RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9259
(489 letters)
>1oe4_A SMUG1, single-strand selective monofunctional uracil DNA
glycosylase; hydrolase, hydrolase/complex, SMUG1; HET:
3DR; 2.0A {Xenopus laevis} SCOP: c.18.1.3 PDB: 1oe5_A*
1oe6_A*
Length = 247
Score = 274 bits (702), Expect = 3e-90
Identities = 118/249 (47%), Positives = 159/249 (63%), Gaps = 5/249 (2%)
Query: 62 DIAEGVLNIEKQLIHELTNSNITYEFPVEYVYNPLDYAFELHSKYVYKYCNSKKKILFLG 121
A+ L +E +L +L SN+ ++ PV+YVYNPL YA+ H YV YC SKK++LFLG
Sbjct: 3 SPADSFLKVELELNLKL--SNLVFQDPVQYVYNPLVYAWAPHENYVQTYCKSKKEVLFLG 60
Query: 122 MNPGPWGMVQCGIPFGEVKAVKGFLNIEGKVNQPEKFHKDRPIKGLDCPRSEISGKRLWE 181
MNPGP+GM Q G+PFGEV V+ +L IEG V++PE H R I+G +CP+SE+SG R W
Sbjct: 61 MNPGPFGMAQTGVPFGEVNHVRDWLQIEGPVSKPEVEHPKRRIRGFECPQSEVSGARFWS 120
Query: 182 LASQLSDGKAADFFKHAYVHNYFPLAFVSKTATNITPAELKNKTTIEKLNSICDKSLSDI 241
L L FFKH +VHN+ PL F++ + N+TP +L K + L ICD++L
Sbjct: 121 LFKSLCGQ-PETFFKHCFVHNHCPLIFMNHSGKNLTPTDLP-KAQRDTLLEICDEALCQA 178
Query: 242 VKHLGIETVIAIGKFAETRAEKALKSNRIFTVKVTSISHPSPRNPASNKNWVENTTKKLK 301
V+ LG++ VI +G+F+E RA KAL + I V V I HPSPRNP +NK W +L
Sbjct: 179 VRVLGVKLVIGVGRFSEQRARKALMAEGID-VTVKGIMHPSPRNPQANKGWEGIVRGQLL 237
Query: 302 DLGVLHYFT 310
+LGVL T
Sbjct: 238 ELGVLSLLT 246
>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA
processing, hydrolase, structural genomics, structural
consortium, SGC; 2.80A {Homo sapiens}
Length = 189
Score = 80.4 bits (199), Expect = 9e-18
Identities = 40/113 (35%), Positives = 51/113 (45%), Gaps = 35/113 (30%)
Query: 338 RGMNEVNATKNATRHAEMVCIDHIVRQYPS-----TYRRVFESITVIVNVEPCIMCMAAL 392
+G NEVN TKNATRHAEMV ID ++ +
Sbjct: 61 KGRNEVNQTKNATRHAEMVAIDQVLDWCRQSGKSPSEV---------------------- 98
Query: 393 LRVFESITVIVNVEPCIMCMAALLSLNIRTIVFACSNDRFG-----YNVLGSD 440
FE + V VEPCIMC AAL + I +V+ C N+RFG N+ +D
Sbjct: 99 ---FEHTVLYVTVEPCIMCAAALRLMKIPLVVYGCQNERFGGCGSVLNIASAD 148
>2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding
region, structural genomics, PSI, protein structure
initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2
Length = 197
Score = 55.6 bits (134), Expect = 4e-09
Identities = 21/113 (18%), Positives = 42/113 (37%), Gaps = 23/113 (20%)
Query: 338 RGMNEVNATKNATRHAEMVCIDHIVRQYPSTYRRVFESITVIVNVEPCIMCMAALLRVFE 397
G N V + + HAE++ + + T+ + + C
Sbjct: 65 AGTNRVVPGRCSAAHAEILALSLAQAKL-DTHDLSADGLP------AC------------ 105
Query: 398 SITVIVNVEPCIMCMAALLSLNIRTIVFACSNDRFGYNVLGSDEKTNYIEIVE 450
++ + EPC+MC A++ +R++V A +D +G DE +
Sbjct: 106 --ELVTSAEPCVMCFGAVIWSGVRSLVCAARSDDVE--AIGFDEGPRPENWMG 154
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily,
substrate specificity, structural plasticity, hydrolase;
1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A
Length = 164
Score = 51.6 bits (124), Expect = 5e-08
Identities = 22/111 (19%), Positives = 38/111 (34%), Gaps = 28/111 (25%)
Query: 338 RGMNEVNATKNATRHAEMVCIDHIVRQYPSTYRRVFESITVIVNVEPCIMCMAALLRVFE 397
