Query psy9260
Match_columns 217
No_of_seqs 71 out of 73
Neff 2.4
Searched_HMMs 29240
Date Fri Aug 16 22:55:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9260.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9260hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3c25_A NOTI restriction endonu 41.3 24 0.00081 32.7 4.1 52 71-122 176-246 (383)
2 3h43_A Proteasome-activating n 19.7 47 0.0016 24.0 1.7 42 54-95 38-79 (85)
3 3hsh_A Endostatin, collagen al 18.6 47 0.0016 23.1 1.4 18 10-27 30-47 (56)
4 3n3f_A Collagen alpha-1(XV) ch 18.2 49 0.0017 22.7 1.4 17 10-26 28-44 (54)
5 2e2d_C TIMP-2, metalloproteina 16.8 35 0.0012 27.9 0.5 17 38-54 105-121 (180)
6 2x5c_A Hypothetical protein OR 14.8 34 0.0012 27.1 -0.0 11 83-93 47-57 (131)
7 2ohw_A YUEI protein; structura 12.6 99 0.0034 24.1 2.0 43 153-195 71-116 (133)
8 3v96_A Metalloproteinase inhib 12.5 38 0.0013 27.7 -0.4 18 38-55 103-120 (184)
9 3cki_B Metalloproteinase inhib 12.4 33 0.0011 25.6 -0.8 19 37-55 98-116 (121)
10 3s9z_A Malate synthase G; inhi 11.8 41 0.0014 33.6 -0.5 25 93-122 636-665 (741)
No 1
>3c25_A NOTI restriction endonuclease; protein-DNA complex; HET: DNA; 2.50A {Nocardia otitidiscaviarum} PDB: 3bvq_A*
Probab=41.33 E-value=24 Score=32.67 Aligned_cols=52 Identities=21% Similarity=0.323 Sum_probs=36.1
Q ss_pred eeeeeeeee-ecccc----------------cccccCCchhh--HHHHHHhhhhhHHHHHHHHHHHHHHHH
Q psy9260 71 NVYVGFQVQ-LDLTG----------------IFMHGKIPTLK--ISLIQIFRAHLWQKVHESIVMDLCQHS 122 (217)
Q Consensus 71 nVyVGfqvQ-lDlTG----------------IfMhGKipTLK--iSlIqIFR~hLWqkIHesiV~dlcqvl 122 (217)
.=|||.++| ||.|| |-.||-|||=- -.+.+=--+-=|...|..+.-+++-++
T Consensus 176 keFVgIEVQTIDtTGnYr~a~~~~~~al~e~~~f~g~~p~p~~r~~~~k~~~g~n~~nv~kr~~~q~~yk~ 246 (383)
T 3c25_A 176 KRYGVLEIQTMDFHGSYKHAVGAIDIALVEGIDFHGWLPTPAGRAALSKKMEGPNLSNVFKRTFYQMAYKF 246 (383)
T ss_dssp EEEEEEEECCCCBSSCSHHHHHHHHHHHHTCSCSTTTTTSHHHHHHTTTTCCCBCHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEEEEEecccchhhhhhhhhhhhhccccccCcCCCcchhhhhhhhccCCCHHHHHHHHHHHHHHHh
Confidence 349999999 78775 66788888632 112222234459999999999888777
No 2
>3h43_A Proteasome-activating nucleotidase; regulatory particle, nucleosidase, ATP-binding, cytoplasm, nucleotide-binding, hydrolase; 2.10A {Methanocaldococcus jannaschii}
Probab=19.67 E-value=47 Score=23.99 Aligned_cols=42 Identities=19% Similarity=0.215 Sum_probs=36.6
Q ss_pred CCCCceeeeeccccccceeeeeeeeeecccccccccCCchhh
Q psy9260 54 IPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLK 95 (217)
Q Consensus 54 IPNRRFtLWWSPTINRanVyVGfqvQlDlTGIfMhGKipTLK 95 (217)
-++++|.+==+|+|++...--|=+|-|+-+.--.++.+|.|.
