminase [Nucleotide transport and metabolism]
Probab=99.68 E-value=1.9e-16 Score=147.27 Aligned_cols=101 Identities=24% Similarity=0.326 Sum_probs=82.8
Q ss_pred hhhHHHHHHHHhcCccccccccccccccCCCCCCCeEEEEE--CCcEEEEeeCCCCCCCC--------------------
Q psy9259 291 NWVENTTKKLKDLGVLHYFTSESQNIPNHEHCNHRTLGFTV--DERSKTRGMNEVNATKN-------------------- 348 (489)
Q Consensus 291 ~W~E~a~~aLeEAgvL~~L~~ea~evP~~s~C~~~~VGaVi--dG~IIa~G~N~~~~~~d-------------------- 348 (489)
.|.++.++...-.. .+|.|.+..||||+ ||+|||+|||..+...+
T Consensus 7 ~wdeyfm~~A~l~a-------------~Rstc~r~~VGAvIvkd~rIiatGYNG~p~g~~~c~~~g~~~~~~~~~~~~~~ 73 (164)
T COG2131 7 MWDEYFMAIAELVA-------------LRSTCPRRQVGAVIVKDGRIIATGYNGAPSGEDHCIDRGCLRDKVVFVTTCGH 73 (164)
T ss_pred HHHHHHHHHHHHHH-------------HHccCcccceeEEEEeCCeEEEeecCCCCcccCCcCccCceecccccccchhH
Confidence 49998776654442 35789999999985 99999999998764321
Q ss_pred --CchHHHHHHHHHHHHHCCCcccccccceeeeeccchhhhhhhhhhhcccCcEEEEecCCChhhHHHHHHcCCCEEEEE
Q psy9259 349 --ATRHAEMVCIDHIVRQYPSTYRRVFESITVIVNVEPCIMCMAALLRVFESITVIVNVEPCIMCMAALLSLNIRTIVFA 426 (489)
Q Consensus 349 --pt~HAE~~AI~~a~~~l~~~~r~~~~s~~l~~~~ep~~l~~~~~~~~l~g~tLYvTlEPC~MCa~AIi~sgIkrVVyg 426 (489)
.+-|||++||-+|++..- .+.|++||||+.||.+|+..|+++||++|||+
T Consensus 74 ~~r~vHAE~NAil~aa~~g~----------------------------~~~~atlYvt~~PC~~Cak~Ii~aGIk~Vvy~ 125 (164)
T COG2131 74 CCRTLHAEQNAILQAARHGV----------------------------GLEGATLYVTHFPCSNCAKLIIQAGIKEVVYA 125 (164)
T ss_pred HHHHHHHHHHHHHHHHhcCC----------------------------CCCCcEEEEEecccHHHHHHHHHhCceEEEee
Confidence 245999999999987531 25799999999999999999999999999999
Q ss_pred eeCCcc
Q psy9259 427 CSNDRF 432 (489)
Q Consensus 427 ~~d~~~ 432 (489)
...+..
T Consensus 126 ~~Y~~~ 131 (164)
T COG2131 126 EPYPTE 131 (164)
T ss_pred cCCCcc
Confidence 988764
No 16
>COG1573 Uracil-DNA glycosylase [DNA replication, recombination, and repair]
Probab=99.46 E-value=1e-13 Score=133.83 Aligned_cols=125 Identities=22% Similarity=0.333 Sum_probs=93.9
Q ss_pred hcCCCcEEEEeecCCCccccccCcccCChh--hhhhhhcccCCCCCCcccCCCCCcCCCCCCccccchhHHHHHHHHhhC
Q psy9259 111 CNSKKKILFLGMNPGPWGMVQCGIPFGEVK--AVKGFLNIEGKVNQPEKFHKDRPIKGLDCPRSEISGKRLWELASQLSD 188 (489)
Q Consensus 111 ~~~~~rvl~lGmnPGp~Gm~qTGvPFgd~~--~vr~wlgi~~~v~~p~~ehp~rpv~g~~c~~~evSg~r~w~~~~~~~~ 188 (489)
++..++|+|||.+||. +-.+||+||.+.+ .|+.||++.+..
T Consensus 37 g~~~a~i~iVGeaPG~-~~~~tG~pF~g~aG~~L~~~l~~~~~~------------------------------------ 79 (202)
T COG1573 37 GNPTARILIVGEAPGA-GEDRTGRPFVGKAGDLLDRILGAIGGL------------------------------------ 79 (202)
T ss_pred CCCCCCEEEEeCCCCc-CcccCCCccCCchHHHHHHHHHHhhcc------------------------------------
Confidence 4557999999999999 6699999999997 999999988865
Q ss_pred CchhhhhhhchhhccccccccccCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHhhcCceEEEEechHHHHHHHHHH-H-
Q psy9259 189 GKAADFFKHAYVHNYFPLAFVSKTATNITPAELKNKTTIEKLNSICDKSLSDIVKHLGIETVIAIGKFAETRAEKAL-K- 266 (489)
Q Consensus 189 g~~~~F~~~~fv~n~cPL~f~~~~g~n~tp~~l~~~~~~~~l~~~c~~~L~~~i~~l~~~~vv~vG~~a~~~~~~~~-~- 266 (489)
||.++|+.|.+..- +.+ +|.-|. ++. .+++ ..|..+|..+|.+.+|++||+||+||.+.+.... .
T Consensus 80 -----~~~~~~it~~~~~~-~~p--~~~~~~--~p~--~~E~-~~c~~~l~~~i~l~~pkviv~LG~~A~~~~l~~~~~~ 146 (202)
T COG1573 80 -----RYEDVYITNVVKCR-YPP--GNRPPG--DPT--PEEI-KACRPFLEAEIALIRPKVILLLGEYAAKSLLGLKGEP 146 (202)
T ss_pred -----ccCceeeeeccccc-CCC--CCCCCC--CcC--hhhh-hhcchhHHHHHhcCCCCEEEEcCHHHHHHHHccccCC
Confidence 77888998665444 222 233333 222 2233 4567899999999999999999999999888654 1
Q ss_pred ------hcc------cccceEeeecCCCCCC
Q psy9259 267 ------SNR------IFTVKVTSISHPSPRN 285 (489)
Q Consensus 267 ------~~~------~~~v~V~~L~HPSprn 285 (489)
.++ ...+++++++|||+++
T Consensus 147 ~~~~~g~~~~~~~~~~~~~~~~p~~HPs~~~ 177 (202)
T COG1573 147 ITELRGRWGAYRPKGGGGIRVFPTYHPSPLN 177 (202)
T ss_pred ccccccceeeecccCCCceEEEeecCCcHHH
Confidence 111 1125699999999984
No 17
>KOG2771|consensus
Probab=99.38 E-value=4.4e-13 Score=136.29 Aligned_cols=126 Identities=20% Similarity=0.279 Sum_probs=86.0
Q ss_pred CeEEEEE----CCcEEEEeeCCCCCCCCCchHHHHHHHHHHHHHCCCc-ccccccceeeeec--cch-hhhh--------
Q psy9259 325 RTLGFTV----DERSKTRGMNEVNATKNATRHAEMVCIDHIVRQYPST-YRRVFESITVIVN--VEP-CIMC-------- 388 (489)
Q Consensus 325 ~~VGaVi----dG~IIa~G~N~~~~~~dpt~HAE~~AI~~a~~~l~~~-~r~~~~s~~l~~~--~ep-~~l~-------- 388 (489)
.++++++ -..|++.|...+-. .+|..|+-|++++..+++.... |+..... .++++ ..| |...
T Consensus 185 ~~~~a~I~~p~~~~Via~~~~~~~~-~~P~eh~~mv~v~~v~rrq~~~~~~~~~~~-~~~f~~~~~~~~~~~~~v~~~D~ 262 (344)
T KOG2771|consen 185 RPVSAAIVDPVMDRVIAAGTGEVCA-YNPIEHCVMVLVHFVARRQEEGTWDLHPIP-LLIFNAVSSPFYKQTVAVQLLDV 262 (344)
T ss_pred cCccceecCCccceEEecCCCcccc-cCcHHHHHHHHHHHHHHHHhcccccccccc-ccccccccchhhhhhchhccccc
Confidence 4557665 25677777666543 3899999999999999886432 3221100 00000 000 0000
Q ss_pred h-hhhhhcccCcEEEEecCCChhhHHHHHHcCCCEEEEEeeCCcccc-----cccCCcccCCCeEEEecC
Q psy9259 389 M-AALLRVFESITVIVNVEPCIMCMAALLSLNIRTIVFACSNDRFGY-----NVLGSDEKTNYIEIVENT 452 (489)
Q Consensus 389 ~-~~~~~~l~g~tLYvTlEPC~MCa~AIi~sgIkrVVyg~~d~~~Gg-----~il~~~~~~~~ieV~~gv 452 (489)
. ...+|+|+|+++|+|+|||.||+|||+|+||+||+|+..+...|| .+.....+||+++|+.++
T Consensus 263 ~~d~~pYLCtgydv~ll~EPC~MCsMALvHsRikRvfy~~~~s~~G~L~s~~~i~~~k~LNhry~vfr~~ 332 (344)
T KOG2771|consen 263 SADSFPYLCTGYDVYLLHEPCAMCSMALVHSRIKRVFYCKPMSTAGGLGSLYRIHQRKSLNHRYEVFRGY 332 (344)
T ss_pred cccccceeeecceEEEecChHHHHHHHHHHHhhhheeeccCCCCCCCccceeEeeeccccCcceEEEEee
Confidence 0 012478999999999999999999999999999999999777775 244456789999999987
No 18
>cd01283 cytidine_deaminase Cytidine deaminase zinc-binding domain. These enzymes are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. Cytidine deaminases catalyze the deamination of cytidine to uridine and are important in the pyrimadine salvage pathway in many cell types, from bacteria to humans. This family also includes the apoBec proteins, which are a mammal specific expansion of RNA editing enzymes, and the closely related phorbolins, and the AID (activation-induced) enzymes.
Probab=99.38 E-value=1.8e-12 Score=113.45 Aligned_cols=78 Identities=26% Similarity=0.241 Sum_probs=67.8
Q ss_pred CeEEEEE---CCcEEEEeeCCCCCCCCCchHHHHHHHHHHHHHCCCcccccccceeeeeccchhhhhhhhhhhcccCcEE
Q psy9259 325 RTLGFTV---DERSKTRGMNEVNATKNATRHAEMVCIDHIVRQYPSTYRRVFESITVIVNVEPCIMCMAALLRVFESITV 401 (489)
Q Consensus 325 ~~VGaVi---dG~IIa~G~N~~~~~~dpt~HAE~~AI~~a~~~l~~~~r~~~~s~~l~~~~ep~~l~~~~~~~~l~g~tL 401 (489)
.||||++ +|+|+ +|+|..+...+++.|||+.||.++...... ...+++
T Consensus 18 ~~vga~i~~~~g~i~-~G~n~e~~~~~~~~hAE~~ai~~~~~~~~~----------------------------~~~~~i 68 (112)
T cd01283 18 FTVGAALLTKDGRIF-TGVNVENASYGLTLCAERTAIGKAVSEGLR----------------------------RYLVTW 68 (112)
T ss_pred CeEEEEEEECCCCEE-EeEEeecCCCCCCcCHHHHHHHHHHHcCCC----------------------------ceEEEE
Confidence 5788864 69998 899998888899999999999999865321 347899
Q ss_pred EEe-----cCCChhhHHHHHHcCCCEEEEEeeCCc
Q psy9259 402 IVN-----VEPCIMCMAALLSLNIRTIVFACSNDR 431 (489)
Q Consensus 402 YvT-----lEPC~MCa~AIi~sgIkrVVyg~~d~~ 431 (489)
||| +|||.||+.+|.+.++++|+|...+++
T Consensus 69 ~vs~~~~~~sPC~~C~~~l~~~~~~~v~~~~~~~~ 103 (112)
T cd01283 69 AVSDEGGVWSPCGACRQVLAEFLPSRLYIIIDNPK 103 (112)
T ss_pred EEECCCCccCCCHHHHHHHHHhCCCCeEEEEEcCC
Confidence 999 999999999999999999999998776
No 19
>PF03167 UDG: Uracil DNA glycosylase superfamily; InterPro: IPR005122 This entry represents various uracil-DNA glycosylases and related DNA glycosylases (3.2.2 from EC), such as uracil-DNA glycosylase [], thermophilic uracil-DNA glycosylase [], G:T/U mismatch-specific DNA glycosylase (Mug) [], and single-strand selective monofunctional uracil-DNA glycosylase (SMUG1) []. These proteins have a 3-layer alpha/beta/alpha structure. Uracil-DNA glycosylases are DNA repair enzymes that excise uracil residues from DNA by cleaving the N-glycosylic bond, initiating the base excision repair pathway. Uracil in DNA can arise either through the deamination of cytosine to form mutagenic U:G mispairs, or through the incorporation of dUMP by DNA polymerase to form U:A pairs []. These aberrant uracil residues are genotoxic []. The sequence of uracil-DNA glycosylase is extremely well conserved [] in bacteria and eukaryotes as well as in herpes viruses. More distantly related uracil-DNA glycosylases are also found in poxviruses []. In eukaryotic cells, UNG activity is found in both the nucleus and the mitochondria. Human UNG1 protein is transported to both the mitochondria and the nucleus []. The N-terminal 77 amino acids of UNG1 seem to be required for mitochondrial localization, but the presence of a mitochondrial transit peptide has not been directly demonstrated. The most N-terminal conserved region contains an aspartic acid residue which has been proposed, based on X-ray structures [] to act as a general base in the catalytic mechanism. ; PDB: 1UI0_A 1UI1_A 2C2P_A 2C2Q_A 1MTL_B 1MWI_A 1MUG_A 1MWJ_A 1OKB_B 1OE6_A ....
