Query psy9259
Match_columns 489
No_of_seqs 400 out of 2048
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 22:52:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9259.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9259hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1oe4_A SMUG1, single-strand se 100.0 5E-80 1.7E-84 605.1 20.2 245 61-310 2-246 (247)
2 3dh1_A TRNA-specific adenosine 100.0 1.1E-32 3.8E-37 261.5 11.5 135 325-484 46-189 (189)
3 2nx8_A TRNA-specific adenosine 100.0 2.5E-30 8.5E-35 243.4 9.4 124 325-479 36-166 (179)
4 1z3a_A TRNA-specific adenosine 100.0 2.8E-29 9.7E-34 234.0 13.2 121 325-476 29-156 (168)
5 2b3j_A TRNA adenosine deaminas 100.0 8.3E-29 2.8E-33 228.7 12.8 119 325-474 27-152 (159)
6 2g84_A Cytidine and deoxycytid 100.0 5.1E-28 1.7E-32 230.8 14.2 133 325-484 48-193 (197)
7 1wwr_A TRNA adenosine deaminas 99.9 4E-28 1.4E-32 226.9 11.4 117 325-473 43-166 (171)
8 2a8n_A Cytidine and deoxycytid 99.9 4.5E-28 1.6E-32 220.1 11.2 114 325-469 24-144 (144)
9 1wkq_A Guanine deaminase; doma 99.9 1.1E-28 3.9E-33 229.2 7.2 118 325-474 32-160 (164)
10 1p6o_A Cytosine deaminase; hyd 99.9 4.6E-26 1.6E-30 210.9 7.4 111 325-472 34-150 (161)
11 2hxv_A Diaminohydroxyphosphori 99.9 9.7E-25 3.3E-29 225.1 12.4 143 292-486 14-168 (360)
12 2b3z_A Riboflavin biosynthesis 99.9 2.4E-24 8.1E-29 223.2 10.5 121 322-486 33-166 (373)
13 2g6v_A Riboflavin biosynthesis 99.9 9.5E-24 3.3E-28 220.7 8.2 121 322-486 49-182 (402)
14 1vq2_A DCMP deaminase, deoxycy 99.9 1.3E-22 4.6E-27 192.4 9.3 106 322-465 19-182 (193)
15 2w4l_A DCMP deaminse, deoxycyt 99.9 5.2E-23 1.8E-27 193.4 4.5 127 291-472 11-166 (178)
16 2hvw_A Deoxycytidylate deamina 99.9 9.3E-22 3.2E-26 185.8 10.7 97 324-452 60-175 (184)
17 3g8q_A Predicted RNA-binding p 99.8 1.8E-19 6.3E-24 174.0 6.9 69 325-433 22-92 (278)
18 2nyt_A Probable C->U-editing e 99.7 2.9E-18 1E-22 162.6 9.8 114 333-485 48-177 (190)
19 3ikb_A Uncharacterized conserv 99.7 2.5E-18 8.6E-23 163.9 3.7 149 111-317 34-195 (198)
20 2d3y_A Uracil-DNA glycosylase; 99.6 3.9E-16 1.3E-20 150.7 7.0 139 109-295 45-206 (219)
21 1ui0_A Uracil-DNA glycosylase; 99.5 1.8E-14 6.1E-19 138.0 6.9 130 106-288 25-165 (205)
22 1vk2_A Uracil-DNA glycosylase 99.5 2.3E-14 7.7E-19 137.1 5.2 128 107-287 43-182 (204)
23 1uwz_A Cytidine deaminase; CDD 99.0 1.6E-09 5.6E-14 97.4 10.1 67 325-419 24-97 (136)
24 2fr5_A Cytidine deaminase; tet 98.8 1.5E-08 5.2E-13 92.2 10.7 90 290-419 13-110 (146)
25 2z3g_A Blasticidin-S deaminase 98.5 3.8E-07 1.3E-11 81.3 10.5 67 325-421 27-101 (130)
26 1wyw_A TDG, G/T mismatch-speci 98.5 6.7E-07 2.3E-11 87.0 10.8 125 110-285 18-167 (230)
27 3b8f_A Putative blasticidin S 98.0 1.1E-05 3.8E-10 72.9 7.8 73 326-426 24-107 (142)
28 3r2n_A Cytidine deaminase; str 97.9 5.9E-05 2E-09 68.0 9.7 72 325-426 31-111 (138)
29 2d30_A Cytidine deaminase; pur 97.9 7.9E-05 2.7E-09 67.3 10.4 91 289-419 9-106 (141)
30 1r5t_A Cytidine deaminase; zin 97.8 0.0001 3.6E-09 66.5 10.6 68 325-419 32-107 (142)
31 1mug_A Protein (G:T/U specific 97.6 0.00012 4.1E-09 67.6 7.3 124 111-284 6-144 (168)
32 3mpz_A Cytidine deaminase; ssg 97.3 0.00061 2.1E-08 62.2 8.6 94 286-419 19-119 (150)
33 1ctt_A Cytidine deaminase; hyd 97.3 0.00067 2.3E-08 68.2 8.7 88 291-419 48-140 (294)
34 1ctt_A Cytidine deaminase; hyd 96.8 0.0049 1.7E-07 61.9 10.6 70 325-420 209-285 (294)
35 2c2q_A G/U mismatch-specific D 96.1 0.0051 1.8E-07 58.4 5.2 136 111-298 22-179 (199)
36 2l3f_A Uncharacterized protein 95.5 0.0078 2.7E-07 55.6 3.6 121 111-285 10-141 (166)
37 3dmo_A Cytidine deaminase; str 94.9 0.16 5.4E-06 45.6 10.1 39 325-364 32-73 (138)
38 3v4k_A DNA DC->DU-editing enzy 92.9 0.088 3E-06 50.1 4.7 99 349-483 77-188 (203)
39 3oj6_A Blasticidin-S deaminase 92.7 0.39 1.3E-05 44.0 8.5 37 325-364 51-90 (158)
40 3a7n_A UDG, uracil-DNA glycosy 91.0 1.2 3.9E-05 43.4 10.2 69 231-305 156-230 (238)
41 4eg2_A Cytidine deaminase; UMP 90.3 0.5 1.7E-05 47.4 7.1 66 325-420 74-144 (298)
42 3tr7_A UDG, uracil-DNA glycosy 84.5 3.4 0.00012 40.0 8.8 69 231-305 146-220 (232)
43 3fci_A UDG, uracil-DNA glycosy 84.4 2.6 9E-05 40.5 7.9 70 230-305 140-215 (223)
44 4eg2_A Cytidine deaminase; UMP 83.6 4.1 0.00014 40.8 9.2 91 291-419 191-288 (298)
45 2owr_A UDG, uracil-DNA glycosy 83.5 15 0.00052 35.1 12.8 81 215-305 122-207 (218)
46 3vow_A Probable DNA DC->DU-edi 77.6 1.6 5.6E-05 41.0 3.7 100 348-483 62-175 (190)
47 3uf7_A UDG, uracil-DNA glycosy 77.1 6.2 0.00021 38.3 7.7 69 231-305 141-215 (237)
48 2j8x_A Uracil-DNA glycosylase; 75.8 2.7 9.3E-05 40.6 4.9 71 231-305 143-224 (231)
49 3cxm_A Uracil-DNA glycosylase; 73.3 3.1 0.0001 41.1 4.6 69 231-305 179-254 (268)
50 1udg_A Uracil-DNA glycosylase; 67.2 10 0.00035 36.9 6.7 67 231-305 165-237 (244)
51 2boo_A UDG, uracil-DNA glycosy 63.7 12 0.00041 36.5 6.4 71 231-305 160-233 (247)
52 2eje_A General transcription f 31.8 49 0.0017 28.4 4.3 57 108-176 49-110 (114)
53 1m3w_A H10H24; four-helix bund 31.2 25 0.00086 23.0 1.9 13 99-111 6-18 (32)
54 4aty_A Terephthalate 1,2-CIS-d 27.0 37 0.0013 34.3 3.3 25 101-125 207-231 (349)
55 2eap_A Lymphocyte cytosolic pr 21.8 7.7 0.00026 32.2 -2.4 50 124-187 3-61 (90)
No 1
>1oe4_A SMUG1, single-strand selective monofunctional uracil DNA glycosylase; hydrolase, hydrolase/complex, SMUG1; HET: 3DR; 2.0A {Xenopus laevis} SCOP: c.18.1.3 PDB: 1oe5_A* 1oe6_A*
Probab=100.00 E-value=5e-80 Score=605.09 Aligned_cols=245 Identities=48% Similarity=0.898 Sum_probs=239.1
Q ss_pred hHHHHHHHHHHHHHHHhhccCCcccCCCceEEecchhhHHHHHHHHHHHHhcCCCcEEEEeecCCCccccccCcccCChh
Q psy9259 61 NDIAEGVLNIEKQLIHELTNSNITYEFPVEYVYNPLDYAFELHSKYVYKYCNSKKKILFLGMNPGPWGMVQCGIPFGEVK 140 (489)
Q Consensus 61 ~~~~~~~~~~~~~l~~~l~~~~l~f~~p~~~vyNP~~ya~~~h~~y~~ky~~~~~rvl~lGmnPGp~Gm~qTGvPFgd~~ 140 (489)
.++|++||+++++|+++|+ +|+|++||.+|||||+|||++|++||+|||++++||||||||||||||+||||||||+.
T Consensus 2 ~~~a~~~~~~~~~L~~~l~--~l~~p~~v~~vyNP~~ya~~~h~~yl~ky~~~~~riliiG~aPG~~G~~~TGvPF~D~~ 79 (247)
T 1oe4_A 2 ESPADSFLKVELELNLKLS--NLVFQDPVQYVYNPLVYAWAPHENYVQTYCKSKKEVLFLGMNPGPFGMAQTGVPFGEVN 79 (247)
T ss_dssp CCCHHHHHHHHHHHHHHHH--TCCCCTTCCEEECHHHHTHHHHHHHHHHHCSSCCSEEEEESSCCTTTHHHHSSTTCCHH
T ss_pred ccHHHHHHHHHHHHHHHhh--hcCCCCCcCeeECcHHHHHHHHHHHHHHHhCCCCCEEEEecCCCcccCcccCCCCCCHH
Confidence 5789999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcccCCCCCCcccCCCCCcCCCCCCccccchhHHHHHHHHhhCCchhhhhhhchhhccccccccccCCCCCCCCC
Q psy9259 141 AVKGFLNIEGKVNQPEKFHKDRPIKGLDCPRSEISGKRLWELASQLSDGKAADFFKHAYVHNYFPLAFVSKTATNITPAE 220 (489)
Q Consensus 141 ~vr~wlgi~~~v~~p~~ehp~rpv~g~~c~~~evSg~r~w~~~~~~~~g~~~~F~~~~fv~n~cPL~f~~~~g~n~tp~~ 220 (489)
+||+||||+++|.+|+.|||||||.||+|+++|+||+|||++|+++| |++++||+++||+|+|||+||+++|+|.||++
T Consensus 80 ~Lr~wlgi~g~v~~p~~ehpkrpv~G~~c~~~E~Sg~rlW~l~~~~~-G~~~~Fy~~~~v~Ni~PL~f~~p~G~~~t~d~ 158 (247)
T 1oe4_A 80 HVRDWLQIEGPVSKPEVEHPKRRIRGFECPQSEVSGARFWSLFKSLC-GQPETFFKHCFVHNHCPLIFMNHSGKNLTPTD 158 (247)
T ss_dssp HHHHTTCCCCCCCCCSSCCTTSCCCGGGCCSCCHHHHHHHHHHHHHH-SSHHHHHTTEEEEESCCCEEECTTCCEECGGG
T ss_pred HHHHHhcCCccccCcccccccccccCcccccccccchhHHHHHHHhh-ccHHHhccccceeeecCcccccCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999 99999999999999999999999899999999
Q ss_pred CCChhhHHHHHHHHHHHHHHHHhhcCceEEEEechHHHHHHHHHHHhcccccceEeeecCCCCCCCCCCchhhHHHHHHH
Q psy9259 221 LKNKTTIEKLNSICDKSLSDIVKHLGIETVIAIGKFAETRAEKALKSNRIFTVKVTSISHPSPRNPASNKNWVENTTKKL 300 (489)
Q Consensus 221 l~~~~~~~~l~~~c~~~L~~~i~~l~~~~vv~vG~~a~~~~~~~~~~~~~~~v~V~~L~HPSprnp~anr~W~E~a~~aL 300 (489)
+|.. |+++|+++|+++|+++|+++++++||+||+||+++++.++++++. .+++++|+||||+|+++|++|+++++++|
T Consensus 159 ~p~~-e~~~l~~~C~~~l~~~l~~l~~~~vv~IG~yA~~~l~~~v~~~~~-~~~v~~L~HPSprn~~an~~W~~~a~~~l 236 (247)
T 1oe4_A 159 LPKA-QRDTLLEICDEALCQAVRVLGVKLVIGVGRFSEQRARKALMAEGI-DVTVKGIMHPSPRNPQANKGWEGIVRGQL 236 (247)
T ss_dssp SCHH-HHHHHHHHHHHHHHHHHHHHTCSEEEEESHHHHHHHHHHHHHTTC-SCEEEEECCCCTTCGGGTTTHHHHHHHHH
T ss_pred CChH-HHHhHHHHHHHHHHHHHhccCceEEEEECHHHHHHHHHHHHhhcc-CCCeEEeCCCCCCCcccccCHHHHHHHHH
Confidence 9966 999999999999999999999999999999999999999998874 69999999999999999999999999999
Q ss_pred HhcCcccccc
Q psy9259 301 KDLGVLHYFT 310 (489)
Q Consensus 301 eEAgvL~~L~ 310 (489)
+++|+|++|+
T Consensus 237 ~~~g~~~~~~ 246 (247)
T 1oe4_A 237 LELGVLSLLT 246 (247)
T ss_dssp HHHTCHHHHC
T ss_pred HHCCcHHhhc
Confidence 9999998876
No 2
>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA processing, hydrolase, structural genomics, structural consortium, SGC; 2.80A {Homo sapiens}
Probab=99.98 E-value=1.1e-32 Score=261.49 Aligned_cols=135 Identities=36% Similarity=0.584 Sum_probs=99.8
Q ss_pred CeEEEEE--CCcEEEEeeCCCCCCCCCchHHHHHHHHHHHHHCCCcccccccceeeeeccchhhhhhhhhhhcccCcEEE
Q psy9259 325 RTLGFTV--DERSKTRGMNEVNATKNATRHAEMVCIDHIVRQYPSTYRRVFESITVIVNVEPCIMCMAALLRVFESITVI 402 (489)
Q Consensus 325 ~~VGaVi--dG~IIa~G~N~~~~~~dpt~HAE~~AI~~a~~~l~~~~r~~~~s~~l~~~~ep~~l~~~~~~~~l~g~tLY 402 (489)
+|||||+ ||+||++|+|++++..+++.|||++||++|.+.++. +.. .....++|||||
T Consensus 46 ~pVGAVIV~~g~IIa~G~N~~~~~~~~t~HAEi~AI~~a~~~~~~-~~~-------------------~~~~~l~g~tLY 105 (189)
T 3dh1_A 46 VPVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQVLDWCRQ-SGK-------------------SPSEVFEHTVLY 105 (189)
T ss_dssp CCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHHH-HCC-------------------CHHHHHTTEEEE
T ss_pred CCEEEEEEECCEEEEEEeCCCCccCCCcCcHHHHHHHHHHHHHhh-cCc-------------------ccccccCCeEEE
Confidence 5679875 999999999998888899999999999999865211 000 001237899999
Q ss_pred EecCCChhhHHHHHHcCCCEEEEEeeCCcccc--cccC---Cc--ccCCCeEEEecCCCCCCcHHHHHHHHHHhhhhcCC
Q psy9259 403 VNVEPCIMCMAALLSLNIRTIVFACSNDRFGY--NVLG---SD--EKTNYIEIVENTDDNTPKDDAVIQNIKVNSAITNP 475 (489)
Q Consensus 403 vTlEPC~MCa~AIi~sgIkrVVyg~~d~~~Gg--~il~---~~--~~~~~ieV~~gv~~~~~~~ee~~~Ll~~F~~~~np 475 (489)
||+|||+||++||+|+||+|||||+.+++.|+ +++. .. ..+|.++|..|+ +++||.+|++.||++.|+
T Consensus 106 vTlEPC~mCa~Aii~agI~rVVyg~~~p~~gg~g~~~~~~~~~l~~~gh~ieV~~Gv-----l~~e~~~Ll~~Ff~~~~~ 180 (189)
T 3dh1_A 106 VTVEPCIMCAAALRLMKIPLVVYGCQNERFGGCGSVLNIASADLPNTGRPFQCIPGY-----RAEEAVEMLKTFYKQENP 180 (189)
T ss_dssp EEECCBHHHHHHHHHHTCCEEEEEECCTTTBTBTTSCBCTTCCCTTSSCCCEEECCT-----THHHHHHHHHHHTCC---
T ss_pred EeCCChHHHHHHHHHhCCCEEEEEecCCCcccccccccchhhHHHHcCCCeEEEeCc-----cHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999875 2222 11 234569999988 899999999999999999
Q ss_pred CCCcccccc
Q psy9259 476 NTPIEKPTD 484 (489)
Q Consensus 476 ~~P~~k~k~ 484 (489)
++|.+|+|+
T Consensus 181 ~~P~~~~k~ 189 (189)
T 3dh1_A 181 NAPKSKVRK 189 (189)
T ss_dssp ---------
T ss_pred CCCCCCCCC
Confidence 999999996
No 3
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6}
Probab=99.96 E-value=2.5e-30 Score=243.44 Aligned_cols=124 Identities=21% Similarity=0.366 Sum_probs=107.2
Q ss_pred CeEEEEE--CCcEEEEeeCCCCCCCCCchHHHHHHHHHHHHHCCCcccccccceeeeeccchhhhhhhhhhhcccCcEEE
Q psy9259 325 RTLGFTV--DERSKTRGMNEVNATKNATRHAEMVCIDHIVRQYPSTYRRVFESITVIVNVEPCIMCMAALLRVFESITVI 402 (489)
Q Consensus 325 ~~VGaVi--dG~IIa~G~N~~~~~~dpt~HAE~~AI~~a~~~l~~~~r~~~~s~~l~~~~ep~~l~~~~~~~~l~g~tLY 402 (489)
.|||||+ ||+||++|+|+++...|++.|||++||++|.++++. | .++++|||
T Consensus 36 ~pVGAVIV~~g~Ii~~G~N~~~~~~d~t~HAE~~AI~~a~~~~~~-~-------------------------~l~g~tlY 89 (179)
T 2nx8_A 36 IPIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEANAHEGN-W-------------------------RLLDTTLF 89 (179)
T ss_dssp CCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTS-S-------------------------CCTTEEEE
T ss_pred CCEEEEEEECCEEEEEEECCCCCcCCCccCHHHHHHHHHHHHcCC-C-------------------------cccceEEE
Confidence 5679875 999999999999888999999999999999987653 3 37899999
Q ss_pred EecCCChhhHHHHHHcCCCEEEEEeeCCcccc-----cccCCcccCCCeEEEecCCCCCCcHHHHHHHHHHhhhhcCCCC
Q psy9259 403 VNVEPCIMCMAALLSLNIRTIVFACSNDRFGY-----NVLGSDEKTNYIEIVENTDDNTPKDDAVIQNIKVNSAITNPNT 477 (489)
Q Consensus 403 vTlEPC~MCa~AIi~sgIkrVVyg~~d~~~Gg-----~il~~~~~~~~ieV~~gv~~~~~~~ee~~~Ll~~F~~~~np~~ 477 (489)
||+|||+||++||+|+||+|||||+.+++.|+ +++.....+|+++|..|+ +++||.+|++.||++.+...
T Consensus 90 vTlEPC~mCa~ai~~agI~rVv~g~~d~~~g~~g~~~~~l~~~~~~~~~~V~~gv-----l~~e~~~l~~~f~~~~r~~~ 164 (179)
T 2nx8_A 90 VTIEPCVMCSGAIGLARIPHVIYGASNQKFGGVDSLYQILTDERLNHRVQVERGL-----LAADCANIMQTFFRQGRERK 164 (179)
T ss_dssp EEECCBHHHHHHHHHTTCCEEEEEECCTTTBTTTTSCCGGGCTTTTCCCEEEECT-----THHHHHHHHHHHHHHHHHHH
T ss_pred ECCCCcHHHHHHHHHhCCCeEEEEEeCCCCcccccHHHHhhccccCCCcEEEcCC-----CHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999764 345544557899999988 79999999999998876444
Q ss_pred Cc
Q psy9259 478 PI 479 (489)
Q Consensus 478 P~ 479 (489)
|.