T Consensus 38 s~g~~~~V~v~~~Vd~~~LkpG~rVaLn~~s~~Iv~vLp~~~ 79 (85)
T 3h43_A 38 STGPSFLVNVSHFVNPDDLAPGKRVCLNQQTLTVVDVLPELE 79 (85)
T ss_dssp TTSSEEEEEBCTTSCGGGCCTTCEEEECTTTCCEEEECC---
T ss_pred CCCCeEEEEecCccCHHHCCCCCEEEECCcccCHhhhhhhhh
Confidence 467899999999999999999999999999999999999874
No 3
>3hsh_A Endostatin, collagen alpha-1(XVIII) chain; extracellular matrix, basement membrane, collagen trimerization domain, folding, association; 1.80A {Homo sapiens} PDB: 3hon_A
Probab=18.62 E-value=47 Score=23.05 Aligned_cols=18 Identities=17% Similarity=0.301 Sum_probs=15.1
Q ss_pred cccceeEEeeecccccce
Q psy9260 10 VEESQIYLFVHLLKSRLK 27 (217)
Q Consensus 10 ~~~~~~~~~~~~~weglf 27 (217)
.|+.+||+|+...|..+-
T Consensus 30 ~d~~eLyiRVr~Gwr~v~ 47 (56)
T 3hsh_A 30 AEQEELYVRVQNGFRKVQ 47 (56)
T ss_dssp TTTTEEEEEETTEEEEEC
T ss_pred EecceEEEEEcCceeeee
Confidence 478899999999998764
No 4
>3n3f_A Collagen alpha-1(XV) chain; extracellular matrix, basement membrane, collagen trimerization domain, folding, association, chain selection helix; 2.00A {Homo sapiens}
Probab=18.22 E-value=49 Score=22.71 Aligned_cols=17 Identities=12% Similarity=0.173 Sum_probs=14.5
Q ss_pred cccceeEEeeecccccc
Q psy9260 10 VEESQIYLFVHLLKSRL 26 (217)
Q Consensus 10 ~~~~~~~~~~~~~wegl 26 (217)
.|+.+||+|+..+|..+
T Consensus 28 ~d~~eLyiRVr~Gwr~v 44 (54)
T 3n3f_A 28 RDSTEFFIRVRDGWKKL 44 (54)
T ss_dssp TTTTEEEEEETTEEEEC
T ss_pred EecceEEEEEcCceeee
Confidence 47789999999998765
No 5
>2e2d_C TIMP-2, metalloproteinase inhibitor 2; matrix metalloproteinase/MMP, collagenase, tissue inhibitor of metalloproteinases/TIMP, complex, flexibility; 2.00A {Bos taurus} SCOP: b.40.3.1 PDB: 1bqq_T 1buv_T 1br9_A 1gxd_C 2tmp_A
Probab=16.83 E-value=35 Score=27.91 Aligned_cols=17 Identities=24% Similarity=0.472 Sum_probs=14.7
Q ss_pred hhhhhhhhhhhhcCCCC
Q psy9260 38 MKYKKLTNAQRSGLNQI 54 (217)
Q Consensus 38 ~k~kkLTnAQRsGLsQI 54 (217)
+...+||.+||.||++.
T Consensus 105 ~pW~~ls~~Qr~gl~~~ 121 (180)
T 2e2d_C 105 VPWDTLSATQKKSLNHR 121 (180)
T ss_dssp EEGGGSCHHHHHHTTTH
T ss_pred EEhHHCCHHHHhhhHhh
Confidence 57789999999999874
No 6
>2x5c_A Hypothetical protein ORF131; viral protein; HET: GOL; 1.80A {Pyrobaculum spherical virus}
Probab=14.84 E-value=34 Score=27.15 Aligned_cols=11 Identities=55% Similarity=1.081 Sum_probs=9.5
Q ss_pred cccccccCCch
Q psy9260 83 TGIFMHGKIPT 93 (217)
Q Consensus 83 TGIfMhGKipT 93 (217)
.|+|||.|-|.
T Consensus 47 lgvfmhakcpr 57 (131)
T 2x5c_A 47 LGVFMHAKCPR 57 (131)
T ss_dssp HTCCCEEECTT
T ss_pred chheeeccCCC
Confidence 58999999885
No 7
>2ohw_A YUEI protein; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; 1.40A {Bacillus subtilis} SCOP: d.79.8.1
Probab=12.56 E-value=99 Score=24.13 Aligned_cols=43 Identities=23% Similarity=0.369 Sum_probs=31.5
Q ss_pred CCCCCchhhHH---HHhhhhcccCCCcccCCCCceeEEEeeehhhc
Q psy9260 153 GDYDSHDIERY---ARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNL 195 (217)
Q Consensus 153 GdyDShdIerY---~R~kfldYTtD~~SiYPSptG~ii~iDLaYN~ 195 (217)
|+.|...+..| |++.=+.||-=+-...|+|.|+||+-|=|.|.