Probab=99.34 E-value=1.6e-12 Score=116.14 Aligned_cols=141 Identities=25% Similarity=0.427 Sum_probs=100.4
Q ss_pred HhcCCCcEEEEeecCCCccccccCcccCChhhhhhhhcccCCCCCCcccCCCCCcCCCCCCccccchhHHHHHHHHhhCC
Q psy9259 110 YCNSKKKILFLGMNPGPWGMVQCGIPFGEVKAVKGFLNIEGKVNQPEKFHKDRPIKGLDCPRSEISGKRLWELASQLSDG 189 (489)
Q Consensus 110 y~~~~~rvl~lGmnPGp~Gm~qTGvPFgd~~~vr~wlgi~~~v~~p~~ehp~rpv~g~~c~~~evSg~r~w~~~~~~~~g 189 (489)
|++..+||||||++||+ +..+||+||++. +|..||.++.+.-
T Consensus 3 ~g~~~~~vlivg~~P~~-~~~~~g~~f~~~-----------------------------------~~~~l~~~l~~~g-- 44 (152)
T PF03167_consen 3 YGNPNARVLIVGQDPGP-GENRTGRPFSGP-----------------------------------SGNNLWKILKRVG-- 44 (152)
T ss_dssp SEGCTESEEEEESSTCH-STHHHSSSSGSH-----------------------------------HHHHHHHHHHHHH--
T ss_pred CCCCCCCEEEEeCCCCh-hHHHhCCCceec-----------------------------------chhhhhhhhhhhh--
Confidence 56779999999999999 548999999875 3456777665542
Q ss_pred chhhhhhhchhhccccccccccCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHhhcCceEEEEechHHHHHHHHHHH---
Q psy9259 190 KAADFFKHAYVHNYFPLAFVSKTATNITPAELKNKTTIEKLNSICDKSLSDIVKHLGIETVIAIGKFAETRAEKALK--- 266 (489)
Q Consensus 190 ~~~~F~~~~fv~n~cPL~f~~~~g~n~tp~~l~~~~~~~~l~~~c~~~L~~~i~~l~~~~vv~vG~~a~~~~~~~~~--- 266 (489)
-.=+++++.|+++- ..+.+...+..++ ..|...|.++|+.++|++||++|+.|.+.+....+
T Consensus 45 ---l~~~~v~~tn~~~~--~~~~~~~~~~~e~----------~~~~~~l~~~l~~~~p~iii~lG~~a~~~~~~~~~~~~ 109 (152)
T PF03167_consen 45 ---LAPEDVYITNLVKC--PPPPNNKPSKSEI----------KECEPFLEEELEIIKPKIIICLGKEAFKALLRLSKKKN 109 (152)
T ss_dssp ---HHCTTEEEEESSSS--CSSEETTBTTTTT----------TCSHHHHHHHHHHHSSSEEEEESHHHHHHHHGSTTCSC
T ss_pred ---hhhhhhheeccccc--ccccccCCCHHHH----------HhhhhhHHHHHHhcCCCEEEEEchHHHHHHHhcccccc
Confidence 12234777777766 1111223333333 33457999999999999999999999988775421
Q ss_pred ---h--cccccceEeeecCCCCCCCCCCchhhHHHHHHHHhc
Q psy9259 267 ---S--NRIFTVKVTSISHPSPRNPASNKNWVENTTKKLKDL 303 (489)
Q Consensus 267 ---~--~~~~~v~V~~L~HPSprnp~anr~W~E~a~~aLeEA 303 (489)
. ....++.+++++|||+++...++.|.+...+.++++
T Consensus 110 ~~~~~~~~~~~~~~~~~~hPS~~~~~~~~~~~~~~~~~~~~L 151 (152)
T PF03167_consen 110 IQKVRIFKFGGVRVFPLPHPSPLNRNPRRKRPEMFQEAWEDL 151 (152)
T ss_dssp HHHHCEEETTTSEEEEECESSTTHHTTTTTTHHHHHHHHHHH
T ss_pred ccceeeeccCCceEEEeCCcHHHHhccccCChHHHHHHhhhc
Confidence 0 123358999999999998776667888888888764
No 20
>KOG3127|consensus
Probab=99.06 E-value=3e-10 Score=109.79 Aligned_cols=97 Identities=18% Similarity=0.214 Sum_probs=71.7
Q ss_pred hhhHHHHHHHHhcCccccccccccccccCCCCCCCeEEEE-E--CCcEEEEeeCCCCCCC--------------------
Q psy9259 291 NWVENTTKKLKDLGVLHYFTSESQNIPNHEHCNHRTLGFT-V--DERSKTRGMNEVNATK-------------------- 347 (489)
Q Consensus 291 ~W~E~a~~aLeEAgvL~~L~~ea~evP~~s~C~~~~VGaV-i--dG~IIa~G~N~~~~~~-------------------- 347 (489)
.|.++.++...-+ ++. |.|....|||+ + ++.||+.|||..+...
T Consensus 65 swd~yFM~iA~Ls-------A~R------SkDpntqVGaCiv~~~n~iVg~GYNgfP~gc~~~vfp~~~~~~~~~~~~k~ 131 (230)
T KOG3127|consen 65 SWDDYFMAIAFLS-------AKR------SKDPNTQVGACIVDRENRIVGTGYNGFPRGCSDDVFPWCKAALSTNLDLKY 131 (230)
T ss_pred cHHHHHHHHHHHH-------HHh------ccCcccceeeEEEcCCCEEEEeccCCCcCCCCCCCCcccccccccCCCcce
Confidence 3888776643333 222 33334678964 3 7999999999876431
Q ss_pred CCchHHHHHHHHHHHHHCCCcccccccceeeeeccchhhhhhhhhhhcccCcEEEEecCCChhhHHHHHHcCCCEEEEEe
Q psy9259 348 NATRHAEMVCIDHIVRQYPSTYRRVFESITVIVNVEPCIMCMAALLRVFESITVIVNVEPCIMCMAALLSLNIRTIVFAC 427 (489)
Q Consensus 348 dpt~HAE~~AI~~a~~~l~~~~r~~~~s~~l~~~~ep~~l~~~~~~~~l~g~tLYvTlEPC~MCa~AIi~sgIkrVVyg~ 427 (489)
--+-|||++||...... ...+|+||||+=||--|+..|+++||+.|||+.
T Consensus 132 ~yv~HAE~NAi~~~~~~------------------------------~~~~~~lYvtl~PC~~Ca~liiq~GIkeV~~~~ 181 (230)
T KOG3127|consen 132 CYVVHAEENAILNKGRE------------------------------RVGGCSLYVTLCPCNECAKLIIQAGIKEVYYSS 181 (230)
T ss_pred EEEeehHHHHHHHhCcc------------------------------ccCCceEEEeecchHHHHHHHHHhhhhheeecc
Confidence 01349999999776532 256799999999999999999999999999999
Q ss_pred eCC
Q psy9259 428 SND 430 (489)
Q Consensus 428 ~d~ 430 (489)
.+.
T Consensus 182 ~~~ 184 (230)
T KOG3127|consen 182 SYY 184 (230)
T ss_pred ccc
Confidence 763
No 21
>TIGR00758 UDG_fam4 uracil-DNA glycosylase, family 4. This well-conserved family of proteins is about 200 residues in length and homologous to the N-terminus of the DNA polymerase of phage SPO1 of Bacillus subtilis. The member from Thermus thermophilus HB8 is known to act as uracil-DNA glycosylase, an enzyme of DNA base excision repair. Its appearance as a domain of phage DNA polymerases could be consistent with uracil-DNA glycosylase activity.
Probab=99.02 E-value=8.4e-10 Score=104.05 Aligned_cols=132 Identities=23% Similarity=0.338 Sum_probs=87.0
Q ss_pred HhcCCCcEEEEeecCCCccccccCcccCChhhhhhhhcccCCCCCCcccCCCCCcCCCCCCccccchhHHHHHHHHhhCC
Q psy9259 110 YCNSKKKILFLGMNPGPWGMVQCGIPFGEVKAVKGFLNIEGKVNQPEKFHKDRPIKGLDCPRSEISGKRLWELASQLSDG 189 (489)
Q Consensus 110 y~~~~~rvl~lGmnPGp~Gm~qTGvPFgd~~~vr~wlgi~~~v~~p~~ehp~rpv~g~~c~~~evSg~r~w~~~~~~~~g 189 (489)
+++..++|+|||.+||... ..+|+||.+.+ |..|+..+. .. |
T Consensus 17 ~G~~~A~im~VgeaPg~~e-~~~g~pf~g~s-----------------------------------G~~L~~~l~-~~-g 58 (173)
T TIGR00758 17 DGNPDANIMFVGEAPGREE-DRKGRPFVGRA-----------------------------------GKLLDEMLA-AI-G 58 (173)
T ss_pred CCCCCCCEEEEeCCCCccc-cccCCCCcChH-----------------------------------HHHHHHHHH-Hc-C
Confidence 6677899999999999976 88999998755 333333332 23 2
Q ss_pred -chhhhhhhchhhccccccccccCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHhhcCceEEEEechHHHHHHHHH---H
Q psy9259 190 -KAADFFKHAYVHNYFPLAFVSKTATNITPAELKNKTTIEKLNSICDKSLSDIVKHLGIETVIAIGKFAETRAEKA---L 265 (489)
Q Consensus 190 -~~~~F~~~~fv~n~cPL~f~~~~g~n~tp~~l~~~~~~~~l~~~c~~~L~~~i~~l~~~~vv~vG~~a~~~~~~~---~ 265 (489)
+++ ++|+.|.+ .|++. .|.+ +. .+++. .|.++|.++|++++|++||++|+.|.+.+... +
T Consensus 59 l~~~----~vy~t~~~---kc~P~-~~r~-----P~--~~Ei~-~c~~~l~~eI~~v~P~~Iv~lG~~a~~~ll~~~~~~ 122 (173)
T TIGR00758 59 LSRE----NVYITNVV---KCRPP-NNRD-----PT--PEEVE-ACAPYLVKQIELIRPKVIICLGRTAAQSILGKNDGI 122 (173)
T ss_pred CCcc----cEEEeccc---cccCC-CCCC-----cC--HHHHH-HHHHHHHHHHHhcCCCEEEEECHHHHHHHHccccch
Confidence 222 44555443 34444 2322 22 44444 57899999999999999999999999877532 1
Q ss_pred -Hhcc----c----ccceEeeecCCCC--CCCCCCch-hhHH
Q psy9259 266 -KSNR----I----FTVKVTSISHPSP--RNPASNKN-WVEN 295 (489)
Q Consensus 266 -~~~~----~----~~v~V~~L~HPSp--rnp~anr~-W~E~ 295 (489)
+..| . ..+++++++|||+ ++|...+. |.+.
T Consensus 123 ~~~rG~~~~~~~~~~~~~~~pt~HPs~llrnp~~k~~~~~dl 164 (173)
T TIGR00758 123 TKIRGRVFEYRYIGTKIKITATYHPAALLRNPQLRRELEEDF 164 (173)
T ss_pred hhhCCcEEEecCCCCceEEEEECCHHHHhhChhhHHHHHHHH
Confidence 1111 1 1258999999999 66664443 6554
No 22
>PF14439 Bd3614-deam: Bd3614-like deaminase
Probab=98.50 E-value=4.2e-07 Score=80.45 Aligned_cols=98 Identities=16% Similarity=0.086 Sum_probs=63.2
Q ss_pred EEEEE--CCcEEEEeeCCCCCCCCCchHHHHHHHHHHHHHCCCcccccccceeeeeccchhhhhhhhhhhcccCcEEEEe
Q psy9259 327 LGFTV--DERSKTRGMNEVNATKNATRHAEMVCIDHIVRQYPSTYRRVFESITVIVNVEPCIMCMAALLRVFESITVIVN 404 (489)
Q Consensus 327 VGaVi--dG~IIa~G~N~~~~~~dpt~HAE~~AI~~a~~~l~~~~r~~~~s~~l~~~~ep~~l~~~~~~~~l~g~tLYvT 404 (489)
|.+++ +|++++.+.|.. ..|.+-|||++.+.-.....-... ......+.+ .|.-- -++..-+..|++||||
T Consensus 11 vA~lv~~~G~l~daa~NtN--a~N~~LHAE~NLl~p~~~~~~~~~---~~~~d~~~~-~~g~g-~~~~~~l~~ga~l~vT 83 (136)
T PF14439_consen 11 VAALVSPDGELVDAAVNTN--ADNKMLHAEWNLLMPWLWREWVDS---PTDDDEIGN-RPGDG-PEERRPLPPGARLLVT 83 (136)
T ss_pred eEEEECCCCcEEEeeeccC--CccceeehhhhhhhHHHHhhcccC---CCccccccc-CCCcc-hhhcCcCCCCcEEEEe
Confidence 34555 799999999964 468899999999877654431100 000000000 00000 0011223579999999
Q ss_pred cCCChhhHHHHHHcCC-------CEEEEEeeCCc
Q psy9259 405 VEPCIMCMAALLSLNI-------RTIVFACSNDR 431 (489)
Q Consensus 405 lEPC~MCa~AIi~sgI-------krVVyg~~d~~ 431 (489)
+.||-||++.+.++.- .+|||+..++-
T Consensus 84 lqcCkMCAalv~a~~d~pg~~~~~~vvY~~ed~G 117 (136)
T PF14439_consen 84 LQCCKMCAALVCAASDRPGRRVPIDVVYLNEDPG 117 (136)
T ss_pred chhHHHHHHHHHHHhhCcCCccceEEEEecCCCC
Confidence 9999999999999876 78999987764
No 23
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=98.46 E-value=3e-07 Score=96.36 Aligned_cols=84 Identities=13% Similarity=0.133 Sum_probs=64.7
Q ss_pred ccCcEEEEecCCChhhHHHHHHcCCCEEEEEeeCCcccccccC---Cc-ccCCCeEEEecCCCCCCcHHHHHHHHHHhhh
Q psy9259 396 FESITVIVNVEPCIMCMAALLSLNIRTIVFACSNDRFGYNVLG---SD-EKTNYIEIVENTDDNTPKDDAVIQNIKVNSA 471 (489)
Q Consensus 396 l~g~tLYvTlEPC~MCa~AIi~sgIkrVVyg~~d~~~Gg~il~---~~-~~~~~ieV~~gv~~~~~~~ee~~~Ll~~F~~ 471 (489)
..|.++|+|+|||.-|+.+|+.+||+|||+++ |++..|..+. .+ -..++|+| .|+ +++||..+.+.|++
T Consensus 43 i~g~~i~~s~~p~~~cad~ii~~gi~rVVi~~-D~d~~G~~~~~~~~~~L~~aGi~V-~~~-----l~~e~~~l~~~~~~ 115 (360)
T PRK14719 43 INANFITVSNTPVFQIADDLIAENISEVILLT-DFDRAGRVYAKNIMEEFQSRGIKV-NNL-----IRKEIIKYSRGDLK 115 (360)
T ss_pred CCCcEEEEeCCchHHHHHHHHHcCCCEEEEEE-CCCCCCCccchHHHHHHHHCCCEE-Eee-----hHHHHHHHhHHhhh
Confidence 45889999999999999999999999999999 6664322211 00 11378999 456 79999999998776
Q ss_pred h-------cC-----------CCCCcccccccc
Q psy9259 472 I-------TN-----------PNTPIEKPTDGI 486 (489)
Q Consensus 472 ~-------~n-----------p~~P~~k~k~~~ 486 (489)
+ .+ -.+||...|.|+
T Consensus 116 ~ie~~~~~~~~~~~~~~~~~~~~rP~V~lK~A~ 148 (360)
T PRK14719 116 DIESLYPYISRRININSDLSDIMLPYVISNVGM 148 (360)
T ss_pred cchhhhhhheeccccccccccCCCCeEEEEEEE
Confidence 6 44 468999888775
No 24
>TIGR01354 cyt_deam_tetra cytidine deaminase, homotetrameric. This small, homotetrameric zinc metalloprotein is found in humans and most bacteria. A related, homodimeric form with a much larger subunit is found in E. coli and in Arabidopsis. Both types may act on deoxycytidine as well as cytidine.
