BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9260
(217 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6P2Q9|PRP8_HUMAN Pre-mRNA-processing-splicing factor 8 OS=Homo sapiens GN=PRPF8 PE=1
SV=2
Length = 2335
Score = 305 bits (782), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 154/209 (73%), Positives = 162/209 (77%), Gaps = 41/209 (19%)
Query: 29 EKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMH 88
EKASGFEESMK+KKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMH
Sbjct: 1504 EKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMH 1563
Query: 89 GKIPTLKISLIQIFRAHLWQKVHESIVMDLCQ------------------------HSIN 124
GKIPTLKISLIQIFRAHLWQK+HESIVMDLCQ + +N
Sbjct: 1564 GKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHPRKSYKMN 1623
Query: 125 FS-----------------PLMFISRDTMDSTTTQKYWLDVQLRWGDYDSHDIERYARAK 167
S L+ S+D MDSTTTQKYW+D+QLRWGDYDSHDIERYARAK
Sbjct: 1624 SSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIERYARAK 1683
Query: 168 FLDYTTDNMSIYPSPTGVLIAIDLAYNLH 196
FLDYTTDNMSIYPSPTGVLIAIDLAYNLH
Sbjct: 1684 FLDYTTDNMSIYPSPTGVLIAIDLAYNLH 1712
>sp|Q99PV0|PRP8_MOUSE Pre-mRNA-processing-splicing factor 8 OS=Mus musculus GN=Prpf8 PE=1
SV=2
Length = 2335
Score = 305 bits (782), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 154/209 (73%), Positives = 162/209 (77%), Gaps = 41/209 (19%)
Query: 29 EKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMH 88
EKASGFEESMK+KKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMH
Sbjct: 1504 EKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMH 1563
Query: 89 GKIPTLKISLIQIFRAHLWQKVHESIVMDLCQ------------------------HSIN 124
GKIPTLKISLIQIFRAHLWQK+HESIVMDLCQ + +N
Sbjct: 1564 GKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHPRKSYKMN 1623
Query: 125 FS-----------------PLMFISRDTMDSTTTQKYWLDVQLRWGDYDSHDIERYARAK 167
S L+ S+D MDSTTTQKYW+D+QLRWGDYDSHDIERYARAK
Sbjct: 1624 SSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIERYARAK 1683
Query: 168 FLDYTTDNMSIYPSPTGVLIAIDLAYNLH 196
FLDYTTDNMSIYPSPTGVLIAIDLAYNLH
Sbjct: 1684 FLDYTTDNMSIYPSPTGVLIAIDLAYNLH 1712
>sp|P34369|PRP8_CAEEL Pre-mRNA-splicing factor 8 homolog OS=Caenorhabditis elegans GN=prp-8
PE=1 SV=1
Length = 2329
Score = 303 bits (776), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 152/209 (72%), Positives = 162/209 (77%), Gaps = 41/209 (19%)
Query: 29 EKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMH 88
E+ASGFEESMK+KKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMH
Sbjct: 1497 ERASGFEESMKFKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMH 1556
Query: 89 GKIPTLKISLIQIFRAHLWQKVHESIVMDLCQ------------------------HSIN 124
GKIPTLKISLIQIFRAHLWQK+HES+VMDLCQ + +N
Sbjct: 1557 GKIPTLKISLIQIFRAHLWQKIHESVVMDLCQVFDQELDALEIQTVQKETIHPRKSYKMN 1616
Query: 125 FS-----------------PLMFISRDTMDSTTTQKYWLDVQLRWGDYDSHDIERYARAK 167
S LM S+D MD+TTTQKYWLDVQLRWGDYDSHD+ERYARAK
Sbjct: 1617 SSCADVLLFAQYKWNVSRPSLMADSKDVMDNTTTQKYWLDVQLRWGDYDSHDVERYARAK 1676
Query: 168 FLDYTTDNMSIYPSPTGVLIAIDLAYNLH 196
FLDYTTDNMSIYPSPTGVLIAIDLAYNL+
Sbjct: 1677 FLDYTTDNMSIYPSPTGVLIAIDLAYNLY 1705
>sp|Q8T295|PRP8_DICDI Pre-mRNA-processing-splicing factor 8 homolog OS=Dictyostelium
discoideum GN=prpf8 PE=3 SV=1
Length = 2327
Score = 281 bits (719), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 142/209 (67%), Positives = 158/209 (75%), Gaps = 42/209 (20%)
Query: 29 EKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMH 88
EKASGFEESMKYKKLT+AQRSGLNQIPNRRFTLWWSPTINR NVYVGFQVQLDLTGIFMH
Sbjct: 1493 EKASGFEESMKYKKLTHAQRSGLNQIPNRRFTLWWSPTINRKNVYVGFQVQLDLTGIFMH 1552
Query: 89 GKIPTLKISLIQIFRAHLWQKVHESIVMDLCQ------------------------HSIN 124
GKIPTLKISLIQIFRAHLWQK+HES+VMDLCQ + +N
Sbjct: 1553 GKIPTLKISLIQIFRAHLWQKIHESLVMDLCQVFDQELDNLEISVVNKEAIHPRKSYKMN 1612
Query: 125 FS-----------------PLMFISRDTMDSTTTQKYWLDVQLRWGDYDSHDIERYARAK 167
S L+ +RDT D+TTTQ YWLDVQL+WGD+DSHDIERY+RAK
Sbjct: 1613 SSCADILLRATHKWQVSRPSLLNDNRDTYDNTTTQ-YWLDVQLKWGDFDSHDIERYSRAK 1671
Query: 168 FLDYTTDNMSIYPSPTGVLIAIDLAYNLH 196
FLDYTTD+MS+YPSPTG LI +DLAYN++