G N V + + T HAE+ I + Y+ ++ C
Sbjct: 47 EGQNNVTTSNDPTAHAEVTAIRKACKVL-GAYQ-----------LDDC------------ 82
Query: 398 SITVIVNVEPCIMCMAALLSLNIRTIVFACSNDRFGYNVLGSDEKTNYIEI 448
+ + EPC MC+ A+ + + +A + G D+ Y EI
Sbjct: 83 --ILYTSCEPCPMCLGAIYWARPKAVFYAAEHTDAA--EAGFDDSFIYKEI 129
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex,
RNA stem-loop, hydrol complex; HET: P5P; 2.00A
{Staphylococcus aureus subsp} SCOP: c.97.1.2
Length = 159
Score = 49.0 bits (118), Expect = 3e-07
Identities = 22/108 (20%), Positives = 39/108 (36%), Gaps = 31/108 (28%)
Query: 338 RGMNEVNATKNATRHAEMVCIDHIVRQYPSTYRRVFESITVIVNVEPCIMCMAALLRVFE 397
R N + T HAE + I+ + ++R +E C
Sbjct: 42 RAHNLRETLQQPTAHAEHIAIERAAKVL-GSWR-----------LEGC------------ 77
Query: 398 SITVIVNVEPCIMCMAALLSLNIRTIVFACSNDRFG-----YNVLGSD 440
T+ V +EPC+MC ++ I +V+ + + G N+L
Sbjct: 78 --TLYVTLEPCVMCAGTIVMSRIPRVVYGADDPKGGCSGSLMNLLQQS 123
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A
{Streptococcus pyogenes serotype M6}
Length = 179
Score = 49.1 bits (118), Expect = 4e-07
Identities = 25/108 (23%), Positives = 40/108 (37%), Gaps = 31/108 (28%)
Query: 338 RGMNEVNATKNATRHAEMVCIDHIVRQYPSTYRRVFESITVIVNVEPCIMCMAALLRVFE 397
RG N + A HAEM+ I+ +R +
Sbjct: 51 RGHNAREESNQAIMHAEMMAINEANAHE-GNWR-----------LLDT------------ 86
Query: 398 SITVIVNVEPCIMCMAALLSLNIRTIVFACSNDRFG-----YNVLGSD 440
T+ V +EPC+MC A+ I +++ SN +FG Y +L +
Sbjct: 87 --TLFVTIEPCVMCSGAIGLARIPHVIYGASNQKFGGVDSLYQILTDE 132
>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer,
zinc, metalloenzyme, structural genomics, PSI, protein
structure initiative; 2.03A {Escherichia coli} SCOP:
c.97.1.2 PDB: 3ocq_A
Length = 168
Score = 47.5 bits (114), Expect = 1e-06
Identities = 27/121 (22%), Positives = 43/121 (35%), Gaps = 37/121 (30%)
Query: 338 RGMNEVNATKNATRHAEMVCIDHIVRQ---YPSTYRRVFESITVIVNVEPCIMCMAALLR 394
G N + T HAE++ + RQ YR +
Sbjct: 44 EGWNRPIGRHDPTAHAEIMAL----RQGGLVMQNYR-----------LIDA--------- 79
Query: 395 VFESITVIVNVEPCIMCMAALLSLNIRTIVFACSNDRFG-----YNVLGSDEKTNYIEIV 449
T+ V +EPC+MC A++ I +VF + + G +VL + +EI
Sbjct: 80 -----TLYVTLEPCVMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGMNHRVEIT 134
Query: 450 E 450
E
Sbjct: 135 E 135
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding
protein; 1.60A {Agrobacterium tumefaciens} SCOP:
c.97.1.2
Length = 144
Score = 46.7 bits (112), Expect = 1e-06
Identities = 21/121 (17%), Positives = 34/121 (28%), Gaps = 39/121 (32%)
Query: 338 RGMNEVNATKNATRHAEMVCIDHIVRQ---YPSTYRRVFESITVIVNVEPCIMCMAALLR 394
R N + T HAE+ I R R +
Sbjct: 39 RSGNRTRELNDVTAHAEIAVI----RMACEALGQER-----------LPGA--------- 74
Query: 395 VFESITVIVNVEPCIMCMAALLSLNIRTIVFACSNDRFG-----YNVLGSDEKTN-YIEI 448
+ V +EPC MC AA+ IR + + + + G S + ++
Sbjct: 75 -----DLYVTLEPCTMCAAAISFARIRRLYYGAQDPKGGAVESGVRFF-SQPTCHHAPDV 128
Query: 449 V 449
Sbjct: 129 Y 129
>1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A
{Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A