T Consensus 165 ~~ 166 (179)
T 2nx8_A 165 KI 166 (179)
T ss_dssp HH
T ss_pred cc
Confidence 44
No 4
>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 PDB: 3ocq_A
Probab=99.96 E-value=2.8e-29 Score=233.96 Aligned_cols=121 Identities=22% Similarity=0.358 Sum_probs=105.1
Q ss_pred CeEEEEE--CCcEEEEeeCCCCCCCCCchHHHHHHHHHHHHHCCCcccccccceeeeeccchhhhhhhhhhhcccCcEEE
Q psy9259 325 RTLGFTV--DERSKTRGMNEVNATKNATRHAEMVCIDHIVRQYPSTYRRVFESITVIVNVEPCIMCMAALLRVFESITVI 402 (489)
Q Consensus 325 ~~VGaVi--dG~IIa~G~N~~~~~~dpt~HAE~~AI~~a~~~l~~~~r~~~~s~~l~~~~ep~~l~~~~~~~~l~g~tLY 402 (489)
.|||||+ ||+||++|+|.++...|++.|||++||++|.++++. | .+++++||
T Consensus 29 ~pVGAviV~~g~Ii~~G~N~~~~~~d~t~HAE~~Ai~~a~~~~~~-~-------------------------~l~~~tlY 82 (168)
T 1z3a_A 29 VPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQN-Y-------------------------RLIDATLY 82 (168)
T ss_dssp CCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTS-S-------------------------CCTTCEEE
T ss_pred CcEEEEEEECCEEEEEEEcccccCCCcchhHHHHHHHHHHHHcCC-C-------------------------cccccEEE
Confidence 4678875 999999999999888999999999999999987543 3 37899999
Q ss_pred EecCCChhhHHHHHHcCCCEEEEEeeCCcccc-----cccCCcccCCCeEEEecCCCCCCcHHHHHHHHHHhhhhcCCC
Q psy9259 403 VNVEPCIMCMAALLSLNIRTIVFACSNDRFGY-----NVLGSDEKTNYIEIVENTDDNTPKDDAVIQNIKVNSAITNPN 476 (489)
Q Consensus 403 vTlEPC~MCa~AIi~sgIkrVVyg~~d~~~Gg-----~il~~~~~~~~ieV~~gv~~~~~~~ee~~~Ll~~F~~~~np~ 476 (489)
||+|||+||++||+|+||+||||++.+++.|+ +++.....+|+++|..|+ +++||.+|++.||++.+..
T Consensus 83 vTlEPC~mC~~ai~~agi~rVv~g~~d~~~g~~g~~~~~l~~~~~~~~~~v~~gv-----l~~e~~~l~~~f~~~~r~~ 156 (168)
T 1z3a_A 83 VTLEPCVMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGMNHRVEITEGI-----LADECAALLSDFFRMRRQE 156 (168)
T ss_dssp EEECCCHHHHHHHHHHTCSEEEEEECCTTTCTBTTSCBCTTCTTCSSCCEEECCT-----THHHHHHHHHHHHHHHHTT
T ss_pred EcCCCcHHHHHHHHHHCcCEEEEEecCCCccccchhHHHhhccccCCCcEEEcCC-----CHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999764 345555567899999988 7999999999999886533
No 5
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2
Probab=99.96 E-value=8.3e-29 Score=228.73 Aligned_cols=119 Identities=20% Similarity=0.339 Sum_probs=104.2
Q ss_pred CeEEEEE--CCcEEEEeeCCCCCCCCCchHHHHHHHHHHHHHCCCcccccccceeeeeccchhhhhhhhhhhcccCcEEE
Q psy9259 325 RTLGFTV--DERSKTRGMNEVNATKNATRHAEMVCIDHIVRQYPSTYRRVFESITVIVNVEPCIMCMAALLRVFESITVI 402 (489)
Q Consensus 325 ~~VGaVi--dG~IIa~G~N~~~~~~dpt~HAE~~AI~~a~~~l~~~~r~~~~s~~l~~~~ep~~l~~~~~~~~l~g~tLY 402 (489)
.|||||+ ||+||++|+|.++.+.|++.|||++||++|.++++. + .+++++||
T Consensus 27 ~pVGAviv~~g~Ii~~G~N~~~~~~~~~~HAE~~Ai~~a~~~~~~-~-------------------------~l~~~tly 80 (159)
T 2b3j_A 27 VPIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIERAAKVLGS-W-------------------------RLEGCTLY 80 (159)
T ss_dssp CCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTS-S-------------------------CCTTEEEE
T ss_pred CCEEEEEEECCEEEEEEECCCCCCCCCccCHHHHHHHHHHHHcCC-C-------------------------CcceeEEE
Confidence 5679875 999999999999888899999999999999987653 3 37899999
Q ss_pred EecCCChhhHHHHHHcCCCEEEEEeeCCcccc-----cccCCcccCCCeEEEecCCCCCCcHHHHHHHHHHhhhhcC
Q psy9259 403 VNVEPCIMCMAALLSLNIRTIVFACSNDRFGY-----NVLGSDEKTNYIEIVENTDDNTPKDDAVIQNIKVNSAITN 474 (489)
Q Consensus 403 vTlEPC~MCa~AIi~sgIkrVVyg~~d~~~Gg-----~il~~~~~~~~ieV~~gv~~~~~~~ee~~~Ll~~F~~~~n 474 (489)
||+|||+||++||+|+||++|||++.+++.|+ +++.....+|+++|..|+ +++||.+|++.||++.+
T Consensus 81 vT~EPC~mC~~ai~~agi~rVv~~~~~~~~~~~g~~~~~l~~~~~~~~~~v~~gv-----l~~e~~~l~~~f~~~~r 152 (159)
T 2b3j_A 81 VTLEPCVMCAGTIVMSRIPRVVYGADDPKGGCSGSLMNLLQQSNFNHRAIVDKGV-----LKEACSTLLTTFFKNLR 152 (159)
T ss_dssp EEECCCHHHHHHHHHTTCSEEEEEECCTTTCTBTTSCBTTSCTTSSCCCEEECCT-----THHHHHHHHHHHHHHHH
T ss_pred ECCCCcHHHHHHHHHhCCCeEEEEeeCCCcccccHHHHHHhccccCCCCEEEcCC-----CHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999764 345544567899999988 79999999999998754
No 6
>2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding region, structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2
Probab=99.95 E-value=5.1e-28 Score=230.80 Aligned_cols=133 Identities=17% Similarity=0.210 Sum_probs=103.7
Q ss_pred CeEEEEE---C-CcEEEEeeCCCCCCCCCchHHHHHHHHHHHHHCCCcccccccceeeeeccchhhhhhhhhhhcccCcE
Q psy9259 325 RTLGFTV---D-ERSKTRGMNEVNATKNATRHAEMVCIDHIVRQYPSTYRRVFESITVIVNVEPCIMCMAALLRVFESIT 400 (489)
Q Consensus 325 ~~VGaVi---d-G~IIa~G~N~~~~~~dpt~HAE~~AI~~a~~~l~~~~r~~~~s~~l~~~~ep~~l~~~~~~~~l~g~t 400 (489)
.|||||+ | |+||++|+|+++...|++.|||++||++|+++++. |+. .. ..+++||
T Consensus 48 ~PvGAVIV~~~~g~Iia~G~N~~~~~~~~~~HAE~~Ai~~a~~~~~~-~~L-----------~~---------~~~~g~t 106 (197)
T 2g84_A 48 GPFAAAVFERDSGLLIAAGTNRVVPGRCSAAHAEILALSLAQAKLDT-HDL-----------SA---------DGLPACE 106 (197)
T ss_dssp CSCEEEEEETTTCBEEEEEECCTTTTTCTTCCHHHHHHHHHHHHHTC-SCT-----------TC---------TTSCCEE
T ss_pred CCEEEEEEEcCCCEEEEEEECCCCccCCCccCHHHHHHHHHHHHcCC-ccc-----------cc---------cCcCCEE
Confidence 3568864 6 99999999999988999999999999999987653 331 00 0257899
Q ss_pred EEEecCCChhhHHHHHHcCCCEEEEEeeCCcccccccC---Cc------ccCCCeEEEecCCCCCCcHHHHHHHHHHhhh
Q psy9259 401 VIVNVEPCIMCMAALLSLNIRTIVFACSNDRFGYNVLG---SD------EKTNYIEIVENTDDNTPKDDAVIQNIKVNSA 471 (489)
Q Consensus 401 LYvTlEPC~MCa~AIi~sgIkrVVyg~~d~~~Gg~il~---~~------~~~~~ieV~~gv~~~~~~~ee~~~Ll~~F~~ 471 (489)
||||+|||+||++||+|+||+|||||+.+++.|+.-+. .. ..+++++|..|+ +++||.+|++.||+
T Consensus 107 lYvTlEPC~mCa~Aii~agI~rVv~g~~d~~~~~~G~~~~~~~~~~~~~l~~~~i~V~~gv-----l~~e~~~ll~~f~~ 181 (197)
T 2g84_A 107 LVTSAEPCVMCFGAVIWSGVRSLVCAARSDDVEAIGFDEGPRPENWMGGLEARGITVTTGL-----LRDAACALLREYNA 181 (197)
T ss_dssp EEEEECCCHHHHHHHHHHCCSEEEEEECHHHHHHTTCCCCCCCTTHHHHHHHTTCEEECCT-----THHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHhCcCEEEEEecCCCccccCcccccchhHHHHHHhcCCCEEEecC-----CHHHHHHHHHHHHH
Confidence 99999999999999999999999999999987631110 00 025789999888 89999999999998
Q ss_pred hcCCCCCcccccc
Q psy9259 472 ITNPNTPIEKPTD 484 (489)
Q Consensus 472 ~~np~~P~~k~k~ 484 (489)
+. +..+.++.+.
T Consensus 182 ~~-~~~y~~~~~~ 193 (197)
T 2g84_A 182 CN-GVIYNARCGV 193 (197)
T ss_dssp HC-SSSCCTTC--
T ss_pred cC-CCCCCCCCCC
Confidence 54 5555555443
No 7
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2
Probab=99.95 E-value=4e-28 Score=226.87 Aligned_cols=117 Identities=22% Similarity=0.343 Sum_probs=102.4
Q ss_pred CeEEEEE--CCcEEEEeeCCCCCCCCCchHHHHHHHHHHHHHCCCcccccccceeeeeccchhhhhhhhhhhcccCcEEE
Q psy9259 325 RTLGFTV--DERSKTRGMNEVNATKNATRHAEMVCIDHIVRQYPSTYRRVFESITVIVNVEPCIMCMAALLRVFESITVI 402 (489)
Q Consensus 325 ~~VGaVi--dG~IIa~G~N~~~~~~dpt~HAE~~AI~~a~~~l~~~~r~~~~s~~l~~~~ep~~l~~~~~~~~l~g~tLY 402 (489)
.|||||+ ||+||++|+|.++.+.|++.|||++||++|.++++. + .+++++||
T Consensus 43 ~pVGAvIV~dg~Ii~~G~N~~~~~~d~t~HAE~~AI~~a~~~~g~-~-------------------------~l~~~tlY 96 (171)
T 1wwr_A 43 VPVGAIIVKEGEIISKAHNSVEELKDPTAHAEMLAIKEACRRLNT-K-------------------------YLEGCELY 96 (171)
T ss_dssp CCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTC-S-------------------------CCTTEEEE
T ss_pred CCEEEEEEECCEEEEEEECCCCccCCcccCHHHHHHHHHHHHcCC-C-------------------------ccCceEEE
Confidence 5779875 999999999999888999999999999999987653 3 37899999
Q ss_pred EecCCChhhHHHHHHcCCCEEEEEeeCCcccc-----cccCCcccCCCeEEEecCCCCCCcHHHHHHHHHHhhhhc
Q psy9259 403 VNVEPCIMCMAALLSLNIRTIVFACSNDRFGY-----NVLGSDEKTNYIEIVENTDDNTPKDDAVIQNIKVNSAIT 473 (489)
Q Consensus 403 vTlEPC~MCa~AIi~sgIkrVVyg~~d~~~Gg-----~il~~~~~~~~ieV~~gv~~~~~~~ee~~~Ll~~F~~~~ 473 (489)
||+|||+||++||+|+||+||||++.+++.|+ +++.....+++++|.. + +++||.+|++.||++.
T Consensus 97 vT~EPC~mC~~ai~~agi~rVv~~~~d~~~g~~g~~~~~l~~~~~~~~i~V~~-v-----l~~e~~~ll~~f~~~~ 166 (171)
T 1wwr_A 97 VTLEPCIMCSYALVLSRIEKVIFSALDKKHGGVVSVFNILDEPTLNHRVKWEY-Y-----PLEEASELLSEFFKKL 166 (171)
T ss_dssp ESSCCBHHHHHHHHHTTCSEEEESSCCTTTBTTTTSCCGGGCTTCSSCCEEEE-C-----CCHHHHHHHHHHHHHH
T ss_pred ECCCChHHHHHHHHHHCCCEEEEEecCCCccccchHHHHHhccccCCCcEEEE-e-----cHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999764 3455445678999998 7 7899999999999865
No 8
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2
Probab=99.95 E-value=4.5e-28 Score=220.11 Aligned_cols=114 Identities=18% Similarity=0.295 Sum_probs=88.3
Q ss_pred CeEEEEE--CCcEEEEeeCCCCCCCCCchHHHHHHHHHHHHHCCCcccccccceeeeeccchhhhhhhhhhhcccCcEEE
Q psy9259 325 RTLGFTV--DERSKTRGMNEVNATKNATRHAEMVCIDHIVRQYPSTYRRVFESITVIVNVEPCIMCMAALLRVFESITVI 402 (489)
Q Consensus 325 ~~VGaVi--dG~IIa~G~N~~~~~~dpt~HAE~~AI~~a~~~l~~~~r~~~~s~~l~~~~ep~~l~~~~~~~~l~g~tLY 402 (489)
.|||||+ ||+||++|+|.++.+.|++.|||++||+++.++++. + .+++++||
T Consensus 24 ~~VGAviv~~g~Ii~~G~N~~~~~~~~~~HAE~~Ai~~a~~~~~~-~-------------------------~~~~~tly 77 (144)
T 2a8n_A 24 VPIGAVLVLDGRVIARSGNRTRELNDVTAHAEIAVIRMACEALGQ-E-------------------------RLPGADLY 77 (144)
T ss_dssp CCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTC-S-------------------------CCTTCEEE
T ss_pred CCEEEEEEECCEEEEEEECCCCCCCCCcCCHHHHHHHHHHHHcCC-C-------------------------ccCCeEEE
Confidence 5679875 999999999999888999999999999999987653 2 37899999
Q ss_pred EecCCChhhHHHHHHcCCCEEEEEeeCCcccc-----cccCCcccCCCeEEEecCCCCCCcHHHHHHHHHHh
Q psy9259 403 VNVEPCIMCMAALLSLNIRTIVFACSNDRFGY-----NVLGSDEKTNYIEIVENTDDNTPKDDAVIQNIKVN 469 (489)
Q Consensus 403 vTlEPC~MCa~AIi~sgIkrVVyg~~d~~~Gg-----~il~~~~~~~~ieV~~gv~~~~~~~ee~~~Ll~~F 469 (489)
||+|||+||+++|+|+||+||||+..+++.|+ +++.....+|+++|..|+ +++||.+||+.|
T Consensus 78 ~T~ePC~mC~~ai~~~~i~rvv~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~gv-----l~~e~~~l~~~f 144 (144)
T 2a8n_A 78 VTLEPCTMCAAAISFARIRRLYYGAQDPKGGAVESGVRFFSQPTCHHAPDVYSGL-----AESESAEILRQF 144 (144)
T ss_dssp EEECCBHHHHHHHHHTTCSEEEEEECCTTTBCSSSTTCGGGSTTCCCCCEEEEC------------------
T ss_pred ECCCChHHHHHHHHHHCCCEEEEeecCCCccccchHHHHHhccccCCCcEEEeCC-----CHHHHHHHHhcC
Confidence 99999999999999999999999999999764 345545567899999988 799999999887
No 9
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A
Probab=99.95 E-value=1.1e-28 Score=229.15 Aligned_cols=118 Identities=17% Similarity=0.319 Sum_probs=98.7
Q ss_pred CeEEEEE--CCcEEEEeeCCCCCCCCCchHHHHHHHHHHHHHCCCcccccccceeeeeccchhhhhhhhhhhcccCcEEE
Q psy9259 325 RTLGFTV--DERSKTRGMNEVNATKNATRHAEMVCIDHIVRQYPSTYRRVFESITVIVNVEPCIMCMAALLRVFESITVI 402 (489)
Q Consensus 325 ~~VGaVi--dG~IIa~G~N~~~~~~dpt~HAE~~AI~~a~~~l~~~~r~~~~s~~l~~~~ep~~l~~~~~~~~l~g~tLY 402 (489)
.|||||+ ||+||++|+|++..+.|++.|||++||++|.++++. + .+++||||
T Consensus 32 ~pVGAVIV~~g~Ii~~G~N~~~~~~d~~~HAE~~AI~~a~~~~~~-~-------------------------~l~g~tlY 85 (164)
T 1wkq_A 32 GPFGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRKACKVLGA-Y-------------------------QLDDCILY 85 (164)
T ss_dssp SSCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTS-S-------------------------SCTTEEEE
T ss_pred CCEEEEEEECCEEEEEEecCCcCCCCcccCHHHHHHHHHHHHcCC-C-------------------------CcCceEEE
Confidence 5678875 999999999999888899999999999999987653 3 37899999
Q ss_pred EecCCChhhHHHHHHcCCCEEEEEeeCCcccc---------cccCCcccCCCeEEEecCCCCCCcHHHHHHHHHHhhhhc
Q psy9259 403 VNVEPCIMCMAALLSLNIRTIVFACSNDRFGY---------NVLGSDEKTNYIEIVENTDDNTPKDDAVIQNIKVNSAIT 473 (489)
Q Consensus 403 vTlEPC~MCa~AIi~sgIkrVVyg~~d~~~Gg---------~il~~~~~~~~ieV~~gv~~~~~~~ee~~~Ll~~F~~~~ 473 (489)
||+|||+||++||+|+||+||||++.+++.|+ +++.....++.++| .|+ +++||.+||+.||++.
T Consensus 86 vT~EPC~mCa~ai~~agI~rVv~g~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~v-~gv-----~~~e~~~ll~~f~~~~ 159 (164)
T 1wkq_A 86 TSCEPCPMCLGAIYWARPKAVFYAAEHTDAAEAGFDDSFIYKEIDKPAEERTIPF-YQV-----TLTEHLSPFQAWRNFA 159 (164)
T ss_dssp EEECCCHHHHHHHHHHCCSEEEEEECHHHHHHTTCSHHHHHHHHTSCGGGSSSCE-EEC-----CCTTTTHHHHHHHHCT
T ss_pred EeCCChHHHHHHHHHHCCCEEEEEEcCCCccccCcchHHHHHHhcchhhcCCeEE-Eec-----CHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999998653 12322334567777 456 7899999999999755
Q ss_pred C
Q psy9259 474 N 474 (489)
Q Consensus 474 n 474 (489)
+
T Consensus 160 ~ 160 (164)
T 1wkq_A 160 N 160 (164)
T ss_dssp T
T ss_pred C
Confidence 3
No 10
>1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A {Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A 1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A
Probab=99.92 E-value=4.6e-26 Score=210.89 Aligned_cols=111 Identities=23% Similarity=0.260 Sum_probs=94.1
Q ss_pred CeEEEE-E---CCcEEEEeeCCCCCCCCCchHHHHHHHHHHHHHCCCcccccccceeeeeccchhhhhhhhhhhcccCcE
Q psy9259 325 RTLGFT-V---DERSKTRGMNEVNATKNATRHAEMVCIDHIVRQYPSTYRRVFESITVIVNVEPCIMCMAALLRVFESIT 400 (489)
Q Consensus 325 ~~VGaV-i---dG~IIa~G~N~~~~~~dpt~HAE~~AI~~a~~~l~~~~r~~~~s~~l~~~~ep~~l~~~~~~~~l~g~t 400 (489)
.||||| + ||+||++|+|.++.+.+++.|||++||++|.+. + . ..+++++
T Consensus 34 ~pVGAviVd~~~g~Ii~~G~N~~~~~~~~t~HAE~~Ai~~a~~~-~-~-------------------------~~~~~~t 86 (161)
T 1p6o_A 34 VPIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEISTLENCGRL-E-G-------------------------KVYKDTT 86 (161)
T ss_dssp CCCEEEEEETTTCCEEEEEECCHHHHTCSSCCHHHHHHHHHCSC-C-H-------------------------HHHTTEE
T ss_pred CCEEEEEEEecCCEEEEEEECCCCCCCCcccCHHHHHHHHHHHh-C-C-------------------------ccccccc
Confidence 467885 3 799999999999878899999999999998643 1 0 1368999
Q ss_pred EEEecCCChhhHHHHHHcCCCEEEEEeeCCccc-c-cccCCcccCCCeEEEecCCCCCCcHHHHHHHHHHhhhh
Q psy9259 401 VIVNVEPCIMCMAALLSLNIRTIVFACSNDRFG-Y-NVLGSDEKTNYIEIVENTDDNTPKDDAVIQNIKVNSAI 472 (489)
Q Consensus 401 LYvTlEPC~MCa~AIi~sgIkrVVyg~~d~~~G-g-~il~~~~~~~~ieV~~gv~~~~~~~ee~~~Ll~~F~~~ 472 (489)
||||+|||+||+++|+|+||+||||+..+++.| + ++|. .++++|.. + +++||.+|++.||++
T Consensus 87 lYvT~EPC~mC~~ai~~agi~rVv~g~~~~~~g~~~~~l~----~~gi~v~~-~-----~~~e~~~l~~~f~~~ 150 (161)
T 1p6o_A 87 LYTTLSPCDMCTGAIIMYGIPRCVVGENVNFKSKGEKYLQ----TRGHEVVV-V-----DDERCKKIMKQFIDE 150 (161)
T ss_dssp EEEEECCCHHHHHHHHHHTCCEEEEEESSSCCCTHHHHHH----HTTCEEEE-C-----CCHHHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHhCCCEEEEEecCCCCccHHHHHH----hcCCEEEE-e-----cHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999876 2 4443 37899986 6 689999999999975
No 11
>2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deami amino-6-(5-phosphoribosylamino)uracil...; oxidoreductase, structural genomics; HET: NDP; 1.80A {Thermotoga maritima} SCOP: c.71.1.2 c.97.1.2
Probab=99.91 E-value=9.7e-25 Score=225.11 Aligned_cols=143 Identities=17% Similarity=0.238 Sum_probs=116.3
Q ss_pred hhHHHHHHHHhcCccccccccccccccCCCCCCCeEEEEE--CCcEEEEeeCCCCCCCCCchHHHHHHHHHHHHHCCCcc
Q psy9259 292 WVENTTKKLKDLGVLHYFTSESQNIPNHEHCNHRTLGFTV--DERSKTRGMNEVNATKNATRHAEMVCIDHIVRQYPSTY 369 (489)
Q Consensus 292 W~E~a~~aLeEAgvL~~L~~ea~evP~~s~C~~~~VGaVi--dG~IIa~G~N~~~~~~dpt~HAE~~AI~~a~~~l~~~~ 369 (489)
+..+|..++++|.. . .+++|..++||||+ ||+||++|+|+. +++.|||++||++|.+ .+.
