RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9259
(489 letters)
>d1oe4a_ c.18.1.3 (A:) Single-strand selective monofunctional
uracil-DNA glycosylase SMUG1 {African clawed frog
(Xenopus laevis) [TaxId: 8355]}
Length = 245
Score = 290 bits (744), Expect = 6e-97
Identities = 118/248 (47%), Positives = 160/248 (64%), Gaps = 5/248 (2%)
Query: 63 IAEGVLNIEKQLIHELTNSNITYEFPVEYVYNPLDYAFELHSKYVYKYCNSKKKILFLGM 122
A+ L +E +L +L SN+ ++ PV+YVYNPL YA+ H YV YC SKK++LFLGM
Sbjct: 3 PADSFLKVELELNLKL--SNLVFQDPVQYVYNPLVYAWAPHENYVQTYCKSKKEVLFLGM 60
Query: 123 NPGPWGMVQCGIPFGEVKAVKGFLNIEGKVNQPEKFHKDRPIKGLDCPRSEISGKRLWEL 182
NPGP+GM Q G+PFGEV V+ +L IEG V++PE H R I+G +CP+SE+SG R W L
Sbjct: 61 NPGPFGMAQTGVPFGEVNHVRDWLQIEGPVSKPEVEHPKRRIRGFECPQSEVSGARFWSL 120
Query: 183 ASQLSDGKAADFFKHAYVHNYFPLAFVSKTATNITPAELKNKTTIEKLNSICDKSLSDIV 242
L G+ FFKH +VHN+ PL F++ + N+TP +L K + L ICD++L V
Sbjct: 121 FKSLC-GQPETFFKHCFVHNHCPLIFMNHSGKNLTPTDLP-KAQRDTLLEICDEALCQAV 178
Query: 243 KHLGIETVIAIGKFAETRAEKALKSNRIFTVKVTSISHPSPRNPASNKNWVENTTKKLKD 302
+ LG++ VI +G+F+E RA KAL + V V I HPSPRNP +NK W +L +
Sbjct: 179 RVLGVKLVIGVGRFSEQRARKALMAEG-IDVTVKGIMHPSPRNPQANKGWEGIVRGQLLE 237
Query: 303 LGVLHYFT 310
LGVL T
Sbjct: 238 LGVLSLLT 245
>d2g84a1 c.97.1.2 (A:1-189) Putative deaminase NE0047 {Nitrosomonas
europaea [TaxId: 915]}
Length = 189
Score = 42.4 bits (99), Expect = 4e-05
Identities = 19/121 (15%), Positives = 40/121 (33%), Gaps = 23/121 (19%)
Query: 338 RGMNEVNATKNATRHAEMVCIDHIVRQYPSTYRRVFESITVIVNVEPCIMCMAALLRVFE 397
G N V + + HAE++ + + +
Sbjct: 63 AGTNRVVPGRCSAAHAEILALSLAQAK---------------------LDTHDLSADGLP 101
Query: 398 SITVIVNVEPCIMCMAALLSLNIRTIVFACSNDRFGYNVLGSDEKTNYIEIVENTDDNTP 457
+ ++ + EPC+MC A++ +R++V A +D +G DE + +
Sbjct: 102 ACELVTSAEPCVMCFGAVIWSGVRSLVCAARSDDVE--AIGFDEGPRPENWMGGLEARGI 159
Query: 458 K 458
Sbjct: 160 T 160
>d1wkqa_ c.97.1.2 (A:) Guanine deaminase GuaD {Bacillus subtilis
[TaxId: 1423]}
Length = 158
Score = 38.3 bits (88), Expect = 6e-04
Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 396 FESITVIVNVEPCIMCMAALLSLNIRTIVFACSNDRFGYNVLGSDEKTNYIEI 448
+ + + EPC MC+ A+ + + +A + G D+ Y EI
Sbjct: 73 LDDCILYTSCEPCPMCLGAIYWARPKAVFYAAEHTDAA--EAGFDDSFIYKEI 123
>d1muga_ c.18.1.2 (A:) G:T/U mismatch-specific DNA glycosylase, Mug
{Escherichia coli [TaxId: 562]}
Length = 165
Score = 31.6 bits (71), Expect = 0.11
Identities = 27/181 (14%), Positives = 54/181 (29%), Gaps = 39/181 (21%)
Query: 116 KILFLGMNPGPWGMVQCGIPFGEVKAVKGFLNIEGKVNQPEKFHKDRPIKGLDCPRSEIS 175
+++F G+NPG G PF F + + ++ K
Sbjct: 11 RVVFCGINPGLSSAGT-GFPF--AHPANRFWKVIYQAGFTDRQLKP-------------- 53
Query: 176 GKRLWELASQLSDGKAADFFKHAYVHNYFPLAFVSKTATNITPAELKNKT--TIEKLNSI 233
V + A ++ EL IEK+
Sbjct: 54 ------------QEAQHLLDYRCGVTKLVDRP--TVQANEVSKQELHAGGRKLIEKIEDY 99
Query: 234 CDKSLSDIVKHLGIETVIAIGKFAETRAEKALKSNRIFTVKVTSISHPSPRNPASNKNWV 293
+ + LG + F++ A+ ++ I + ++ + +PS + S + V
Sbjct: 100 QPQ----ALAILGKQAYEQG--FSQRGAQWGKQTLTIGSTQIWVLPNPSGLSRVSLEKLV 153
Query: 294 E 294
E
Sbjct: 154 E 154
>d1vq2a_ c.97.1.2 (A:) Deoxycytidylate deaminase {Bacteriophage T4
[TaxId: 10665]}
Length = 193
Score = 29.5 bits (65), Expect = 0.62
Identities = 18/120 (15%), Positives = 31/120 (25%), Gaps = 28/120 (23%)
Query: 312 ESQNIPNHEHCNHRTLGFTVDERSKTRGMNEVNATKNATRHAEMVCIDHIVRQYPSTYRR 371
+ I H+ +K + HAE+ I S
Sbjct: 64 KHAIIQGHKPECVSFGSTDRFVLAKEHRSAHSEWSSKNEIHAELNAILFAAENGSS---- 119
Query: 372 VFESITVIVNVEPCIMCMAALLRVFESITVIVNVEPCIMCMAALLSLNIRTIVFACSNDR 431
