Query psy9260
Match_columns 217
No_of_seqs 71 out of 73
Neff 2.4
Searched_HMMs 13730
Date Fri Aug 16 22:55:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9260.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/9260hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2o5ua1 d.38.1.1 (A:5-143) Hyp 35.4 6.1 0.00045 26.3 1.2 16 142-157 8-23 (139)
2 d2bcqa2 a.60.12.1 (A:329-385) 29.0 4.6 0.00034 26.4 -0.4 20 33-52 31-50 (57)
3 d2cyea1 d.38.1.1 (A:1-132) Pro 28.9 9.3 0.00068 25.8 1.2 18 142-159 4-21 (132)
4 d2oafa1 d.38.1.1 (A:1-143) Hyp 28.3 13 0.00098 25.0 2.0 22 139-160 4-25 (143)
5 d2e2dc1 b.40.3.1 (C:1001-1180) 27.1 18 0.0013 27.4 2.7 40 13-54 81-121 (180)
6 d2nuja1 d.38.1.1 (A:3-161) Hyp 26.9 41 0.003 22.9 4.5 56 143-201 23-90 (159)
7 d2fuja1 d.38.1.1 (A:5-122) Hyp 21.7 12 0.00088 24.9 0.7 15 146-160 6-20 (118)
8 d1bqua1 b.1.2.1 (A:5-99) Cytok 18.6 31 0.0023 21.4 2.2 24 56-80 17-40 (95)
9 d2ohwa1 d.79.8.1 (A:3-130) Unc 18.5 26 0.0019 25.6 2.0 44 153-196 68-114 (128)
10 d2oola2 d.110.3.9 (A:26-139) S 14.7 28 0.0021 22.8 1.2 12 181-192 15-26 (114)
No 1
>d2o5ua1 d.38.1.1 (A:5-143) Hypothetical thioesterase PA5185 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=35.41 E-value=6.1 Score=26.27 Aligned_cols=16 Identities=25% Similarity=0.439 Sum_probs=14.6
Q ss_pred ceeeEEeeeccCCCCC
Q psy9260 142 QKYWLDVQLRWGDYDS 157 (217)
Q Consensus 142 ~k~WiDvQLRWGdyDS 157 (217)
..|+..+++||||-|.
T Consensus 8 ~~~~~~i~Vr~~d~D~ 23 (139)
T d2o5ua1 8 YLHFQPISTRWHDNDI 23 (139)
T ss_dssp CSEEEEECCCGGGBCT
T ss_pred CcEEEEeecCHhHcCc
Confidence 4789999999999998
No 2
>d2bcqa2 a.60.12.1 (A:329-385) DNA polymerase lambda {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.00 E-value=4.6 Score=26.43 Aligned_cols=20 Identities=30% Similarity=0.365 Sum_probs=16.1
Q ss_pred CchhhhhhhhhhhhhhhcCC
Q psy9260 33 GFEESMKYKKLTNAQRSGLN 52 (217)
Q Consensus 33 gfE~s~k~kkLTnAQRsGLs 52 (217)
-+|+..+..+||++|+-||.
T Consensus 31 ti~dLr~~~~Ln~~Q~iGLk 50 (57)
T d2bcqa2 31 SLEDIRSQASLTTQQAIGLK 50 (57)
T ss_dssp SHHHHHHHCCCCHHHHHHHH
T ss_pred CHHHHHhcCCCCHHHHHhHH
Confidence 45777777789999999984
No 3
>d2cyea1 d.38.1.1 (A:1-132) Probable thioesterase TTHA1846 {Thermus thermophilus [TaxId: 274]}
Probab=28.93 E-value=9.3 Score=25.80 Aligned_cols=18 Identities=22% Similarity=0.316 Sum_probs=15.2
Q ss_pred ceeeEEeeeccCCCCCch
Q psy9260 142 QKYWLDVQLRWGDYDSHD 159 (217)
Q Consensus 142 ~k~WiDvQLRWGdyDShd 159 (217)
..|...+++||||-|...