T Consensus 14 ~~~~m~~al~lA~~-----~------~~~~~~~~~vGaviv~~g~ii~~g~n~~----~~~~HAE~~Ai~~a~~-~~~-- 75 (360)
T 2hxv_A 14 YETFMKRAIELAKK-----G------LGRVNPNPPVGAVVVKDGRIIAEGFHPY----FGGPHAERMAIESARK-KGE-- 75 (360)
T ss_dssp HHHHHHHHHHHHHT-----T------TTTSTTSCCCEEEEEETTEEEEEEECCS----TTSCCHHHHHHHHHHH-TTC--
T ss_pred HHHHHHHHHHHHHH-----h------ccccCCCCCEEEEEEECCEEEEEEeCCC----CCCcCHHHHHHHHHHh-cCC--
Confidence 66777777777753 1 12334457899975 999999999986 5899999999999975 221
Q ss_pred cccccceeeeeccchhhhhhhhhhhcccCcEEEEecCCC------hhhHHHHHHcCCCEEEEEeeCCcc--c--ccccCC
Q psy9259 370 RRVFESITVIVNVEPCIMCMAALLRVFESITVIVNVEPC------IMCMAALLSLNIRTIVFACSNDRF--G--YNVLGS 439 (489)
Q Consensus 370 r~~~~s~~l~~~~ep~~l~~~~~~~~l~g~tLYvTlEPC------~MCa~AIi~sgIkrVVyg~~d~~~--G--g~il~~ 439 (489)
.++|||||||+||| +||++||+|+||+||||++.|++. | ...+.
T Consensus 76 -------------------------~~~g~tlYvTlEPC~h~g~t~~C~~ai~~agi~rVv~~~~d~~~~~g~g~~~l~- 129 (360)
T 2hxv_A 76 -------------------------DLRGATLIVTLEPCDHHGKTPPCTDLIIESGIKTVVIGTRDPNPVSGNGVEKFR- 129 (360)
T ss_dssp -------------------------CCTTCEEEEEECCCCSCSSSCCHHHHHHHHTCCEEEEEECCCCGGGCCHHHHHH-
T ss_pred -------------------------CcCCcEEEEecCcccccCCCHHHHHHHHHhCCCEEEEEecCchhhhhhHHHHHH-
Confidence 27899999999999 799999999999999999999875 2 23443
Q ss_pred cccCCCeEEEecCCCCCCcHHHHHHHHHHhhhhcCCCCCcccccccc
Q psy9259 440 DEKTNYIEIVENTDDNTPKDDAVIQNIKVNSAITNPNTPIEKPTDGI 486 (489)
Q Consensus 440 ~~~~~~ieV~~gv~~~~~~~ee~~~Ll~~F~~~~np~~P~~k~k~~~ 486 (489)
.++++|..|+ +++||.+|++.||++.+..+|+...|.++
T Consensus 130 ---~~gi~v~~g~-----l~~e~~~l~~~f~~~~~~~rP~V~lk~A~ 168 (360)
T 2hxv_A 130 ---NHGIEVIEGV-----LEEEVKKLCEFFITYVTKKRPFVALKYAS 168 (360)
T ss_dssp ---TTTCEEEECT-----THHHHHHHTHHHHHHHHHSSCEEEEEEEE
T ss_pred ---hCCcEEEECC-----ccccchhccceeeeccccchhhheeehhh
Confidence 3789999988 79999999999999888889998877654
No 12
>2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase domain and reductase domain, hydrolase, oxidoreductase; 2.41A {Bacillus subtilis} SCOP: c.71.1.2 c.97.1.2 PDB: 2d5n_A* 3ex8_A*
Probab=99.90 E-value=2.4e-24 Score=223.19 Aligned_cols=121 Identities=17% Similarity=0.183 Sum_probs=104.2
Q ss_pred CCCCeEEEEE--CCcEEEEeeCCCCCCCCCchHHHHHHHHHHHHHCCCcccccccceeeeeccchhhhhhhhhhhcccCc
Q psy9259 322 CNHRTLGFTV--DERSKTRGMNEVNATKNATRHAEMVCIDHIVRQYPSTYRRVFESITVIVNVEPCIMCMAALLRVFESI 399 (489)
Q Consensus 322 C~~~~VGaVi--dG~IIa~G~N~~~~~~dpt~HAE~~AI~~a~~~l~~~~r~~~~s~~l~~~~ep~~l~~~~~~~~l~g~ 399 (489)
|..++||||+ ||+||++|||+. +++.|||++||++|.+. ++||
T Consensus 33 ~~~~~vGaviv~~g~ii~~g~n~~----~~~~HAE~~Ai~~a~~~-------------------------------~~g~ 77 (373)
T 2b3z_A 33 ESNPLVGAVVVKDGQIVGMGAHLK----YGEAHAEVHAIHMAGAH-------------------------------AEGA 77 (373)
T ss_dssp TTSCCCEEEEESSSSEEEEEECCS----TTSCCHHHHHHHHHGGG-------------------------------GTTC
T ss_pred CCCCcEEEEEEECCEEEEEEeCCC----CCCcCHHHHHHHHhhHh-------------------------------cCCe
Confidence 3447899985 899999999986 58999999999998531 6799
Q ss_pred EEEEecCCC------hhhHHHHHHcCCCEEEEEeeCCcccc-----cccCCcccCCCeEEEecCCCCCCcHHHHHHHHHH
Q psy9259 400 TVIVNVEPC------IMCMAALLSLNIRTIVFACSNDRFGY-----NVLGSDEKTNYIEIVENTDDNTPKDDAVIQNIKV 468 (489)
Q Consensus 400 tLYvTlEPC------~MCa~AIi~sgIkrVVyg~~d~~~Gg-----~il~~~~~~~~ieV~~gv~~~~~~~ee~~~Ll~~ 468 (489)
|||||+||| +||++||+++||+||||++.|++.+. .+|. .++++|..|+ +++||.+|++.
T Consensus 78 tlyvTlePC~~~G~t~~C~~ai~~agi~rVv~~~~d~~~~~~g~~~~~l~----~~gi~v~~g~-----l~~e~~~l~~~ 148 (373)
T 2b3z_A 78 DIYVTLEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMMK----EAGIEVREGI-----LADQAERLNEK 148 (373)
T ss_dssp EEEESSCCCCCCSSSCCHHHHHHHHTCCEEEESSCCSCTTTTTHHHHHHH----TTTCEEEECT-----THHHHHHHTHH
T ss_pred EEEEeCCCccCcCCChHHHHHHHHhCCCEEEEEecccchhhhhHHHHHHH----hCCeEEEeCC-----cccccccccce
Confidence 999999999 89999999999999999999998642 3443 3789999988 79999999999
Q ss_pred hhhhcCCCCCcccccccc
Q psy9259 469 NSAITNPNTPIEKPTDGI 486 (489)
Q Consensus 469 F~~~~np~~P~~k~k~~~ 486 (489)
||++.+..+|+..-|.++
T Consensus 149 f~~~~~~~rP~V~lk~A~ 166 (373)
T 2b3z_A 149 FLHFMRTGLPYVTLKAAA 166 (373)
T ss_dssp HHHHHHHSSCEEEEEEEE
T ss_pred eeeeccccchhheeeeee
Confidence 999988889988877654
No 13
>2g6v_A Riboflavin biosynthesis protein RIBD; RIBD APO structure, structural genomics, structural proteomi europe, spine, hydrolase, oxidoreductase; 2.60A {Escherichia coli} PDB: 2obc_A* 2o7p_A*
Probab=99.89 E-value=9.5e-24 Score=220.70 Aligned_cols=121 Identities=17% Similarity=0.177 Sum_probs=103.2
Q ss_pred CCCCeEEEEE--CCcEEEEeeCCCCCCCCCchHHHHHHHHHHHHHCCCcccccccceeeeeccchhhhhhhhhhhcccCc
Q psy9259 322 CNHRTLGFTV--DERSKTRGMNEVNATKNATRHAEMVCIDHIVRQYPSTYRRVFESITVIVNVEPCIMCMAALLRVFESI 399 (489)
Q Consensus 322 C~~~~VGaVi--dG~IIa~G~N~~~~~~dpt~HAE~~AI~~a~~~l~~~~r~~~~s~~l~~~~ep~~l~~~~~~~~l~g~ 399 (489)
|..++||||+ ||+||++|+|+. +++.|||++||++|.+. ++||
T Consensus 49 ~~~~~vGaviv~~g~ii~~g~n~~----~g~~HAE~~Ai~~a~~~-------------------------------~~g~ 93 (402)
T 2g6v_A 49 HPNPNVGCVIVKDGEIVGEGYHQR----AGEPHAEVHALRMAGEK-------------------------------AKGA 93 (402)
T ss_dssp TTSCCCEEEEEETTEEEEEEECCC----TTSCCHHHHHHHHHGGG-------------------------------GGSS
T ss_pred CCCCCEEEEEEECCEEEEEEeCCC----CCccHHHHHHHHHhhHh-------------------------------cCCe
Confidence 4447899985 999999999986 58999999999998532 6799
Q ss_pred EEEEecCCC------hhhHHHHHHcCCCEEEEEeeCCccc-----ccccCCcccCCCeEEEecCCCCCCcHHHHHHHHHH
Q psy9259 400 TVIVNVEPC------IMCMAALLSLNIRTIVFACSNDRFG-----YNVLGSDEKTNYIEIVENTDDNTPKDDAVIQNIKV 468 (489)
Q Consensus 400 tLYvTlEPC------~MCa~AIi~sgIkrVVyg~~d~~~G-----g~il~~~~~~~~ieV~~gv~~~~~~~ee~~~Ll~~ 468 (489)
|||||+||| +||++||+|+||+||||++.+++.+ ..+|. .++|+|..|+ +++||.+|++.
T Consensus 94 tlyvt~ePC~h~G~tp~C~~ai~~agi~rVv~~~~~~~~~~~g~g~~~l~----~~gi~v~~g~-----l~~e~~~l~~~ 164 (402)
T 2g6v_A 94 TAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQ----QAGIDVSHGL-----MMSEAEQLNKG 164 (402)
T ss_dssp CEEESSCCC-------CCHHHHHHTTCSCEEESSCCCSCSSSTTHHHHHH----HTTCCEEECT-----TTTHHHHHTHH
T ss_pred EEEEeCCCcCCCCCchHHHHHHHHhCCCEEEEEecCCCccccchHHHHHH----hCCcEEEeCC-----cchhhHHHhhh
Confidence 999999999 7999999999999999999988753 13443 3789999988 78999999999
Q ss_pred hhhhcCCCCCcccccccc
Q psy9259 469 NSAITNPNTPIEKPTDGI 486 (489)
Q Consensus 469 F~~~~np~~P~~k~k~~~ 486 (489)
||++.+..+|+...|.++
T Consensus 165 f~~~~~~~rP~V~~k~A~ 182 (402)
T 2g6v_A 165 FLKRMRTGFPYIQLKLGA 182 (402)
T ss_dssp HHHHHHSSSCEEEEEEEE
T ss_pred hhhccccccchheeeeee
Confidence 999999999998887664
No 14
>1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN; 2.20A {Enterobacteria phage T4} SCOP: c.97.1.2
Probab=99.87 E-value=1.3e-22 Score=192.40 Aligned_cols=106 Identities=23% Similarity=0.338 Sum_probs=84.4
Q ss_pred CCCCeEEEEE--CCcEEEEeeCCCCCCC----------------------------------------------------
Q psy9259 322 CNHRTLGFTV--DERSKTRGMNEVNATK---------------------------------------------------- 347 (489)
Q Consensus 322 C~~~~VGaVi--dG~IIa~G~N~~~~~~---------------------------------------------------- 347 (489)
|.+.+||||+ ||+||++|+|.++...
T Consensus 19 ~~~~~VGAVIV~dg~Iia~G~N~~~~g~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 98 (193)
T 1vq2_A 19 CCSWKVGAVIEKNGRIISTGYNGSPAGGVNCCDYAAEQGWLLNKPKHAIIQGHKPECVSFGSTDRFVLAKEHRSAHSEWS 98 (193)
T ss_dssp CSSBCCEEEEEETTEEEEEEECBCCTTSCCHHHHHHHHTCEEEC--------------------CEEECGGGHHHHHHHH
T ss_pred CCCCCEEEEEEECCEEEEEEeCCCCCCCCCcchhhcccccccccccccccccccccccccccccccccchhhcccccccc
Confidence 4457899975 9999999999987531
Q ss_pred -CCchHHHHHHHHHHHHHCCCcccccccceeeeeccchhhhhhhhhhhcccCcEEEEecCCChhhHHHHHHcCCCEEEEE
Q psy9259 348 -NATRHAEMVCIDHIVRQYPSTYRRVFESITVIVNVEPCIMCMAALLRVFESITVIVNVEPCIMCMAALLSLNIRTIVFA 426 (489)
Q Consensus 348 -dpt~HAE~~AI~~a~~~l~~~~r~~~~s~~l~~~~ep~~l~~~~~~~~l~g~tLYvTlEPC~MCa~AIi~sgIkrVVyg 426 (489)
+++.|||++||.+|.+.. . +++|+|||||+|||+||+++|+++||+||||+
T Consensus 99 ~~~~~HAE~~AI~~a~~~g-~---------------------------~~~g~tLYvT~ePC~~Ca~aIi~aGI~rVvy~ 150 (193)
T 1vq2_A 99 SKNEIHAELNAILFAAENG-S---------------------------SIEGATMYVTLSPCPDCAKAIAQSGIKKLVYC 150 (193)
T ss_dssp HHHCBCHHHHHHHHHHHHT-C---------------------------CCTTCEEEEEECCCHHHHHHHHHHTCCEEEEE
T ss_pred CCCCCCHHHHHHHHHHhcC-C---------------------------CcCCeEEEEeCCCcHHHHHHHHHhCCCEEEEe
Confidence 247899999999998762 1 27899999999999999999999999999999
Q ss_pred eeCCcccc---cccCCcccCCCeEEEecCCCCCCcHHHHHHH
Q psy9259 427 CSNDRFGY---NVLGSDEKTNYIEIVENTDDNTPKDDAVIQN 465 (489)
Q Consensus 427 ~~d~~~Gg---~il~~~~~~~~ieV~~gv~~~~~~~ee~~~L 465 (489)
.++++.++ .+|.. .+|+|.. + ..+++.+|
T Consensus 151 ~~~~~~~~~~~~~l~~----aGI~v~~-~-----~~~~~~~~ 182 (193)
T 1vq2_A 151 ETYDKNKPGWDDILRN----AGIEVFN-V-----PKKNLNKL 182 (193)
T ss_dssp ECCTTCCTTTTHHHHH----TTCEEEE-C-----CGGGCCSS
T ss_pred cCCCCcchHHHHHHHH----CCCEEEE-e-----CHHHHHHh
Confidence 98888654 24443 6789887 5 45555543
No 15
>2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine metabolism, nucleotide biosynthesis, zinc, hexamer, hydrolase, metal-binding, phosphoprotein; 2.10A {Homo sapiens}
Probab=99.86 E-value=5.2e-23 Score=193.40 Aligned_cols=127 Identities=13% Similarity=0.175 Sum_probs=92.6
Q ss_pred hhhH-HHHHHHHhcCccccccccccccccCCCCCCCeEEEEE---CCcEEEEeeCCCCCC------------CCC-----
Q psy9259 291 NWVE-NTTKKLKDLGVLHYFTSESQNIPNHEHCNHRTLGFTV---DERSKTRGMNEVNAT------------KNA----- 349 (489)
Q Consensus 291 ~W~E-~a~~aLeEAgvL~~L~~ea~evP~~s~C~~~~VGaVi---dG~IIa~G~N~~~~~------------~dp----- 349 (489)
.|.+ +|..+++.|.. +.|..++||||+ ||+||++|+|..+.. +++
T Consensus 11 ~~d~~~M~~A~~~A~~--------------s~~p~~~VGAvIV~~dg~Iia~G~N~~~~~~~d~~~~~~~~~g~p~~~~~ 76 (178)
T 2w4l_A 11 EWPEYFMAVAFLSAQR--------------SKDPNSQVGACIVNSENKIVGIGYNGMPNGCSDDVLPWRRTAENKLDTKY 76 (178)
T ss_dssp CHHHHHHHHHHHHHTT--------------CCCSSCCCEEEEECTTSCEEEEEESBCCTTCCTTTSCCCSCCSSGGGSST
T ss_pred HHHHHHHHHHHHHHHh--------------cCCCCCCEEEEEEecCCEEEEEEECCCCcCccccccccccccCCcccccc
Confidence 4866 45555655542 123347899974 799999999987642 343
Q ss_pred --chHHHHHHHHHHHHHCCCcccccccceeeeeccchhhhhhhhhhhcccCcEEEEecCCChhhHHHHHHcCCCEEEEEe
Q psy9259 350 --TRHAEMVCIDHIVRQYPSTYRRVFESITVIVNVEPCIMCMAALLRVFESITVIVNVEPCIMCMAALLSLNIRTIVFAC 427 (489)
Q Consensus 350 --t~HAE~~AI~~a~~~l~~~~r~~~~s~~l~~~~ep~~l~~~~~~~~l~g~tLYvTlEPC~MCa~AIi~sgIkrVVyg~ 427 (489)
+.|||++||++|.. + .++|++||||+|||.||+++|+++||+||||+.
T Consensus 77 ~~t~HAE~~AI~~a~g-----~-------------------------~~~g~tlYvTlePC~~Ca~aIi~agI~rVVy~~ 126 (178)
T 2w4l_A 77 PYVCHAELNAIMNKNL-----T-------------------------DVKGCSMYVALFPCNECAKLIIQAGIKEVIFMS 126 (178)
T ss_dssp TTCBCHHHHHHHC----------------------------------CCTTCEEEEEECCCHHHHHHHHHTTCCEEEEEE
T ss_pred CCcCCHHHHHHHHhcC-----C-------------------------CccccEEEEeCCcHHHHHHHHHHHCCCEEEEEe
Confidence 78999999998742 1 268999999999999999999999999999998
Q ss_pred e---CCcc---cccccCCcccCCCeEEEecCCCCCCcHHHHHHHHHHhhhh
Q psy9259 428 S---NDRF---GYNVLGSDEKTNYIEIVENTDDNTPKDDAVIQNIKVNSAI 472 (489)
Q Consensus 428 ~---d~~~---Gg~il~~~~~~~~ieV~~gv~~~~~~~ee~~~Ll~~F~~~ 472 (489)
. ++.. |..+|.. ++|+|.. +++++.+|+..|+.+
T Consensus 127 ~~~~d~~~~~~~~~~L~~----aGI~V~~-------~~~~~~~l~~~f~~~ 166 (178)
T 2w4l_A 127 DKYHDSDEATAARLLFNM----AGVTFRK-------FIPKCSKIVIDFDSI 166 (178)
T ss_dssp CTTTTSHHHHHHHHHHHH----HTCEEEE-------CCCSCSEEEEEGGGC
T ss_pred ccCCCCcchHHHHHHHHH----CCCEEEE-------ccHHHHHHHHHHHhh
Confidence 7 4432 2234443 6788886 356777888888765
No 16
>2hvw_A Deoxycytidylate deaminase; 3-layer (alpha-beta)-sandwich, protein-liand complex, hydrolase; HET: DCP DDN; 1.67A {Streptococcus mutans} PDB: 2hvv_A*
Probab=99.86 E-value=9.3e-22 Score=185.81 Aligned_cols=97 Identities=22% Similarity=0.303 Sum_probs=80.2
Q ss_pred CCeEEEEE--CCcEEEEeeCCCCCC---------------CCCchHHHHHHHHHHHHHCCCcccccccceeeeeccchhh
Q psy9259 324 HRTLGFTV--DERSKTRGMNEVNAT---------------KNATRHAEMVCIDHIVRQYPSTYRRVFESITVIVNVEPCI 386 (489)
Q Consensus 324 ~~~VGaVi--dG~IIa~G~N~~~~~---------------~dpt~HAE~~AI~~a~~~l~~~~r~~~~s~~l~~~~ep~~ 386 (489)
..+||||+ ||+||++|+|.+... .+++.|||++||++|.++. +
T Consensus 60 ~~~VGAVIV~dg~Iia~G~N~~~~~~~~c~d~g~~~~~~~~~~t~HAE~~AI~~A~~~g---~----------------- 119 (184)
T 2hvw_A 60 RAYVGAVLVKNNRIIATGYNGGVADTDNCDDVGHEMEDGHCIRTVHAEMNALIQCAKEG---I----------------- 119 (184)
T ss_dssp TCCCEEEEEETTEEEEEEECEESTTSCCHHHHCCCEETTEECSEECHHHHHHHHHHHHT---C-----------------
T ss_pred CCCEEEEEEECCEEEEEEECCCcccccccccccccccccccCCccCHHHHHHHHHHHcC---C-----------------
Confidence 47889975 999999999987643 2779999999999998762 1
Q ss_pred hhhhhhhhcccCcEEEEecCCChhhHHHHHHcCCCEEEEEeeCCccc--ccccCCcccCCCeEEEecC
Q psy9259 387 MCMAALLRVFESITVIVNVEPCIMCMAALLSLNIRTIVFACSNDRFG--YNVLGSDEKTNYIEIVENT 452 (489)
Q Consensus 387 l~~~~~~~~l~g~tLYvTlEPC~MCa~AIi~sgIkrVVyg~~d~~~G--g~il~~~~~~~~ieV~~gv 452 (489)
.+++++||||+|||+||+++|+|+||+||||+..+++.. ..+|.. ++|+|..+.
