RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9266
(157 letters)
>gnl|CDD|238106 cd00182, TBOX, T-box DNA binding domain of the T-box family of
transcriptional regulators. The T-box family is an
ancient group that appears to play a critical role in
development in all animal species. These genes were
uncovered on the basis of similarity to the DNA binding
domain of murine Brachyury (T) gene product, the
defining feature of the family. Common features shared
by T-box family members are DNA-binding and
transcriptional regulatory activity, a role in
development and conserved expression patterns, most of
the known genes in all species being expressed in
mesoderm or mesoderm precursors.
Length = 188
Score = 121 bits (306), Expect = 1e-35
Identities = 51/120 (42%), Positives = 72/120 (60%), Gaps = 11/120 (9%)
Query: 11 NVEVTLVNADLWQNFHAIGTEMIITKTGRTKISTRGRMFPSLQLQVSGLDQAAHYSLLVE 70
++V+L N +LW+ FH +GTEMIITK+GR RMFP+L+++VSGLD A YS+L++
Sbjct: 1 GIKVSLENRELWKKFHELGTEMIITKSGR-------RMFPTLKVKVSGLDPNALYSVLMD 53
Query: 71 FHLASPHKYKY-KTSWEPVGDAERPIAHPAARLYSHPAGHALGSFWTGQTLHLNKIKLAN 129
H+YK+ W G AE H R+Y HP A G+ W Q + +K+KL N
Sbjct: 54 LVPVDDHRYKFSGGKWVVAGKAE---PHLPPRVYVHPDSPATGAHWMKQPVSFDKLKLTN 110
>gnl|CDD|216184 pfam00907, T-box, T-box. The T-box encodes a 180 amino acid domain
that binds to DNA. Genes encoding T-box proteins are
found in a wide range of animals, but not in other
kingdoms such as plants. Family members are all thought
to bind to the DNA consensus sequence TCACACCT. they are
found exclusively in the nucleus, and perform
DNA-binding and transcriptional activation/repression
roles. They are generally required for development of
the specific tissues they are expressed in, and
mutations in T-box genes are implicated in human
conditions such as DiGeorge syndrome and X-linked cleft
palate, which feature malformations.
Length = 182
Score = 115 bits (291), Expect = 2e-33
Identities = 52/118 (44%), Positives = 70/118 (59%), Gaps = 11/118 (9%)
Query: 13 EVTLVNADLWQNFHAIGTEMIITKTGRTKISTRGRMFPSLQLQVSGLDQAAHYSLLVEFH 72
V+L + +LW FH +GTEMIITK+GR RMFP+L++ VSGLD A YS+L++F
Sbjct: 1 TVSLEDRELWDKFHELGTEMIITKSGR-------RMFPTLKVSVSGLDPNALYSVLLDFV 53
Query: 73 LASPHKYKY-KTSWEPVGDAERPIAHPAARLYSHPAGHALGSFWTGQTLHLNKIKLAN 129
H+YK+ W G AE HP R+Y HP A G+ W Q + +K+KL N
Sbjct: 54 PVDDHRYKFHNGEWVVAGKAEP---HPPPRVYIHPDSPATGAHWMKQPVSFDKVKLTN 108
>gnl|CDD|214656 smart00425, TBOX, Domain first found in the mice T locus
(Brachyury) protein.
Length = 190
Score = 112 bits (282), Expect = 5e-32
Identities = 48/119 (40%), Positives = 71/119 (59%), Gaps = 11/119 (9%)
Query: 12 VEVTLVNADLWQNFHAIGTEMIITKTGRTKISTRGRMFPSLQLQVSGLDQAAHYSLLVEF 71
++V+L + +LW+ FH +GTEMI+TK+GR RMFP+L+ +VSGLD A YS+L++
Sbjct: 1 IKVSLEDKELWRKFHELGTEMIVTKSGR-------RMFPTLKYKVSGLDPNALYSVLMDL 53
Query: 72 HLASPHKYKY-KTSWEPVGDAERPIAHPAARLYSHPAGHALGSFWTGQTLHLNKIKLAN 129
+YK+ W G AE H +R+Y HP A G+ W Q + +K+KL N
Sbjct: 54 VPVDDKRYKFNNGKWVVAGKAEP---HMPSRVYVHPDSPATGAHWMKQPVSFDKVKLTN 109
>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing
protein; Provisional.
Length = 697
Score = 31.0 bits (70), Expect = 0.24
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 9/74 (12%)
Query: 81 YKTSWEPVGDAERPIAHPAARLYSHPAGHALGSFWTGQTLHLNKIKLANAFVEGTRFLEV 140
++ WE DAE R A LGS GQ LH +K V G F+
Sbjct: 212 FREMWEDGSDAEPRTFVVMLR-----ASAGLGSARAGQQLHCCVLKTG---VVGDTFVSC 263
Query: 141 RHLLLIYPQCGQIQ 154
L+ +Y +CG I+
Sbjct: 264 A-LIDMYSKCGDIE 276
>gnl|CDD|239487 cd03393, PAP2_like_3, PAP2_like_3 proteins. PAP2 is a super-family
of phosphatases and haloperoxidases. This subgroup,
which is specific to bacteria and archaea, lacks
functional characterization and may act as a
membrane-associated lipid phosphatase.