Sbjct: 1672 FLDYTTDSMSLYPSPTGCLIGLDLAYNIY 1700
>sp|O14187|SPP42_SCHPO Pre-mRNA-splicing factor spp42 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=spp42 PE=1 SV=1
Length = 2363
Score = 279 bits (713), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 143/230 (62%), Positives = 162/230 (70%), Gaps = 48/230 (20%)
Query: 29 EKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMH 88
EKASGFEESMK+KKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGI MH
Sbjct: 1528 EKASGFEESMKFKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIMMH 1587
Query: 89 GKIPTLKISLIQIFRAHLWQKVHESIVMDLCQ------------------------HSIN 124
GKIPTLKISLIQIFR+HLWQK+HES+V DLCQ + +N
Sbjct: 1588 GKIPTLKISLIQIFRSHLWQKIHESVVWDLCQVLDQELESLQIETVQKETIHPRKSYKMN 1647
Query: 125 FS-----------------PLMFISRDTMDSTTTQKYWLDVQLRWGDYDSHDIERYARAK 167
S L+ +RD +D+TTT KYW+DVQLR+GDYDSHDIERY RAK
Sbjct: 1648 SSCADILLLAAYKWNVSRPSLLNDNRDVLDNTTTNKYWIDVQLRFGDYDSHDIERYTRAK 1707
Query: 168 FLDYTTDNMSIYPSPTGVLIAIDLAYNLHRYIDYPVSAMMNCVGVLKSVV 217
FLDY+TD S+YPSPTGVLI IDL YN+H SA N + +K ++
Sbjct: 1708 FLDYSTDAQSMYPSPTGVLIGIDLCYNMH-------SAYGNWIPGMKPLI 1750
>sp|P33334|PRP8_YEAST Pre-mRNA-splicing factor 8 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=PRP8 PE=1 SV=1
Length = 2413
Score = 260 bits (664), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 129/209 (61%), Positives = 149/209 (71%), Gaps = 41/209 (19%)
Query: 29 EKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMH 88
EKASGFE+SM++KKLT+AQR+GL+QIPNRRFTLWWSPTINRANVYVGF VQLDLTGIF+H
Sbjct: 1576 EKASGFEDSMQFKKLTHAQRTGLSQIPNRRFTLWWSPTINRANVYVGFLVQLDLTGIFLH 1635
Query: 89 GKIPTLKISLIQIFRAHLWQKVHESIVMDLCQ------------------------HSIN 124
GKIPTLKISLIQIFRAHLWQK+HESIV D+CQ + +N
Sbjct: 1636 GKIPTLKISLIQIFRAHLWQKIHESIVFDICQILDGELDVLQIESVTKETVHPRKSYKMN 1695
Query: 125 FSP-----------------LMFISRDTMDSTTTQKYWLDVQLRWGDYDSHDIERYARAK 167
S L+ + D+ T K W DVQLR+GDYDSHDI RY RAK
Sbjct: 1696 SSAADITMESVHEWEVSKPSLLHETNDSFKGLITNKMWFDVQLRYGDYDSHDISRYVRAK 1755
Query: 168 FLDYTTDNMSIYPSPTGVLIAIDLAYNLH 196
FLDYTTDN+S+YPSPTGV+I IDLAYN++
Sbjct: 1756 FLDYTTDNVSMYPSPTGVMIGIDLAYNMY 1784
>sp|Q3ZBF8|CERS2_BOVIN Ceramide synthase 2 OS=Bos taurus GN=CERS2 PE=2 SV=1
Length = 380
Score = 32.0 bits (71), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 9/68 (13%)
Query: 142 QKYWLDVQLRWGDYDSHDIERYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHRYIDY 201
++ WL V L W D + D YA+A L T P +L I + Y Y+
Sbjct: 12 ERLWLPVNLTWADLEDRDGRVYAKASDLYITL--------PLALLFLI-IRYFFELYVAT 62
Query: 202 PVSAMMNC 209
P++A++N
Sbjct: 63 PLAALLNV 70
>sp|Q96G23|CERS2_HUMAN Ceramide synthase 2 OS=Homo sapiens GN=CERS2 PE=1 SV=1
Length = 380
Score = 31.2 bits (69), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
Query: 142 QKYWLDVQLRWGDYDSHDIERYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHRYIDY 201
++ WL V L W D + D YA+A L T P +L I + Y Y+
Sbjct: 12 ERLWLPVNLTWADLEDRDGRVYAKASDLYITL--------PLALLFLI-VRYFFELYVAT 62
Query: 202 PVSAMMN 208
P++A++N
Sbjct: 63 PLAALLN 69
>sp|Q924Z4|CERS2_MOUSE Ceramide synthase 2 OS=Mus musculus GN=Cers2 PE=1 SV=1
Length = 380
Score = 30.8 bits (68), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 9/68 (13%)
Query: 142 QKYWLDVQLRWGDYDSHDIERYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHRYIDY 201
++ WL V L W D + D YA+A +Y + L+ + + Y Y+
Sbjct: 12 ERLWLPVNLTWADLEDKDGRVYAKAS---------DLYITLPLALLFLVIRYFFELYVAT 62
Query: 202 PVSAMMNC 209
P++A++N
Sbjct: 63 PLAALLNV 70
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.135 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,028,781
Number of Sequences: 539616
Number of extensions: 2790166
Number of successful extensions: 6762
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 6749
Number of HSP's gapped (non-prelim): 18
length of query: 217
length of database: 191,569,459
effective HSP length: 113
effective length of query: 104
effective length of database: 130,592,851
effective search space: 13581656504
effective search space used: 13581656504
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 59 (27.3 bits)