T Consensus 120 --------~l~g~tlYvTlEPC~mCa~aIi~agI~rVVy~~~~~~~~~~~~~L~~----aGIeV~~~~ 175 (184)
T 2hvw_A 120 --------SANNTEIYVTHFPCINCTKALLQAGVKKITYNTAYRIHPFAIELMTQ----KEVEYVQHD 175 (184)
T ss_dssp --------CCTTEEEEEEECCCHHHHHHHHHHTEEEEEEEECCSCCHHHHHHHHH----HTCEEEECC
T ss_pred --------CceeEEEEECCCCHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHH----CCCEEEEec
Confidence 278999999999999999999999999999999987642 234543 678988765
No 17
>3g8q_A Predicted RNA-binding protein, contains thump domain; cytidine deaminase, ferredoxin-like domain; 2.40A {Methanopyrus kandleri}
Probab=99.77 E-value=1.8e-19 Score=173.96 Aligned_cols=69 Identities=20% Similarity=0.331 Sum_probs=60.3
Q ss_pred CeEEEEE--CCcEEEEeeCCCCCCCCCchHHHHHHHHHHHHHCCCcccccccceeeeeccchhhhhhhhhhhcccCcEEE
Q psy9259 325 RTLGFTV--DERSKTRGMNEVNATKNATRHAEMVCIDHIVRQYPSTYRRVFESITVIVNVEPCIMCMAALLRVFESITVI 402 (489)
Q Consensus 325 ~~VGaVi--dG~IIa~G~N~~~~~~dpt~HAE~~AI~~a~~~l~~~~r~~~~s~~l~~~~ep~~l~~~~~~~~l~g~tLY 402 (489)
++||||+ ||+||++|. +++.|||++||+ . + .++|||||
T Consensus 22 PpVGAVIVkDGeIIA~Ge-------~gTaHAEInAIr----g----~-------------------------~L~GaTLY 61 (278)
T 3g8q_A 22 RTVTAALLEGGEIVAVEE-------ADDEHAERKLVR----R----H-------------------------DVEGKVVF 61 (278)
T ss_dssp SSCEEEEEETTEEEEEEE-------CSSSCHHHHHHH----H----S-------------------------CCTTCEEE
T ss_pred CCEEEEEEECCEEEEecC-------CCCCCHHHHHhC----C----C-------------------------CCCCcEEE
Confidence 7899975 999999992 289999999997 1 1 26799999
Q ss_pred EecCCChhhHHHHHHcCCCEEEEEeeCCccc
Q psy9259 403 VNVEPCIMCMAALLSLNIRTIVFACSNDRFG 433 (489)
Q Consensus 403 vTlEPC~MCa~AIi~sgIkrVVyg~~d~~~G 433 (489)
||+|||+||++||+|+||+|||||+.+...|
T Consensus 62 VTLEPC~MCAgAII~AGIkRVVYGa~~~G~G 92 (278)
T 3g8q_A 62 VTARPCLYCARELAEAGVAGVVYLGRGRGLG 92 (278)
T ss_dssp ESSCCCHHHHHHHHTTTCCEEEEEECSSCCH
T ss_pred EeCCchHHHHHHHHHhCCCEEEEEecCCChh
Confidence 9999999999999999999999999876554
No 18
>2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} PDB: 2rpz_A
Probab=99.74 E-value=2.9e-18 Score=162.62 Aligned_cols=114 Identities=17% Similarity=0.214 Sum_probs=88.6
Q ss_pred CcEEEEeeCCCCCCCCCchHHHHHHHHHHHHHCCCcccccccceeeeeccchhhhhhhhhhhcccCcEEEEecCCChhhH
Q psy9259 333 ERSKTRGMNEVNATKNATRHAEMVCIDHIVRQYPSTYRRVFESITVIVNVEPCIMCMAALLRVFESITVIVNVEPCIMCM 412 (489)
Q Consensus 333 G~IIa~G~N~~~~~~dpt~HAE~~AI~~a~~~l~~~~r~~~~s~~l~~~~ep~~l~~~~~~~~l~g~tLYvTlEPC~MCa 412 (489)
+.||++|+|+. .+++.|||++||++++++++.+ ...++|||||+|||+||+
T Consensus 48 ~~ii~~G~~~~---~~~~~HAE~~Ai~~a~~~l~~~--------------------------~~~g~TlYvTlePC~~Ca 98 (190)
T 2nyt_A 48 QVQASRGYLED---EHAAAHAEEAFFNTILPAFDPA--------------------------LRYNVTWYVSSSPCAACA 98 (190)
T ss_pred CCeEEEEECCC---CCCCcCHHHHHHHHHHHhcCcc--------------------------ccCCeEEEEEcChHHHHH
Confidence 67999999986 4799999999999998654321 123999999999999999
Q ss_pred HHHHHc-----CCCEEEEEeeCCcc-------cccccCCcccCCCeEEEecCCCCCCcHHHHHHHHHHhhh-hcC---CC
Q psy9259 413 AALLSL-----NIRTIVFACSNDRF-------GYNVLGSDEKTNYIEIVENTDDNTPKDDAVIQNIKVNSA-ITN---PN 476 (489)
Q Consensus 413 ~AIi~s-----gIkrVVyg~~d~~~-------Gg~il~~~~~~~~ieV~~gv~~~~~~~ee~~~Ll~~F~~-~~n---p~ 476 (489)
++|+++ ||++|||++.++.. |...|. .++|+|.. + ..++....+..|.. ... |+
T Consensus 99 ~aIi~al~~~~gI~rVV~~~~d~~~~~p~~~~g~~~L~----~aGI~V~~-~-----~~~e~~~~w~~fv~~~~~~~~pf 168 (190)
T 2nyt_A 99 DRIIKTLSKTKNLRLLILVGRLFMWEEPEIQAALKKLK----EAGCKLRI-M-----KPQDFEYVWQNFVEQEEGESKAF 168 (190)
T ss_pred HHHHHhhhhcCCccEEEEEeecCCcCChHHHHHHHHHH----HCCCEEEE-e-----cHHHHHHHHHHHHHccCCcCCcc
Confidence 999999 99999999987632 223443 26788875 2 35577888888887 567 99
Q ss_pred CCccccccc
Q psy9259 477 TPIEKPTDG 485 (489)
Q Consensus 477 ~P~~k~k~~ 485 (489)
.||++.+..
T Consensus 169 ~~W~~l~~~ 177 (190)
T 2nyt_A 169 QPWEDIQEN 177 (190)
T ss_pred HhHHhchHh
Confidence 999887653
No 19
>3ikb_A Uncharacterized conserved protein; APC63946, streptococcus mutans UA159, structural genomics, PSI-2, protein structure initiative; HET: FLC; 1.67A {Streptococcus mutans}
Probab=99.71 E-value=2.5e-18 Score=163.87 Aligned_cols=149 Identities=17% Similarity=0.313 Sum_probs=117.1
Q ss_pred hcCCCcEEEEeecCCCccccccCcccCChh--hhhhhhcccCCCCCCcccCCCCCcCCCCCCccccchhHHHHHHHHhhC
Q psy9259 111 CNSKKKILFLGMNPGPWGMVQCGIPFGEVK--AVKGFLNIEGKVNQPEKFHKDRPIKGLDCPRSEISGKRLWELASQLSD 188 (489)
Q Consensus 111 ~~~~~rvl~lGmnPGp~Gm~qTGvPFgd~~--~vr~wlgi~~~v~~p~~ehp~rpv~g~~c~~~evSg~r~w~~~~~~~~ 188 (489)
++..+||||||.+||... ..||+||.|.+ .|+.||||+.+.
T Consensus 34 G~~~A~imiVGeAPG~~e-d~~G~PFvg~sG~lL~~~LGl~r~~------------------------------------ 76 (198)
T 3ikb_A 34 APKTARINIVGQAPGIKA-QESRLYWNDKSGDRLREWMGVDYDT------------------------------------ 76 (198)
T ss_dssp CCTTCCEEEECSCCCHHH-HHHCCSSCSHHHHHHHHHHTCCHHH------------------------------------
T ss_pred cCCCCCEEEEeCCCCccc-cccCCCCCChHHHHHHHHhCccHHH------------------------------------
Confidence 566899999999999997 99999999998 999999877533
Q ss_pred CchhhhhhhchhhccccccccccCCCCCCCCCCCChhhHHHHHHHHH-HHHHHHHhhcCc-eEEEEechHHHHHHHHH--
Q psy9259 189 GKAADFFKHAYVHNYFPLAFVSKTATNITPAELKNKTTIEKLNSICD-KSLSDIVKHLGI-ETVIAIGKFAETRAEKA-- 264 (489)
Q Consensus 189 g~~~~F~~~~fv~n~cPL~f~~~~g~n~tp~~l~~~~~~~~l~~~c~-~~L~~~i~~l~~-~~vv~vG~~a~~~~~~~-- 264 (489)
||...-|+ ++|++||.|. +| ...|.|+. ..|. .+|.++|++++| ++||+||+||.+.+...
T Consensus 77 -----~y~~~~v~-I~~~~~C~Pp-~~-k~g~~pp~-------~~c~~~~l~~~i~l~~p~~liv~lG~~A~~~~L~~~~ 141 (198)
T 3ikb_A 77 -----FYHSGYFA-VIPMDFYYPG-KG-KSGDLPPR-------KGFAQKWHQPILDLLPDIQLTILIGNYAQKYYLHQKS 141 (198)
T ss_dssp -----HHHSSCEE-ECCSCSSCCC-BC-SSSBCCCC-------TTHHHHHHHHHHTTCTTCCEEEEESHHHHHHHTTCCT
T ss_pred -----hcccCCeE-EEeeeeecCC-CC-CCCCCCch-------HHHHHHHHHHHHHhCCCCeEEEEeCHHHHHHHcCCCc
Confidence 55544342 7899999987 44 23566665 4565 689999999987 99999999999887632
Q ss_pred -------HHhcccccceEeeecCCCCCCCCCCchhhHHHHHHHHhcCccccccccccccc
Q psy9259 265 -------LKSNRIFTVKVTSISHPSPRNPASNKNWVENTTKKLKDLGVLHYFTSESQNIP 317 (489)
Q Consensus 265 -------~~~~~~~~v~V~~L~HPSprnp~anr~W~E~a~~aLeEAgvL~~L~~ea~evP 317 (489)
...|..+...+++++|||++ |+.|..+ ..++|..+++.|+....++.
T Consensus 142 ~~~it~~rg~w~~~~~~~~p~~HPS~r----n~~w~kk--npwfe~e~~p~l~~~v~~~l 195 (198)
T 3ikb_A 142 SVKLTDTVAHYKKYLPDYFPLVHPSPR----NQIWMSR--HPWFEAQVVPDLKKIIQQII 195 (198)
T ss_dssp TSCHHHHHHTGGGGTTTEEEECCCCGG----GHHHHHH--CTHHHHTHHHHHHHHHHHHH
T ss_pred cCCHHHHhhhhHhhCCCEEEEeCCccc----chHHHHh--CchHHHHhHHHHHHHHHHHH
Confidence 22332223489999999999 6789988 99999999999888765543
No 20
>2d3y_A Uracil-DNA glycosylase; base excision repair, iron/sulfer CL thermophIle, structural genomics, NPPSFA; HET: DU; 1.55A {Thermus thermophilus} PDB: 2ddg_A* 2dem_A* 2dp6_A*
Probab=99.61 E-value=3.9e-16 Score=150.72 Aligned_cols=139 Identities=19% Similarity=0.215 Sum_probs=97.3
Q ss_pred HHhcCCCcEEEEeecCCCccccccCcccCChhhhhhhhcccCCCCCCcccCCCCCcCCCCCCccccchhHHHHHHHHhhC
Q psy9259 109 KYCNSKKKILFLGMNPGPWGMVQCGIPFGEVKAVKGFLNIEGKVNQPEKFHKDRPIKGLDCPRSEISGKRLWELASQLSD 188 (489)
Q Consensus 109 ky~~~~~rvl~lGmnPGp~Gm~qTGvPFgd~~~vr~wlgi~~~v~~p~~ehp~rpv~g~~c~~~evSg~r~w~~~~~~~~ 188 (489)
-+++..++|||||++||.+|..+||+||+++ .||.+||.++.+.-
T Consensus 45 g~G~~~a~lmivGeaPG~~g~~~~G~pF~Gd----------------------------------~sG~~L~~~L~~~G- 89 (219)
T 2d3y_A 45 GFGDPEARILLFGLAPGAHGSNRTGRPFTGD----------------------------------ASGAFLYPLLHEAG- 89 (219)
T ss_dssp CEECTTCSEEEEESCCCTTTHHHHSSTTTTS----------------------------------HHHHHHHHHHHHTT-
T ss_pred CCCCCCCCEEEEecCCCCcchhhcCCCCCCC----------------------------------cHHHHHHHHHHHcC-
Confidence 4577799999999999999989999999971 23444444443321
Q ss_pred Cchhhhh--------hhchhhccccccccccCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHhhcCc-eEEEEechHHHH
Q psy9259 189 GKAADFF--------KHAYVHNYFPLAFVSKTATNITPAELKNKTTIEKLNSICDKSLSDIVKHLGI-ETVIAIGKFAET 259 (489)
Q Consensus 189 g~~~~F~--------~~~fv~n~cPL~f~~~~g~n~tp~~l~~~~~~~~l~~~c~~~L~~~i~~l~~-~~vv~vG~~a~~ 259 (489)
-+.+.|| .++||.|.++ |.+.| | ++. .+++. .|.++|.++|++++| ++||++|++|.+
T Consensus 90 l~~~~~~~~~d~l~~~~vyItn~vk---c~P~~-n------~P~--~~Ei~-~C~~~L~~ei~~~~p~~vIv~lG~~A~~ 156 (219)
T 2d3y_A 90 LSSKPESLPGDDLRLYGVYLTAAVR---CAPPK-N------KPT--PEELR-ACARWTEVELGLLPEVRVYVALGRIALE 156 (219)
T ss_dssp CBSCSCCCTTSCCCBSSEEEEESCC---SCCGG-G------CCC--HHHHH-HHHHHHHHHHHTCTTCCEEEEESHHHHH
T ss_pred CCcccccccccccccCCEEEEeccc---ccCCC-C------CcC--HHHHH-HHHHHHHHHHHhCCCccEEEEeCHHHHH
Confidence 3334455 4678876654 55542 2 333 55554 688999999999999 999999999999
Q ss_pred HHHHHHH-------h-cc----c-ccceEeeecCCCCCCCCCCch-hhHH
Q psy9259 260 RAEKALK-------S-NR----I-FTVKVTSISHPSPRNPASNKN-WVEN 295 (489)
Q Consensus 260 ~~~~~~~-------~-~~----~-~~v~V~~L~HPSprnp~anr~-W~E~ 295 (489)
.+..... . .+ . .++++++++|||++|+...+. |+.+
T Consensus 157 ~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~HPS~rn~~~k~~~~~dl 206 (219)
T 2d3y_A 157 ALLAHFGLRKSAHPFRHGAHYPLPGGRHLLASYHVSRQNTQTGRLTREMF 206 (219)
T ss_dssp HHHHHHTCCTTTSCCCTTCEEEETTTEEEEEECCCSHHHHHHTSSCHHHH
T ss_pred HHhcccccccccceeeCCcEEEcCCCCEEEEeeCCCCCCcccchHHHHHH
Confidence 8876521 0 01 1 247899999999998765444 6654
No 21
>1ui0_A Uracil-DNA glycosylase; base excision repair, iron/sulfer cluster, thermophIle, riken structural genomics/proteomics initiative, RSGI; 1.50A {Thermus thermophilus} SCOP: c.18.1.2 PDB: 1ui1_A
Probab=99.50 E-value=1.8e-14 Score=137.98 Aligned_cols=130 Identities=21% Similarity=0.297 Sum_probs=93.9
Q ss_pred HHHHHhcCCCcEEEEeecCCCccccccCcccCChhhhhhhhcccCCCCCCcccCCCCCcCCCCCCccccchhHHHHHHHH
Q psy9259 106 YVYKYCNSKKKILFLGMNPGPWGMVQCGIPFGEVKAVKGFLNIEGKVNQPEKFHKDRPIKGLDCPRSEISGKRLWELASQ 185 (489)
Q Consensus 106 y~~ky~~~~~rvl~lGmnPGp~Gm~qTGvPFgd~~~vr~wlgi~~~v~~p~~ehp~rpv~g~~c~~~evSg~r~w~~~~~ 185 (489)
.+--+++..+||||||++||.++ .+||+||++. ||.+||.++.+
T Consensus 25 ~V~g~G~~~a~ll~VGeaPG~~e-~~~G~pF~g~-----------------------------------sG~~L~~~L~~ 68 (205)
T 1ui0_A 25 VVFGEGNPDAKLMIVGEGPGEEE-DKTGRPFVGK-----------------------------------AGQLLNRILEA 68 (205)
T ss_dssp CCCCEECTTCSEEEEESCCCHHH-HHHSCSSCSH-----------------------------------HHHHHHHHHHH
T ss_pred cccCCCCCCCCEEEEECCCChhh-hhcCCCCcCc-----------------------------------HHHHHHHHHHH
Confidence 34456788999999999999999 9999999974 45566655544
Q ss_pred hhCCchhhhhhhchhhccccccccccCCCCCCCCCCCChhhHHHHHHHHHH-HHHHHHhhcCceEEEEechHHHHHHHH-
Q psy9259 186 LSDGKAADFFKHAYVHNYFPLAFVSKTATNITPAELKNKTTIEKLNSICDK-SLSDIVKHLGIETVIAIGKFAETRAEK- 263 (489)
Q Consensus 186 ~~~g~~~~F~~~~fv~n~cPL~f~~~~g~n~tp~~l~~~~~~~~l~~~c~~-~L~~~i~~l~~~~vv~vG~~a~~~~~~- 263 (489)
.- -+.+ ++|+.|.++ |.+.| |. ++. .+++. .|.. +|.++|++++|++||++|++|.+.+..
T Consensus 69 ~G-l~r~----~~yitn~vk---c~P~~-nr-----~P~--~~Ei~-~C~~~~L~~ei~~l~P~vIv~lG~~A~~~ll~~ 131 (205)
T 1ui0_A 69 AG-IPRE----EVYITNIVK---CRPPQ-NR-----APL--PDEAK-ICTDKWLLKQIELIAPQIIVPLGAVAAEFFLGE 131 (205)
T ss_dssp HT-CCGG----GSEEEESCS---SCCGG-GC-----CCC--HHHHH-HHHHHTHHHHHHHHCCSEEEEBSHHHHHHHHTS
T ss_pred cC-CCcc----cceeeeeee---ccCCC-CC-----CcC--HHHHH-HhHHHHHHHHHHhCCccEEEeehHHHHHHHHcc
Confidence 32 3333 678888875 55542 32 233 44444 5778 999999999999999999999988864
Q ss_pred ---HHHhcc----cccceEeeecCCCC--CCCCC
Q psy9259 264 ---ALKSNR----IFTVKVTSISHPSP--RNPAS 288 (489)
Q Consensus 264 ---~~~~~~----~~~v~V~~L~HPSp--rnp~a 288 (489)
+.+..+ ..++.+++++|||+ +|+..