Probab=98.15 E-value=1e-05 Score=72.94 Aligned_cols=67 Identities=30% Similarity=0.324 Sum_probs=52.6
Q ss_pred CeEEEEE---CCcEEEEeeCCCCCCCCCchHHHHHHHHHHHHHCCCcccccccceeeeeccchhhhhhhhhhhcccCcEE
Q psy9259 325 RTLGFTV---DERSKTRGMNEVNATKNATRHAEMVCIDHIVRQYPSTYRRVFESITVIVNVEPCIMCMAALLRVFESITV 401 (489)
Q Consensus 325 ~~VGaVi---dG~IIa~G~N~~~~~~dpt~HAE~~AI~~a~~~l~~~~r~~~~s~~l~~~~ep~~l~~~~~~~~l~g~tL 401 (489)
.||||++ ||+|+. |.|..+...+++.|||+.||.++...... .++...+
T Consensus 21 ~~vgAa~~~~~G~i~~-G~n~e~~~~~~s~~AE~~Ai~~a~~~g~~---------------------------~i~~i~v 72 (127)
T TIGR01354 21 FKVGAALLTKDGRIFT-GVNVENASYPLTICAERSAIGKAISAGYR---------------------------KFVAIAV 72 (127)
T ss_pred CeEEEEEEeCCCCEEE-EEeecccCCCCCcCHHHHHHHHHHHcCCC---------------------------CeEEEEE
Confidence 4789865 799998 99999888999999999999999875221 1233333
Q ss_pred EE----ecCCChhhHHHHHHcC
Q psy9259 402 IV----NVEPCIMCMAALLSLN 419 (489)
Q Consensus 402 Yv----TlEPC~MCa~AIi~sg 419 (489)
+. +..||.||-..|.+.+
T Consensus 73 v~~~~~~~sPCG~Crq~l~e~~ 94 (127)
T TIGR01354 73 ADSADDPVSPCGACRQVLAEFA 94 (127)
T ss_pred EeCCCCCcCccHHHHHHHHHhC
Confidence 33 5789999999999986
No 25
>PRK10201 G/U mismatch-specific DNA glycosylase; Provisional
Probab=97.31 E-value=0.00091 Score=63.40 Aligned_cols=136 Identities=18% Similarity=0.240 Sum_probs=77.9
Q ss_pred HhcCCCcEEEEeecCCCccccccCcccCChhhhhhhhcccCCCCCCcccCCCCCcCCCCCCccccchhHHHHHHHHhhCC
Q psy9259 110 YCNSKKKILFLGMNPGPWGMVQCGIPFGEVKAVKGFLNIEGKVNQPEKFHKDRPIKGLDCPRSEISGKRLWELASQLSDG 189 (489)
Q Consensus 110 y~~~~~rvl~lGmnPGp~Gm~qTGvPFgd~~~vr~wlgi~~~v~~p~~ehp~rpv~g~~c~~~evSg~r~w~~~~~~~~g 189 (489)
+.+..-||||||.|||.+- .++|.+|..+.- |||.++-+ ++=
T Consensus 5 ~l~~~~~vL~~G~nPg~~S-~~~g~~ya~p~N------------------------------------~FW~~l~~-~g~ 46 (168)
T PRK10201 5 ILAPGLRVVFCGINPGLSS-AHTGFPFAHPAN------------------------------------RFWKVIHQ-AGF 46 (168)
T ss_pred ccCCCCeEEEEEeCcCHHH-HhhCCCcCCCCC------------------------------------chhHHHHH-cCC
Confidence 3456789999999999998 999999987741 44444433 201
Q ss_pred chhhh--hh-------hchhhccccccccccCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHhhcCceEEEEechHHHHH
Q psy9259 190 KAADF--FK-------HAYVHNYFPLAFVSKTATNITPAELKNKTTIEKLNSICDKSLSDIVKHLGIETVIAIGKFAETR 260 (489)
Q Consensus 190 ~~~~F--~~-------~~fv~n~cPL~f~~~~g~n~tp~~l~~~~~~~~l~~~c~~~L~~~i~~l~~~~vv~vG~~a~~~ 260 (489)
++... -+ .+-+.|++ -+++ . .-.||. ++++.+ +...|.+.|+..+|++|..+|+-|.+.
T Consensus 47 ~~~~~~~~~~~~L~~~giGltdvv----~Rpt-~--~aseL~----~~E~~~-g~~~L~~~i~~~~P~~V~f~Gk~a~~~ 114 (168)
T PRK10201 47 TDRQLKPEEAQHLLDTRCGVTKLV----DRPT-V--QANEVS----KQELRS-GGRKLIEKIEDYQPQALAVLGKQAYEQ 114 (168)
T ss_pred CcccCCHHHHHHHHHcCcceeeee----ecCC-c--ChhhcC----HHHHHh-hHHHHHHHHHHhCCCEEEEECHHHHHH
Confidence 11000 01 11222332 1111 0 123332 334433 336788888888999999999988754
Q ss_pred HHHHH-Hhccc-----ccceEeeecCCCCCCCCCCchhhHHHHH
Q psy9259 261 AEKAL-KSNRI-----FTVKVTSISHPSPRNPASNKNWVENTTK 298 (489)
Q Consensus 261 ~~~~~-~~~~~-----~~v~V~~L~HPSprnp~anr~W~E~a~~ 298 (489)
+..-- -.++. .+..+.++|.||+.+. ..+++++..
T Consensus 115 ~~~~~~~~~G~q~~~~~~~~v~vlPspSgln~---~~~~~~~~~ 155 (168)
T PRK10201 115 GFSQRGAQWGKQTLTIGSTQVWVLPNPSGLNR---ASLEKLVEA 155 (168)
T ss_pred HhCCCccccccCCccCCCceEEEcCCCccccc---cCHHHHHHH
Confidence 33210 01221 2356899999999962 246665443
No 26
>TIGR00584 mug mismatch-specific thymine-DNA glycosylate (mug). All proteins in this family for whcih functions are known are G-T or G-U mismatch glycosylases that function in base excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Used 2pf model.
Probab=96.75 E-value=0.0078 Score=62.11 Aligned_cols=137 Identities=12% Similarity=0.125 Sum_probs=79.5
Q ss_pred HHHHhcCCCcEEEEeecCCCccccccCcccCChhhhhhhhcccCCCCCCcccCCCCCcCCCCCCccccchhHHHHHHHHh
Q psy9259 107 VYKYCNSKKKILFLGMNPGPWGMVQCGIPFGEVKAVKGFLNIEGKVNQPEKFHKDRPIKGLDCPRSEISGKRLWELASQL 186 (489)
Q Consensus 107 ~~ky~~~~~rvl~lGmnPGp~Gm~qTGvPFgd~~~vr~wlgi~~~v~~p~~ehp~rpv~g~~c~~~evSg~r~w~~~~~~ 186 (489)
+.-..+..-+|||||+|||.+. +++|-.|..+.- |||.++-..
T Consensus 123 LPdil~p~LrVLflGiNPGl~S-a~~GhyYAhP~N------------------------------------rFW~lL~~s 165 (328)
T TIGR00584 123 LPDILTFNLDIVIIGINPGLMA-AYKGHHYPGPGN------------------------------------HFWKCLFMS 165 (328)
T ss_pred CCcccCCCCcEEEEeECcCHHH-HhcCCCCCCCCC------------------------------------chHHHHHHh
Confidence 3344567899999999999998 888988876541 677666554
Q ss_pred hCCchhhhhhhchh--hccccccccccCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHhhcCceEEEEechHHHHHHHHH
Q psy9259 187 SDGKAADFFKHAYV--HNYFPLAFVSKTATNITPAELKNKTTIEKLNSICDKSLSDIVKHLGIETVIAIGKFAETRAEKA 264 (489)
Q Consensus 187 ~~g~~~~F~~~~fv--~n~cPL~f~~~~g~n~tp~~l~~~~~~~~l~~~c~~~L~~~i~~l~~~~vv~vG~~a~~~~~~~ 264 (489)
. .++...-..-.. ..-.=+||.+-- .-.|..+- .. ..+++.+ ....|.+.|+..+|++|..+|+.|.+-+.+.
T Consensus 166 G-lt~~~l~y~ed~~LL~~~GIGLTnlv-~RpTs~ds-eL-s~eEl~~-G~~~L~~kI~r~rPrvVaF~GK~aYe~~~k~ 240 (328)
T TIGR00584 166 G-LSEVQLNHMDDHTLPGKYGIGFTNMV-ERTTPGSK-DL-SSKEFRE-GGRILVQKLQKYQPRIAVFNGKCIYEIFSKE 240 (328)
T ss_pred c-CCCcCCCHHHHHHHHHHcCeeeeEEe-ecCCcchh-hc-CHHHHHh-hHHHHHHHHHHhCCcEEEEECHHHHHHHHHH
Confidence 4 444321111111 101122332211 11222221 11 2334443 3367888998899999999999988655322
Q ss_pred H-------Hhccc-----cc--ceEeeecCCCCCC
Q psy9259 265 L-------KSNRI-----FT--VKVTSISHPSPRN 285 (489)
Q Consensus 265 ~-------~~~~~-----~~--v~V~~L~HPSprn 285 (489)
. -.+|. .+ ..|.++|-||.++
T Consensus 241 ~~G~k~k~~~~G~Q~~~l~~~~t~vwVlPspSGLn 275 (328)
T TIGR00584 241 VFGVKVKNLEFGLQPHKIPDTETLCYVMPSSSARC 275 (328)
T ss_pred hhcCccccCcccCCCcccCCCcceEEEeCCCchhh
Confidence 1 12222 12 3399999999985
No 27
>PRK12411 cytidine deaminase; Provisional
Probab=95.51 E-value=0.14 Score=46.76 Aligned_cols=39 Identities=26% Similarity=0.261 Sum_probs=31.3
Q ss_pred CeEEEEE---CCcEEEEeeCCCCCCCCCchHHHHHHHHHHHHH
Q psy9259 325 RTLGFTV---DERSKTRGMNEVNATKNATRHAEMVCIDHIVRQ 364 (489)
Q Consensus 325 ~~VGaVi---dG~IIa~G~N~~~~~~dpt~HAE~~AI~~a~~~ 364 (489)
.+|||.+ ||+|+ .|.|-.+.....+-|||..||-++...
T Consensus 24 ~~VgAa~~t~~G~i~-~G~nvEn~s~~~s~CAE~~Ai~~av~~ 65 (132)
T PRK12411 24 FQVGAALLTQDGKVY-RGCNVENASYGLCNCAERTALFKAVSE 65 (132)
T ss_pred CceEEEEEeCCCCEE-EEEEeecCCCCcCcCHHHHHHHHHHHC
Confidence 4688864 89988 888976666677899999999998754
No 28
>PRK06848 hypothetical protein; Validated
Probab=95.26 E-value=0.1 Score=48.05 Aligned_cols=39 Identities=15% Similarity=0.167 Sum_probs=31.8
Q ss_pred CeEEEEE---CCcEEEEeeCCCCCCCCCchHHHHHHHHHHHHH
Q psy9259 325 RTLGFTV---DERSKTRGMNEVNATKNATRHAEMVCIDHIVRQ 364 (489)
Q Consensus 325 ~~VGaVi---dG~IIa~G~N~~~~~~dpt~HAE~~AI~~a~~~ 364 (489)
.+|||.+ ||+|+ +|.|-.+.+...+-|||..||-++...
T Consensus 27 f~VgAa~l~~~G~i~-~G~NvEnas~~~tiCAEr~Ai~~av~~ 68 (139)
T PRK06848 27 HHVGAALRTKTGRIY-AAVHLEAYVGRITVCAEAIAIGKAISE 68 (139)
T ss_pred CcEEEEEEeCCCCEE-EEEEeecCCCCcccCHHHHHHHHHHHc
Confidence 5789864 88887 899977666677899999999998764
No 29
>PRK05578 cytidine deaminase; Validated
Probab=95.03 E-value=0.23 Score=45.26 Aligned_cols=39 Identities=28% Similarity=0.256 Sum_probs=30.4
Q ss_pred CeEEEEE---CCcEEEEeeCCCCCCCCCchHHHHHHHHHHHHH
Q psy9259 325 RTLGFTV---DERSKTRGMNEVNATKNATRHAEMVCIDHIVRQ 364 (489)
Q Consensus 325 ~~VGaVi---dG~IIa~G~N~~~~~~dpt~HAE~~AI~~a~~~ 364 (489)
-+|||.+ ||+|. .|.|-.+.....+-|||..||-.+...
T Consensus 24 f~Vgaa~~~~~G~i~-~G~nvEna~~~~~~CAE~~Ai~~av~~ 65 (131)
T PRK05578 24 FPVGAALLTDDGRIY-TGCNIENASYGLTNCAERTAIFKAISE 65 (131)
T ss_pred CceEEEEEeCCCCEE-EEEEeeCccccCCcCHHHHHHHHHHHc
Confidence 4688864 78876 788866666678899999999998754
No 30
>PF14437 MafB19-deam: MafB19-like deaminase
Probab=95.01 E-value=0.2 Score=46.58 Aligned_cols=54 Identities=24% Similarity=0.346 Sum_probs=42.5
Q ss_pred CchHHHHHHHHHHHHHCCCcccccccceeeeeccchhhhhhhhhhhcccCcEEEEecCCChhhHHHHH----HcCCCEEE
Q psy9259 349 ATRHAEMVCIDHIVRQYPSTYRRVFESITVIVNVEPCIMCMAALLRVFESITVIVNVEPCIMCMAALL----SLNIRTIV 424 (489)
Q Consensus 349 pt~HAE~~AI~~a~~~l~~~~r~~~~s~~l~~~~ep~~l~~~~~~~~l~g~tLYvTlEPC~MCa~AIi----~sgIkrVV 424 (489)
...|||+.||.+|..+ |.. .-+..+|||....|..|-+.|. .+|++.+.