1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A
Length = 161
Score = 46.8 bits (112), Expect = 2e-06
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 338 RGMNEVNATKNATRHAEMVCIDHIVRQYPSTYRRVFESITVIVNVEPCIMCMAALL 393
RG N +AT H E+ +++ R Y+ T+ + PC MC A++
Sbjct: 51 RGHNMRFQKGSATLHGEISTLENCGRLEGKVYKDT----TLYTTLSPCDMCTGAII 102
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP:
c.97.1.2
Length = 171
Score = 46.8 bits (112), Expect = 2e-06
Identities = 26/111 (23%), Positives = 43/111 (38%), Gaps = 37/111 (33%)
Query: 338 RGMNEVNATKNATRHAEMVCIDHIVRQ---YPSTYRRVFESITVIVNVEPCIMCMAALLR 394
+ N V K+ T HAEM+ I ++ +T +E C
Sbjct: 58 KAHNSVEELKDPTAHAEMLAI----KEACRRLNTKY-----------LEGC--------- 93
Query: 395 VFESITVIVNVEPCIMCMAALLSLNIRTIVFACSNDRFG-----YNVLGSD 440
+ V +EPCIMC AL+ I ++F+ + + G +N+L
Sbjct: 94 -----ELYVTLEPCIMCSYALVLSRIEKVIFSALDKKHGGVVSVFNILDEP 139
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.6 bits (97), Expect = 7e-04
Identities = 49/250 (19%), Positives = 77/250 (30%), Gaps = 88/250 (35%)
Query: 50 STIDDERQNSENDIAEGV----LNIE----KQLIHEL--TNSNITYEFPVE-YVYN---- 94
S ++D +N+E GV L+I +Q+ + TNS++ VE + N
Sbjct: 322 SILEDSLENNE-----GVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKN 376
Query: 95 ------PLD-YAFELHSKYVYKYCNSKKKILFLGMNPGPWGMVQCGIPFGE--VKAVKGF 145
P Y L + K K P G+ Q IPF E +K F
Sbjct: 377 LVVSGPPQSLYGLNLTLR--------KAKA--------PSGLDQSRIPFSERKLKFSNRF 420
Query: 146 LNIEGKVNQPEKFH------------KDRPIKGLDCPRSEI--------SGKRLWELASQ 185
L + P FH KD + +I G L L+
Sbjct: 421 LPV----ASP--FHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGS 474
Query: 186 LSDGKAADFFKHAYVHNYFPLAFVSKTATNIT---PAELKNKTTIEKLNSICDKSLSDIV 242
+S+ + D V + AT+I P + + L
Sbjct: 475 ISE-RIVDCIIRLPVK--WETT-TQFKATHILDFGPGGA---SGLGVL-------THRNK 520
Query: 243 KHLGIETVIA 252
G+ ++A
Sbjct: 521 DGTGVRVIVA 530
Score = 39.6 bits (92), Expect = 0.002
Identities = 39/257 (15%), Positives = 65/257 (25%), Gaps = 93/257 (36%)
Query: 162 RPI---KG-----LDCPRSEISGKRLWELASQLSDGKAADFFKHAYVHNYFPLAFVSKTA 213
RP+ G L P + + +ASQL + F K P A
Sbjct: 7 RPLTLSHGSLEHVLLVPTA------SFFIASQLQE----QFNKI------LPEPTEGFAA 50
Query: 214 TN--ITPAELKNK------TTIEKLNSICDKSLSDIVKHLGIETVIAIGKFAETRAEKAL 265
+ TPAEL K + +E ++ + + +F L
Sbjct: 51 DDEPTTPAELVGKFLGYVSSLVEPSKV---GQFDQVLN-------LCLTEFENC----YL 96
Query: 266 KSNRIFTVKVTSISHPSPRNPASNKNWVENTTKKLKDLGVLHYFTSESQ-NIPNHEHCNH 324
+ N I + + + K ++N Y T+ P +
Sbjct: 97 EGNDIHAL-AAKLLQENDTTLVKTKELIKN------------YITARIMAKRPFDKK--S 141
Query: 325 RTLGFTVDERSKTR--------GMNEVNATKNATRHAEMVCIDHIVRQYPSTYRRVFESI 376
+ F + G + + + Y TY
Sbjct: 142 NSALFRAVGEGNAQLVAIFGGQGNTD-------------DYFEELRDLY-QTYH------ 181
Query: 377 TVIVNVEPCIMCMAALL 393
V V I A L
Sbjct: 182 ---VLVGDLIKFSAETL 195
Score = 37.3 bits (86), Expect = 0.014
Identities = 85/500 (17%), Positives = 151/500 (30%), Gaps = 189/500 (37%)
Query: 78 LTNSNITYEFPVEYVYNPLD---YAFELHSKYVYKYCNSKKKILFLGMNPGPWGMVQCGI 134