T Consensus 132 ~~~i~~~~g~~~~~~g~~v~~~~HPS~llrn~~~ 165 (205)
T 1ui0_A 132 KVSITKVRGKWYEWHGIKVFPMFHPAYLLRNPSR 165 (205)
T ss_dssp CCCHHHHTTCCEEETTEEECCBCCHHHHHHSCCC
T ss_pred CCcHhHHhCceEeeCCCEEEEecCCCHHHhCchh
Confidence 211122 12478999999999 87765
No 22
>1vk2_A Uracil-DNA glycosylase TM0511; structural genomics, JCSG, P protein structure initiative, joint center for structural G hydrolase; 1.90A {Thermotoga maritima} SCOP: c.18.1.2 PDB: 1l9g_A
Probab=99.47 E-value=2.3e-14 Score=137.14 Aligned_cols=128 Identities=24% Similarity=0.298 Sum_probs=91.2
Q ss_pred HHHHhcCCCcEEEEeecCCCccccccCcccCChhhhhhhhcccCCCCCCcccCCCCCcCCCCCCccccchhHHHHHHHHh
Q psy9259 107 VYKYCNSKKKILFLGMNPGPWGMVQCGIPFGEVKAVKGFLNIEGKVNQPEKFHKDRPIKGLDCPRSEISGKRLWELASQL 186 (489)
Q Consensus 107 ~~ky~~~~~rvl~lGmnPGp~Gm~qTGvPFgd~~~vr~wlgi~~~v~~p~~ehp~rpv~g~~c~~~evSg~r~w~~~~~~ 186 (489)
|--+++..+||||||++||.++ .+||+||++. ||.+||.++.+.
T Consensus 43 V~g~G~~~a~lm~VGeaPG~~e-~~~G~pF~g~-----------------------------------sG~~L~~~L~~~ 86 (204)
T 1vk2_A 43 VVGEGNLDTRIVFVGEGPGEEE-DKTGRPFVGR-----------------------------------AGMLLTELLRES 86 (204)
T ss_dssp CCCEECTTCSEEEEESCCCHHH-HHHTCSSCSH-----------------------------------HHHHHHHHHHHT
T ss_pred ccCCCCCCCCEEEEECCCCcch-hhcCCCCcCh-----------------------------------HHHHHHHHHHHc
Confidence 4456778999999999999998 9999999985 455555555433
Q ss_pred hCCchhhhhhhchhhccccccccccCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHhhcCceEEEEechHHHHHHHHH--
Q psy9259 187 SDGKAADFFKHAYVHNYFPLAFVSKTATNITPAELKNKTTIEKLNSICDKSLSDIVKHLGIETVIAIGKFAETRAEKA-- 264 (489)
Q Consensus 187 ~~g~~~~F~~~~fv~n~cPL~f~~~~g~n~tp~~l~~~~~~~~l~~~c~~~L~~~i~~l~~~~vv~vG~~a~~~~~~~-- 264 (489)
= =+. +++||.|.++ |.+.| |. ++. .+++ ..|.++|.++|++++|++||++|++|.+.+...
T Consensus 87 G-l~r----~~~yitn~vk---c~P~~-nr-----~P~--~~Ei-~~C~~~L~~ei~~~~P~vIv~lG~~A~~~ll~~~~ 149 (204)
T 1vk2_A 87 G-IRR----EDVYICNVVK---CRPPN-NR-----TPT--PEEQ-AACGHFLLAQIEIINPDVIVALGATALSFFVDGKK 149 (204)
T ss_dssp T-CCG----GGSEEEESCS---SCCGG-GC-----CCC--HHHH-HHHHHHHHHHHHHHCCSEEEEESHHHHHHTTTTCC
T ss_pred C-CCc----CcEEEecccC---CcCCC-Cc-----CCC--HHHH-HHHHHHHHHHHHhCCccEEEeecHHHHHHHhccCc
Confidence 1 222 2688998885 55542 33 233 4555 458899999999999999999999999887532
Q ss_pred --H-Hhcc----ccc-ceEeeecCCCC--CCCC
Q psy9259 265 --L-KSNR----IFT-VKVTSISHPSP--RNPA 287 (489)
Q Consensus 265 --~-~~~~----~~~-v~V~~L~HPSp--rnp~ 287 (489)
+ +..+ ..+ +++++++|||+ +|+.
T Consensus 150 ~~i~~~rg~~~~~~~~~~v~~~~HPS~llrn~~ 182 (204)
T 1vk2_A 150 VSITKVRGNPIDWLGGKKVIPTFHPSYLLRNRS 182 (204)
T ss_dssp CCHHHHTTCCEECGGGCEEEEECCHHHHHHCCC
T ss_pred CchhhhcCcEEEeCCCeEEEEecCCcHHHhCcC
Confidence 1 1111 123 68999999999 6543
No 23
>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A* 1ux1_A*
Probab=98.99 E-value=1.6e-09 Score=97.40 Aligned_cols=67 Identities=25% Similarity=0.358 Sum_probs=57.9
Q ss_pred CeEEEEE---CCcEEEEeeCCCCCCCCCchHHHHHHHHHHHHHCCCcccccccceeeeeccchhhhhhhhhhhcccCcEE
Q psy9259 325 RTLGFTV---DERSKTRGMNEVNATKNATRHAEMVCIDHIVRQYPSTYRRVFESITVIVNVEPCIMCMAALLRVFESITV 401 (489)
Q Consensus 325 ~~VGaVi---dG~IIa~G~N~~~~~~dpt~HAE~~AI~~a~~~l~~~~r~~~~s~~l~~~~ep~~l~~~~~~~~l~g~tL 401 (489)
.+|||++ ||+|+ +|+|..+...+++.|||..||.+|... +. + .++.++|
T Consensus 24 ~~VGAal~~~dG~i~-~G~Nvena~~~~t~cAE~~Ai~~A~~~-G~-~-------------------------~~~~~~l 75 (136)
T 1uwz_A 24 FQVGAALLTKDGKVY-RGCNIENAAYSMCNCAEATALFKAVSE-GD-T-------------------------EFQMLAV 75 (136)
T ss_dssp CCEEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHH-TC-C-------------------------CEEEEEE
T ss_pred CCEEEEEEeCCCeEE-EEeCcccCCCCCccCHHHHHHHHHHHC-CC-C-------------------------CeEEEEE
Confidence 4789864 89999 799999988999999999999999987 42 2 2678899
Q ss_pred EEe----cCCChhhHHHHHHcC
Q psy9259 402 IVN----VEPCIMCMAALLSLN 419 (489)
Q Consensus 402 YvT----lEPC~MCa~AIi~sg 419 (489)
|++ ++||.||..+|.+.+
T Consensus 76 ~~~~~~~~~PCg~Crq~l~e~~ 97 (136)
T 1uwz_A 76 AADTPGPVSPCGACRQVISELC 97 (136)
T ss_dssp EESCSSSCCCCHHHHHHHHHHS
T ss_pred EeCCCCccCHHHHHHHHHHHcC
Confidence 995 999999999999986
No 24
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=98.83 E-value=1.5e-08 Score=92.24 Aligned_cols=90 Identities=18% Similarity=0.210 Sum_probs=68.8
Q ss_pred chhhHHHHHHHHhcCccccccccccccccCCCCCCCeEEEEE---CCcEEEEeeCCCCCCCCCchHHHHHHHHHHHHHCC
Q psy9259 290 KNWVENTTKKLKDLGVLHYFTSESQNIPNHEHCNHRTLGFTV---DERSKTRGMNEVNATKNATRHAEMVCIDHIVRQYP 366 (489)
Q Consensus 290 r~W~E~a~~aLeEAgvL~~L~~ea~evP~~s~C~~~~VGaVi---dG~IIa~G~N~~~~~~dpt~HAE~~AI~~a~~~l~ 366 (489)
..|.+.+..+.+.+.. + -.|. ...+|||++ ||+|+ +|.|..+.+.+.+.|||..||.+|... +
T Consensus 13 ~~~~~L~~~A~~a~~~-------a-yapy----s~f~VGAal~~~dG~i~-~G~NvEnas~~~t~cAE~~Ai~~A~~~-G 78 (146)
T 2fr5_A 13 EHVQRLLLSSREAKKS-------A-YCPY----SRFPVGAALLTGDGRIF-SGCNIENACYPLGVCAERTAIQKAISE-G 78 (146)
T ss_dssp HHHHHHHHHHHHHHTT-------C-BCTT----TCCCEEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHT-T
T ss_pred HHHHHHHHHHHHHHHh-------c-CCCc----CCCCEEEEEEeCCCcEE-EEEeccccCCCCCcCHHHHHHHHHHhC-C
Confidence 4577776666555432 1 1232 125899864 89999 699998888889999999999999976 4
Q ss_pred CcccccccceeeeeccchhhhhhhhhhhcccCcEEEEe-----cCCChhhHHHHHHcC
Q psy9259 367 STYRRVFESITVIVNVEPCIMCMAALLRVFESITVIVN-----VEPCIMCMAALLSLN 419 (489)
Q Consensus 367 ~~~r~~~~s~~l~~~~ep~~l~~~~~~~~l~g~tLYvT-----lEPC~MCa~AIi~sg 419 (489)
. . .++.+.+|++ ++||.||..+|.+.+
T Consensus 79 ~-~-------------------------~l~~i~v~~~~~~~~~~PCG~Crq~l~E~~ 110 (146)
T 2fr5_A 79 Y-K-------------------------DFRAIAISSDLQEEFISPCGACRQVMREFG 110 (146)
T ss_dssp C-C-------------------------CEEEEEEEESCSSSCCCCCHHHHHHHHHTC
T ss_pred C-C-------------------------ceEEEEEEeCCCCcccCCCHHHHHHHHHhC
Confidence 2 1 2677889988 999999999999997
No 25
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A*
Probab=98.54 E-value=3.8e-07 Score=81.32 Aligned_cols=67 Identities=22% Similarity=0.282 Sum_probs=54.1
Q ss_pred CeEEEEE---CCcEEEEeeCCCCCCCCCchHHHHHHHHHHHHHCCCcccccccceeeeeccchhhhhhhhhhhcccCcEE
Q psy9259 325 RTLGFTV---DERSKTRGMNEVNATKNATRHAEMVCIDHIVRQYPSTYRRVFESITVIVNVEPCIMCMAALLRVFESITV 401 (489)
Q Consensus 325 ~~VGaVi---dG~IIa~G~N~~~~~~dpt~HAE~~AI~~a~~~l~~~~r~~~~s~~l~~~~ep~~l~~~~~~~~l~g~tL 401 (489)
.+|||++ ||+|+ +|.|.. +.+++.|||..||.+|... +.. .++.+++
T Consensus 27 f~VGAal~~~dG~i~-~G~NvE--~~~~t~cAE~~Ai~~A~~~-G~~--------------------------~~~~i~v 76 (130)
T 2z3g_A 27 YSVASAALSSDGRIF-TGVNVY--HFTGGPCAELVVLGTAAAA-AAG--------------------------NLTCIVA 76 (130)
T ss_dssp SCEEEEEEETTSCEE-EEECCC--CTTTCCCHHHHHHHHHHHT-TCC--------------------------CEEEEEE
T ss_pred CCEEEEEEecCCeEE-EEeccc--cCCcccCHHHHHHHHHHHc-CCC--------------------------ceEEEEE
Confidence 5789864 89999 599976 5678999999999999875 321 2566778
Q ss_pred EE-----ecCCChhhHHHHHHcCCC
Q psy9259 402 IV-----NVEPCIMCMAALLSLNIR 421 (489)
Q Consensus 402 Yv-----TlEPC~MCa~AIi~sgIk 421 (489)
|+ +++||.||..+|.+.+-.
T Consensus 77 v~~~~~~~~~PCG~Crq~l~e~~~~ 101 (130)
T 2z3g_A 77 IGNENRGILSPCGRCRQVLLDLHPG 101 (130)
T ss_dssp EETTTTEEECCCHHHHHHHHHHCTT
T ss_pred EECCCCCccCcCHHHHHHHHHhCCC
Confidence 87 799999999999998744
No 26
>1wyw_A TDG, G/T mismatch-specific thymine DNA glycosylase; hydrolase; 2.10A {Homo sapiens} SCOP: c.18.1.2 PDB: 2d07_A 3uob_A* 2rba_A* 3ufj_A* 3uo7_A*
Probab=98.46 E-value=6.7e-07 Score=86.99 Aligned_cols=125 Identities=15% Similarity=0.151 Sum_probs=83.4
Q ss_pred HhcCCCcEEEEeecCCCccccccCcccCChhhhhhhhcccCCCCCCcccCCCCCcCCCCCCccccchhHHHHHHHHhhCC
Q psy9259 110 YCNSKKKILFLGMNPGPWGMVQCGIPFGEVKAVKGFLNIEGKVNQPEKFHKDRPIKGLDCPRSEISGKRLWELASQLSDG 189 (489)
Q Consensus 110 y~~~~~rvl~lGmnPGp~Gm~qTGvPFgd~~~vr~wlgi~~~v~~p~~ehp~rpv~g~~c~~~evSg~r~w~~~~~~~~g 189 (489)
+++...||||||.|||.++ ..||.+|+.+.- +||..+- ++ |
T Consensus 18 ~~~~~arvLilG~~Pg~~s-~~~g~~Ya~p~N------------------------------------~FW~iL~-~~-G 58 (230)
T 1wyw_A 18 ILTFNLDIVIIGINPGLMA-AYKGHHYPGPGN------------------------------------HFWKCLF-MS-G 58 (230)
T ss_dssp BCCSSCSEEEEESSCCHHH-HHHTSSSCSSSB------------------------------------CHHHHHH-HT-T
T ss_pred CCCCCCCEEEEecCCCcch-hccCCCCCCCcc------------------------------------HHHHHHH-Hh-C
Confidence 3667899999999999999 689999998841 3444333 33 1
Q ss_pred ch-h--------hhh--hhchhhccccccccccCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHhhcCceEEEEechHHH
Q psy9259 190 KA-A--------DFF--KHAYVHNYFPLAFVSKTATNITPAELKNKTTIEKLNSICDKSLSDIVKHLGIETVIAIGKFAE 258 (489)
Q Consensus 190 ~~-~--------~F~--~~~fv~n~cPL~f~~~~g~n~tp~~l~~~~~~~~l~~~c~~~L~~~i~~l~~~~vv~vG~~a~ 258 (489)
=. . .|= ..+.++|.+ .-|++..+.+. .+++. .|+..|.+.|....|++|+.+|+.|.
T Consensus 59 ~~~~~~~~~~~~~ll~~~gIgitdvV---------~rc~~~s~d~s--~~e~~-~~~~~L~~~i~~~~Pr~I~~~G~~A~ 126 (230)
T 1wyw_A 59 LSEVQLNHMDDHTLPGKYGIGFTNMV---------ERTTPGSKDLS--SKEFR-EGGRILVQKLQKYQPRIAVFNGKCIY 126 (230)
T ss_dssp SSSSCCCGGGGGGHHHHHSEEEEESC---------CSCCSCGGGCC--HHHHH-HHHHHHHHHHHHHCCSEEEEESHHHH
T ss_pred CCCCCCCHHHHHHHHHhCCEEeeehh---------cccCCCCCCCc--hHHHh-cccHHHHHHHHhcCCCEEEEcCHHHH
Confidence 11 0 011 112233321 24567666666 55654 68899999999888899999999998
Q ss_pred HHHHH-HHH----h--cc-----c--ccceEeeecCCCCCC
Q psy9259 259 TRAEK-ALK----S--NR-----I--FTVKVTSISHPSPRN 285 (489)
Q Consensus 259 ~~~~~-~~~----~--~~-----~--~~v~V~~L~HPSprn 285 (489)
+.+.+ ++. . ++ . ...++.++|+|||++
T Consensus 127 ~~~~~~~~g~~~~~~~~G~q~~~~~~~~~~~~vLPStSpan 167 (230)
T 1wyw_A 127 EIFSKEVFGVKVKNLEFGLQPHKIPDTETLCYVMPSSSARC 167 (230)
T ss_dssp HHHHHHHTCCCCSSCCSEECSCCSTTSCCEEEEECCCBTTC
T ss_pred HHHHHHhhccccccccccccccccCCCCeeEEEecCCCHHH
Confidence 77665 321 0 01 0 126789999999986
No 27
>3b8f_A Putative blasticidin S deaminase; cytidine deaminase, structural genomics, MCSG, protein structure initiative; 1.90A {Bacillus anthracis}
Probab=98.01 E-value=1.1e-05 Score=72.89 Aligned_cols=73 Identities=14% Similarity=0.084 Sum_probs=55.5
Q ss_pred eEEEEE---CCcEEEEeeCCCCCCCCCchHHHHHHHHHHHHHCCCcccccccceeeeeccchhhhhhhhhhhcccCcEEE
Q psy9259 326 TLGFTV---DERSKTRGMNEVNATKNATRHAEMVCIDHIVRQYPSTYRRVFESITVIVNVEPCIMCMAALLRVFESITVI 402 (489)
Q Consensus 326 ~VGaVi---dG~IIa~G~N~~~~~~dpt~HAE~~AI~~a~~~l~~~~r~~~~s~~l~~~~ep~~l~~~~~~~~l~g~tLY 402 (489)
+|||++ ||+|+ +|.|-.+...+++.|||..||.++... +. + ..+.+.++
T Consensus 24 ~VGAAl~~~dG~i~-~G~NvEnas~~~~lcAEr~Ai~~a~~~-G~--~------------------------~~~~~~v~ 75 (142)
T 3b8f_A 24 GGAAAIRVEDGTIY-TSVAPDVINASTELCMETGAILEAHKF-QK--K------------------------VTHSICLA 75 (142)
T ss_dssp EEEEEEEETTSCEE-EECCCCCSSGGGCCCTTHHHHHHHHHH-TC--C------------------------EEEEEEEE
T ss_pred CEEEEEEeCCCcEE-EEECcccccCCcccCHHHHHHHHHHHC-CC--C------------------------cEEEEEEE
Confidence 789854 89998 799999888889999999999999876 32 1 13344555
Q ss_pred E--------ecCCChhhHHHHHHcCCCEEEEE
Q psy9259 403 V--------NVEPCIMCMAALLSLNIRTIVFA 426 (489)
Q Consensus 403 v--------TlEPC~MCa~AIi~sgIkrVVyg 426 (489)
. ++-||.||...|.+.+-.-.|+-
T Consensus 76 ~~~~~~~~~~~sPCG~CRq~l~e~~~~~~v~~ 107 (142)
T 3b8f_A 76 RENEHSELKVLSPCGVCQERLFYWGPEVQCAI 107 (142)
T ss_dssp ESSTTSCCEECCCCHHHHHHHGGGCTTCEEEC
T ss_pred ecCCCCCCCCCCcHHHHHHHHHHhCCCCEEEE
Confidence 4 45599999999999975444443
No 28
>3r2n_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.30A {Mycobacterium leprae} SCOP: c.97.1.0
Probab=97.86 E-value=5.9e-05 Score=67.96 Aligned_cols=72 Identities=22% Similarity=0.212 Sum_probs=54.1
Q ss_pred CeEEEEE---CCcEEEEeeCCCCCCCCCchHHHHHHHHHHHHHCCCcccccccceeeeeccchhhhhhhhhhhcccCcEE
Q psy9259 325 RTLGFTV---DERSKTRGMNEVNATKNATRHAEMVCIDHIVRQYPSTYRRVFESITVIVNVEPCIMCMAALLRVFESITV 401 (489)
Q Consensus 325 ~~VGaVi---dG~IIa~G~N~~~~~~dpt~HAE~~AI~~a~~~l~~~~r~~~~s~~l~~~~ep~~l~~~~~~~~l~g~tL 401 (489)
.+|||++ ||+|+ +|.|-.+.+...+.|||..||.+|...... + ++ .|
T Consensus 31 f~VGAAll~~dG~i~-~G~NvEnasy~~t~CAEr~Ai~~Av~~G~~--~-------------------------i~--ai 80 (138)
T 3r2n_A 31 FPVGVAGFVNDGRLI-TGVNVENASYGLALCAECSMISALYATGGG--R-------------------------LV--AV 80 (138)
T ss_dssp CCCEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHTTCC--C-------------------------EE--EE
T ss_pred CcEEEEEEeCCCcEE-EEEcccccCCCCCcCHHHHHHHHHHHcCCC--c-------------------------eE--EE
Confidence 5789865 89988 999988877788999999999999875221 1 22 24
Q ss_pred EEe------cCCChhhHHHHHHcCCCEEEEE
Q psy9259 402 IVN------VEPCIMCMAALLSLNIRTIVFA 426 (489)
Q Consensus 402 YvT------lEPC~MCa~AIi~sgIkrVVyg 426 (489)
+|+ +.||.+|-..|.+.+-..|+..
T Consensus 81 av~~~~~~~~~PCG~CRQ~l~E~~~~~i~v~ 111 (138)
T 3r2n_A 81 YCVDGNGDSLMPCGRCRQLLYEHGGPELKIM 111 (138)
T ss_dssp EEECTTSCBCCCCHHHHHHHHHHHCTTCEEE
T ss_pred EEEcCCCCcCCCCHHHHHHHHHhCCCCEEEE
Confidence 444 7999999999999863334443
No 29
>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1
Probab=97.85 E-value=7.9e-05 Score=67.32 Aligned_cols=91 Identities=21% Similarity=0.323 Sum_probs=63.4
Q ss_pred CchhhHHHHHHHHhcCccccccccccccccCCCCCCCeEEEEE---CCcEEEEeeCCCCCCCCCchHHHHHHHHHHHHHC
Q psy9259 289 NKNWVENTTKKLKDLGVLHYFTSESQNIPNHEHCNHRTLGFTV---DERSKTRGMNEVNATKNATRHAEMVCIDHIVRQY 365 (489)
Q Consensus 289 nr~W~E~a~~aLeEAgvL~~L~~ea~evP~~s~C~~~~VGaVi---dG~IIa~G~N~~~~~~dpt~HAE~~AI~~a~~~l 365 (489)
..+|.+.+..+.+.+.. .-.|. | .-+|||++ ||+|+ +|.|-.+.+-..+.|||..||-+|...