T Consensus 79 ~~~HAE~~aiqqA~d~-G~~--------------------------~g~~~tm~Vdr~vC~~C~~~i~~~a~~lGl~~L~ 131 (146)
T PF14437_consen 79 AKAHAEAGAIQQAYDA-GKT--------------------------VGRSMTMYVDRDVCGYCGGDIPSMAEKLGLKSLT 131 (146)
T ss_pred HHHHHHHHHHHHHHHh-cCc--------------------------cCCeEEEEECcccchHHHHHHHHHHHHcCCCeEE
Confidence 3579999999999987 331 1357899999999999987664 57999887
Q ss_pred EEeeC
Q psy9259 425 FACSN 429 (489)
Q Consensus 425 yg~~d 429 (489)
+-..+
T Consensus 132 I~~~~ 136 (146)
T PF14437_consen 132 IHEPD 136 (146)
T ss_pred EEecC
Confidence 76654
No 31
>COG0295 Cdd Cytidine deaminase [Nucleotide transport and metabolism]
Probab=94.40 E-value=0.22 Score=45.71 Aligned_cols=75 Identities=25% Similarity=0.342 Sum_probs=52.3
Q ss_pred CeEEEEE---CCcEEEEeeCCCCCCCCCchHHHHHHHHHHHHHCCCcccccccceeeeeccchhhhhhhhhhhcccCcEE
Q psy9259 325 RTLGFTV---DERSKTRGMNEVNATKNATRHAEMVCIDHIVRQYPSTYRRVFESITVIVNVEPCIMCMAALLRVFESITV 401 (489)
Q Consensus 325 ~~VGaVi---dG~IIa~G~N~~~~~~dpt~HAE~~AI~~a~~~l~~~~r~~~~s~~l~~~~ep~~l~~~~~~~~l~g~tL 401 (489)
-+|||.+ ||+|+ +|.|-.+.+---+.|||-.||-++... +.. .+.-..+
T Consensus 26 F~VGAa~~t~~G~i~-tG~NiEnasy~~t~CAErsAI~~ais~-G~~--------------------------~~~~v~v 77 (134)
T COG0295 26 FKVGAALRTKDGRIY-TGANVENASYGLTVCAERSAIFKAISE-GKR--------------------------KFDAVVV 77 (134)
T ss_pred CcEEEEEEeCCCCEE-EEEeeecccccchhhHHHHHHHHHHHc-CCC--------------------------cEEEEEE
Confidence 5799864 67655 899988877778999999999999876 321 1221222
Q ss_pred EE----ecCCChhhHHHHHHcC-CCEEEEEe
Q psy9259 402 IV----NVEPCIMCMAALLSLN-IRTIVFAC 427 (489)
Q Consensus 402 Yv----TlEPC~MCa~AIi~sg-IkrVVyg~ 427 (489)
|. ..-||.||-.-|.... -...+|-.
T Consensus 78 ~~~~~~~~sPCG~CRQ~i~Ef~~~d~~ii~~ 108 (134)
T COG0295 78 VADTGKPVSPCGACRQVLAEFCGDDTLIILL 108 (134)
T ss_pred EcCCCCCcCCcHHHHHHHHHhcCCCceEEEe
Confidence 22 2679999999999875 44444444
No 32
>TIGR01355 cyt_deam_dimer cytidine deaminase, homodimeric. This homodimeric zinc metalloprotein is found in Arabidopis and some Proteobacteria. A related, homotetrameric form with a much smaller subunit is found most bacteria and in animals. Both types may act on deoxycytidine as well as cytidine.
Probab=94.31 E-value=0.31 Score=50.00 Aligned_cols=65 Identities=23% Similarity=0.272 Sum_probs=47.1
Q ss_pred CeEEEEE---CCcEEEEeeCCC--CCCCCCchHHHHHHHHHHHHHCCCcccccccceeeeeccchhhhhhhhhhhcccCc
Q psy9259 325 RTLGFTV---DERSKTRGMNEV--NATKNATRHAEMVCIDHIVRQYPSTYRRVFESITVIVNVEPCIMCMAALLRVFESI 399 (489)
Q Consensus 325 ~~VGaVi---dG~IIa~G~N~~--~~~~dpt~HAE~~AI~~a~~~l~~~~r~~~~s~~l~~~~ep~~l~~~~~~~~l~g~ 399 (489)
-+|||++ ||+|. .|.|-. +..-..+-|||..||-++... |. + .+ .
T Consensus 43 F~VGAall~~~G~iy-~GvNvE~~nas~~~tiCAEr~Ai~~Av~~-Ge--~------------------------~i--~ 92 (283)
T TIGR01355 43 FNVGAVGRGSSGRFY-LGVNVEFPGLPLHHSIHAEQFLISHLALN-NE--R------------------------GL--N 92 (283)
T ss_pred CeeeEEEEeCCCCEE-EEEEeccCCCCCCccccHHHHHHHHHHHc-CC--C------------------------ce--E
Confidence 5789875 88877 788854 334455789999999988754 21 1 12 3
Q ss_pred EEEEecCCChhhHHHHHHcC
Q psy9259 400 TVIVNVEPCIMCMAALLSLN 419 (489)
Q Consensus 400 tLYvTlEPC~MCa~AIi~sg 419 (489)
.|.++..||.+|-..|.+..
T Consensus 93 ~Iav~~~PCG~CRQ~l~Ef~ 112 (283)
T TIGR01355 93 DLAVSYAPCGHCRQFLNEIR 112 (283)
T ss_pred EEEEEeCCcchhHHHHHHhc
Confidence 45666889999999999873
No 33
>PRK08298 cytidine deaminase; Validated
Probab=93.76 E-value=0.18 Score=46.44 Aligned_cols=38 Identities=8% Similarity=-0.104 Sum_probs=30.7
Q ss_pred eEEEEE---CCcEEEEeeCCCCCCCCCchHHHHHHHHHHHHH
Q psy9259 326 TLGFTV---DERSKTRGMNEVNATKNATRHAEMVCIDHIVRQ 364 (489)
Q Consensus 326 ~VGaVi---dG~IIa~G~N~~~~~~dpt~HAE~~AI~~a~~~ 364 (489)
+|||.+ ||+|+ +|.|-.+.+--.+.-||..||-++...
T Consensus 24 ~VgAAllt~dG~i~-tG~NvEnas~~~t~CAEr~Ai~~av~~ 64 (136)
T PRK08298 24 GGAAAMRVEDGTIL-TSVAPEVINASTELCMETGAICEAHKL 64 (136)
T ss_pred ceeEEEEeCCCCEE-EEEeecCCCCCcchhHHHHHHHHHHHC
Confidence 688764 89988 899977666667889999999988754
No 34
>PLN02402 cytidine deaminase
Probab=93.22 E-value=0.27 Score=50.84 Aligned_cols=65 Identities=20% Similarity=0.221 Sum_probs=46.6
Q ss_pred CeEEEEE---CCcEEEEeeCCCCCCCCC--chHHHHHHHHHHHHHCCCcccccccceeeeeccchhhhhhhhhhhcccCc
Q psy9259 325 RTLGFTV---DERSKTRGMNEVNATKNA--TRHAEMVCIDHIVRQYPSTYRRVFESITVIVNVEPCIMCMAALLRVFESI 399 (489)
Q Consensus 325 ~~VGaVi---dG~IIa~G~N~~~~~~dp--t~HAE~~AI~~a~~~l~~~~r~~~~s~~l~~~~ep~~l~~~~~~~~l~g~ 399 (489)
-+|||++ ||+|. .|.|-.+...-. +-|||..||-++... |. + .++
T Consensus 46 F~VGAa~l~~~G~i~-~GvNVEnasy~l~~tiCAEr~Ai~~av~~-G~--~------------------------~i~-- 95 (303)
T PLN02402 46 YHVGAVGLGSSGRIF-LGVNLEFPGLPLHHSVHAEQFLITNLTLN-AE--P------------------------HLK-- 95 (303)
T ss_pred CeeeEEEEeCCCCEE-EEEeeecCCCCCCCcccHHHHHHHHHHHc-CC--C------------------------ceE--
Confidence 5789875 88876 788865543322 789999999998754 21 1 122
Q ss_pred EEEEecCCChhhHHHHHHcC
Q psy9259 400 TVIVNVEPCIMCMAALLSLN 419 (489)
Q Consensus 400 tLYvTlEPC~MCa~AIi~sg 419 (489)
.|.|+..||.||-..|.+..
T Consensus 96 ~iaV~~sPCG~CRQ~l~Ef~ 115 (303)
T PLN02402 96 YVAVSAAPCGHCRQFFQEIR 115 (303)
T ss_pred EEEEEeCCCcccHHHHHHhc
Confidence 35667789999999999873
No 35
>TIGR00628 ung uracil-DNA glycosylase. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.24 E-value=2.2 Score=42.11 Aligned_cols=82 Identities=11% Similarity=0.039 Sum_probs=47.7
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHHHh-hcCceEEEEechHHHHHHHHHHHhcccccceEeeecCCCCCCCCCCchh--
Q psy9259 216 ITPAELKNKTTIEKLNSICDKSLSDIVK-HLGIETVIAIGKFAETRAEKALKSNRIFTVKVTSISHPSPRNPASNKNW-- 292 (489)
Q Consensus 216 ~tp~~l~~~~~~~~l~~~c~~~L~~~i~-~l~~~~vv~vG~~a~~~~~~~~~~~~~~~v~V~~L~HPSprnp~anr~W-- 292 (489)
+|-.+-++..-...-|+...+.+.+.|. .-++=|.+..|++|++....+- ...-.|+...||||-+. ++++
T Consensus 123 LTV~~g~~~SH~~~GWe~fT~~vI~~l~~~~~~vVf~LWG~~Aq~~~~~i~----~~~h~il~s~HPSPlSa--~~gF~g 196 (212)
T TIGR00628 123 LTVRAGQPGSHSGLGWERFTDAVISRLSERRDGLVFMLWGAHAQKKKSLID----AKKHLVLKSPHPSPLSA--RRGFFG 196 (212)
T ss_pred eEeeCCCCCccccCCHHHHHHHHHHHHHhcCCCeEEEEeCHHHHHHhccCC----CCCeEEEeCCCCCcccc--CCCCCC
Confidence 4444444432333447777777777775 3444566788999887554431 11235888999999752 3333
Q ss_pred ---hHHHHHHHHhc
Q psy9259 293 ---VENTTKKLKDL 303 (489)
Q Consensus 293 ---~E~a~~aLeEA 303 (489)
-.++.+.|.+.
T Consensus 197 s~~Fs~~N~~L~~~ 210 (212)
T TIGR00628 197 CRHFSKANEYLEKH 210 (212)
T ss_pred CCHHHHHHHHHHHc
Confidence 34445555554
No 36
>PLN02182 cytidine deaminase
Probab=91.58 E-value=1.4 Score=46.39 Aligned_cols=68 Identities=18% Similarity=0.286 Sum_probs=45.6
Q ss_pred CeEEEEE---CCcEEEEeeCCCCCCC--CCchHHHHHHHHHHHHHCCCcccccccceeeeeccchhhhhhhhhhhcccCc
Q psy9259 325 RTLGFTV---DERSKTRGMNEVNATK--NATRHAEMVCIDHIVRQYPSTYRRVFESITVIVNVEPCIMCMAALLRVFESI 399 (489)
Q Consensus 325 ~~VGaVi---dG~IIa~G~N~~~~~~--dpt~HAE~~AI~~a~~~l~~~~r~~~~s~~l~~~~ep~~l~~~~~~~~l~g~ 399 (489)
-+|||+. +|+|. .|.|-.+... ..+-|||..||-++... |. +. ++..
T Consensus 66 F~VGAa~l~~sG~iy-~GvNVEnas~pl~~tICAEr~AI~~A~~~-Ge--~~------------------------i~~i 117 (339)
T PLN02182 66 YKVGAVGRASSGRVY-LGVNVDFPGLPLHHSIHAEQFLVTNLALN-SE--KD------------------------LCEL 117 (339)
T ss_pred CeeeEEEEeCCCCEE-EEEEeecCCCccCCccCHHHHHHHHHHHC-CC--Cc------------------------eEEE
Confidence 5789875 88876 7888655432 23789999999998754 21 10 1111
Q ss_pred EEEEe------cCCChhhHHHHHHcCC
Q psy9259 400 TVIVN------VEPCIMCMAALLSLNI 420 (489)
Q Consensus 400 tLYvT------lEPC~MCa~AIi~sgI 420 (489)
.+.+. .-||.+|--.|.+..-
T Consensus 118 aVaV~~~~~~~~sPCG~CRQfm~Ef~~ 144 (339)
T PLN02182 118 AVAISTDGKEFGTPCGHCLQFLMEMSN 144 (339)
T ss_pred EEEEecCCCCCcCCCchhHHHHHHhCC
Confidence 12221 5799999999999853
No 37
>PRK09027 cytidine deaminase; Provisional
Probab=91.31 E-value=0.72 Score=47.63 Aligned_cols=65 Identities=26% Similarity=0.283 Sum_probs=47.0
Q ss_pred CeEEEEE---CCcEEEEeeCCCCC--CCCCchHHHHHHHHHHHHHCCCcccccccceeeeeccchhhhhhhhhhhcccCc
Q psy9259 325 RTLGFTV---DERSKTRGMNEVNA--TKNATRHAEMVCIDHIVRQYPSTYRRVFESITVIVNVEPCIMCMAALLRVFESI 399 (489)
Q Consensus 325 ~~VGaVi---dG~IIa~G~N~~~~--~~dpt~HAE~~AI~~a~~~l~~~~r~~~~s~~l~~~~ep~~l~~~~~~~~l~g~ 399 (489)
-.|||++ +|+|. .|.|-.+. .-..+-|||..||-++... |. + .+ .
T Consensus 71 F~VGAa~~~~sG~iy-~GvNvE~~~~s~~~tiCAEr~Ai~~a~~~-Ge--~------------------------~i--~ 120 (295)
T PRK09027 71 FNVGAIARGVSGNFY-FGANMEFAGAALQQTVHAEQSAISHAWLR-GE--K------------------------AI--A 120 (295)
T ss_pred CcEEEEEEeCCCCEE-EEEeeccCCCCCCCCcCHHHHHHHHHHHC-CC--C------------------------ce--E
Confidence 5789874 88877 88885442 2345789999999998754 21 1 12 3
Q ss_pred EEEEecCCChhhHHHHHHcC
Q psy9259 400 TVIVNVEPCIMCMAALLSLN 419 (489)
Q Consensus 400 tLYvTlEPC~MCa~AIi~sg 419 (489)
.+.|+..||.+|--.|.+..