L++ ++ + V P A +L + F + P P
Sbjct: 11 LSHGSLEHVLLV-----PTASFFIASQLQEQ-------------FNKILPEP-------- 44
Query: 135 PFGEVKAVKGFLNIEGKVNQPEKFHKDRPIKGLDCPRS--EISGKRLWELASQLSDGKAA 192
E F D D P + E+ GK L ++S + K
Sbjct: 45 --------------------TEGFAAD------DEPTTPAELVGKFLGYVSSLVEPSKVG 78
Query: 193 DF----------FKHAY-----VHNYFPLAFVSKTATNITPAELKNKTTIE---KLNSIC 234
F F++ Y +H A +K +K K I+ +
Sbjct: 79 QFDQVLNLCLTEFENCYLEGNDIH-----ALAAKLLQENDTTLVKTKELIKNYITARIMA 133
Query: 235 DKSL-----SDIVKHL--GIETVIAI----GK----FAETR----AEKALKSNRIFTVKV 275
+ S + + + G ++AI G F E R L + I
Sbjct: 134 KRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAE 193
Query: 276 TSISHPSPRNPASNK---------NWVENTTKKLKD------------LGVL---HYFTS 311
T +S + K W+EN + +GV+ HY +
Sbjct: 194 T-LSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVT 252
Query: 312 ESQNIPNHEHCNHRTLGFTVDE-RSKTRGMNEVNATKNATRHAEMVCIDHIVRQ---YPS 367
+ LGFT E RS +G AT H++ + + + + S
Sbjct: 253 ----------A--KLLGFTPGELRSYLKG---------ATGHSQGLVTAVAIAETDSWES 291
Query: 368 TYRRVFESITVI--VNVE-----PCIMCMAALLRVFESITVIVNVE--PCIMCMAALLSL 418
+ V ++ITV+ + V P ++L +S+ N E P M ++ +L
Sbjct: 292 FFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILE--DSLE---NNEGVPS--PMLSISNL 344
Query: 419 N---IRTIVFACSNDRFGYNVLGSDEKTNYIEI-VENTDDN-----TPKD----DAVIQN 465
++ V N L + ++ +EI + N N P+ + ++
Sbjct: 345 TQEQVQDYVNKT-NSH-----LPAGKQ---VEISLVNGAKNLVVSGPPQSLYGLNLTLRK 395
Query: 466 IKVNSAITNPNTPI--EKPT 483
K S + P K
Sbjct: 396 AKAPSGLDQSRIPFSERKLK 415
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.4 bits (78), Expect = 0.097
Identities = 71/461 (15%), Positives = 132/461 (28%), Gaps = 121/461 (26%)
Query: 20 NTPIEKPTDGIMSIFMSASRSST----GMKR--KST---STIDDE--------------- 55
N +P + + + G+ K+
Sbjct: 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL 189
Query: 56 -RQNSENDIAEGVLNIEKQL---IHELTNSNITYEFPVEYVYNPLDYAFELHSKYVYKYC 111
NS + E + + Q+ ++ + + + + L + Y+ C
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP---YENC 246
Query: 112 -------NSKK---------KILFL-----------GMNPGPWGMVQCGIPFGEVKAVKG 144
+ K KIL + + +
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306
Query: 145 FLNIEGKVNQPEKFHKDRPIKGLDC-PRSEISGKRLWELASQLSDGKA-ADFFKHAYVHN 202
L ++ + D P + L PR +S +A + DG A D +KH N
Sbjct: 307 LLKY---LDCRPQ---DLPREVLTTNPRR-LSI-----IAESIRDGLATWDNWKHV---N 351
Query: 203 YFPLA-FVSKTATNITPAELKNKTTIEKLNSICDKSLSDI-VKHLGI----ETVIAIGKF 256
L + + + PAE + ++L S+ S + I L + +
Sbjct: 352 CDKLTTIIESSLNVLEPAEYRKM--FDRL-SVFPPS-AHIPTILLSLIWFDVIKSDVMVV 407
Query: 257 AETRAEKAL--KSNRIFTVKVTSI----SHPSPRNPASNKNWVE--NTTKKLK--DLGVL 306
+ +L K + T+ + SI A +++ V+ N K DL
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP 467
Query: 307 H---YFTSESQNIPNH----EHCNHRTLGFT---VDER---SKTRGMNEVNATKNATRHA 353
+ YF S +I +H EH R F +D R K R + NA+
Sbjct: 468 YLDQYFYS---HIGHHLKNIEH-PERMTLFRMVFLDFRFLEQKIR---HDSTAWNASGSI 520
Query: 354 EMVCID------HIVRQYPSTYRRVFESITVIVNVEPCIMC 388
