RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy9260
         (217 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 51.4 bits (122), Expect = 7e-08
 Identities = 31/202 (15%), Positives = 63/202 (31%), Gaps = 54/202 (26%)

Query: 11  EESQIYLFVHLLKSRLKQEKASGFE--ESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTIN 68
           E          + +   ++  + ++  + +   KLT    S LN +          P   
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL---------EPAEY 371

Query: 69  RANVYVGFQVQLDLTGIFMHG-KIPTLKISLIQIFRAHLWQKVHESIVMDLCQHSINFSP 127
           R   +           +F     IPT    L+ +    +W  V +S VM +      +S 
Sbjct: 372 RKM-FDRL-------SVFPPSAHIPT---ILLSL----IWFDVIKSDVMVVVNKLHKYS- 415

Query: 128 LMFISRDTMDSTTTQKYWL-DVQLRW-----GDYDSHD--IERYARAKFLDYTTDNMSIY 179
              + +   +ST      +  + L        +Y  H   ++ Y   K           +
Sbjct: 416 --LVEKQPKEST----ISIPSIYLELKVKLENEYALHRSIVDHYNIPK----------TF 459

Query: 180 PSPTGVLIAIDLAYNLHRYIDY 201
            S   +   +D  Y  + +I +
Sbjct: 460 DSDDLIPPYLD-QY-FYSHIGH 479



 Score = 36.0 bits (82), Expect = 0.007
 Identities = 31/227 (13%), Positives = 64/227 (28%), Gaps = 60/227 (26%)

Query: 7   QQSVEESQIYLFVHLLKSRLKQEKASGFEESMK--YKKLTNAQRSGLNQ--IPNRRFTLW 62
                 S        L S+ ++      EE ++  YK L +  ++   Q  +  R +   
Sbjct: 56  MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ 115

Query: 63  WSPTINRANVYVGFQV--------------QL-DLTGIFMHGKIPTLKISLI-------- 99
                N   V+  + V              +L     + + G + + K  +         
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYK 175

Query: 100 -------QIFRAHLWQKV-----HESIVM---DLC-QHSINFSPLMFISRDTMDSTTTQK 143
                  +IF    W  +      E+++     L  Q   N++     S +      + +
Sbjct: 176 VQCKMDFKIF----WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231

Query: 144 YWLDVQLRWGDY-----------DSHDIERYA-RAKFLDYTTDNMSI 178
             L   L+   Y           ++     +    K L  TT    +
Sbjct: 232 AELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL-LTTRFKQV 277


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 35.8 bits (82), Expect = 0.010
 Identities = 17/105 (16%), Positives = 32/105 (30%), Gaps = 34/105 (32%)

Query: 111 HESIVMDLCQHSINFSPLMFIS----RDTMDST---TTQKYWLDVQLRWGDYDSHDIERY 163
           H S+     +H +      F      ++  +      T+ +  D      D  +   E  
Sbjct: 13  HGSL-----EHVLLVPTASFFIASQLQEQFNKILPEPTEGFAAD------DEPTTPAELV 61

Query: 164 ARAKFLDYTTDNMSIYPSPTG--------VLIAIDLAY----NLH 196
            +  FL Y +  +   PS  G         L   +  Y    ++H
Sbjct: 62  GK--FLGYVSSLVE--PSKVGQFDQVLNLCLTEFENCYLEGNDIH 102



 Score = 33.5 bits (76), Expect = 0.061
 Identities = 27/173 (15%), Positives = 47/173 (27%), Gaps = 69/173 (39%)

Query: 4   NKTQQSV-EESQIYL--------FV--------HLLKSRLKQEKASGFEESMKYKKLTNA 46
           NKT   +    Q+ +         V        + L   L++ KA               
Sbjct: 354 NKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAP-------------- 399

Query: 47  QRSGLNQ--IP--NRRFTLWW----------SPTINRANVYVGFQVQLDLTGIFMHGKIP 92
             SGL+Q  IP   R+               S  +  A+      +  DL    +     
Sbjct: 400 --SGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASD----LINKDLVKNNVSFNAK 453

Query: 93  TLKISLIQIFRAHLWQKVHESIVMDLCQ------------------HSINFSP 127
            ++I +   F     + +  SI   +                    H ++F P
Sbjct: 454 DIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGP 506


>1ej6_A Lambda2; icosahedral, non-equivalence, dsRNA virus, methylase,
           methyltransferase, guanylyltransferase, zinc finger,
           icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
           PDB: 2cse_U
          Length = 1289

 Score = 31.0 bits (69), Expect = 0.33
 Identities = 18/88 (20%), Positives = 34/88 (38%), Gaps = 7/88 (7%)

Query: 110 VHESIVMDLCQHSINFSPLMFISRDTMDSTTTQKYWLDVQLRWGDYD----SHDIERYAR 165
           ++++++ DL     + S       D ++    +KY         D D    + D+  YA+
Sbjct: 138 INDTMIGDLLGTGASLSQFFQSHGDVLEVAAGRKYLQMENYSNDDDDPPLFAKDLSDYAK 197

Query: 166 AKFLDYTTDNMSI---YPSPTGVLIAID 190
           A + D           + S  GVL+  D
Sbjct: 198 AFYSDTYEVLDRFFWTHDSSAGVLVHYD 225


>1wmx_A COG3291: FOG: PKD repeat; CBM30, carbohydrate binding module
           family30, CELJ, sugar BIN protein; 2.00A {Clostridium
           thermocellum} SCOP: b.18.1.24 PDB: 1wzx_A 2c24_A
          Length = 205

 Score = 26.0 bits (56), Expect = 9.3
 Identities = 9/34 (26%), Positives = 17/34 (50%)

Query: 138 STTTQKYWLDVQLRWGDYDSHDIERYARAKFLDY 171
            TT Q  W    L    +++HD+ +Y    +L++
Sbjct: 56  QTTVQSGWWISLLTLRGWNTHDLSQYVENGYLEF 89


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.323    0.135    0.412 

Gapped
Lambda     K      H
   0.267   0.0473    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,207,683
Number of extensions: 176623
Number of successful extensions: 421
Number of sequences better than 10.0: 1
Number of HSP's gapped: 420
Number of HSP's successfully gapped: 10
Length of query: 217
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 127
Effective length of database: 4,188,903
Effective search space: 531990681
Effective search space used: 531990681
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (25.6 bits)