T Consensus 121 ~I~v~~sPCG~CRQ~l~E~~ 140 (295)
T PRK09027 121 DITVNYTPCGHCRQFMNELN 140 (295)
T ss_pred EEEEEecCchhhHHHHHHhC
Confidence 45666789999999999873
No 38
>PF07799 DUF1643: Protein of unknown function (DUF1643); InterPro: IPR012441 This entry is represented by Bacteriophage D3, Orf41.6. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The members of this family are all sequences found within hypothetical proteins expressed by various bacteria, archaea and phage. The region concerned is approximately 150 residues long.
Probab=91.30 E-value=0.23 Score=44.87 Aligned_cols=90 Identities=20% Similarity=0.394 Sum_probs=61.2
Q ss_pred cCCCcEEEEeecCCCccccccCcccCChhhhhhhhcccCCCCCCcccCCCCCcCCCCCCccccchhHHHHHHHHhhCCch
Q psy9259 112 NSKKKILFLGMNPGPWGMVQCGIPFGEVKAVKGFLNIEGKVNQPEKFHKDRPIKGLDCPRSEISGKRLWELASQLSDGKA 191 (489)
Q Consensus 112 ~~~~rvl~lGmnPGp~Gm~qTGvPFgd~~~vr~wlgi~~~v~~p~~ehp~rpv~g~~c~~~evSg~r~w~~~~~~~~g~~ 191 (489)
.+.+.++||||||..-. ++.++.+++.+.++...-+
T Consensus 10 ~~~~~~~~I~lNPS~A~------~~~~D~T~~~~~~~a~~~g-------------------------------------- 45 (136)
T PF07799_consen 10 SGKPPLLFIGLNPSTAD------AEKDDPTIRRCINFARRWG-------------------------------------- 45 (136)
T ss_pred CCCCEEEEEEeCCCCCC------CcCCCHHHHHHHHHHhhcC--------------------------------------
Confidence 45899999999997654 5777778877766653332
Q ss_pred hhhhhhchhhccccccccccCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHhhcCceEEEEechHHH
Q psy9259 192 ADFFKHAYVHNYFPLAFVSKTATNITPAELKNKTTIEKLNSICDKSLSDIVKHLGIETVIAIGKFAE 258 (489)
Q Consensus 192 ~~F~~~~fv~n~cPL~f~~~~g~n~tp~~l~~~~~~~~l~~~c~~~L~~~i~~l~~~~vv~vG~~a~ 258 (489)
|..+.|.|++|.---+ |.+|+.. .+++..--+.+|++.++.. ..+|+|=|....
T Consensus 46 ---yg~~~i~NLf~~~~t~-------p~~l~~~--~~~~~~~N~~~i~~~~~~~-~~vv~AWG~~~~ 99 (136)
T PF07799_consen 46 ---YGGVIIVNLFPQRSTD-------PKDLKKA--PDPIGPENDEHIREALKEA-DDVVLAWGNHGK 99 (136)
T ss_pred ---CCeEEEEEecccccCC-------HHHHHhc--cCcccHhHHHHHHHHHhcc-CcEEEEeCCCcc
Confidence 5678888888865433 4444433 3444455567888887633 688999998544
No 39
>KOG0833|consensus
Probab=90.14 E-value=3.4 Score=39.53 Aligned_cols=72 Identities=19% Similarity=0.261 Sum_probs=52.0
Q ss_pred CeEEEEE---CCcEEEEeeCCCCCCCCCchHHHHHHHHHHHHHCCCcccccccceeeeeccchhhhhhhhhhhcccCcEE
Q psy9259 325 RTLGFTV---DERSKTRGMNEVNATKNATRHAEMVCIDHIVRQYPSTYRRVFESITVIVNVEPCIMCMAALLRVFESITV 401 (489)
Q Consensus 325 ~~VGaVi---dG~IIa~G~N~~~~~~dpt~HAE~~AI~~a~~~l~~~~r~~~~s~~l~~~~ep~~l~~~~~~~~l~g~tL 401 (489)
-+|||+. +|+|. .|.|-.+..-+++-|||.-||-++.-..-.++ . +..
T Consensus 42 fkVGA~~r~ssGrif-~G~NVEn~~~~~sIcAEr~ai~~l~l~g~~k~---------------------------~-~~a 92 (173)
T KOG0833|consen 42 FKVGAAGRASSGRIF-LGVNVENASYHHSICAERFAIANLALNGERKF---------------------------R-AIA 92 (173)
T ss_pred CceEEEEEecCCcEE-EeeeecccCCCCcccHHHHHHHHHHHcCcccc---------------------------e-EEE
Confidence 5789984 78876 78898777778899999999999986522211 1 112
Q ss_pred EE------ecCCChhhHHHHHHcCCCEEEE
Q psy9259 402 IV------NVEPCIMCMAALLSLNIRTIVF 425 (489)
Q Consensus 402 Yv------TlEPC~MCa~AIi~sgIkrVVy 425 (489)
.+ -..||.-|---|...+-...++
T Consensus 93 V~~~~~~~f~tPCG~CRQfl~Ef~~~~~l~ 122 (173)
T KOG0833|consen 93 VVAYEDGDFTTPCGVCRQFLREFGNASLLL 122 (173)
T ss_pred EEecCCCCcCCCcHHHHHHHHHHhhcceee
Confidence 22 2689999999999988763333
No 40
>PRK05254 uracil-DNA glycosylase; Provisional
Probab=88.72 E-value=7.6 Score=38.70 Aligned_cols=161 Identities=16% Similarity=0.139 Sum_probs=86.1
Q ss_pred HHHHHHHHHHhcC-CCcEEEEeecCCCccccccCcccCChhhhhhhhcccCCCCCCcccCCCCCcCCCCCCccccchhHH
Q psy9259 101 ELHSKYVYKYCNS-KKKILFLGMNPGPWGMVQCGIPFGEVKAVKGFLNIEGKVNQPEKFHKDRPIKGLDCPRSEISGKRL 179 (489)
Q Consensus 101 ~~h~~y~~ky~~~-~~rvl~lGmnPGp~Gm~qTGvPFgd~~~vr~wlgi~~~v~~p~~ehp~rpv~g~~c~~~evSg~r~ 179 (489)
++.++| +|+.- ..||+|||+=|=+.-...+|..|.....++ ++ .| |
T Consensus 46 ~iF~a~--~~~p~~~vKVVIlGQDPY~~~gqA~GLaFSv~~~~~-------------------------~P---pS---L 92 (224)
T PRK05254 46 DIFRAF--NLTPFDDVKVVILGQDPYHGPGQAHGLSFSVPPGVP-------------------------IP---PS---L 92 (224)
T ss_pred HHHHHH--hcCCHhHeEEEEEecCCCCCCCCcceEeeeCCCCCC-------------------------CC---cc---H
Confidence 355555 45443 789999999999987789999998543110 01 11 2
Q ss_pred HHHHHHhhCCchhhhhhhchhhc-cccccccccCC-----CCCCCCCCCChhhHHHHHHHHHHHHHHHHhhc-CceEEEE
Q psy9259 180 WELASQLSDGKAADFFKHAYVHN-YFPLAFVSKTA-----TNITPAELKNKTTIEKLNSICDKSLSDIVKHL-GIETVIA 252 (489)
Q Consensus 180 w~~~~~~~~g~~~~F~~~~fv~n-~cPL~f~~~~g-----~n~tp~~l~~~~~~~~l~~~c~~~L~~~i~~l-~~~~vv~ 252 (489)
-..|+++. .+- . +-..+ -| |--....| .-+|-.+-++......-|+...+.+.+.|..- ++=|.+.
T Consensus 93 ~NI~kel~-~d~----~-~~~p~~g~-L~~Wa~QGVLLLNt~LTv~~g~~~SH~~~GWe~ft~~vi~~l~~~~~~iVf~L 165 (224)
T PRK05254 93 RNIFKELE-DDL----G-FPIPNHGD-LTSWAEQGVLLLNTVLTVEAGQANSHAGKGWETFTDAVIKALNERREPVVFIL 165 (224)
T ss_pred HHHHHHHH-Hhc----C-CCCCCCCC-hHHHHhCCEEeeecceEeeCCCCCccccCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence 23333333 000 0 00000 00 00001112 23444444444223344777777777777644 4456677
Q ss_pred echHHHHHHHHHHHhcccccceEeeecCCCCCCC---CCCchhhHHHHHHHHhcCc
Q psy9259 253 IGKFAETRAEKALKSNRIFTVKVTSISHPSPRNP---ASNKNWVENTTKKLKDLGV 305 (489)
Q Consensus 253 vG~~a~~~~~~~~~~~~~~~v~V~~L~HPSprnp---~anr~W~E~a~~aLeEAgv 305 (489)
.|++|++....+- . . .-.|+...||||-+. --+.+--.++...|.+.+.
T Consensus 166 WG~~Aq~~~~~i~-~-~--~h~vl~s~HPSPlSa~~gF~gs~~F~~~N~~L~~~~~ 217 (224)
T PRK05254 166 WGSHAQKKKALID-N-S--KHLILESPHPSPLSAHRGFFGSKHFSKANALLKQHGK 217 (224)
T ss_pred eCHHHHhhhhcCC-C-C--CceEEecCCCCcccccCCCCCCCHHHHHHHHHHHcCC
Confidence 7999887554331 1 1 135899999999652 1122345666677777664
No 41
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases
Probab=82.22 E-value=2 Score=39.39 Aligned_cols=48 Identities=13% Similarity=0.300 Sum_probs=36.6
Q ss_pred CchHHHHHHHHHHHHHCCCcccccccceeeeeccchhhhhhhhhhhcccCcEEEEecCCChhhHHHHHHcC
Q psy9259 349 ATRHAEMVCIDHIVRQYPSTYRRVFESITVIVNVEPCIMCMAALLRVFESITVIVNVEPCIMCMAALLSLN 419 (489)
Q Consensus 349 pt~HAE~~AI~~a~~~l~~~~r~~~~s~~l~~~~ep~~l~~~~~~~~l~g~tLYvTlEPC~MCa~AIi~sg 419 (489)
....+|...|+..+++++.+... .--..+||+.+.||..|...|.+..
T Consensus 72 R~~DsE~KiL~~ia~~l~~~~~~-----------------------~~G~i~l~te~~pC~SC~~vi~qF~ 119 (133)
T PF14424_consen 72 RNNDSEYKILEDIAKKLGDNPDP-----------------------SGGTIDLFTELPPCESCSNVIEQFK 119 (133)
T ss_pred ccccHHHHHHHHHHHHhcccccc-----------------------CCceEEEEecCCcChhHHHHHHHHH
Confidence 34589999999999988653210 0025789999999999999998864
No 42
>PF14431 YwqJ-deaminase: YwqJ-like deaminase
Probab=81.61 E-value=1.7 Score=39.21 Aligned_cols=17 Identities=29% Similarity=0.626 Sum_probs=14.8
Q ss_pred ecCCChhhHHHHHHcCC
Q psy9259 404 NVEPCIMCMAALLSLNI 420 (489)
Q Consensus 404 TlEPC~MCa~AIi~sgI 420 (489)
-..||..|+..+.+.||
T Consensus 109 ~~~pC~nC~~~l~~~~v 125 (125)
T PF14431_consen 109 YAPPCRNCAALLKHFGV 125 (125)
T ss_pred CCCCCchHHHHHhhcCC
Confidence 35799999999999886
No 43
>PHA03200 uracil DNA glycosylase; Provisional
Probab=80.08 E-value=15 Score=37.43 Aligned_cols=86 Identities=13% Similarity=0.022 Sum_probs=51.2
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHHHh-hcCceEEEEechHHHHHHHHHHHhcccccceEeeecCCCCCCCCCCchh--
Q psy9259 216 ITPAELKNKTTIEKLNSICDKSLSDIVK-HLGIETVIAIGKFAETRAEKALKSNRIFTVKVTSISHPSPRNPASNKNW-- 292 (489)
Q Consensus 216 ~tp~~l~~~~~~~~l~~~c~~~L~~~i~-~l~~~~vv~vG~~a~~~~~~~~~~~~~~~v~V~~L~HPSprnp~anr~W-- 292 (489)
+|-.+-++..-+..=|+...+.+.+.|. .-++-|.+.-|++|++....+- .. .-.|+...||||-+..+++++
T Consensus 154 LTV~~gk~~SH~~~GWe~FTd~vI~~l~~~~~~vVFlLWG~~Aq~k~~lI~-~~---~h~IL~s~HPSPlS~~a~rgFfg 229 (255)
T PHA03200 154 FTVVHGQPGSHEALGWQTLSDRVISRLSEKREHLVFMLWGAQAQKLEYLID-SR---KHLILKSAHPSPRVKGARTPFIG 229 (255)
T ss_pred eeeeCCCcCccccCCHHHHHHHHHHHHHccCCCeEEEEcCHHHHHHhhcCC-CC---CcEEEeCCCCCCCCcccCCCCCC
Confidence 4444444432233336655566666665 4455677788999997554331 11 125899999999974445543
Q ss_pred ---hHHHHHHHHhcCc
Q psy9259 293 ---VENTTKKLKDLGV 305 (489)
Q Consensus 293 ---~E~a~~aLeEAgv 305 (489)
-.++.+.|.+.+.