+I P R V + + +E ++C
Sbjct: 521 LNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLIC 561
Score = 31.4 bits (70), Expect = 0.78
Identities = 31/236 (13%), Positives = 62/236 (26%), Gaps = 94/236 (39%)
Query: 62 DIAEGVLNI---------EKQLIHELTNSNITYEFPVEYVYN----------PLDYAFEL 102
I +L++ ++++L ++ + P E + L+ + L
Sbjct: 386 HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL 445
Query: 103 HSKYVYKYCNSKKKILFLGMNPGPWGMVQCGIPFGEVKAVKGFLNIEGKVNQPEKFHKDR 162
H V Y N P+ F D
Sbjct: 446 HRSIVDHY------------------------------------------NIPKTFDSD- 462
Query: 163 PIKGLDCPRSEISGKRLWELA---SQLSDGKAADFFKHAYVHNYFPLAFV------SKTA 213
D + + + + F+ + F+ TA
Sbjct: 463 -----DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV----FLDFRFLEQKIRHDSTA 513
Query: 214 TNITPAELKNKTTIEKLNS----ICDKS------LSDIVKHL-GIETVIAIGKFAE 258
N + N T+++L ICD ++ I+ L IE + K+ +
Sbjct: 514 WN-ASGSILN--TLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTD 566
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 1.8
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 9/29 (31%)
Query: 71 EKQLIHELTNSNITYEFPVEYVYNPLDYA 99
EKQ + +L S ++ +Y D A
Sbjct: 18 EKQALKKLQAS-------LK-LYAD-DSA 37
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein
binding; 2.40A {Homo sapiens}
Length = 145
Score = 28.3 bits (64), Expect = 3.4
Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 227 IEKLNSICDKSLSDIVKHLGIETVIAIGKFAETRAEKALKS 267
+E+L +C+ +L +L +E I A+ + LK+
Sbjct: 108 LERLKVMCEDALC---SNLSVENAAEILILADLHSADQLKT 145
>2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION
binding, hydrolase; 2.50A {Homo sapiens} PDB: 2rpz_A
Length = 190
Score = 28.3 bits (63), Expect = 4.0
Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 11/95 (11%)
Query: 307 HYFTSESQNIPNHEHCNHRTLGFTVDERSKTRGMNE---VNATKNATRHAEMVCIDHIVR 363
++F + +N+ N L + V+ + K + ++A HAE + I+
Sbjct: 16 NFFKFQFRNVEYSSGRNKTFLCYVVEAQGKGGQVQASRGYLEDEHAAAHAEEAFFNTILP 75
Query: 364 QY-PSTYRRVFESITVIVNVEPCIMC---MAALLR 394
+ P+ V T V+ PC C + L
Sbjct: 76 AFDPALRYNV----TWYVSSSPCAACADRIIKTLS 106
>1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN;
2.20A {Enterobacteria phage T4} SCOP: c.97.1.2
Length = 193
Score = 28.0 bits (62), Expect = 6.1
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 400 TVIVNVEPCIMCMAALLSLNIRTIVF 425
T+ V + PC C A+ I+ +V+
Sbjct: 124 TMYVTLSPCPDCAKAIAQSGIKKLVY 149
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.132 0.386
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,213,532
Number of extensions: 428161
Number of successful extensions: 850
Number of sequences better than 10.0: 1
Number of HSP's gapped: 831
Number of HSP's successfully gapped: 30
Length of query: 489
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 392
Effective length of database: 3,993,456
Effective search space: 1565434752
Effective search space used: 1565434752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.4 bits)