T Consensus 4 ~~f~~~i~vr~~D~D~~g 21 (132)
T d2cyea1 4 FPVRVRVDVRFRDLDPLG 21 (132)
T ss_dssp CSEEEEEECCGGGBCTTS
T ss_pred CcEEEEEEeCHHHCCCCC
Confidence 358899999999999943
No 4
>d2oafa1 d.38.1.1 (A:1-143) Hypothetical protein Jann0674 {Jannaschia sp. ccs1 [TaxId: 290400]}
Probab=28.34 E-value=13 Score=25.03 Aligned_cols=22 Identities=32% Similarity=0.687 Sum_probs=17.9
Q ss_pred cccceeeEEeeeccCCCCCchh
Q psy9260 139 TTTQKYWLDVQLRWGDYDSHDI 160 (217)
Q Consensus 139 ~~t~k~WiDvQLRWGdyDShdI 160 (217)
.....|+..+++||+|-|..-+
T Consensus 4 ~p~~~F~~~~~Vr~~d~D~~Gh 25 (143)
T d2oafa1 4 RPDSAFVHDVRVTWGDCDPAKI 25 (143)
T ss_dssp CCTTCEEEEECCCGGGBCTTSS
T ss_pred CCCCCEEEEEEeCHHHcCCCCc
Confidence 3456899999999999999543
No 5
>d2e2dc1 b.40.3.1 (C:1001-1180) TIMP-2 {Cow (Bos taurus) [TaxId: 9913]}
Probab=27.15 E-value=18 Score=27.43 Aligned_cols=40 Identities=18% Similarity=0.230 Sum_probs=29.1
Q ss_pred ceeEEeeecc-cccceeecccCchhhhhhhhhhhhhhhcCCCC
Q psy9260 13 SQIYLFVHLL-KSRLKQEKASGFEESMKYKKLTNAQRSGLNQI 54 (217)
Q Consensus 13 ~~~~~~~~~~-weglfwekasgfE~s~k~kkLTnAQRsGLsQI 54 (217)
.+.||-.-.- .+|-.+-..=+|- +++.+||.+||-||++.
T Consensus 81 ~~~YLIaG~~~~dg~L~i~~C~~v--~~W~~lt~~Qr~gl~~~ 121 (180)
T d2e2dc1 81 KKEYLIAGKAEGNGNMHITLCDFI--VPWDTLSATQKKSLNHR 121 (180)
T ss_dssp SCEEEEEEEECSTTEEECCTTSCE--EEGGGSCHHHHHHTTTH
T ss_pred CcEEEEEEEcccCCcEEEecCCce--eehHHCCHHHHhhhhhh
Confidence 4678877654 3666665555563 57999999999999864
No 6
>d2nuja1 d.38.1.1 (A:3-161) Hypothetical protein Jann_1972 {Jannaschia sp. CCS1 [TaxId: 290400]}
Probab=26.93 E-value=41 Score=22.88 Aligned_cols=56 Identities=18% Similarity=0.174 Sum_probs=32.0
Q ss_pred eeeEEeeeccCCCCCchhh---------HHHHhhhhcccCCCcccCC--CCce-eEEEeeehhhcccccCC
Q psy9260 143 KYWLDVQLRWGDYDSHDIE---------RYARAKFLDYTTDNMSIYP--SPTG-VLIAIDLAYNLHRYIDY 201 (217)
Q Consensus 143 k~WiDvQLRWGdyDShdIe---------rY~R~kfldYTtD~~SiYP--SptG-~ii~iDLaYN~~sayG~ 201 (217)
.|=+.+++||||-|...+- .-||.+|++-.... +. ...| +++-.++-|.---.||.