T Consensus 230 s~hFsk~N~~L~~~g~ 245 (255)
T PHA03200 230 NNHFVLANEYLSTHGK 245 (255)
T ss_pred CCHHHHHHHHHHHcCC
Confidence 3566667777663
No 44
>PRK09027 cytidine deaminase; Provisional
Probab=80.03 E-value=5.9 Score=41.07 Aligned_cols=73 Identities=14% Similarity=0.119 Sum_probs=51.2
Q ss_pred CeEEEEE---CCcEEEEeeCCCCCCCCCchHHHHHHHHHHHHHCCCcccccccceeeeeccchhhhhhhhhhhcccCcEE
Q psy9259 325 RTLGFTV---DERSKTRGMNEVNATKNATRHAEMVCIDHIVRQYPSTYRRVFESITVIVNVEPCIMCMAALLRVFESITV 401 (489)
Q Consensus 325 ~~VGaVi---dG~IIa~G~N~~~~~~dpt~HAE~~AI~~a~~~l~~~~r~~~~s~~l~~~~ep~~l~~~~~~~~l~g~tL 401 (489)
-+||+.+ ||+|+ .|.|-.+..-+++-.||-.||-.+... |.+.+ ..+...|
T Consensus 210 f~vGaAl~~~dG~i~-~G~nvENAAynpslcaer~Al~~~v~~-G~~~~------------------------~i~~i~l 263 (295)
T PRK09027 210 SYSGVALETKDGRIY-TGRYAENAAFNPSLPPLQGALNLLNLS-GEDFS------------------------DIQRAVL 263 (295)
T ss_pred CceeEEEEeCCCCEE-EEEEEEcCCCCCcccHHHHHHHHHHHc-CCCcc------------------------CEEEEEE
Confidence 4788754 78887 899998889999999999999998753 32211 1222333
Q ss_pred EE----ecCCChhhHHHHHHcCCCEE
Q psy9259 402 IV----NVEPCIMCMAALLSLNIRTI 423 (489)
Q Consensus 402 Yv----TlEPC~MCa~AIi~sgIkrV 423 (489)
+. ...||.||-..|...+-..+
T Consensus 264 v~~~~~~ispcg~cRq~L~ef~~~~~ 289 (295)
T PRK09027 264 VEKADAKLSQWDATQATLKALGCHEL 289 (295)
T ss_pred EeCCCCCcCchHHHHHHHHHhCCCCc
Confidence 33 24799999999988654433
No 45
>PHA03199 uracil DNA glycosylase; Provisional
Probab=73.40 E-value=28 Score=36.30 Aligned_cols=85 Identities=14% Similarity=0.029 Sum_probs=48.0
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHHHh-hcCceEEEEechHHHHHHHHHHHhcccccceEeeecCCCCCCCC--CCchh
Q psy9259 216 ITPAELKNKTTIEKLNSICDKSLSDIVK-HLGIETVIAIGKFAETRAEKALKSNRIFTVKVTSISHPSPRNPA--SNKNW 292 (489)
Q Consensus 216 ~tp~~l~~~~~~~~l~~~c~~~L~~~i~-~l~~~~vv~vG~~a~~~~~~~~~~~~~~~v~V~~L~HPSprnp~--anr~W 292 (489)
+|-.+-++..-...=|+...+.+.+.|. .-++=|.+.-|++|++... . ... .--|+...||||.+.. -+.+-
T Consensus 210 LTV~~g~~~SH~~~GWe~FTd~vI~~Ls~~~~~vVFlLWG~~Aq~k~~--~--~~~-kH~IL~s~HPSPLSa~gFfGs~h 284 (304)
T PHA03199 210 LTVKRGTPGSHFYLGWDMLIKRMLKRLCENRTGLVFMLWGAHAQKTIQ--P--NPR-CHLVLTHAHPSPLSRSEFRNCKH 284 (304)
T ss_pred eeecCCCCCccccCCHHHHHHHHHHHHHhcCCCeEEEEcCHHHHhhcc--C--CCC-CeEEEeCCCCCccccccCCCCCH
Confidence 4444433332333346666666666765 4445677888999997543 1 111 1247889999998621 11123
Q ss_pred hHHHHHHHHhcCc
Q psy9259 293 VENTTKKLKDLGV 305 (489)
Q Consensus 293 ~E~a~~aLeEAgv 305 (489)
-.++.+.|.+.+.
T Consensus 285 FskaN~~L~~~g~ 297 (304)
T PHA03199 285 FLQANEYFLKKGE 297 (304)
T ss_pred HHHHHHHHHHcCC
Confidence 3555666776653
No 46
>PHA03347 uracil DNA glycosylase; Provisional
Probab=70.84 E-value=1.1e+02 Score=31.30 Aligned_cols=87 Identities=17% Similarity=0.094 Sum_probs=49.2
Q ss_pred CCCCCCCCChhhHHHHHHHHHHHHHHHHh-hcCceEEEEechHHHHHHHHHHHhcccccceEeeecCCCCCCCCCC----
Q psy9259 215 NITPAELKNKTTIEKLNSICDKSLSDIVK-HLGIETVIAIGKFAETRAEKALKSNRIFTVKVTSISHPSPRNPASN---- 289 (489)
Q Consensus 215 n~tp~~l~~~~~~~~l~~~c~~~L~~~i~-~l~~~~vv~vG~~a~~~~~~~~~~~~~~~v~V~~L~HPSprnp~an---- 289 (489)
-+|-.+-++..-+..=|+...+.+.+.|. .-++=|.+.-|++|++....+- .. .-.|+...||||.+....
T Consensus 147 vLTV~~g~a~SH~~~GWe~FTd~vI~~l~~~~~~vVFlLWG~~Aq~k~~lI~--~~--kh~iL~s~HPSPLSa~rg~~~~ 222 (252)
T PHA03347 147 ILTVEKGKPGSHSDLGWAWFTDYIISSLSEKLKACVFMLWGSKAIDKASLIN--SQ--KHLVLKAQHPSPLAANSTRSST 222 (252)
T ss_pred eeeecCCCCCCccCCChHHHHHHHHHHHHccCCCeEEEEeCHHHHHhhhccC--CC--CcEEEeCCCCCccccCCCCccc
Confidence 34444444432233335555566666665 4445667778999997554331 11 124899999999753210
Q ss_pred -chh-----hHHHHHHHHhcCc
Q psy9259 290 -KNW-----VENTTKKLKDLGV 305 (489)
Q Consensus 290 -r~W-----~E~a~~aLeEAgv 305 (489)
+++ -.++.+.|.+.+.
T Consensus 223 ~~gF~Gs~hFsk~N~~L~~~g~ 244 (252)
T PHA03347 223 WPKFLGCNHFVLANKYLTQHGK 244 (252)
T ss_pred CCCCCCCCHHHHHHHHHHHcCC
Confidence 233 4566667777663
No 47
>PHA03204 uracil DNA glycosylase; Provisional
Probab=70.56 E-value=26 Score=36.75 Aligned_cols=84 Identities=17% Similarity=0.093 Sum_probs=50.1
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHHHh-hcCceEEEEechHHHHHHHHHHHhcccccceEeeecCCCCCCCCCCchh--
Q psy9259 216 ITPAELKNKTTIEKLNSICDKSLSDIVK-HLGIETVIAIGKFAETRAEKALKSNRIFTVKVTSISHPSPRNPASNKNW-- 292 (489)
Q Consensus 216 ~tp~~l~~~~~~~~l~~~c~~~L~~~i~-~l~~~~vv~vG~~a~~~~~~~~~~~~~~~v~V~~L~HPSprnp~anr~W-- 292 (489)
+|-.+-++..-...=|+...+.+.+.|. .-++=|.+.-|++|++....+-... .--|+...||||.+ +++|
T Consensus 224 LTV~~gkp~SH~~~GWe~FTd~vI~~Ls~~~~~vVFlLWG~~Aq~k~~lId~~~---kH~IL~s~HPSPLS---~rgFfG 297 (322)
T PHA03204 224 LTVKRGDPGSHHSVGWQILVRNVLRRLSQSTRGIVFMLWGAQAQTMYFQTDNDD---RHLVLKYSHPSPLS---RKPFAH 297 (322)
T ss_pred eeecCCCCCccccCChHHHHHHHHHHHHcCCCCeEEEEeCHHHHHHHhhcCCcC---CeEEEeCCCCCccc---cCCCCC
Confidence 4444444442233336666667777775 3445567778999997554431100 12488899999986 4544
Q ss_pred ---hHHHHHHHHhcCc
Q psy9259 293 ---VENTTKKLKDLGV 305 (489)
Q Consensus 293 ---~E~a~~aLeEAgv 305 (489)
-.++.+.|.+.+.
T Consensus 298 s~hFskaN~~L~~~g~ 313 (322)
T PHA03204 298 CTHFKDANEFLCKMGK 313 (322)
T ss_pred CChHHHHHHHHHHcCC
Confidence 3566677777764
No 48
>COG3663 Mug G:T/U mismatch-specific DNA glycosylase [DNA replication, recombination, and repair]
Probab=69.44 E-value=4.7 Score=38.51 Aligned_cols=30 Identities=20% Similarity=0.357 Sum_probs=24.7
Q ss_pred HhcCCCcEEEEeecCCCccccccCcccCChh
Q psy9259 110 YCNSKKKILFLGMNPGPWGMVQCGIPFGEVK 140 (489)
Q Consensus 110 y~~~~~rvl~lGmnPGp~Gm~qTGvPFgd~~ 140 (489)
|.+...+|||+|.||| --..++|-+|..++
T Consensus 5 vl~~~~~vli~Gs~Pg-~~S~~~gfyya~P~ 34 (169)
T COG3663 5 VLDPGLRVLILGSFPG-EDSRAAGFYYAHPR 34 (169)
T ss_pred ccCCCCeEEEEecCCc-hhhHhccCCCCCch
Confidence 4567899999999999 55589999998653
No 49
>TIGR01355 cyt_deam_dimer cytidine deaminase, homodimeric. This homodimeric zinc metalloprotein is found in Arabidopis and some Proteobacteria. A related, homotetrameric form with a much smaller subunit is found most bacteria and in animals. Both types may act on deoxycytidine as well as cytidine.
Probab=68.31 E-value=28 Score=35.95 Aligned_cols=39 Identities=13% Similarity=0.141 Sum_probs=33.0
Q ss_pred CeEEEEE---CCcEEEEeeCCCCCCCCCchHHHHHHHHHHHHH
Q psy9259 325 RTLGFTV---DERSKTRGMNEVNATKNATRHAEMVCIDHIVRQ 364 (489)
Q Consensus 325 ~~VGaVi---dG~IIa~G~N~~~~~~dpt~HAE~~AI~~a~~~ 364 (489)
-+||+.+ ||+|. .|.|-.+...+++-.||..||-.+...
T Consensus 195 f~vgaal~~~~g~i~-~G~nvENAay~~slcaer~Ai~~~v~~ 236 (283)
T TIGR01355 195 SPSGVALLDKEGKVY-RGWYIESAAFNPSLGPVQAALVDFMAN 236 (283)
T ss_pred CceeEEEEeCCCCEE-EEEEeecCCCCCcccHHHHHHHHHHHh
Confidence 4788754 78877 899999999999999999999998764
No 50
>PHA03202 uracil DNA glycosylase; Provisional
Probab=62.05 E-value=19 Score=37.62 Aligned_cols=83 Identities=17% Similarity=0.093 Sum_probs=48.5
Q ss_pred CCCCCCCCChhhHHHHHHHHHHHHHHHHh-hcCceEEEEechHHHHHHHHHHHhcccccceEeeecCCCCCCCCCCchh-
Q psy9259 215 NITPAELKNKTTIEKLNSICDKSLSDIVK-HLGIETVIAIGKFAETRAEKALKSNRIFTVKVTSISHPSPRNPASNKNW- 292 (489)
Q Consensus 215 n~tp~~l~~~~~~~~l~~~c~~~L~~~i~-~l~~~~vv~vG~~a~~~~~~~~~~~~~~~v~V~~L~HPSprnp~anr~W- 292 (489)
-+|-.+-++..-...=|+...+.+.+.|. .-++=|.+.-|++|++... + ... .-.|+...||||.+- ++|
T Consensus 217 vLTV~~gka~SH~~~GWe~FTd~vI~~L~~~~~~vVF~LWG~~Aq~k~~--~-d~~--kH~VL~s~HPSPLS~---~gFf 288 (313)
T PHA03202 217 TLTVARGKPGSHATLGWHRLVRAVIDRLCTTSQGLVFMLWGAHAQKSCS--P-NRQ--HHLVLTYGHPSPLSR---VNFR 288 (313)
T ss_pred ceeeeCCCCCccccCChHHHHHHHHHHHHhcCCCcEEEEeCHHHHhhcc--c-CCC--CceEEeCCCCCcccc---cCCC
Confidence 34444444432333336666667777775 3444567788999997532 1 111 135889999999862 233
Q ss_pred ----hHHHHHHHHhcCc
Q psy9259 293 ----VENTTKKLKDLGV 305 (489)
Q Consensus 293 ----~E~a~~aLeEAgv 305 (489)
-.++.+.|.+.+.
T Consensus 289 g~~hFsk~N~~L~~~g~ 305 (313)
T PHA03202 289 DCPHFLEANAYLTKTGR 305 (313)
T ss_pred CCCHHHHHHHHHHHcCC
Confidence 3455566777653
No 51
>PF08210 APOBEC_N: APOBEC-like N-terminal domain; InterPro: IPR013158 This domain is found at the N terminus of the Apolipoprotein B mRNA editing enzyme. Apobec-1 catalyzes C to U editing of apolipoprotein B (apoB) mRNA in the mammalian intestine. The N-terminal domain of APOBEC-1 like proteins is the catalytic domain, while the C-terminal domain is a pseudocatalyitc domain. More specifically, the catalytic domain is a zinc dependent deaminases domain and is essential for cytidine deamination. APOBEC-3 like members contain two copies of this domain. This family also includes the functionally homologous activation induced deaminase, which is essential for the development of antibody diversity in B lymphocytes. RNA editing by APOBEC-1 requires homodimerisation and this complex interacts with RNA binding proteins to from the editosome [] (and references therein).; GO: 0008270 zinc ion binding, 0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines; PDB: 3IQS_A 3IR2_A 3V4J_B 2KEM_A 2KBO_A 3V4K_A 3E1U_A 2JYW_A 2RPZ_A.
