BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9266
(157 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2X6U|A Chain A, Crystal Structure Of Human Tbx5 In The Dna-Free Form
pdb|2X6V|A Chain A, Crystal Structure Of Human Tbx5 In The Dna-Bound And Dna-
Free Form
pdb|2X6V|B Chain B, Crystal Structure Of Human Tbx5 In The Dna-Bound And Dna-
Free Form
Length = 203
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 65/119 (54%), Gaps = 11/119 (9%)
Query: 12 VEVTLVNADLWQNFHAIGTEMIITKTGRTKISTRGRMFPSLQLQVSGLDQAAHYSLLVEF 71
++V L +LW FH +GTEMIITK GR RMFPS +++V+GL+ Y LL++
Sbjct: 6 IKVFLHERELWLKFHEVGTEMIITKAGR-------RMFPSYKVKVTGLNPKTKYILLMDI 58
Query: 72 HLASPHKYKY-KTSWEPVGDAERPIAHPAARLYSHPAGHALGSFWTGQTLHLNKIKLAN 129
A H+YK+ W G AE + RLY HP A G+ W Q + K+KL N
Sbjct: 59 VPADDHRYKFADNKWSVTGKAEPAM---PGRLYVHPDSPATGAHWMRQLVSFQKLKLTN 114
>pdb|1XBR|A Chain A, T Domain From Xenopus Laevis Bound To Dna
pdb|1XBR|B Chain B, T Domain From Xenopus Laevis Bound To Dna
Length = 184
Score = 80.5 bits (197), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 67/128 (52%), Gaps = 11/128 (8%)
Query: 12 VEVTLVNADLWQNFHAIGTEMIITKTGRTKISTRGRMFPSLQLQVSGLDQAAHYSLLVEF 71
++V+L DLW F + EMI+TK GR RMFP L++ +SGLD A Y++L++F
Sbjct: 2 LKVSLEERDLWTRFKELTNEMIVTKNGR-------RMFPVLKVSMSGLDPNAMYTVLLDF 54
Query: 72 HLASPHKYKY-KTSWEPVGDAERPIAHPAARLYSHPAGHALGSFWTGQTLHLNKIKLANA 130
A H++KY W P G +P + +Y HP G+ W + +K+KL N
Sbjct: 55 VAADNHRWKYVNGEWVPGG---KPEPQAPSCVYIHPDSPNFGAHWMKDPVSFSKVKLTNK 111
Query: 131 FVEGTRFL 138
G + +
Sbjct: 112 MNGGGQIM 119
>pdb|1H6F|A Chain A, Human Tbx3, A Transcription Factor Responsible For Ulnar-
Mammary Syndrome, Bound To A Palindromic Dna Site
pdb|1H6F|B Chain B, Human Tbx3, A Transcription Factor Responsible For Ulnar-
Mammary Syndrome, Bound To A Palindromic Dna Site
Length = 193
Score = 80.1 bits (196), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 64/118 (54%), Gaps = 11/118 (9%)
Query: 13 EVTLVNADLWQNFHAIGTEMIITKTGRTKISTRGRMFPSLQLQVSGLDQAAHYSLLVEFH 72
+V L +LW FH GTEM+ITK+GR RMFP +++ SGLD+ A Y LL++
Sbjct: 6 KVHLEAKELWDQFHKRGTEMVITKSGR-------RMFPPFKVRCSGLDKKAKYILLMDII 58
Query: 73 LASPHKYKYKTS-WEPVGDAERPIAHPAARLYSHPAGHALGSFWTGQTLHLNKIKLAN 129
A +YK+ S W G A+ + R+Y HP A G W + + +K+KL N
Sbjct: 59 AADDCRYKFHNSRWMVAGKADPEM---PKRMYIHPDSPATGEQWMSKVVTFHKLKLTN 113
>pdb|4A04|A Chain A, Structure Of The Dna-Bound T-Box Domain Of Human Tbx1, A
Transcription Factor Associated With The Digeorge
Syndrome
pdb|4A04|B Chain B, Structure Of The Dna-Bound T-Box Domain Of Human Tbx1, A
Transcription Factor Associated With The Digeorge
Syndrome
Length = 203
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 68/127 (53%), Gaps = 17/127 (13%)
Query: 12 VEVTLVNADLWQNFHAIGTEMIITKTGRTKISTRGRMFPSLQLQVSGLDQAAHYSLLVEF 71
V V L LW F+ +GTEMI+TK GR RMFP+ Q+++ G+D A Y LL++F
Sbjct: 16 VSVQLEMKALWDEFNQLGTEMIVTKAGR-------RMFPTFQVKLFGMDPMADYMLLMDF 68