E T+ V + PC C A+ I+ +V+ + D+
Sbjct: 120 ------------------------IEGATMYVTLSPCPDCAKAIAQSGIKKLVYCETYDK 155
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein
MetN {Escherichia coli [TaxId: 562]}
Length = 240
Score = 29.1 bits (65), Expect = 1.1
Identities = 14/108 (12%), Positives = 31/108 (28%), Gaps = 11/108 (10%)
Query: 323 NHRTLGFTVDERSKTRGMNEVNATKNATRHAEMVCIDHIVRQYPSTY-----RRVFESIT 377
+ RT+ V + + + T +V + YPS +RV +I
Sbjct: 95 SSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRV--AIA 152
Query: 378 VIVNVEPCIMCMAALLRVFESITVIVNVEPCIMCMAALLSLNIRTIVF 425
+ P ++ + + + + TI+
Sbjct: 153 RALASNPKVLLCDEATSALDPA----TTRSILELLKDINRRLGLTILL 196
>d2a8na1 c.97.1.2 (A:2-131) Cytidine and deoxycytidylate deaminase
CodA {Agrobacterium tumefaciens [TaxId: 358]}
Length = 130
Score = 27.9 bits (61), Expect = 1.5
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 396 FESITVIVNVEPCIMCMAALLSLNIRTIVFACSNDRFGYNVLGS 439
+ V +EPC MC AA+ IR + + + + G + S
Sbjct: 70 LPGADLYVTLEPCTMCAAAISFARIRRLYYGAQDPKGG--AVES 111
>d1p6oa_ c.97.1.2 (A:) Cytosine deaminase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 156
Score = 27.9 bits (61), Expect = 1.8
Identities = 10/54 (18%), Positives = 20/54 (37%)
Query: 380 VNVEPCIMCMAALLRVFESITVIVNVEPCIMCMAALLSLNIRTIVFACSNDRFG 433
+ C +V++ T+ + PC MC A++ I V + +
Sbjct: 61 GEISTLENCGRLEGKVYKDTTLYTTLSPCDMCTGAIIMYGIPRCVVGENVNFKS 114
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 28.0 bits (62), Expect = 2.2
Identities = 12/78 (15%), Positives = 31/78 (39%), Gaps = 7/78 (8%)
Query: 318 NHEHCNHRTLGFTVDERSKTRGMNEVNATKNATRHAEMVCIDHIVRQYPSTY-----RRV 372
++ H ++ + K G + + + AE++ + H++ + P +RV
Sbjct: 80 SYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRV 139
Query: 373 FESITVIVNVEPCIMCMA 390
+I + EP + +
Sbjct: 140 --AIGRTLVAEPSVFLLD 155
>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 293
Score = 27.3 bits (60), Expect = 4.0
Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 2/60 (3%)
Query: 226 TIEKLNSICDKSLSDIVKHLGIETVIAIGKFAETRAEKALKSNRIFTVKVTSISHPSPRN 285
+EKL SI S+ D K I G + + + ++ ++ +
Sbjct: 5 ILEKLRSIV--SVGDPKKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKE 62
>d1vh9a_ d.38.1.5 (A:) Hypothetical protein YbdB {Escherichia coli
[TaxId: 562]}
Length = 138
Score = 26.4 bits (58), Expect = 4.9
Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Query: 222 KNKTTIEKLNSICDKSLSDIVKHLGIE 248
K T+++LN+ D ++ V HLGI
Sbjct: 5 KRHLTLDELNATSDNTM---VAHLGIV 28
>d1wwra1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {Aquifex
aeolicus [TaxId: 63363]}
Length = 151
Score = 26.7 bits (58), Expect = 4.9
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 396 FESITVIVNVEPCIMCMAALLSLNIRTIVFACSNDRFG-----YNVLGSDEKTNYIEIV 449
E + V +EPCIMC AL+ I ++F+ + + G +N+L + ++
Sbjct: 70 LEGCELYVTLEPCIMCSYALVLSRIEKVIFSALDKKHGGVVSVFNILDEPTLNHRVKWE 128
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.132 0.386
Gapped
Lambda K H
0.267 0.0606 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,770,622
Number of extensions: 82613
Number of successful extensions: 194
Number of sequences better than 10.0: 1
Number of HSP's gapped: 190
Number of HSP's successfully gapped: 16
Length of query: 489
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 400
Effective length of database: 1,185,626
Effective search space: 474250400
Effective search space used: 474250400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.2 bits)