Probab=56.83 E-value=12 Score=36.10 Aligned_cols=117 Identities=21% Similarity=0.197 Sum_probs=58.4
Q ss_pred CCcEEEEeeCCCCCCCCCchHHHHHHHHHHHHHCCCcccccccceeeeeccchhhhhhhhhhhcccCcEEEEecCCChh-
Q psy9259 332 DERSKTRGMNEVNATKNATRHAEMVCIDHIVRQYPSTYRRVFESITVIVNVEPCIMCMAALLRVFESITVIVNVEPCIM- 410 (489)
Q Consensus 332 dG~IIa~G~N~~~~~~dpt~HAE~~AI~~a~~~l~~~~r~~~~s~~l~~~~ep~~l~~~~~~~~l~g~tLYvTlEPC~M- 410 (489)
+|.-+-.|+-... .. ...|||+.-|+........+ | ...-..|.|+|..||.-
T Consensus 35 ~~~~~~~g~~~n~-~~-~~~HAE~~fl~~i~~~~~~~---------------~---------~~~y~ITwy~SwSPC~~~ 88 (188)
T PF08210_consen 35 DGSWVQRGYFRNE-NC-KGRHAELCFLDWIRSWLLFD---------------P---------DQIYRITWYLSWSPCPES 88 (188)
T ss_dssp CTTEEEECECCST-TS-TSB-HHHHHHHHCCCGTB-T---------------T---------TSEEEEEEEESSS--CC-
T ss_pred cCCCceEEEEECC-CC-CCCCHHHHHHHHHHHhhccC---------------C---------CceEEEEEEEecCCCcch
Confidence 5545555554321 11 67999999987754321000 0 01235799999999999
Q ss_pred ---hHHHHHHc-------CCCEEEEEeeCCc----------ccccccCCcccCCCeEEEecCCCCCCcHHHHHHHHHHhh
Q psy9259 411 ---CMAALLSL-------NIRTIVFACSNDR----------FGYNVLGSDEKTNYIEIVENTDDNTPKDDAVIQNIKVNS 470 (489)
Q Consensus 411 ---Ca~AIi~s-------gIkrVVyg~~d~~----------~Gg~il~~~~~~~~ieV~~gv~~~~~~~ee~~~Ll~~F~ 470 (489)
||..|+.. ++.--+|.+.--. -|-..|. ..++.|.- . ...+-...++.|-
T Consensus 89 ~~~Ca~~i~~FL~~~~~~~v~L~I~~arLY~~~~~~~~~~~eGLr~L~----~aGv~v~i-M-----~~~df~~cw~~FV 158 (188)
T PF08210_consen 89 DHCCAEKIAEFLKKHLKPNVSLSIFAARLYYHWEPEPLWNQEGLRRLA----SAGVQVEI-M-----SYKDFEYCWDNFV 158 (188)
T ss_dssp ---HHHHHHHHHCCC--TTEEEEEEESS--STTSTT---HHHHHHHHH----HCTEEEEE-------SHHHHHHHHHCCE
T ss_pred hhHHHHHHHHHHHHhCCCCCeEEEEEEeeeeecCCcchhHHHHHHHHH----HcCCEEEE-c-----CHHHHHHHHHhcc
Confidence 99999874 3333344442111 1111111 13554432 1 2456677788887
Q ss_pred hhc--CCCCCcccccc
Q psy9259 471 AIT--NPNTPIEKPTD 484 (489)
Q Consensus 471 ~~~--np~~P~~k~k~ 484 (489)
..+ .++.||++-+.
T Consensus 159 ~~~~~~~f~pW~~l~~ 174 (188)
T PF08210_consen 159 HNGENRPFQPWEKLEE 174 (188)
T ss_dssp TTT-S-S----TTCCH
T ss_pred cccCCCCCCccchhhH
Confidence 666 78999987653
No 52
>PHA03201 uracil DNA glycosylase; Provisional
Probab=55.59 E-value=33 Score=36.04 Aligned_cols=85 Identities=14% Similarity=0.068 Sum_probs=48.5
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHHHhhcCc-eEEEEechHHHHHHHHHHHhcccccceEeeecCCCCCCCC--CCchh
Q psy9259 216 ITPAELKNKTTIEKLNSICDKSLSDIVKHLGI-ETVIAIGKFAETRAEKALKSNRIFTVKVTSISHPSPRNPA--SNKNW 292 (489)
Q Consensus 216 ~tp~~l~~~~~~~~l~~~c~~~L~~~i~~l~~-~~vv~vG~~a~~~~~~~~~~~~~~~v~V~~L~HPSprnp~--anr~W 292 (489)
+|-.+-++..-...=|+...+.+.+.|..-+. =|.+.-|++|++... + ... .-.|+...||||.+.. -+.+-
T Consensus 224 LTV~~g~a~SH~~~GWe~FTd~vI~~L~~~~~~vVF~LWG~~Aq~k~~--i-d~~--kH~IL~s~HPSPLS~~gFfgs~h 298 (318)
T PHA03201 224 LTVRRGEPASHAKIGWDRFVGSVVRRLAASRPGLVFMLWGAHAQNAIR--P-DPR--VHRVLTYSHPSPLSKVPFGSCRH 298 (318)
T ss_pred eeecCCCCCccccCCHHHHHHHHHHHHHhcCCCeEEEecCHHHHhhcc--c-CCC--CceEEeCCCCCCccccCCCCCCH
Confidence 44444443312233377777777788764444 456677999987543 2 111 1247888999998621 11123
Q ss_pred hHHHHHHHHhcCc
Q psy9259 293 VENTTKKLKDLGV 305 (489)
Q Consensus 293 ~E~a~~aLeEAgv 305 (489)
-.++.+.|.+.+.
T Consensus 299 FskaN~~L~~~g~ 311 (318)
T PHA03201 299 FCLANQYLRERSL 311 (318)
T ss_pred HHHHHHHHHHcCC
Confidence 3556667777663
No 53
>PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3. Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A.
Probab=55.56 E-value=32 Score=35.59 Aligned_cols=63 Identities=21% Similarity=0.306 Sum_probs=35.5
Q ss_pred HHHHHHHhhcCceEEEEechHHHHHHHHHHHhcccccceEeeecCCCCCCCCCCchhhHHHHHHHHh
Q psy9259 236 KSLSDIVKHLGIETVIAIGKFAETRAEKALKSNRIFTVKVTSISHPSPRNPASNKNWVENTTKKLKD 302 (489)
Q Consensus 236 ~~L~~~i~~l~~~~vv~vG~~a~~~~~~~~~~~~~~~v~V~~L~HPSprnp~anr~W~E~a~~aLeE 302 (489)
+-|.++++.++.+.|||+|-.|..+.+...+-....-+.=..|.+|.+. ..+|.||+...+..
T Consensus 87 e~l~~Vl~~f~lk~vIg~GvGAGAnIL~rfAl~~p~~V~GLiLvn~~~~----~~gw~Ew~~~K~~~ 149 (283)
T PF03096_consen 87 EMLPEVLDHFGLKSVIGFGVGAGANILARFALKHPERVLGLILVNPTCT----AAGWMEWFYQKLSS 149 (283)
T ss_dssp CTHHHHHHHHT---EEEEEETHHHHHHHHHHHHSGGGEEEEEEES---S-------HHHHHHHHHH-
T ss_pred HHHHHHHHhCCccEEEEEeeccchhhhhhccccCccceeEEEEEecCCC----CccHHHHHHHHHhc
Confidence 4677778878888888888888877764332221112444557788877 35799999887664
No 54
>KOG2931|consensus
Probab=53.22 E-value=52 Score=34.50 Aligned_cols=63 Identities=22% Similarity=0.325 Sum_probs=40.0
Q ss_pred HHHHHHHhhcCceEEEEechHHHHHHHHHHHhcccccceEeeecCCCCCCCCCCchhhHHHHHHHHh
Q psy9259 236 KSLSDIVKHLGIETVIAIGKFAETRAEKALKSNRIFTVKVTSISHPSPRNPASNKNWVENTTKKLKD 302 (489)
Q Consensus 236 ~~L~~~i~~l~~~~vv~vG~~a~~~~~~~~~~~~~~~v~V~~L~HPSprnp~anr~W~E~a~~aLeE 302 (489)
+-|..+++-++.+.|||+|-.|..+.+...+-....-+-=..|-++-+. ..+|.||+...+..
T Consensus 110 d~l~~VL~~f~lk~vIg~GvGAGAyIL~rFAl~hp~rV~GLvLIn~~~~----a~gwiew~~~K~~s 172 (326)
T KOG2931|consen 110 DMLPEVLDHFGLKSVIGMGVGAGAYILARFALNHPERVLGLVLINCDPC----AKGWIEWAYNKVSS 172 (326)
T ss_pred HHHHHHHHhcCcceEEEecccccHHHHHHHHhcChhheeEEEEEecCCC----CchHHHHHHHHHHH
Confidence 5777788878888888888877777664432222211333345566554 45799998876664
No 55
>PF14440 XOO_2897-deam: Xanthomonas XOO_2897-like deaminase
Probab=52.99 E-value=8.4 Score=34.77 Aligned_cols=55 Identities=15% Similarity=0.321 Sum_probs=38.8
Q ss_pred CCchHHHHHHHHHHHHHCCCcccccccceeeeeccchhhhhhhhhhhcccCcEEEEecCCChh---hHHHHHHc-CCCEE
Q psy9259 348 NATRHAEMVCIDHIVRQYPSTYRRVFESITVIVNVEPCIMCMAALLRVFESITVIVNVEPCIM---CMAALLSL-NIRTI 423 (489)
Q Consensus 348 dpt~HAE~~AI~~a~~~l~~~~r~~~~s~~l~~~~ep~~l~~~~~~~~l~g~tLYvTlEPC~M---Ca~AIi~s-gIkrV 423 (489)
-...|+|..++..+.+. +- .|- .=..||+=+|||.. |+..|-.+ -=-+|
T Consensus 43 ~~~~H~E~~il~~l~~~-~v---------------~p~-----------~I~elYtEl~PC~~~~~C~~~l~~~~p~a~v 95 (118)
T PF14440_consen 43 GGKPHSERAILHQLRAH-GV---------------PPE-----------QITELYTELEPCELGGYCARMLRNSLPGAEV 95 (118)
T ss_pred CCCCChHHHHHHHHHHc-CC---------------cHH-----------HHHHHHHhcccccccchHHHHHHhhCCCCeE
Confidence 35789999999988753 11 110 12468999999988 99999886 23367
Q ss_pred EEEeeC
Q psy9259 424 VFACSN 429 (489)
Q Consensus 424 Vyg~~d 429 (489)
+|....
T Consensus 96 t~s~~y 101 (118)
T PF14440_consen 96 TYSFDY 101 (118)
T ss_pred EEeccC
Confidence 777653
No 56
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=37.05 E-value=95 Score=32.76 Aligned_cols=39 Identities=10% Similarity=0.079 Sum_probs=29.8
Q ss_pred CceEEecchhh--HHHHHHHHHHHHhcCCCcEEEEeecCCC
Q psy9259 88 PVEYVYNPLDY--AFELHSKYVYKYCNSKKKILFLGMNPGP 126 (489)
Q Consensus 88 p~~~vyNP~~y--a~~~h~~y~~ky~~~~~rvl~lGmnPGp 126 (489)
.+.||.|.-.- -.+.-..|+.++...+++|||||-+|..
T Consensus 31 ~gihIIDL~kT~~~L~~A~~~i~~~~~~gg~iLfVgTk~~~ 71 (326)
T PRK12311 31 NNIHIIDLAQTVPLLHRALQAVSDTVAKGGRVLFVGTKRQA 71 (326)
T ss_pred CCcEEEcHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCcHHH
Confidence 36788887654 3344556889999899999999999964
No 57
>PLN02402 cytidine deaminase
Probab=32.43 E-value=1.1e+02 Score=32.17 Aligned_cols=39 Identities=15% Similarity=0.118 Sum_probs=32.9
Q ss_pred CeEEEEE---CCcEEEEeeCCCCCCCCCchHHHHHHHHHHHHH
Q psy9259 325 RTLGFTV---DERSKTRGMNEVNATKNATRHAEMVCIDHIVRQ 364 (489)
Q Consensus 325 ~~VGaVi---dG~IIa~G~N~~~~~~dpt~HAE~~AI~~a~~~ 364 (489)
-+||+.+ ||+|+ .|.|-.+..-+++.+||-.||-.+...
T Consensus 213 f~VGaal~~~dG~i~-~G~nvENAay~~slcAer~Ai~~~v~~ 254 (303)
T PLN02402 213 CPSGVALMDCEGKVY-RGSYMESAAYNPSMGPVQAALVAYVAG 254 (303)
T ss_pred CceeEEEEeCCCCEE-EEEEEEcCCCCCcccHHHHHHHHHHHc
Confidence 3788753 78877 899998888999999999999998765
No 58
>COG0692 Ung Uracil DNA glycosylase [DNA replication, recombination, and repair]
Probab=32.38 E-value=72 Score=31.88 Aligned_cols=69 Identities=12% Similarity=0.185 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHh-hcCceEEEEechHHHHHHHHHHHhcccccceEeeecCCCCCCCCCCchh-----hHHHHHHHHhc
Q psy9259 230 LNSICDKSLSDIVK-HLGIETVIAIGKFAETRAEKALKSNRIFTVKVTSISHPSPRNPASNKNW-----VENTTKKLKDL 303 (489)
Q Consensus 230 l~~~c~~~L~~~i~-~l~~~~vv~vG~~a~~~~~~~~~~~~~~~v~V~~L~HPSprnp~anr~W-----~E~a~~aLeEA 303 (489)
-|+...+.+.+.|. .-.+-|.|.-|++|++..+.+-. . .--|+..+||||-+ ++|+. -.++.+.|++.