T Consensus 9 ~~~~~~L~~~A~~a~~~--------AyaPY-S---~f~VGAAll~~dG~i~-~G~NvEnasy~~t~CAEr~Ai~~Avs~- 74 (141)
T 2d30_A 9 HMNSKQLIQEAIEARKQ--------AYVPY-S---KFQVGAALLTQDGKVY-RGCNVENASYGLCNCAERTALFKAVSE- 74 (141)
T ss_dssp -CCHHHHHHHHHHHHTT--------CBCTT-T---CCCEEEEEEETTCCEE-EEECBCCSSGGGCBCHHHHHHHHHHHT-
T ss_pred ccCHHHHHHHHHHHHHh--------cCCCc-C---CCcEEEEEEeCCCCEE-EeeccccCCCCcccCHHHHHHHHHHHC-
Confidence 45799887766555431 12243 1 24789864 89887 899988777788999999999999875
Q ss_pred CCcccccccceeeeeccchhhhhhhhhhhcccCcEEEEe----cCCChhhHHHHHHcC
Q psy9259 366 PSTYRRVFESITVIVNVEPCIMCMAALLRVFESITVIVN----VEPCIMCMAALLSLN 419 (489)
Q Consensus 366 ~~~~r~~~~s~~l~~~~ep~~l~~~~~~~~l~g~tLYvT----lEPC~MCa~AIi~sg 419 (489)
+. + .++...++.. ..||.||-..|.+.+
T Consensus 75 G~--~------------------------~~~aiav~~~~~~~~~PCG~CRQ~l~E~~ 106 (141)
T 2d30_A 75 GD--K------------------------EFVAIAIVADTKRPVPPCGACRQVMVELC 106 (141)
T ss_dssp TC--C------------------------CEEEEEEEESCSSCCCCCHHHHHHHHHHS
T ss_pred CC--C------------------------ceEEEEEEeCCCCccCcCHHHHHHHHHhc
Confidence 32 1 1333344433 679999999999985
No 30
>1r5t_A Cytidine deaminase; zinc dependent deaminase, RNA editing, apobec-1 related protein, hydrolase; 2.00A {Saccharomyces cerevisiae} SCOP: c.97.1.1
Probab=97.82 E-value=0.0001 Score=66.49 Aligned_cols=68 Identities=15% Similarity=0.234 Sum_probs=53.6
Q ss_pred CeEEEEE---CCcEEEEeeCCCCCCCCCchHHHHHHHHHHHHHCCCcccccccceeeeeccchhhhhhhhhhhcccCcEE
Q psy9259 325 RTLGFTV---DERSKTRGMNEVNATKNATRHAEMVCIDHIVRQYPSTYRRVFESITVIVNVEPCIMCMAALLRVFESITV 401 (489)
Q Consensus 325 ~~VGaVi---dG~IIa~G~N~~~~~~dpt~HAE~~AI~~a~~~l~~~~r~~~~s~~l~~~~ep~~l~~~~~~~~l~g~tL 401 (489)
.+|||++ ||+|+ +|.|-.+...+++.|||..||.++... +.. + .++...+
T Consensus 32 f~VGAAl~~~dG~i~-~G~NvEnasy~~t~cAEr~Ai~~a~~~-G~~-~------------------------~i~~i~v 84 (142)
T 1r5t_A 32 FRVGCSILTNNDVIF-TGANVENASYSNCICAERSAMIQVLMA-GHR-S------------------------GWKCMVI 84 (142)
T ss_dssp CCEEEEEECTTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHT-TCC-S------------------------CCCEEEE
T ss_pred CCEEEEEEeCCCCEE-EEEeecccCCCCCcCHHHHHHHHHHHc-CCC-C------------------------ceEEEEE
Confidence 5789864 89988 599988888889999999999999875 321 0 1455667
Q ss_pred EEe----c-CCChhhHHHHHHcC
Q psy9259 402 IVN----V-EPCIMCMAALLSLN 419 (489)
Q Consensus 402 YvT----l-EPC~MCa~AIi~sg 419 (489)
|.. . .||.||...|.+.+
T Consensus 85 v~~~~~~~~~PCG~CRq~l~e~~ 107 (142)
T 1r5t_A 85 CGDSEDQCVSPCGVCRQFINEFV 107 (142)
T ss_dssp EESCSSSCCCCCHHHHHHHHTTS
T ss_pred EeCCCCcccCHHHHHHHHHHHhC
Confidence 763 5 89999999999986
No 31
>1mug_A Protein (G:T/U specific DNA glycosylase); hydrolase; 1.80A {Escherichia coli} SCOP: c.18.1.2 PDB: 1mtl_A 1mwi_A* 1mwj_A
Probab=97.57 E-value=0.00012 Score=67.64 Aligned_cols=124 Identities=16% Similarity=0.207 Sum_probs=73.1
Q ss_pred hcCCCcEEEEeecCCCccccccCcccCChhhhhhhhcccCCCCCCcccCCCCCcCCCCCCccccchhHHHHHHHHhhCCc
Q psy9259 111 CNSKKKILFLGMNPGPWGMVQCGIPFGEVKAVKGFLNIEGKVNQPEKFHKDRPIKGLDCPRSEISGKRLWELASQLSDGK 190 (489)
Q Consensus 111 ~~~~~rvl~lGmnPGp~Gm~qTGvPFgd~~~vr~wlgi~~~v~~p~~ehp~rpv~g~~c~~~evSg~r~w~~~~~~~~g~ 190 (489)
++...||||||.|||.. ..++|-+|+...- |||..+-. ++=+
T Consensus 6 ~~~~~~vLilGs~Pg~~-S~~~g~yYa~p~N------------------------------------~FW~il~~-~g~~ 47 (168)
T 1mug_A 6 LAPGLRVVFCGINPGLS-SAGTGFPFAHPAN------------------------------------RFWKVIYQ-AGFT 47 (168)
T ss_dssp CCTTCSEEEEESSCCHH-HHHHSSTTCSTTC------------------------------------CHHHHHHH-TTSS
T ss_pred cCCCCcEEEEecCCCcc-hhccCCcCCCCcc------------------------------------hHHHHHHH-cCCC
Confidence 45688999999999999 5999999998651 33332222 2111
Q ss_pred hhhhh---------hhchhhccccccccccCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHhhcCceEEEEechHHHHHH
Q psy9259 191 AADFF---------KHAYVHNYFPLAFVSKTATNITPAELKNKTTIEKLNSICDKSLSDIVKHLGIETVIAIGKFAETRA 261 (489)
Q Consensus 191 ~~~F~---------~~~fv~n~cPL~f~~~~g~n~tp~~l~~~~~~~~l~~~c~~~L~~~i~~l~~~~vv~vG~~a~~~~ 261 (489)
++.++ ....++|++- + .+..|-.-. .+++. -|...|.+.|+..+|++|+.+|+.|.+.+
T Consensus 48 ~~~~~~~~~~~L~~~gIgl~dvv~----R-----~~~~ds~l~--~~e~~-~~~~~L~~~i~~~~p~~I~~~G~~a~~~~ 115 (168)
T 1mug_A 48 DRQLKPQEAQHLLDYRCGVTKLVD----R-----PTVQANEVS--KQELH-AGGRKLIEKIEDYQPQALAILGKQAYEQG 115 (168)
T ss_dssp SSCCCGGGGGGGGGGTEEEEESCC----C-----CCSSGGGSC--HHHHH-HHHHHHHHHHHHHCCSEEEEECHHHHHHH
T ss_pred cccCCHHHHhhHHHCCEEEEEEee----c-----CCCCccccc--HHHHh-hhHHHHHHHHHhCCCcEEEECCHHHHHHH
Confidence 11111 2334444441 1 223222111 33333 35678999998778999999999886543
Q ss_pred HHHH-Hhccc-----ccceEeeecCCCCC
Q psy9259 262 EKAL-KSNRI-----FTVKVTSISHPSPR 284 (489)
Q Consensus 262 ~~~~-~~~~~-----~~v~V~~L~HPSpr 284 (489)
..-. ..++. ...++..+|-+||+
T Consensus 116 ~~~~~~~~g~q~~~~~~~~~~~lPStSpa 144 (168)
T 1mug_A 116 FSQRGAQWGKQTLTIGSTQIWVLPNPSGL 144 (168)
T ss_dssp HTCCSCCSEEEEEEETTEEEEEECCCSTT
T ss_pred HhcccccccccccccCCccEEEEeCCChh
Confidence 2100 01211 13578889988888
No 32
>3mpz_A Cytidine deaminase; ssgcid, structu genomics, seattle structural genomics center for infectious hydrolase; 1.70A {Mycobacterium smegmatis} PDB: 3ijf_X 4f3w_A
Probab=97.33 E-value=0.00061 Score=62.16 Aligned_cols=94 Identities=21% Similarity=0.261 Sum_probs=63.3
Q ss_pred CCCCchhhHHHHHHHHhcCccccccccccccccCCCCCCCeEEEEE---CCcEEEEeeCCCCCCCCCchHHHHHHHHHHH
Q psy9259 286 PASNKNWVENTTKKLKDLGVLHYFTSESQNIPNHEHCNHRTLGFTV---DERSKTRGMNEVNATKNATRHAEMVCIDHIV 362 (489)
Q Consensus 286 p~anr~W~E~a~~aLeEAgvL~~L~~ea~evP~~s~C~~~~VGaVi---dG~IIa~G~N~~~~~~dpt~HAE~~AI~~a~ 362 (489)
|.....|.+.+.++.+.... .-.|. | .-+|||++ ||+|+ +|.|-.+.+...+.|||..||-+|.
T Consensus 19 ~~~~~~~~~L~~~A~~a~~~--------AYaPY-S---~F~VGAAll~~dG~i~-tG~NvEnasy~~t~CAEr~Ai~~Av 85 (150)
T 3mpz_A 19 PGSMVNWNALRSKAIEVSRH--------AYAPY-S---GFPVGAAALVDDGRTV-TGCNVENVSYGLGLCAECAVVCALH 85 (150)
T ss_dssp -CCSCCHHHHHHHHHHHHTT--------CBCTT-T---CCCCEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHh--------ccCCC-C---CCCEEEEEEeCCCCEE-EEEecccccCCccccHHHHHHHHHH
Confidence 44456798877666555431 11243 1 24789864 89998 9999888777789999999999998
Q ss_pred HHCCCcccccccceeeeeccchhhhhhhhhhhcccCcEEEE----ecCCChhhHHHHHHcC
Q psy9259 363 RQYPSTYRRVFESITVIVNVEPCIMCMAALLRVFESITVIV----NVEPCIMCMAALLSLN 419 (489)
Q Consensus 363 ~~l~~~~r~~~~s~~l~~~~ep~~l~~~~~~~~l~g~tLYv----TlEPC~MCa~AIi~sg 419 (489)
.. +. .+ ++...++. .+.||.+|-..|.+.+
T Consensus 86 s~-G~-~~-------------------------i~aiavv~~~~~~~~PCG~CRQ~L~Ef~ 119 (150)
T 3mpz_A 86 SG-GG-GR-------------------------LVALSCVGPDGGVLMPCGRCRQVLLEHG 119 (150)
T ss_dssp HT-TC-CC-------------------------EEEEEEECTTSCBCCCCHHHHHHHHHHH
T ss_pred Hc-CC-Cc-------------------------eEEEEEEcCCCCccCCCHHHHHHHHHhC
Confidence 75 32 11 22222221 3689999999999975
No 33
>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A*
Probab=97.26 E-value=0.00067 Score=68.17 Aligned_cols=88 Identities=20% Similarity=0.164 Sum_probs=62.1
Q ss_pred hhhHHHHHHHHhcCccccccccccccccCCCCCCCeEEEEE---CCcEEEEeeCCCCCC--CCCchHHHHHHHHHHHHHC
Q psy9259 291 NWVENTTKKLKDLGVLHYFTSESQNIPNHEHCNHRTLGFTV---DERSKTRGMNEVNAT--KNATRHAEMVCIDHIVRQY 365 (489)
Q Consensus 291 ~W~E~a~~aLeEAgvL~~L~~ea~evP~~s~C~~~~VGaVi---dG~IIa~G~N~~~~~--~dpt~HAE~~AI~~a~~~l 365 (489)
.|++++..++.++.- ..-.|. +..+|||++ ||+|+ +|.|-.+.+ ...+.|||..||-++...
T Consensus 48 ~~~~ll~~~a~~a~~-------~AyaPy----S~f~VGAall~~dG~i~-~G~NvEnas~~~~~t~CAEr~Ai~~A~~~- 114 (294)
T 1ctt_A 48 DEDALAFALLPLAAA-------CARTPL----SNFNVGAIARGVSGTWY-FGANMEFIGATMQQTVHAEQSAISHAWLS- 114 (294)
T ss_dssp CHHHHHHHHHHHHHH-------TCBCTT----TCCCCEEEEEETTSCEE-EEECBCCTTSCGGGCBCHHHHHHHHHHHT-
T ss_pred CHHHHHHHHHHHHHH-------hccCcc----CCCcEEEEEEeCCCCEE-EEEcCCccCccCCCccCHHHHHHHHHHHc-
Confidence 488888777666642 112243 135789864 89888 899976543 235789999999999875
Q ss_pred CCcccccccceeeeeccchhhhhhhhhhhcccCcEEEEecCCChhhHHHHHHcC
Q psy9259 366 PSTYRRVFESITVIVNVEPCIMCMAALLRVFESITVIVNVEPCIMCMAALLSLN 419 (489)
Q Consensus 366 ~~~~r~~~~s~~l~~~~ep~~l~~~~~~~~l~g~tLYvTlEPC~MCa~AIi~sg 419 (489)
|. + .+ ..++|+..||.||-..|.+.+
T Consensus 115 G~--~------------------------~~--~~iav~~~PCG~CRQ~l~E~~ 140 (294)
T 1ctt_A 115 GE--K------------------------AL--AAITVNYTPCGHCRQFMNELN 140 (294)
T ss_dssp TC--C------------------------CE--EEEEESSCCCHHHHHHHTTBT
T ss_pred CC--C------------------------cE--EEEEEEcCCCHHHHHHHHHhC
Confidence 32 1 12 356678899999999999986
No 34
>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A*
Probab=96.85 E-value=0.0049 Score=61.91 Aligned_cols=70 Identities=17% Similarity=0.079 Sum_probs=54.8
Q ss_pred CeEEEEE---CCcEEEEeeCCCCCCCCCchHHHHHHHHHHHHHCCCcccccccceeeeeccchhhhhhhhhhhcccCcEE
Q psy9259 325 RTLGFTV---DERSKTRGMNEVNATKNATRHAEMVCIDHIVRQYPSTYRRVFESITVIVNVEPCIMCMAALLRVFESITV 401 (489)
Q Consensus 325 ~~VGaVi---dG~IIa~G~N~~~~~~dpt~HAE~~AI~~a~~~l~~~~r~~~~s~~l~~~~ep~~l~~~~~~~~l~g~tL 401 (489)
.+|||.+ ||+|+ +|.|-.+...+++.|||..||.++... |.+. ..++...+
T Consensus 209 f~VGAAl~~~dG~i~-tG~NvEnasy~~tlCAEr~Ai~~av~~-G~~~------------------------~~i~~i~v 262 (294)
T 1ctt_A 209 SPSGVALECKDGRIF-SGSYAENAAFNPTLPPLQGALILLNLK-GYDY------------------------PDIQRAVL 262 (294)
T ss_dssp CCEEEEEEETTSCEE-EEECBCCTTSTTCBCHHHHHHHHHHHT-TCCG------------------------GGEEEEEE
T ss_pred CceEEEEEeCCCCEE-EEEeeecCCCCCccCHHHHHHHHHHHc-CCCc------------------------CCEEEEEE
Confidence 5789864 78655 799999888899999999999999864 2111 12566778
Q ss_pred EEecC----CChhhHHHHHHcCC
Q psy9259 402 IVNVE----PCIMCMAALLSLNI 420 (489)
Q Consensus 402 YvTlE----PC~MCa~AIi~sgI 420 (489)
|.+.+ ||.||-..|...+-
T Consensus 263 v~~~~~~~sPCG~CRq~L~ef~~ 285 (294)
T 1ctt_A 263 AEKADAPLIQWDATSATLKALGC 285 (294)
T ss_dssp EECTTCSSCCHHHHHHHHHHHTC
T ss_pred EecCCCCcCccHHHHHHHHHHCC
Confidence 87776 99999999999764
No 35
>2c2q_A G/U mismatch-specific DNA glycosylase; radiation resistance, DNA repair enzymes, uracil-DNA glycosylase, MUG, hydrolase; 1.7A {Deinococcus radiodurans} PDB: 2c2p_A
Probab=96.12 E-value=0.0051 Score=58.38 Aligned_cols=136 Identities=10% Similarity=0.127 Sum_probs=74.4
Q ss_pred hcCCCcEEEEeecCCCccccccCcccCChhhhhhhhcccCCCCCCcccCCCCCcCCCCCCccccchhHHHHHHHHhhCCc
Q psy9259 111 CNSKKKILFLGMNPGPWGMVQCGIPFGEVKAVKGFLNIEGKVNQPEKFHKDRPIKGLDCPRSEISGKRLWELASQLSDGK 190 (489)
Q Consensus 111 ~~~~~rvl~lGmnPGp~Gm~qTGvPFgd~~~vr~wlgi~~~v~~p~~ehp~rpv~g~~c~~~evSg~r~w~~~~~~~~g~ 190 (489)
++...||||||.|||..- ..+|--|+...- |||..+-.. +=+
T Consensus 22 l~~~~rvLilGs~Pg~~S-~~~g~yYahp~N------------------------------------~FW~il~~~-g~~ 63 (199)
T 2c2q_A 22 LQPGLTLVLVGTAPSGIS-ARARAYYANPEN------------------------------------KFWRTLHAV-GLT 63 (199)
T ss_dssp CCTTCSEEEEESCCCHHH-HHHTSSSCSTTC------------------------------------CHHHHHHHT-TSS
T ss_pred cCCCCcEEEEecCcChhh-hhcCCccCCCCC------------------------------------cHHHHHHHc-CCC
Confidence 456789999999999765 888888887641 444444432 112
Q ss_pred hhhhh-------hhch--hhccccccccccCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHhhcCceEEEEechHHHHHH
Q psy9259 191 AADFF-------KHAY--VHNYFPLAFVSKTATNITPAELKNKTTIEKLNSICDKSLSDIVKHLGIETVIAIGKFAETRA 261 (489)
Q Consensus 191 ~~~F~-------~~~f--v~n~cPL~f~~~~g~n~tp~~l~~~~~~~~l~~~c~~~L~~~i~~l~~~~vv~vG~~a~~~~ 261 (489)
+..++ .++= +.|+|- +++ .+ -.+|+.. |... .-|.+.|+..++++|+..|+-|.+.+
T Consensus 64 ~~~~~~~~~~~L~~~gIgl~Dvv~----R~~-s~--ds~l~~~-e~~~------~~l~~~l~~~~~~~I~f~G~~A~~~~ 129 (199)
T 2c2q_A 64 PRQLVPQEYATLPQYGLGLTDVAK----RHS-GV--AAALPGE-AWRP------DELRRKVEHYRPRIVAFTSKRGASET 129 (199)
T ss_dssp SSCCCGGGGGGGGGGTEEEEESCC----SCC-SC--GGGSCGG-GCCH------HHHHHHHHHHCCSEEEESSHHHHHHH
T ss_pred cccCCHHHHHHHHHCCEEEeEEee----cCC-CC--hhhcccc-ccch------hhHHHHHHHCCCCEEEEeCHHHHHHH
Confidence 22221 1111 122221 222 21 3444444 2211 34555555458999999999877544
Q ss_pred H-HHHHh--cc-----cc---cceEeeecCCCCC-C-CCCCchhhHHHHH
Q psy9259 262 E-KALKS--NR-----IF---TVKVTSISHPSPR-N-PASNKNWVENTTK 298 (489)
Q Consensus 262 ~-~~~~~--~~-----~~---~v~V~~L~HPSpr-n-p~anr~W~E~a~~ 298 (489)
. +.++. ++ .. +.++.++|-+|++ | .-.-.-|.+++..