T Consensus 71 g~l~~~~~~~YiklA~~~~i~fTiV~~~~~~~~~glVv~s~~Avn~ 116 (133)
T 2ohw_A 71 GELQYQSYSSYIQMASRYGVPFKIVSDLQFHTPLGIVIAADIAVNR 116 (133)
T ss_dssp TTSCHHHHHHHHHHHHHTTCCEEEECCCSSCCSEEEEEEESSCCCC
T ss_pred CCCCHHHHHHHHHHHHHcCCCeEEecCCCCCCCeEEEEEcCccccC
Confidence 66666666666 44555667665557789999999999988775
No 8
>3v96_A Metalloproteinase inhibitor 1; metzincin, OB-fold, metalloproteinase, protease inhibitor, H inhibitor-hydrolase complex; 1.90A {Homo sapiens} PDB: 1uea_B 1d2b_A 1oo9_B 2j0t_D 3ma2_B
Probab=12.51 E-value=38 Score=27.68 Aligned_cols=18 Identities=28% Similarity=0.421 Sum_probs=15.4
Q ss_pred hhhhhhhhhhhhcCCCCC
Q psy9260 38 MKYKKLTNAQRSGLNQIP 55 (217)
Q Consensus 38 ~k~kkLTnAQRsGLsQIP 55 (217)
+....||.+||-||++.-
T Consensus 103 ~pW~~lt~~Qrkgl~~~Y 120 (184)
T 3v96_A 103 APWNSLSLAQRRGFTKTY 120 (184)
T ss_dssp EEGGGSCHHHHHHHHTTG
T ss_pred eEhHHCCHHHHhhhHHHH
Confidence 578899999999998753
No 9
>3cki_B Metalloproteinase inhibitor 3; extra-cellular matrix, catalytic zinc, SA-SB loop, alternative splicing, cleavage on PAIR of basic residues; 2.30A {Homo sapiens}
Probab=12.35 E-value=33 Score=25.62 Aligned_cols=19 Identities=37% Similarity=0.441 Sum_probs=15.7
Q ss_pred hhhhhhhhhhhhhcCCCCC
Q psy9260 37 SMKYKKLTNAQRSGLNQIP 55 (217)
Q Consensus 37 s~k~kkLTnAQRsGLsQIP 55 (217)
..+..+||.+||.||+++-
T Consensus 98 i~~W~~ls~~qk~~~~~~Y 116 (121)
T 3cki_B 98 VERWDQLTLSQRKGLNYRY 116 (121)
T ss_dssp CEETTTCCHHHHHHHHTTT
T ss_pred EeEchhCCHHHHHHHHHHH
Confidence 3578899999999998763
No 10
>3s9z_A Malate synthase G; inhibitor complex, structural genomics, mycobacterium tuberc structural proteomics project, XMTB; HET: I92; 1.79A {Mycobacterium tuberculosis} PDB: 3s9i_A* 3sad_A* 3saz_A* 3sb0_A* 1n8i_A 1n8w_A* 2gq3_A* 4ex4_A
Probab=11.84 E-value=41 Score=33.60 Aligned_cols=25 Identities=24% Similarity=0.120 Sum_probs=16.8
Q ss_pred hhhHHHHHHhhhhhHHHHHHH-----HHHHHHHHH
Q psy9260 93 TLKISLIQIFRAHLWQKVHES-----IVMDLCQHS 122 (217)
Q Consensus 93 TLKiSlIqIFR~hLWqkIHes-----iV~dlcqvl 122 (217)
||.|| |+||||=||-- -|++..+.+
T Consensus 636 TarIS-----rqqIwqWl~HGv~t~~qv~~~l~rm 665 (741)
T 3s9z_A 636 TLRIS-----SQLLANWLRHGVITSADVRASLERM 665 (741)
T ss_dssp HHHHH-----HHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred HHHHH-----HHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 66666 99999999953 445544443
Done!