T Consensus 23 ~~~~~~~Vr~~d~D~~ghv~n~~Y~~~~e~ar~~~l~~~g~~---~~~~~~~~~vv~~~~i~y~~p~~~gd 90 (159)
T d2nuja1 23 TFGLADRVRFGELDAIGHVNHTAYLRWYESFRLPFLKARHVT---DYGPTSPRLVLKQVHCTYLAEMGMGE 90 (159)
T ss_dssp CEEEEEECCGGGBCTTSSBCHHHHHHHHHHHHHHHHHHTTSC---CCSSSSCEEEEEEEEEEECSCCCTTC
T ss_pred ceEEEeEEchHHcCccCceehHHHHHHHHHHHHHHHHHhhhh---cccchhcceeeeEEEEEEecccccCc
Confidence 3558999999999993332 33466666543321 22 2333 34555666655555554
No 7
>d2fuja1 d.38.1.1 (A:5-122) Hypothetical protein XCC1147 {Xanthomonas campestris pv. campestris [TaxId: 340]}
Probab=21.70 E-value=12 Score=24.86 Aligned_cols=15 Identities=33% Similarity=0.713 Sum_probs=12.3
Q ss_pred EEeeeccCCCCCchh
Q psy9260 146 LDVQLRWGDYDSHDI 160 (217)
Q Consensus 146 iDvQLRWGdyDShdI 160 (217)
+.+++||+|-|...+
T Consensus 6 ~pi~Vr~~D~D~~Gh 20 (118)
T d2fuja1 6 VPISVRWRDMDSMGH 20 (118)
T ss_dssp EEECCCGGGBCTTSS
T ss_pred EEEEecHHHcCcCCc
Confidence 578999999998544
No 8
>d1bqua1 b.1.2.1 (A:5-99) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.60 E-value=31 Score=21.39 Aligned_cols=24 Identities=8% Similarity=0.194 Sum_probs=18.0
Q ss_pred CCceeeeeccccccceeeeeeeeee
Q psy9260 56 NRRFTLWWSPTINRANVYVGFQVQL 80 (217)
Q Consensus 56 NRRFtLWWSPTINRanVyVGfqvQl 80 (217)
...++|+|+|-.|... -++|.++.
T Consensus 17 ~~si~~~W~p~~~~~~-~~~y~v~~ 40 (95)
T d1bqua1 17 GKKMRCEWDGGRETHL-ETNFTLKS 40 (95)
T ss_dssp TSCCEEEEECCSCCSS-CCEEEEEE
T ss_pred CCEEEEEEeCcccCCC-ceEEEEEE
Confidence 4579999999987544 47887754
No 9
>d2ohwa1 d.79.8.1 (A:3-130) Uncharacterized protein YueI {Bacillus subtilis [TaxId: 1423]}
Probab=18.48 E-value=26 Score=25.61 Aligned_cols=44 Identities=23% Similarity=0.363 Sum_probs=31.8
Q ss_pred CCCCCchhhHH---HHhhhhcccCCCcccCCCCceeEEEeeehhhcc
Q psy9260 153 GDYDSHDIERY---ARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLH 196 (217)
Q Consensus 153 GdyDShdIerY---~R~kfldYTtD~~SiYPSptG~ii~iDLaYN~~ 196 (217)
|+.+...+..| |...=..||-=+--.|++|.|+||+-|=|.|.-
T Consensus 68 g~l~~~~~~~YiklA~~~~i~fTiV~~~~~~t~~gLVv~s~~Avn~e 114 (128)
T d2ohwa1 68 GELQYQSYSSYIQMASRYGVPFKIVSDLQFHTPLGIVIAADIAVNRE 114 (128)
T ss_dssp TTSCHHHHHHHHHHHHHTTCCEEEECCCSSCCSEEEEEEESSCCCCS
T ss_pred CCCChHHHHHHHHHHHHcCCCeEEeCCCCCCCCcEEEEEeCCccccc
Confidence 55565566666 445556677666667899999999999988753
No 10
>d2oola2 d.110.3.9 (A:26-139) Sensor protein PhyB2 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=14.70 E-value=28 Score=22.84 Aligned_cols=12 Identities=25% Similarity=0.542 Sum_probs=10.0
Q ss_pred CCceeEEEeeeh
Q psy9260 181 SPTGVLIAIDLA 192 (217)
Q Consensus 181 SptG~ii~iDLa 192 (217)
-|+|+|+++|-.
T Consensus 15 QphG~Llvld~~ 26 (114)
T d2oola2 15 QPHGYLFVVSET 26 (114)
T ss_dssp CTTSEEEEECTT
T ss_pred CCCcEEEEEECC
Confidence 489999999854
Done!