RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9266
(157 letters)
>2x6u_A T-box transcription factor TBX5; developmental protein,
DNA-binding, HOLT-ORAM-syndrome, IG-fold, nuclear
protein, repressor; HET: PE4; 1.90A {Homo sapiens} PDB:
2x6v_A*
Length = 203
Score = 105 bits (262), Expect = 3e-29
Identities = 48/121 (39%), Positives = 65/121 (53%), Gaps = 11/121 (9%)
Query: 10 SNVEVTLVNADLWQNFHAIGTEMIITKTGRTKISTRGRMFPSLQLQVSGLDQAAHYSLLV 69
++V L +LW FH +GTEMIITK GR RMFPS +++V+GL+ Y LL+
Sbjct: 4 EGIKVFLHERELWLKFHEVGTEMIITKAGR-------RMFPSYKVKVTGLNPKTKYILLM 56
Query: 70 EFHLASPHKYKYKTS-WEPVGDAERPIAHPAARLYSHPAGHALGSFWTGQTLHLNKIKLA 128
+ A H+YK+ + W G AE RLY HP A G+ W Q + K+KL
Sbjct: 57 DIVPADDHRYKFADNKWSVTGKAE---PAMPGRLYVHPDSPATGAHWMRQLVSFQKLKLT 113
Query: 129 N 129
N
Sbjct: 114 N 114
>1xbr_A Protein (T protein); complex (transcription factor/DNA),
transcription factor, DNA-binding protein,
transcription/DNA complex; HET: DNA; 2.50A {Xenopus
laevis} SCOP: b.2.5.4
Length = 184
Score = 98.6 bits (245), Expect = 6e-27
Identities = 43/119 (36%), Positives = 63/119 (52%), Gaps = 11/119 (9%)
Query: 12 VEVTLVNADLWQNFHAIGTEMIITKTGRTKISTRGRMFPSLQLQVSGLDQAAHYSLLVEF 71
++V+L DLW F + EMI+TK GR RMFP L++ +SGLD A Y++L++F
Sbjct: 2 LKVSLEERDLWTRFKELTNEMIVTKNGR-------RMFPVLKVSMSGLDPNAMYTVLLDF 54
Query: 72 HLASPHKYKYKTS-WEPVGDAERPIAHPAARLYSHPAGHALGSFWTGQTLHLNKIKLAN 129
A H++KY W P G E + +Y HP G+ W + +K+KL N
Sbjct: 55 VAADNHRWKYVNGEWVPGGKPE---PQAPSCVYIHPDSPNFGAHWMKDPVSFSKVKLTN 110
>4a04_A T-box transcription factor TBX1; transcription, T-box proteins;
HET: DNA; 2.58A {Homo sapiens}
Length = 203
Score = 96.1 bits (238), Expect = 1e-25
Identities = 45/147 (30%), Positives = 71/147 (48%), Gaps = 14/147 (9%)
Query: 10 SNVEVTLVNADLWQNFHAIGTEMIITKTGRTKISTRGRMFPSLQLQVSGLDQAAHYSLLV 69
V V L LW F+ +GTEMI+TK GR RMFP+ Q+++ G+D A Y LL+
Sbjct: 14 GGVSVQLEMKALWDEFNQLGTEMIVTKAGR-------RMFPTFQVKLFGMDPMADYMLLM 66
Query: 70 EFHLASPHKYKYKT---SWEPVGDAERPIAHPAARLYSHPAGHALGSFWTGQTLHLNKIK 126
+F +Y+Y SW G A+ R++ HP A G+ W Q + +K+K
Sbjct: 67 DFVPVDDKRYRYAFHSSSWLVAGKAD---PATPGRVHYHPDSPAKGAQWMKQIVSFDKLK 123
Query: 127 LANAFVEGTRFLEVRHLLLIYPQCGQI 153
L N ++ + + + + Y +
Sbjct: 124 LTNNLLDDNGHIIL-NSMHRYQPRFHV 149
>1h6f_A T-box transcription factor TBX3; transcription factor, TBX3, T-box
transcription factor; 1.7A {Homo sapiens} SCOP: b.2.5.4