T Consensus 130 ~~~~~~~~~~g~q~~~~~~~~~~~~~vLPStS~a~na~~s~e~w~~k~~~ 179 (199)
T 2c2q_A 130 LGVPTGKLPYGPQPQPLDWPAETELWVLPSTSPLGHNHFRLEPWQALGDR 179 (199)
T ss_dssp HCSCGGGCCSEECCCCSSCCTTCEEEECCCCSGGGTTTCCSHHHHHHHHH
T ss_pred HhhcccccccccccccccccCCceEEEeCCCChhhcccCChHHHHHHHHH
Confidence 1 11111 11 11 3789999999998 5 3333336666543
No 36
>2l3f_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Methanosarcina acetivorans}
Probab=95.50 E-value=0.0078 Score=55.56 Aligned_cols=121 Identities=15% Similarity=0.212 Sum_probs=70.4
Q ss_pred hcCCCcEEEEeecCCCccccccCcccCChhhhhhhhcccCCCCCCcccCCCCCcCCCCCCccccchhHHHHHHHHhhCCc
Q psy9259 111 CNSKKKILFLGMNPGPWGMVQCGIPFGEVKAVKGFLNIEGKVNQPEKFHKDRPIKGLDCPRSEISGKRLWELASQLSDGK 190 (489)
Q Consensus 111 ~~~~~rvl~lGmnPGp~Gm~qTGvPFgd~~~vr~wlgi~~~v~~p~~ehp~rpv~g~~c~~~evSg~r~w~~~~~~~~g~ 190 (489)
++...||||||.|||..- .++|-.|+... -|||..+-..+ |-
T Consensus 10 ~~~~~~vLilGs~Pg~~S-~~~g~yYa~p~------------------------------------N~FW~il~~~~-g~ 51 (166)
T 2l3f_A 10 LDENTEILILGSLPSDES-IRKQQYYGNPG------------------------------------NDFWRLVGHAI-GE 51 (166)
T ss_dssp CCSSCSEEEEESSCCHHH-HHHTSGGGSTT------------------------------------CTHHHHHHHHH-TS
T ss_pred cCCCCcEEEEecCCChhH-HhcCCCCCCCC------------------------------------CcHHHHHHHHh-CC
Confidence 455789999999999987 88888887653 18888888887 44
Q ss_pred h--hhhh-------hhchhhccccccc-cccCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHh-hcCceEEEEechHHHH
Q psy9259 191 A--ADFF-------KHAYVHNYFPLAF-VSKTATNITPAELKNKTTIEKLNSICDKSLSDIVK-HLGIETVIAIGKFAET 259 (489)
Q Consensus 191 ~--~~F~-------~~~fv~n~cPL~f-~~~~g~n~tp~~l~~~~~~~~l~~~c~~~L~~~i~-~l~~~~vv~vG~~a~~ 259 (489)
. ..=| .++=|. ++-++= ++-.| -.-.+++.. +.. -|.+.++ ..+++.|+..|+-|.+
T Consensus 52 ~~~~~~~~~~~~~L~~~gIg-l~Dvv~~~~r~g--ssd~~i~~~-~~~--------dl~~i~~~~P~i~~I~f~G~~a~~ 119 (166)
T 2l3f_A 52 NLQDMAYEKKLKTLKHNRIG-LWDVFKAGSREG--SQDSKIGDE-EIN--------DFSGLKEMVPKLRLICFNGRKAGE 119 (166)
T ss_dssp CSTTSCHHHHHHHHHHTTEE-EEESEEEECCCS--SSSCCCCCC-EEC--------CCTTHHHHCSSCCEEEEESHHHHT
T ss_pred CCccCCHHHHHHHHHHcCEe-eeeeehhhccCC--CCHHHHHhc-chh--------HHHHHHHhCCCCcEEEEcCHHHHH
Confidence 2 1111 111111 111111 11111 122333322 111 1222233 4557999999998876
Q ss_pred HHHHHHHhcccccceEeeecCCCCCC
Q psy9259 260 RAEKALKSNRIFTVKVTSISHPSPRN 285 (489)
Q Consensus 260 ~~~~~~~~~~~~~v~V~~L~HPSprn 285 (489)
.+.+.. ..+.++.++|-||+++
T Consensus 120 ~~~k~~----~~~~~~~vLPStS~an 141 (166)
T 2l3f_A 120 YEPLLR----GMGYETKVLPSSSGAN 141 (166)
T ss_dssp THHHHG----GGTCEEEEECCCSHHH
T ss_pred HHHHhc----CCCceEEEeCCCCccc
Confidence 554321 2257999999999985
No 37
>3dmo_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 1.60A {Burkholderia pseudomallei}
Probab=94.91 E-value=0.16 Score=45.60 Aligned_cols=39 Identities=21% Similarity=0.176 Sum_probs=31.9
Q ss_pred CeEEEEE---CCcEEEEeeCCCCCCCCCchHHHHHHHHHHHHH
Q psy9259 325 RTLGFTV---DERSKTRGMNEVNATKNATRHAEMVCIDHIVRQ 364 (489)
Q Consensus 325 ~~VGaVi---dG~IIa~G~N~~~~~~dpt~HAE~~AI~~a~~~ 364 (489)
-+|||.+ ||+|+ +|.|-.+.+-..+-+||..||-++...
T Consensus 32 F~VGAAll~~dG~iy-tG~NVEnasy~~t~CAEr~Ai~~Avs~ 73 (138)
T 3dmo_A 32 FKVGAALVTNDGKVF-HGCNVENASYGLCNCAERTALFSALAA 73 (138)
T ss_dssp CCEEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHT
T ss_pred CCEEEEEEeCCCCEE-EEEeecccccccccCHHHHHHHHHHHc
Confidence 5789864 89976 889987766667889999999999875
No 38
>3v4k_A DNA DC->DU-editing enzyme apobec-3G; antiviral defense, HOST-virus interaction, hydrola metal-binding, nucleus; HET: DNA; 1.38A {Homo sapiens} PDB: 3v4j_A* 3ir2_A* 2kem_A* 2jyw_A* 2kbo_A* 3e1u_A* 3iqs_A*
Probab=92.93 E-value=0.088 Score=50.13 Aligned_cols=99 Identities=16% Similarity=0.202 Sum_probs=59.1
Q ss_pred CchHHHHHHHHHHHHH-CCCcccccccceeeeeccchhhhhhhhhhhcccCcEEEEecCCChhhHHHHHHc-----CCCE
Q psy9259 349 ATRHAEMVCIDHIVRQ-YPSTYRRVFESITVIVNVEPCIMCMAALLRVFESITVIVNVEPCIMCMAALLSL-----NIRT 422 (489)
Q Consensus 349 pt~HAE~~AI~~a~~~-l~~~~r~~~~s~~l~~~~ep~~l~~~~~~~~l~g~tLYvTlEPC~MCa~AIi~s-----gIkr 422 (489)
...|||+.-|++.... +..+ ..=..|-|+|-.||+-||..|+.. ++.-
T Consensus 77 ~~~HAEl~FL~~~~~~~Ld~~--------------------------~~Y~vTwy~SWSPC~~CA~~v~~FL~~~~~v~L 130 (203)
T 3v4k_A 77 EGRHAELCFLDVIPFWKLDLD--------------------------QDYRVTCFTSWSPCFSCAQEMAKFISKNKHVSL 130 (203)
T ss_pred CCCcHHHHHHHHhhhccCCCC--------------------------CeEEEEEEEeCCChHHHHHHHHHHHhhCCCeEE
Confidence 3579999999887642 2111 011468999999999999999875 3443
Q ss_pred EEEEee----CC--cccccccCCcccCCCeEEEecCCCCCCcHHHHHHHHHHhhhh-cCCCCCccccc
Q psy9259 423 IVFACS----ND--RFGYNVLGSDEKTNYIEIVENTDDNTPKDDAVIQNIKVNSAI-TNPNTPIEKPT 483 (489)
Q Consensus 423 VVyg~~----d~--~~Gg~il~~~~~~~~ieV~~gv~~~~~~~ee~~~Ll~~F~~~-~np~~P~~k~k 483 (489)
.+|++. ++ .-|-..|... -..+.|.. -+|-..-.+.|-.. ++|+.||++.+
T Consensus 131 ~If~aRLY~~~~~~~~gLr~L~~a--G~~v~iM~--------~~ef~~CW~~FV~nqg~pF~PW~~L~ 188 (203)
T 3v4k_A 131 CIKTARIYDDQGRCQEGLRTLAEA--GAKISIMT--------YSEFKHCWDTFVDHQGAPFQPWDGLD 188 (203)
T ss_pred EEEEEeecccCchHHHHHHHHHHC--CCeEEecC--------HHHHHHHHHHHccCCCCCCCchhHHH
Confidence 444432 22 1221222221 12334443 34566667777544 68999998754
No 39
>3oj6_A Blasticidin-S deaminase; ssgcid, seattle structural genomics for infectious disease, hydrolase; 1.70A {Coccidioides immitis}
Probab=92.72 E-value=0.39 Score=43.99 Aligned_cols=37 Identities=22% Similarity=0.214 Sum_probs=29.6
Q ss_pred CeEEEEE---CCcEEEEeeCCCCCCCCCchHHHHHHHHHHHHH
Q psy9259 325 RTLGFTV---DERSKTRGMNEVNATKNATRHAEMVCIDHIVRQ 364 (489)
Q Consensus 325 ~~VGaVi---dG~IIa~G~N~~~~~~dpt~HAE~~AI~~a~~~ 364 (489)
.+|||.+ ||+|+ +|.|-.+ -..+.+||..||-+|...
T Consensus 51 f~VGAAll~~dG~i~-tG~NVEn--~~~~lCAEr~Ai~~Avs~ 90 (158)
T 3oj6_A 51 YSVASAAISDDGRVF-SGVNVYH--FNGGPCAELVVLGVAAAA 90 (158)
T ss_dssp SCEEEEEEETTSCEE-EEECCCC--TTTCCCHHHHHHHHHHHT
T ss_pred CcEEEEEEeCCCCEE-EEEcccc--CCccccHHHHHHHHHHHh
Confidence 3689864 89988 8999754 346789999999999875
No 40
>3a7n_A UDG, uracil-DNA glycosylase; UNG-UGI interactions, UNG-DNA complex, citrate AS protein LI ligand binding, inhibitor design; HET: FLC; 1.95A {Mycobacterium tuberculosis H37RV} PDB: 2zhx_A*
Probab=91.05 E-value=1.2 Score=43.45 Aligned_cols=69 Identities=14% Similarity=0.169 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHh-hcCceEEEEechHHHHHHHHHHHhcccccceEeeecCCCCCCCCCCchh-----hHHHHHHHHhcC
Q psy9259 231 NSICDKSLSDIVK-HLGIETVIAIGKFAETRAEKALKSNRIFTVKVTSISHPSPRNPASNKNW-----VENTTKKLKDLG 304 (489)
Q Consensus 231 ~~~c~~~L~~~i~-~l~~~~vv~vG~~a~~~~~~~~~~~~~~~v~V~~L~HPSprnp~anr~W-----~E~a~~aLeEAg 304 (489)
|+...+.+.+.|. .-++=|.+.-|++|++....+ .. . .-.|+...||||.+ +++++ -.++.+.|++.|
T Consensus 156 We~fTd~vI~~l~~~~~~vVFiLWG~~Aq~k~~~I-~~-~--~h~vl~s~HPSPLS--a~rgFfg~~~Fs~~N~~L~~~g 229 (238)
T 3a7n_A 156 WEAVTECAIRALAARAAPLVAILWGRDASTLKPML-AA-G--NCVAIESPHPSPLS--ASRGFFGSRPFSRANELLVGMG 229 (238)
T ss_dssp HHHHHHHHHHHHHHSSSCEEEEEESHHHHTTHHHH-TT-S--SEEEEEECCSSTTT--GGGTTTTCCHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHhcCCCeEEEEECHHHHHhhccc-Cc-C--CceEEecCCCCccc--cCCCCCCCChHHHHHHHHHHcC
Confidence 5555455556654 455667888899998766544 11 1 24689999999985 34444 356667777776
Q ss_pred c
Q psy9259 305 V 305 (489)
Q Consensus 305 v 305 (489)
.
T Consensus 230 ~ 230 (238)
T 3a7n_A 230 A 230 (238)
T ss_dssp C
T ss_pred C
Confidence 4
No 41
>4eg2_A Cytidine deaminase; UMP synthesis, Zn binding, hydrolase; HET: URI; 2.20A {Vibrio cholerae}
Probab=90.31 E-value=0.5 Score=47.43 Aligned_cols=66 Identities=24% Similarity=0.255 Sum_probs=47.8
Q ss_pred CeEEEEE---CCcEEEEeeCCCCC--CCCCchHHHHHHHHHHHHHCCCcccccccceeeeeccchhhhhhhhhhhcccCc
Q psy9259 325 RTLGFTV---DERSKTRGMNEVNA--TKNATRHAEMVCIDHIVRQYPSTYRRVFESITVIVNVEPCIMCMAALLRVFESI 399 (489)
Q Consensus 325 ~~VGaVi---dG~IIa~G~N~~~~--~~dpt~HAE~~AI~~a~~~l~~~~r~~~~s~~l~~~~ep~~l~~~~~~~~l~g~ 399 (489)
-+|||.+ ||+|+ +|.|-.+. .-..+-|||..||-++...-..+ + .
T Consensus 74 F~VGAAll~~dG~i~-~G~NvEna~as~~~t~CAEr~Ai~~Av~~G~~~---------------------------i--~ 123 (298)
T 4eg2_A 74 FYVGAIVRGISGRLY-LGANMEFTGAQLGQTVHAEQCAISHAWMKGEKG---------------------------V--A 123 (298)
T ss_dssp CCCEEEEEETTSCEE-EEECBCCTTSCGGGCBCHHHHHHHHHHHTTCSC---------------------------E--E
T ss_pred CcEEEEEEECCCcEE-EEEcccccccccCccccHHHHHHHHHHhCCCCc---------------------------e--E
Confidence 5789864 89876 78886532 22347899999999998752111 2 2
Q ss_pred EEEEecCCChhhHHHHHHcCC
Q psy9259 400 TVIVNVEPCIMCMAALLSLNI 420 (489)
Q Consensus 400 tLYvTlEPC~MCa~AIi~sgI 420 (489)
.|.+..-||.+|--.|.+.+-
T Consensus 124 ~iav~~~PCG~CRQ~l~Ef~~ 144 (298)
T 4eg2_A 124 DITINFSPCGHCRQFMNELTT 144 (298)
T ss_dssp EEEESSCCCHHHHHHHTTBTT
T ss_pred EEEeecCCCHHHHHHHHHhcC
Confidence 355668999999999999864
No 42
>3tr7_A UDG, uracil-DNA glycosylase; DNA metabolism, hydrolase; 2.20A {Coxiella burnetii}
Probab=84.48 E-value=3.4 Score=40.01 Aligned_cols=69 Identities=13% Similarity=0.283 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHh-hcCceEEEEechHHHHHHHHHHHhcccccceEeeecCCCCCCCCCCchh-----hHHHHHHHHhcC
Q psy9259 231 NSICDKSLSDIVK-HLGIETVIAIGKFAETRAEKALKSNRIFTVKVTSISHPSPRNPASNKNW-----VENTTKKLKDLG 304 (489)
Q Consensus 231 ~~~c~~~L~~~i~-~l~~~~vv~vG~~a~~~~~~~~~~~~~~~v~V~~L~HPSprnp~anr~W-----~E~a~~aLeEAg 304 (489)
|+...+.+.+.|. .-++=|.+.-|++|++....+ ....-.|+...||||.+ +++++ -.++.+.|++.|
T Consensus 146 We~fTd~vI~~l~~~~~~vVFiLWG~~Aq~k~~~I----~~~~h~vl~s~HPSPLS--a~rgFfg~~~Fsk~N~~L~~~g 219 (232)
T 3tr7_A 146 WHRFTDKVIESLNDHPEGIVFLLWGSYAQKKSQLI----TNLRHRILKAPHPSPLS--AARGFLGCRHFSKANQLLHEMG 219 (232)
T ss_dssp HHHHHHHHHHHGGGCSSCCEEEEESHHHHHGGGGC----CCTTSEEEEECCSCTTC--SSCCSTTCCHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHhcCCCeEEEEeCHHHHhchhcC----CCCCeeEEEeCCCCccc--cccCCCCCCHHHHHHHHHHHcC
Confidence 5555556666664 445568889999988654422 11124689999999974 34443 466667787776
Q ss_pred c
Q psy9259 305 V 305 (489)
Q Consensus 305 v 305 (489)
.
T Consensus 220 ~ 220 (232)
T 3tr7_A 220 R 220 (232)
T ss_dssp S
T ss_pred C
Confidence 4
No 43
>3fci_A UDG, uracil-DNA glycosylase; DNA repair, alternative splicing, disease mutation, DNA damage, glycosidase, HOST- virus interaction, hydrolase; HET: 3FI; 1.27A {Homo sapiens} PDB: 1emh_A* 1emj_A* 1q3f_A* 1ssp_E* 1ugh_E 1akz_A* 2oxm_A* 2oyt_A* 3fcf_A* 2hxm_A* 3fck_B* 3fcl_A* 2ssp_E* 1yuo_A 3tkb_A 4skn_E* 1okb_A
Probab=84.43 E-value=2.6 Score=40.54 Aligned_cols=70 Identities=14% Similarity=0.179 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHh-hcCceEEEEechHHHHHHHHHHHhcccccceEeeecCCCCCCCCCCchh-----hHHHHHHHHhc
Q psy9259 230 LNSICDKSLSDIVK-HLGIETVIAIGKFAETRAEKALKSNRIFTVKVTSISHPSPRNPASNKNW-----VENTTKKLKDL 303 (489)
Q Consensus 230 l~~~c~~~L~~~i~-~l~~~~vv~vG~~a~~~~~~~~~~~~~~~v~V~~L~HPSprnp~anr~W-----~E~a~~aLeEA 303 (489)
-|+...+.+.+.|. .-++=|.+.-|++|++....+ ....-.|+...||||.+ +++++ -.++.+.|++.
T Consensus 140 GWe~fTd~vI~~l~~~~~~vVFiLWG~~Aq~k~~~i----~~~~h~vl~s~HPSPLS--a~rgFfg~~~Fs~~N~~L~~~ 213 (223)
T 3fci_A 140 GWEQFTDAVVSWLNQNSNGLVFLLWGSYAQKKGSAI----DRKRHHVLQTAHPSPLS--VYRGFFGCRHFSKTNELLQKS 213 (223)
T ss_dssp SHHHHHHHHHHHHHHHCCSCEEEEESHHHHHHTTTC----CTTTSEEEEECCSSTTT--GGGTTTTCCHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHhcCCCeEEEEECHHHHhchhcc----CCCCeeEEEeCCCChhh--cccCCCCCChHHHHHHHHHHc
Confidence 34544455555553 556678899999998654322 11124689999999974 34444 35666777776
Q ss_pred Cc
Q psy9259 304 GV 305 (489)
Q Consensus 304 gv 305 (489)
|.
T Consensus 214 g~ 215 (223)
T 3fci_A 214 GK 215 (223)
T ss_dssp TC
T ss_pred CC
Confidence 63
No 44
>4eg2_A Cytidine deaminase; UMP synthesis, Zn binding, hydrolase; HET: URI; 2.20A {Vibrio cholerae}
Probab=83.59 E-value=4.1 Score=40.82 Aligned_cols=91 Identities=14% Similarity=0.164 Sum_probs=58.8
Q ss_pred hhhHHHHHHHHhcCccccccccccccccCCCCCCCeEEEEE---CCcEEEEeeCCCCCCCCCchHHHHHHHHHHHHHCCC
Q psy9259 291 NWVENTTKKLKDLGVLHYFTSESQNIPNHEHCNHRTLGFTV---DERSKTRGMNEVNATKNATRHAEMVCIDHIVRQYPS 367 (489)
Q Consensus 291 ~W~E~a~~aLeEAgvL~~L~~ea~evP~~s~C~~~~VGaVi---dG~IIa~G~N~~~~~~dpt~HAE~~AI~~a~~~l~~ 367 (489)
.|.+....+++.+.. .-.|. |+ .+|||.+ ||+|. +|.|-.+...+++..||..||-++... |.