Query: 72 HLASPHKYKY---KTSWEPVGDAERPIAHPA--ARLYSHPAGHALGSFWTGQTLHLNKIK 126
+Y+Y +SW G A+ PA R++ HP A G+ W Q + +K+K
Sbjct: 69 VPVDDKRYRYAFHSSSWLVAGKAD-----PATPGRVHYHPDSPAKGAQWMKQIVSFDKLK 123
Query: 127 LANAFVE 133
L N ++
Sbjct: 124 LTNNLLD 130
>pdb|3RSJ|A Chain A, Structure Of Hcrf In Complex With Ganglioside Gd1a
pdb|3RSJ|B Chain B, Structure Of Hcrf In Complex With Ganglioside Gd1a
pdb|3RSJ|C Chain C, Structure Of Hcrf In Complex With Ganglioside Gd1a
pdb|3RSJ|D Chain D, Structure Of Hcrf In Complex With Ganglioside Gd1a
Length = 413
Score = 30.4 bits (67), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 29 GTEMIITKTGRTKISTRGRMFPSLQLQ-VSGLDQAAHYSLLVEFHLASPHK 78
G E+II K G T IS L ++ +D+ Y L + +A P K
Sbjct: 281 GVEVIIRKNGSTDISNTDNFVRKNDLAYINVVDRDVEYRLYADISIAKPEK 331
>pdb|3FUQ|A Chain A, Glycosylated Sv2 And Gangliosides As Dual Receptors For
Botulinum Neurotoxin Serotype F
Length = 417
Score = 30.4 bits (67), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 29 GTEMIITKTGRTKISTRGRMFPSLQLQ-VSGLDQAAHYSLLVEFHLASPHK 78
G E+II K G T IS L ++ +D+ Y L + +A P K
Sbjct: 285 GVEVIIRKNGSTDISNTDNFVRKNDLAYINVVDRDVEYRLYADISIAKPEK 335
>pdb|3TON|A Chain A, Crystral Structure Of The C-Terminal Subunit Of Human
Maltase- Glucoamylase
pdb|3TON|B Chain B, Crystral Structure Of The C-Terminal Subunit Of Human
Maltase- Glucoamylase
pdb|3TOP|A Chain A, Crystral Structure Of The C-Terminal Subunit Of Human
Maltase- Glucoamylase In Complex With Acarbose
pdb|3TOP|B Chain B, Crystral Structure Of The C-Terminal Subunit Of Human
Maltase- Glucoamylase In Complex With Acarbose
Length = 908
Score = 30.0 bits (66), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 41 KISTRGRMFPSLQLQVSGLDQAAHYSLLVEFHLASPHKYKYKTSWEPVGDAERPIAHPAA 100
K S FPS + LD H + +++F + P+K +Y+ P+ P + P
Sbjct: 71 KSSVYANAFPSTPVNPLRLDVTYHKNEMLQFKIYDPNKNRYEVP-VPLNIPSMPSSTPEG 129
Query: 101 RLYS 104
+LY
Sbjct: 130 QLYD 133
>pdb|2A6P|A Chain A, Structure Solution To 2.2 Angstrom And Functional
Characterisation Of The Open Reading Frame Rv3214 From
Mycobacterium Tuberculosis
pdb|2A6P|B Chain B, Structure Solution To 2.2 Angstrom And Functional
Characterisation Of The Open Reading Frame Rv3214 From
Mycobacterium Tuberculosis
Length = 208
Score = 26.9 bits (58), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 26 HAIGTEMIITKTGRTKISTRGRMFPSLQL 54
H GTE+ +T TGRT+ G++ L+L
Sbjct: 29 HTGGTEVELTDTGRTQAELAGQLLGELEL 57
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,555,887
Number of Sequences: 62578
Number of extensions: 174839
Number of successful extensions: 391
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 378
Number of HSP's gapped (non-prelim): 9
length of query: 157
length of database: 14,973,337
effective HSP length: 91
effective length of query: 66
effective length of database: 9,278,739
effective search space: 612396774
effective search space used: 612396774
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)