Length = 125
Score = 28.5 bits (64), Expect = 0.72
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 78 KYKYKTSWEPVGDAERPIAHPAARLYSHPAGHALGS--FWTGQTLHLNK 124
K +K D + I +A Y P+GHA S FW LH+ K
Sbjct: 33 KEVFKIPRPFTYDGIQAIYEESAGGYGFPSGHAQTSATFWGSLMLHVRK 81
>gnl|CDD|238716 cd01436, Dipth_tox_like, Mono-ADP-ribosylating toxins catalyze the
transfer of ADP_ribose from NAD+ to eukaryotic
Elongation Factor 2, halting protein synthesis. A single
molecule of delivered toxin is sufficient to kill a
cell. These toxins share mono-ADP-ribosylating activity
with a variety of bacterial toxins, such as cholera
toxin and pertussis toxin. The structural core is
homologous to the poly-ADP ribosylating enzymes such as
the PARP enzymes and Tankyrase. Diphtheria toxin is
encoded by a lysogenic bacteriophage. Both diphtheria
toxin and Pseudomonas aeruginosa exotoxin A are
multi-domain proteins. These domains provide a EF2
ADP_ribosylating, receptor-binding, and intracellular
trafficking/transmembrane functions .
Length = 147
Score = 28.0 bits (61), Expect = 1.5
Identities = 2/45 (4%), Positives = 7/45 (15%)
Query: 81 YKTSWEPVGDAERPIAHPAARLYSHPAGHALGSFWTGQTLHLNKI 125
+ ++ + G G +
Sbjct: 75 LALKVDNAETIKKELGLSLTEPLMEQVGTEEFIKRFGDGASRVVL 119
>gnl|CDD|79035 PRK12559, PRK12559, transcriptional regulator Spx; Provisional.
Length = 131
Score = 27.0 bits (59), Expect = 3.5
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 34 ITKTGRTKI-STRGRMFPSLQLQVSGLDQAAHYSLLVEFHL 73
+T+ G T+I STR + F L + + L Y L++E L
Sbjct: 48 LTEEGATEIISTRSKTFQDLNINIEELSLNEFYKLIIEHPL 88
>gnl|CDD|183547 PRK12475, PRK12475, thiamine/molybdopterin biosynthesis MoeB-like
protein; Provisional.
Length = 338
Score = 27.0 bits (60), Expect = 4.7
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 12/58 (20%)
Query: 1 MKIYADADFSNVEVTLVNADLWQNFHAIGTEMIITKTGRTKIST-----RGRMFPSLQ 53
+KI + DF + T ++ D+W N + M I K + K T R +PSL
Sbjct: 203 LKILVE-DFEALRETFLSFDIWNNQN-----MSI-KVNKQKKDTCPSCGLTRTYPSLT 253
>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein;
Provisional.
Length = 617
Score = 27.1 bits (60), Expect = 4.7
Identities = 17/59 (28%), Positives = 18/59 (30%), Gaps = 9/59 (15%)
Query: 53 QLQVSGLDQAAHYSLLVEFHLASPHKYKYKTS-WEPVGDAERPIAHPAARLYSHPAGHA 110
Q Q G A Y ASP Y + DA RP R Y HP
Sbjct: 168 QQQRLGFPPRAPY--------ASPASYAPEQERDREPYDAGRPEYDQRRRDYDHPRPDW 218
>gnl|CDD|237584 PRK14014, PRK14014, putative acyltransferase; Provisional.
Length = 301
Score = 26.4 bits (59), Expect = 6.3
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 131 FVEGTRFLEVRH 142
FVEGTRF +H
Sbjct: 180 FVEGTRFTPEKH 191
>gnl|CDD|117729 pfam09175, DUF1944, Domain of unknown function (DUF1944).
Members of this family adopt a structure consisting of
several large open beta-sheets. Their exact function
has not, as yet, been determined.
Length = 165
Score = 26.1 bits (58), Expect = 7.1
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 52 LQLQVSGLDQAAHYSLLVEFHLASPHKYKYKTSW 85
+QL V+ L + ++ + + L S HK K +W
Sbjct: 32 VQLIVANLAENDNWKICADAVLLSKHKVMAKIAW 65
>gnl|CDD|224193 COG1274, PckA, Phosphoenolpyruvate carboxykinase (GTP) [Energy
production and conversion].
Length = 608
Score = 26.6 bits (59), Expect = 7.8
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 77 HKYKYKTSWEPVGDAERPIAHPAAR 101
+K + G+ P AHP +R
Sbjct: 367 ELIDWKGNDWRPGETGEPAAHPNSR 391
>gnl|CDD|144961 pfam01561, Hanta_G2, Hantavirus glycoprotein G2. The medium (M)
genome segment of hantaviruses (family Bunyaviridae)
encodes the two virion glycoproteins. G1 and G2, as a
precursor protein in the complementary sense RNA.
Length = 486
Score = 26.3 bits (58), Expect = 9.4
Identities = 15/61 (24%), Positives = 22/61 (36%), Gaps = 3/61 (4%)
Query: 64 HYSLLVEFHLASPHKYKYKTSWE-PVGDAER-PIAHPAARLYSHPAGHALGSFWTGQTLH 121
L ++F L S KY Y+ P + E+ P + H LG W +
Sbjct: 21 KTDLELDFSLPSSSKYTYRRKLTNPANEQEKIPFHLQIEKQVIHAEIQHLGH-WMDARFN 79
Query: 122 L 122
L
Sbjct: 80 L 80
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.135 0.413
Gapped
Lambda K H
0.267 0.0751 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,875,025
Number of extensions: 682759
Number of successful extensions: 447
Number of sequences better than 10.0: 1
Number of HSP's gapped: 441
Number of HSP's successfully gapped: 18
Length of query: 157
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 68
Effective length of database: 6,990,096
Effective search space: 475326528
Effective search space used: 475326528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (24.9 bits)