T Consensus 191 ~~~~L~~~A~~a~~~--------ayaPY-S~---~~vGAAl~t~dG~iy-tG~nvEnAay~~slcAEr~Al~~av~~-G~ 256 (298)
T 4eg2_A 191 DDEELIQQALRAMNI--------SHSPY-TQ---NFSGVALKMRSGAIY-LGAYAENAAFNPSLPPLQVALAQAMMM-GE 256 (298)
T ss_dssp CCCHHHHHHHHHHTT--------CBCTT-TC---CCEEEEEEETTSCEE-EEECBCCTTSTTCBCHHHHHHHHHHHT-TC
T ss_pred CHHHHHHHHHHHHHh--------ccCCc-cC---CCeEEEEEeCCCCEE-EEEeeeccccCCCCCHHHHHHHHHHHC-CC
Confidence 477766665555431 12243 22 4788754 88876 788988888899999999999998764 32
Q ss_pred cccccccceeeeeccchhhhhhhhhhhcccCcEEEE----ecCCChhhHHHHHHcC
Q psy9259 368 TYRRVFESITVIVNVEPCIMCMAALLRVFESITVIV----NVEPCIMCMAALLSLN 419 (489)
Q Consensus 368 ~~r~~~~s~~l~~~~ep~~l~~~~~~~~l~g~tLYv----TlEPC~MCa~AIi~sg 419 (489)
+.+. ++...++- .+-||.+|-..|...+
T Consensus 257 ~~~~------------------------i~aiv~v~~~~~~~sPCG~CRqvL~e~~ 288 (298)
T 4eg2_A 257 SFED------------------------IEAAALVESATGKISHLADTQATLEVIN 288 (298)
T ss_dssp CGGG------------------------EEEEEEEECTTCSSCCHHHHHHHHHHHC
T ss_pred CccC------------------------eEEEEEEeCCCCCcCCcHHHHHHHHHhC
Confidence 2111 12222222 2459999999998875
No 45
>2owr_A UDG, uracil-DNA glycosylase; uracil-DNA glycosylase fold in the core: 3 layers (A/B/A); HET: EPE; 2.30A {Vaccinia virus} PDB: 2owq_A 3nt7_C
Probab=83.52 E-value=15 Score=35.10 Aligned_cols=81 Identities=11% Similarity=-0.100 Sum_probs=49.1
Q ss_pred CCCCCCCCChhhHHHHHHHHHHHHHHHHhhcCceEEEEechHHHHHHHHHHHhcccccceEeeecCCCCCCCCCCchh--
Q psy9259 215 NITPAELKNKTTIEKLNSICDKSLSDIVKHLGIETVIAIGKFAETRAEKALKSNRIFTVKVTSISHPSPRNPASNKNW-- 292 (489)
Q Consensus 215 n~tp~~l~~~~~~~~l~~~c~~~L~~~i~~l~~~~vv~vG~~a~~~~~~~~~~~~~~~v~V~~L~HPSprnp~anr~W-- 292 (489)
-+|-..-++..-+.. |+...+.+.+.|..-++=|.+.-|++|++....+ .... .|+...||||+ ++++
T Consensus 122 vLTV~~g~a~SH~~~-We~fTd~vI~~l~~~~~vVFiLWG~~Aq~k~~~I----~~~~-~vl~s~HPSPa----~rgFfg 191 (218)
T 2owr_A 122 YLSCKLGETKSHAIY-WDKISKLLLQHITKHVSVLYCLGKTDFSNIRAKL----ESPV-TTIVGYHPAAR----DRQFEK 191 (218)
T ss_dssp SSCEETTCTTTTHHH-HHHHHHHHHHHHTTTCSEEEEECHHHHHHHHHHC----SCCC-EEEEECCTTC--------CCC
T ss_pred eEEEeCCCCchHHHH-HHHHHHHHHHHHHhcCCEEEEEeCHHHHHHHhcc----CCCC-cEEEecCCCcC----CCCCCC
Confidence 344433344324555 8877788888876444555666689888765432 1113 78999999993 4444
Q ss_pred ---hHHHHHHHHhcCc
Q psy9259 293 ---VENTTKKLKDLGV 305 (489)
Q Consensus 293 ---~E~a~~aLeEAgv 305 (489)
-.++.+.|++.|.
T Consensus 192 ~~~Fs~~N~~L~~~g~ 207 (218)
T 2owr_A 192 DRSFEIINVLLELDNK 207 (218)
T ss_dssp CCCCHHHHHHHHTTTS
T ss_pred CChHHHHHHHHHHcCC
Confidence 3567778887764
No 46
>3vow_A Probable DNA DC->DU-editing enzyme apobec-3C; antiviral deffense, HOST-virus interaction, metal- HIV-1 VIF, BET, single domain, sivagm, hydrolase; 2.15A {Homo sapiens} PDB: 3vm8_A
Probab=77.55 E-value=1.6 Score=41.03 Aligned_cols=100 Identities=16% Similarity=0.221 Sum_probs=62.1
Q ss_pred CCchHHHHHHHHHHHHH-CCCcccccccceeeeeccchhhhhhhhhhhcccCcEEEEecCCChhhHHHHHHc-----CCC
Q psy9259 348 NATRHAEMVCIDHIVRQ-YPSTYRRVFESITVIVNVEPCIMCMAALLRVFESITVIVNVEPCIMCMAALLSL-----NIR 421 (489)
Q Consensus 348 dpt~HAE~~AI~~a~~~-l~~~~r~~~~s~~l~~~~ep~~l~~~~~~~~l~g~tLYvTlEPC~MCa~AIi~s-----gIk 421 (489)
.+..|||+.=|...... +..+. .=..|-|+|-.||+-||..|... ++.
T Consensus 62 ~~~~HAE~~Fl~~~~~~~L~~~~--------------------------~y~VTwy~SwSPC~~CA~~va~FL~~~~~v~ 115 (190)
T 3vow_A 62 ETHCHAERCFLSWFCDDILSPNT--------------------------KYQVTWYTSWSPCPDCAGEVAEFLARHSNVN 115 (190)
T ss_dssp CGGGSHHHHHHHHHSSTTSCTTS--------------------------EEEEEEEEEECCCHHHHHHHHHHHHHCTTEE
T ss_pred cccccHHHHHHHHHhhcCCCCCc--------------------------eEEEEEEEeCCchHHHHHHHHHHHHhCCCeE
Confidence 45689999999886532 21110 11368999999999999998864 666
Q ss_pred EEEEEeeCCcc-------cccccCCcccCCCeEEEecCCCCCCcHHHHHHHHHHhh-hhcCCCCCccccc
Q psy9259 422 TIVFACSNDRF-------GYNVLGSDEKTNYIEIVENTDDNTPKDDAVIQNIKVNS-AITNPNTPIEKPT 483 (489)
Q Consensus 422 rVVyg~~d~~~-------Gg~il~~~~~~~~ieV~~gv~~~~~~~ee~~~Ll~~F~-~~~np~~P~~k~k 483 (489)
-.+|+++--.. |-..|... -..+.|.. -+|-..--+.|- .++.|+.||++.+
T Consensus 116 L~If~aRLY~~~~~~~q~gLr~L~~~--G~~v~iM~--------~~eF~~CW~~FVd~~~~~F~PW~~L~ 175 (190)
T 3vow_A 116 LTIFTARLYYFQYPCYQEGLRSLSQE--GVAVEIMD--------YEDFKYCWENFVYNDNEPFKPWKGLK 175 (190)
T ss_dssp EEEEEEECTTTTSHHHHHHHHHHHHH--TCEEEECC--------HHHHHHHHHHHBCCTTCCCCCCTTHH
T ss_pred EEEEEEecccccCchHHHHHHHHHHC--CCcEEEeC--------hHHHHHHHHHhccCCCCCCCcchhHh
Confidence 67777754332 11122211 13345543 344555566774 4578999999854
No 47
>3uf7_A UDG, uracil-DNA glycosylase; glycosylase, SSB C-terminal, base excision repair, hydrolase; HET: SO4; 1.20A {Escherichia coli} PDB: 1uug_A 1lqj_A 1lqm_A 1lqg_A 2uug_A 1eui_A 1eug_A 4eug_A 5eug_A 3eug_A 2eug_A 1flz_A 2jhq_A
Probab=77.06 E-value=6.2 Score=38.30 Aligned_cols=69 Identities=14% Similarity=0.176 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHh-hcCceEEEEechHHHHHHHHHHHhcccccceEeeecCCCCCCCCCCchhh-----HHHHHHHHhcC
Q psy9259 231 NSICDKSLSDIVK-HLGIETVIAIGKFAETRAEKALKSNRIFTVKVTSISHPSPRNPASNKNWV-----ENTTKKLKDLG 304 (489)
Q Consensus 231 ~~~c~~~L~~~i~-~l~~~~vv~vG~~a~~~~~~~~~~~~~~~v~V~~L~HPSprnp~anr~W~-----E~a~~aLeEAg 304 (489)
|+...+.+.+.|. .-++=|.+.-|++|++....+- ...-.|+...||||.+ ++++|. .++.+.|++.|
T Consensus 141 We~fTd~vI~~l~~~~~~vVFlLWG~~Aq~k~~~i~----~~~h~il~s~HPSPlS--a~rgFfg~~~Fsk~N~~L~~~g 214 (237)
T 3uf7_A 141 WETFTDKVISLINQHREGVVFLLWGSHAQKKGAIID----KQRHHVLKAPHPSPLS--AHRGFFGCNHFVLANQWLEQRG 214 (237)
T ss_dssp HHHHHHHHHHHHHHHCSSCEEEEESHHHHHHTTTSC----TTTSEEEEECCSSTTT--GGGTTTTCCHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHhCCCCcEEEEecHHHHHhhhccC----CcCceEEeCCCCCccc--cccCCCCCCHHHHHHHHHHHcC
Confidence 5544455555664 4556678889999886543221 1112488999999985 356554 66677788876
Q ss_pred c
Q psy9259 305 V 305 (489)
Q Consensus 305 v 305 (489)
.
T Consensus 215 ~ 215 (237)
T 3uf7_A 215 E 215 (237)
T ss_dssp C
T ss_pred C
Confidence 4
No 48
>2j8x_A Uracil-DNA glycosylase; hydrolase-inhibitor complex, hydrolase/inhibitor complex, EB repair, lytic protein, epstein-BARR virus; 2.3A {Epstein-barr virus} SCOP: c.18.1.1
Probab=75.78 E-value=2.7 Score=40.63 Aligned_cols=71 Identities=15% Similarity=0.169 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHh-hcCceEEEEechHHHHHHHHHHHhcccccceEeeecCCCCCCC-----CCCchh-----hHHHHHH
Q psy9259 231 NSICDKSLSDIVK-HLGIETVIAIGKFAETRAEKALKSNRIFTVKVTSISHPSPRNP-----ASNKNW-----VENTTKK 299 (489)
Q Consensus 231 ~~~c~~~L~~~i~-~l~~~~vv~vG~~a~~~~~~~~~~~~~~~v~V~~L~HPSprnp-----~anr~W-----~E~a~~a 299 (489)
|+...+.+.+.|. .-++=|.+.-|++|++....+- ...-.|+...||||.+. .+++++ -.++.+.
T Consensus 143 We~fTd~vI~~l~~~~~~vVFiLWG~~Aq~k~~~i~----~~~h~vl~s~HPSPlSa~~~~~~~~rgFfg~~~Fs~~N~~ 218 (231)
T 2j8x_A 143 WAWFTDHVISLLSERLKACVFMLWGAKAGDKASLIN----SKKHLVLTSQHPSPLAQNSTRKSAQQKFLGNNHFVLANNF 218 (231)
T ss_dssp HHHHHHHHHHHHHHHCSSCEEEEESHHHHGGGGGSC----TTTSEEEEECCSSGGGGGCCSSCSSCCSTTCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCeEEEEcCHHHHHHHhcCC----CCCceEEEcCCCChhhcccccccCCCCCCCCCHHHHHHHH
Confidence 4444455555554 4455667778999886544321 11246899999999753 124444 3566677
Q ss_pred HHhcCc
Q psy9259 300 LKDLGV 305 (489)
Q Consensus 300 LeEAgv 305 (489)
|++.|.
T Consensus 219 L~~~g~ 224 (231)
T 2j8x_A 219 LREKGL 224 (231)
T ss_dssp HHHTTC
T ss_pred HHHcCC
Confidence 777663
No 49
>3cxm_A Uracil-DNA glycosylase; base excision repair, BER, DNA damage repair, MS SGPP, hydrolase, 5-bromouracil; 1.50A {Leishmania naiffi}
Probab=73.30 E-value=3.1 Score=41.12 Aligned_cols=69 Identities=16% Similarity=0.234 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHhh-cCceEE-EEechHHHHHHHHHHHhcccccceEeeecCCCCCCCCCCchh-----hHHHHHHHHhc
Q psy9259 231 NSICDKSLSDIVKH-LGIETV-IAIGKFAETRAEKALKSNRIFTVKVTSISHPSPRNPASNKNW-----VENTTKKLKDL 303 (489)
Q Consensus 231 ~~~c~~~L~~~i~~-l~~~~v-v~vG~~a~~~~~~~~~~~~~~~v~V~~L~HPSprnp~anr~W-----~E~a~~aLeEA 303 (489)
|+...+.+.+.|.. -+..+| +.-|++|++....+- ...-.|+...||||.+ +++++ -.++.+.|++.
T Consensus 179 We~fTd~vI~~l~~~~~~~vVFiLWG~~Aq~k~~lI~----~~~h~vl~s~HPSPLS--a~rgFfG~~hFs~~N~~L~~~ 252 (268)
T 3cxm_A 179 WAAFTDAVIQHLSQHHPNRLVFLLWGGYAQQKKRLID----ANRHVVLENVHPSPLS--ANRGWFGCRCFSACNEALQRM 252 (268)
T ss_dssp HHHHHHHHHHHHHHHCSSCCEEEEESHHHHGGGGGSC----TTTSEEEEECCSSHHH--HTTTTTTCCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhhCCCCeEEEEeCHHHHhhHhccC----CCCceEEEeCCCCccc--ccCCCCCCChHHHHHHHHHHc
Confidence 44444555555543 333444 455999886554321 1123589999999963 23333 35677778887
Q ss_pred Cc
Q psy9259 304 GV 305 (489)
Q Consensus 304 gv 305 (489)
|.
T Consensus 253 g~ 254 (268)
T 3cxm_A 253 SH 254 (268)
T ss_dssp TC
T ss_pred CC
Confidence 64
No 50
>1udg_A Uracil-DNA glycosylase; hydrolase; 1.75A {Herpes simplex virus} SCOP: c.18.1.1 PDB: 1lau_E 1udh_A 1udi_E 2c53_A* 2c56_A*
Probab=67.22 E-value=10 Score=36.90 Aligned_cols=67 Identities=13% Similarity=0.013 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHh-hcCceEEEEechHHHHHHHHHHHhcccccceEeeecCCCCCCCCCCchhh-----HHHHHHHHhcC
Q psy9259 231 NSICDKSLSDIVK-HLGIETVIAIGKFAETRAEKALKSNRIFTVKVTSISHPSPRNPASNKNWV-----ENTTKKLKDLG 304 (489)
Q Consensus 231 ~~~c~~~L~~~i~-~l~~~~vv~vG~~a~~~~~~~~~~~~~~~v~V~~L~HPSprnp~anr~W~-----E~a~~aLeEAg 304 (489)
|+...+.+.+.|. .-++=|.+.-|++|++... + ....-.|+...||||.+- + ++. .++.+.|++.|
T Consensus 165 We~fTd~vI~~l~~~~~~vVFiLWG~~Aq~k~~--i---~~~~h~vl~s~HPSPLSa--~-gFfg~~hFs~~N~~L~~~g 236 (244)
T 1udg_A 165 WDRFVGGVIRRLAARRPGLVFMLWGTHAQNAIR--P---DPRVHCVLKFSHPSPLSK--V-PFGTCQHFLVANRYLETRS 236 (244)
T ss_dssp HHHHHHHHHHHHHHHCSSCEEEEESHHHHHHCC--C---CTTTSEEEEECCSSTTSS--S-CGGGCCHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhcCCCeEEEEECHHHHhhCc--c---CCCCceEEecCCCCcccc--c-ccCCCCHHHHHHHHHHHcC
Confidence 4444455555554 4556678888999987542 1 111236888999999862 2 343 56667777766
Q ss_pred c
Q psy9259 305 V 305 (489)
Q Consensus 305 v 305 (489)
.
T Consensus 237 ~ 237 (244)
T 1udg_A 237 I 237 (244)
T ss_dssp C
T ss_pred C
Confidence 3
No 51
>2boo_A UDG, uracil-DNA glycosylase; base excision repair, radiation resistance, DNA damage, DNA glycosidase, hydrolase; 1.80A {Deinococcus radiodurans}
Probab=63.66 E-value=12 Score=36.53 Aligned_cols=71 Identities=17% Similarity=0.129 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHh-hcCceEEEEechHHHHHHHHHHHhcccccceEeeecCCCCCCCC--CCchhhHHHHHHHHhcCc
Q psy9259 231 NSICDKSLSDIVK-HLGIETVIAIGKFAETRAEKALKSNRIFTVKVTSISHPSPRNPA--SNKNWVENTTKKLKDLGV 305 (489)
Q Consensus 231 ~~~c~~~L~~~i~-~l~~~~vv~vG~~a~~~~~~~~~~~~~~~v~V~~L~HPSprnp~--anr~W~E~a~~aLeEAgv 305 (489)
|+...+.+.+.|. .-++=|.+.-|++|++....+ ....-.|+...||||.+-. -+.+--.++...|++.|.
T Consensus 160 We~fTd~vI~~l~~~~~~vVFiLWG~~Aq~k~~~I----~~~~h~vl~s~HPSPLSa~rFfg~~hFs~~N~~L~~~g~ 233 (247)
T 2boo_A 160 WEHFTDAVIKAVNAKEERVVFILWGSYARKKKKLI----TGKNHVVIESGHPSPLSEQYFFGTRPFSKTNEALEKAGR 233 (247)
T ss_dssp HHHHHHHHHHHHHTCSSCCEEEEESHHHHGGGGGC----CCTTCEEEEECCSSTTTGGGTTTCCHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHhcCCCeEEEEeCHHHHhhhhcc----CCCCceEEecCCCChhhhCcCCCCChHHHHHHHHHHcCC
Confidence 5555556666665 334455666799988654422 1112468999999997521 112233566777887764
No 52
>2eje_A General transcription factor II-I; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.76 E-value=49 Score=28.45 Aligned_cols=57 Identities=25% Similarity=0.384 Sum_probs=43.9
Q ss_pred HHHhcCCCcEEEEeecCCCccccccCcccCChh-----hhhhhhcccCCCCCCcccCCCCCcCCCCCCccccch
Q psy9259 108 YKYCNSKKKILFLGMNPGPWGMVQCGIPFGEVK-----AVKGFLNIEGKVNQPEKFHKDRPIKGLDCPRSEISG 176 (489)
Q Consensus 108 ~ky~~~~~rvl~lGmnPGp~Gm~qTGvPFgd~~-----~vr~wlgi~~~v~~p~~ehp~rpv~g~~c~~~evSg 176 (489)
+|+..++--|++-|+-+ ||||-.++ +++..|.-..... .--|||-.|+-|..-+++|
T Consensus 49 ~k~~~~P~~v~V~GLPe--------Gi~fr~P~~ygi~~L~~IL~~~~~Is----FvIkrPf~g~~~~~~~~~~ 110 (114)
T 2eje_A 49 RKITINPGCVVVDGMPP--------GVSFKAPSYLEISSMRRILDSAEFIK----FTVIRPFPGLVINNQLVSG 110 (114)
T ss_dssp HHHHHCSSSEEEECCCT--------TCCCCCTTTSCHHHHHHHHHTTTTCE----EEESSCCTTCCCSSCCCCC
T ss_pred HHHhcCCccEEeecCCC--------CCccCCCCcccHHHHHHHHhhccCce----EEEecCCcccccccccccC
Confidence 58888999999999876 57887766 7777775555442 3348999999999988877
No 53
>1m3w_A H10H24; four-helix bundle, heme binding, maquette, heme binding protein, electron transport, de novo protein; 2.80A {Synthetic} SCOP: k.8.1.1
Probab=31.23 E-value=25 Score=23.05 Aligned_cols=13 Identities=23% Similarity=0.654 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHh
Q psy9259 99 AFELHSKYVYKYC 111 (489)
Q Consensus 99 a~~~h~~y~~ky~ 111 (489)
.|++|+.|+.||-
T Consensus 6 iwklheeflkkfe 18 (32)
T 1m3w_A 6 IWKLHEEFLKKFE 18 (32)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6999999999984
No 54
>4aty_A Terephthalate 1,2-CIS-dihydrodiol dehydrogenase; oxidoreductase; 1.85A {Burkholderia xenovorans LB400}
Probab=27.02 E-value=37 Score=34.29 Aligned_cols=25 Identities=12% Similarity=0.158 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhcCCCcEEEEeecCC
Q psy9259 101 ELHSKYVYKYCNSKKKILFLGMNPG 125 (489)
Q Consensus 101 ~~h~~y~~ky~~~~~rvl~lGmnPG 125 (489)
++...+++||+-..+||.++|.||=
T Consensus 207 ~~~~~~l~~fgi~~PrIaV~GLNPH 231 (349)
T 4aty_A 207 RAAVQALQLMGIAHPVVGLMGINPH 231 (349)
T ss_dssp HHHHHHHHHTC-CCCCEEEECSSGG
T ss_pred HHHHHHHHHhcCCCCceEEEecCCC
Confidence 3445566899888999999999994
No 55
>2eap_A Lymphocyte cytosolic protein 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.79 E-value=7.7 Score=32.21 Aligned_cols=50 Identities=20% Similarity=0.403 Sum_probs=34.8
Q ss_pred CCCccccccCcccC------Chhhhhhhh---cccCCCCCCcccCCCCCcCCCCCCccccchhHHHHHHHHhh
Q psy9259 124 PGPWGMVQCGIPFG------EVKAVKGFL---NIEGKVNQPEKFHKDRPIKGLDCPRSEISGKRLWELASQLS 187 (489)
Q Consensus 124 PGp~Gm~qTGvPFg------d~~~vr~wl---gi~~~v~~p~~ehp~rpv~g~~c~~~evSg~r~w~~~~~~~ 187 (489)
-|..||+..-||+- ++..|.+|| |... +. .-|..++++|+||+.+-..=+
T Consensus 3 ~~~~~m~~~~~ps~seV~~Wsp~~VadWLkk~g~~~-cd-------------~lv~Kh~IDG~~lL~LtE~Dl 61 (90)
T 2eap_A 3 SGSSGMALRNVPFRSEVLGWDPDSLADYFKKLNYKD-CE-------------KAVKKYHIDGARFLNLTENDI 61 (90)
T ss_dssp SCCCCSSTTCCCCHHHHTTCCTTTHHHHHHHTTCHH-HH-------------HHHHHTTCCHHHHHTCCHHHH
T ss_pred CCcccccccccccCccccccCHHHHHHHHHHcCCch-HH-------------HHHHHhccCchhhhcccHHHh
Confidence 47788888888885 344888998 6644 21 125678899988887666555
Done!