T Consensus 140 GWE~FTd~vi~~l~~~~~~vVfiLWG~~Aq~k~~~I~~--~--~h~il~s~HPSPLS--a~rGFfG~~hFsk~N~~L~~~ 213 (223)
T COG0692 140 GWETFTDAVIKALNERREPVVFVLWGSHAQKKKKLIDN--K--KHLILEAPHPSPLS--AHRGFFGCKHFSKANEWLEKH 213 (223)
T ss_pred ChHHHHHHHHHHHHhcCCceEEEEeCHHHHHHHhccCC--C--CeEEEeCCCCCccc--cccCccCCCchHHHHHHHHHc
Confidence 34444455555554 56678888999999866554422 1 23578899999985 34543 35566677776
Q ss_pred C
Q psy9259 304 G 304 (489)
Q Consensus 304 g 304 (489)
+
T Consensus 214 g 214 (223)
T COG0692 214 G 214 (223)
T ss_pred C
Confidence 6
No 59
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=31.01 E-value=48 Score=33.54 Aligned_cols=62 Identities=24% Similarity=0.231 Sum_probs=47.2
Q ss_pred HHHHHHhcCCCcEEEEeecCCCccccccCcccCChhhhhhhhcccCCCCCCcccCCCCCcCCCCCCccc--------cch
Q psy9259 105 KYVYKYCNSKKKILFLGMNPGPWGMVQCGIPFGEVKAVKGFLNIEGKVNQPEKFHKDRPIKGLDCPRSE--------ISG 176 (489)
Q Consensus 105 ~y~~ky~~~~~rvl~lGmnPGp~Gm~qTGvPFgd~~~vr~wlgi~~~v~~p~~ehp~rpv~g~~c~~~e--------vSg 176 (489)
+.+.+|.+-....+|+|..+ +.+++.|++|+.. +|.|.|.||||...+ .|+
T Consensus 88 ~~v~~ll~~G~~rViiGt~a-----------v~~p~~v~~~~~~----------~g~rivv~lD~r~g~vav~GW~e~s~ 146 (241)
T COG0106 88 EDVEALLDAGVARVIIGTAA-----------VKNPDLVKELCEE----------YGDRIVVALDARDGKVAVSGWQEDSG 146 (241)
T ss_pred HHHHHHHHCCCCEEEEecce-----------ecCHHHHHHHHHH----------cCCcEEEEEEccCCcccccccccccc
Confidence 56778888888888998765 8899999999864 556899999999954 455
Q ss_pred hHHHHHHHHhh
Q psy9259 177 KRLWELASQLS 187 (489)
Q Consensus 177 ~r~w~~~~~~~ 187 (489)
.-+|.+.++.-
T Consensus 147 ~~~~~l~~~~~ 157 (241)
T COG0106 147 VELEELAKRLE 157 (241)
T ss_pred CCHHHHHHHHH
Confidence 55565555444
No 60
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=28.90 E-value=3.1e+02 Score=25.17 Aligned_cols=79 Identities=16% Similarity=0.302 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCceEEEEechHHHHHHHHHHHhcccc-cceEe----ee--cCCCCCCCCCCch--hhHHHH
Q psy9259 227 IEKLNSICDKSLSDIVKHLGIETVIAIGKFAETRAEKALKSNRIF-TVKVT----SI--SHPSPRNPASNKN--WVENTT 297 (489)
Q Consensus 227 ~~~l~~~c~~~L~~~i~~l~~~~vv~vG~~a~~~~~~~~~~~~~~-~v~V~----~L--~HPSprnp~anr~--W~E~a~ 297 (489)
...+.....+.|.+.|+..+||+||+.=-++..-....++..+.. .++++ -. .|+.+..+..+.. +.|.+.
T Consensus 70 ~~~~~~~~~~~l~~~l~~~~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvTD~~~~H~~W~~~~~D~y~Vase~~~ 149 (169)
T PF06925_consen 70 LSALSRLFARRLIRLLREFQPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVTDFDTVHPFWIHPGVDRYFVASEEVK 149 (169)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEcCCCCCCcCeecCCCCEEEECCHHHH
Confidence 445667777889999999999999998766444412222232221 23322 12 3999988887766 678888
Q ss_pred HHHHhcCc
Q psy9259 298 KKLKDLGV 305 (489)
Q Consensus 298 ~aLeEAgv 305 (489)
+.|.+.|+
T Consensus 150 ~~l~~~Gi 157 (169)
T PF06925_consen 150 EELIERGI 157 (169)
T ss_pred HHHHHcCC
Confidence 88888886
No 61
>PF14441 OTT_1508_deam: OTT_1508-like deaminase
Probab=26.51 E-value=1.2e+02 Score=27.61 Aligned_cols=45 Identities=20% Similarity=0.399 Sum_probs=32.7
Q ss_pred CCCCchHHHHHHHHHHHHHCCCcccccccceeeeeccchhhhhhhhhhhcccCcEEEEecCCChhhHHHHHHcC
Q psy9259 346 TKNATRHAEMVCIDHIVRQYPSTYRRVFESITVIVNVEPCIMCMAALLRVFESITVIVNVEPCIMCMAALLSLN 419 (489)
Q Consensus 346 ~~dpt~HAE~~AI~~a~~~l~~~~r~~~~s~~l~~~~ep~~l~~~~~~~~l~g~tLYvTlEPC~MCa~AIi~sg 419 (489)
...+.-||||..+....+.... ..--|=+|--||.+|...|...+
T Consensus 63 ~~~~~vHaE~~ll~~~~~~~~~-----------------------------~~~yIG~SK~~C~lC~~~~~~~~ 107 (142)
T PF14441_consen 63 SFKPSVHAEMQLLDHLERHFDP-----------------------------PPRYIGCSKPSCFLCYLYFQAHG 107 (142)
T ss_pred CCCCCeehHHHHHHHHHHhcCC-----------------------------CCCEEEEeCchHHhHHHHHHHhC
Confidence 3467889999999887765101 11234468889999999999987
No 62
>KOG1596|consensus
Probab=25.93 E-value=55 Score=33.58 Aligned_cols=73 Identities=26% Similarity=0.312 Sum_probs=51.8
Q ss_pred eEEecchhh--HHHHHHHHHHHHhcCCCcEEEEeecCCCccccccCcccCChhhhhhhhcccCCCCCCcccCCCCCcCCC
Q psy9259 90 EYVYNPLDY--AFELHSKYVYKYCNSKKKILFLGMNPGPWGMVQCGIPFGEVKAVKGFLNIEGKVNQPEKFHKDRPIKGL 167 (489)
Q Consensus 90 ~~vyNP~~y--a~~~h~~y~~ky~~~~~rvl~lGmnPGp~Gm~qTGvPFgd~~~vr~wlgi~~~v~~p~~ehp~rpv~g~ 167 (489)
+.|+||+.. |.-++.--=+-+.....|||.||-+-|. .+++|-|..|=++-|.
T Consensus 131 yRVWnPfrSKLAA~I~gGvdnihikpGsKVLYLGAasGt-----------tVSHvSDiVGpeG~VY-------------- 185 (317)
T KOG1596|consen 131 YRVWNPFRSKLAAGILGGVDNIHIKPGSKVLYLGAASGT-----------TVSHVSDIVGPEGCVY-------------- 185 (317)
T ss_pred EEEeChHHHHHHHHhhcCccceeecCCceEEEeeccCCc-----------eeehhhcccCCCceEE--------------
Confidence 567788766 5555554445566778999999976654 4577888877777764
Q ss_pred CCCccccchhHHHHHHHHhh
Q psy9259 168 DCPRSEISGKRLWELASQLS 187 (489)
Q Consensus 168 ~c~~~evSg~r~w~~~~~~~ 187 (489)
+.-.|.-||+.|.....++-
T Consensus 186 AVEfs~rsGRdL~nmAkkRt 205 (317)
T KOG1596|consen 186 AVEFSHRSGRDLINMAKKRT 205 (317)
T ss_pred EEEecccchHHHHHHhhccC
Confidence 22356669988888888888
No 63
>COG2350 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.92 E-value=95 Score=26.81 Aligned_cols=37 Identities=22% Similarity=0.169 Sum_probs=29.1
Q ss_pred ecchhh---HHHHHHHHHHHHhcCCCcEEEEeecCCCcccc
Q psy9259 93 YNPLDY---AFELHSKYVYKYCNSKKKILFLGMNPGPWGMV 130 (489)
Q Consensus 93 yNP~~y---a~~~h~~y~~ky~~~~~rvl~lGmnPGp~Gm~ 130 (489)
-||++. ..+-|.+||++++... |+++.|=.+..-|..
T Consensus 11 ~~~~e~r~~~r~~H~~~L~~~~a~G-~ll~sGP~~~~dg~~ 50 (92)
T COG2350 11 PNPLEKRLAVRPAHLARLKQLYAEG-RLLTSGPFPDRDGGP 50 (92)
T ss_pred CCHHHHHhhhhHHHHHHHHHhhhcC-eEEEeCCCCCCCCCC
Confidence 367776 7889999999998655 899998888777743
No 64
>KOG0664|consensus
Probab=25.68 E-value=69 Score=33.54 Aligned_cols=76 Identities=22% Similarity=0.225 Sum_probs=51.2
Q ss_pred EeecCCCccccccCcccCChhhhhhh-hcccCCCCCCcccCCCCCcC---------------CC--------CCCccccc
Q psy9259 120 LGMNPGPWGMVQCGIPFGEVKAVKGF-LNIEGKVNQPEKFHKDRPIK---------------GL--------DCPRSEIS 175 (489)
Q Consensus 120 lGmnPGp~Gm~qTGvPFgd~~~vr~w-lgi~~~v~~p~~ehp~rpv~---------------g~--------~c~~~evS 175 (489)
.||+||+-|.+-.||-=...+.+.-- -.-.....+|....|+|||. |- +.-++-+|
T Consensus 16 pgqap~~aaaapAqv~aaaAa~i~A~~h~h~h~Pqqq~Di~PDRPIGYGAFGVVWsVTDPRdgrrvalkK~pnvfq~L~s 95 (449)
T KOG0664|consen 16 PGQAPVQAAAAPAQVAAAAAAAILAAAHPHYHPPQQQQDIQPDRPIGYGAFGVVWSVTDPRSGKRVALKKMPNVFQNLAS 95 (449)
T ss_pred cccCcccccccchhhhhhHHHHHHHhhCCCCCCccccccCCCCCcccccceeEEEeccCCCCccchhHhhcchHHHHHHH
Confidence 69999999987777766666655543 33444566677788999984 11 22345567
Q ss_pred hhHHHHHHHHhhCCchhhhhhhchhh
Q psy9259 176 GKRLWELASQLSDGKAADFFKHAYVH 201 (489)
Q Consensus 176 g~r~w~~~~~~~~g~~~~F~~~~fv~ 201 (489)
.+|+.+..+-+| ||+|--|.
T Consensus 96 ~krvFre~kmLc------fFkHdNVL 115 (449)
T KOG0664|consen 96 CKRVFREIKMLS------SFRHDNVL 115 (449)
T ss_pred HHHHHHHHHHHH------hhccccHH
Confidence 777777777777 77776664
No 65
>KOG2994|consensus
Probab=24.25 E-value=1.7e+02 Score=30.10 Aligned_cols=55 Identities=18% Similarity=0.326 Sum_probs=38.9
Q ss_pred cCceEEEEechHHHHHHHHHHHhcccccceEeeecCCCCCCCCCCchhh-----HHHHHHHHhcCc
Q psy9259 245 LGIETVIAIGKFAETRAEKALKSNRIFTVKVTSISHPSPRNPASNKNWV-----ENTTKKLKDLGV 305 (489)
Q Consensus 245 l~~~~vv~vG~~a~~~~~~~~~~~~~~~v~V~~L~HPSprnp~anr~W~-----E~a~~aLeEAgv 305 (489)
-+.=|.+.-|+||+++.+.+... .--|+..-||||.+ ++|+|- .++.+.|++.|.
T Consensus 230 ~k~lVFLLWG~~Aqkk~~~i~~~----kH~Vl~~~HPSpLS--a~rgFFgC~HFsk~N~~Le~~g~ 289 (297)
T KOG2994|consen 230 SKGLVFLLWGRYAQKKGKLIDRK----KHHVLTTAHPSPLS--AYRGFFGCRHFSKTNELLEESGK 289 (297)
T ss_pred CCceEEEEeCchHHHhhcccCcc----cceEEeccCCCccc--ccccccccchhHHHHHHHHHhCC
Confidence 35567778899999887765321 24688889999985 467764 456667777763
No 66
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=21.52 E-value=3e+02 Score=27.94 Aligned_cols=39 Identities=15% Similarity=0.090 Sum_probs=29.0
Q ss_pred CceEEecchhhHHH--HHHHHHHHHhcCCCcEEEEeecCCC
Q psy9259 88 PVEYVYNPLDYAFE--LHSKYVYKYCNSKKKILFLGMNPGP 126 (489)
Q Consensus 88 p~~~vyNP~~ya~~--~h~~y~~ky~~~~~rvl~lGmnPGp 126 (489)
-+.+|+|.-.-... .-..|+.++...+++|||||-+|..
T Consensus 36 ~gi~IIdL~kT~~~L~~A~~~i~~~~~~~g~iLfVgTk~~~ 76 (258)
T PRK05299 36 NGIHIIDLQKTVPMLDEAYNFVRDVAANGGKILFVGTKKQA 76 (258)
T ss_pred CCeEEEcHHHHHHHHHHHHHHHHHHHhCCCEEEEEECcHHH
Confidence 46788887765443 4445788888889999999999754
No 67
>KOG0879|consensus
Probab=21.46 E-value=65 Score=30.07 Aligned_cols=40 Identities=18% Similarity=0.244 Sum_probs=31.4
Q ss_pred chhhhhhhhhhhcccCcEEEEecCCChhhHHHHHHcCCCEEEEEeeC
Q psy9259 383 EPCIMCMAALLRVFESITVIVNVEPCIMCMAALLSLNIRTIVFACSN 429 (489)
Q Consensus 383 ep~~l~~~~~~~~l~g~tLYvTlEPC~MCa~AIi~sgIkrVVyg~~d 429 (489)
.|.++.+++.+.+.+||..|+|+.+|- |.-=+.||||.--
T Consensus 106 ~PGlLSMANsG~~tNGCQFFITcakcd-------fLD~KHVVFGrvl 145 (177)
T KOG0879|consen 106 GPGLLSMANSGKDTNGCQFFITCAKCD-------FLDGKHVVFGRVL 145 (177)
T ss_pred CCceeeccccCCCCCCceEEEEecccc-------cccCceEEEeeee
Confidence 455566677778899999999999995 5667889988743
No 68
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=21.02 E-value=3.6e+02 Score=24.54 Aligned_cols=72 Identities=19% Similarity=0.202 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCceEEEEechHHHHHHHHHHHhcccccceEeeecCCCCCCCCCCchhhHHHHHHHHhcCc
Q psy9259 227 IEKLNSICDKSLSDIVKHLGIETVIAIGKFAETRAEKALKSNRIFTVKVTSISHPSPRNPASNKNWVENTTKKLKDLGV 305 (489)
Q Consensus 227 ~~~l~~~c~~~L~~~i~~l~~~~vv~vG~~a~~~~~~~~~~~~~~~v~V~~L~HPSprnp~anr~W~E~a~~aLeEAgv 305 (489)
+....--+...|++.++.++..++|..|. +.+.+..+.++++. ..|+.-.+..+. .+.|.+.+...+.+.++
T Consensus 47 r~~Fl~~sL~~L~~~L~~~g~~L~v~~g~-~~~~l~~l~~~~~~--~~V~~~~~~~~~----~~~rd~~v~~~l~~~~i 118 (165)
T PF00875_consen 47 RRRFLLESLADLQESLRKLGIPLLVLRGD-PEEVLPELAKEYGA--TAVYFNEEYTPY----ERRRDERVRKALKKHGI 118 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHTTS-EEEEESS-HHHHHHHHHHHHTE--SEEEEE---SHH----HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHhcCcceEEEecc-hHHHHHHHHHhcCc--CeeEeccccCHH----HHHHHHHHHHHHHhcce
Confidence 55566666688999999999999999998 45555566666654 356655555443 34677777777777664
Done!