Length = 193
Score = 94.5 bits (234), Expect = 4e-25
Identities = 45/121 (37%), Positives = 64/121 (52%), Gaps = 11/121 (9%)
Query: 10 SNVEVTLVNADLWQNFHAIGTEMIITKTGRTKISTRGRMFPSLQLQVSGLDQAAHYSLLV 69
+ +V L +LW FH GTEM+ITK+GR RMFP +++ SGLD+ A Y LL+
Sbjct: 3 DDPKVHLEAKELWDQFHKRGTEMVITKSGR-------RMFPPFKVRCSGLDKKAKYILLM 55
Query: 70 EFHLASPHKYKYKTS-WEPVGDAERPIAHPAARLYSHPAGHALGSFWTGQTLHLNKIKLA 128
+ A +YK+ S W G A+ R+Y HP A G W + + +K+KL
Sbjct: 56 DIIAADDCRYKFHNSRWMVAGKAD---PEMPKRMYIHPDSPATGEQWMSKVVTFHKLKLT 112
Query: 129 N 129
N
Sbjct: 113 N 113
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.6 bits (79), Expect = 0.009
Identities = 31/179 (17%), Positives = 49/179 (27%), Gaps = 61/179 (34%)
Query: 19 ADLWQNFHA-----------IGTE-------MIITKTGRTKISTRGRMFPSLQLQVSGLD 60
D W++F IG + + PS L +S L
Sbjct: 286 TDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLT 345
Query: 61 QAAHYSLLVEFHLASPHKYKYKTSWEPVGDAERPIAHPAARLYSHP-----AGH--ALGS 113
Q V+ ++ + + A + + L + +G +L
Sbjct: 346 QEQ-----VQDYVNKTNSH---------LPAGKQV---EISLVNGAKNLVVSGPPQSLYG 388
Query: 114 FWTGQTLHLNKIKLANA-------FVE-----GTRFLEVR---HLLLIYPQCGQIQSDM 157
L L K K + F E RFL V H L+ P I D+
Sbjct: 389 L----NLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDL 443
Score = 28.5 bits (63), Expect = 1.2
Identities = 26/134 (19%), Positives = 40/134 (29%), Gaps = 52/134 (38%)
Query: 10 SNVEVTLVNADLWQNFHAIGTEMIITKTGRTKISTRGRMFPSLQLQV------SGLDQA- 62
VE++LVN +N ++ +G + S G L L + SGLDQ+
Sbjct: 364 KQVEISLVNGA--KNL-------VV--SGPPQ-SLYG-----LNLTLRKAKAPSGLDQSR 406
Query: 63 AHYS----------LLVE--FHLASPHKYKYKTSWEPVGDAERPIAHPAARLYSHPAGHA 110
+S L V FH S + A I +
Sbjct: 407 IPFSERKLKFSNRFLPVASPFH--SHL----------LVPASDLINKDLVKNNVSFNAKD 454
Query: 111 LG----SFWTGQTL 120
+ + G L
Sbjct: 455 IQIPVYDTFDGSDL 468
Score = 26.9 bits (59), Expect = 3.8
Identities = 18/100 (18%), Positives = 34/100 (34%), Gaps = 23/100 (23%)
Query: 56 VS----GLDQAAHYSLLVEFHLASPHKYKYKTSWEPVGDAERPIAHPAARLYSHPAGHAL 111
+S G+ Q AHY + + +P + + G ++ + A + A
Sbjct: 236 ISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGA-TGHSQGLVT--AVAI-------AE 285
Query: 112 GSFWTGQTLHLNKIK-LANAFVEGTRFLEVRHLLLIYPQC 150
W ++ ++ K + F G R E YP
Sbjct: 286 TDSW--ESFFVSVRKAITVLFFIGVRCYEA------YPNT 317
>1lsh_B Lipovitellin (LV-2); vitellogenin, lipoprotein, plasma apolipoprote
apolipoprotein B, APOB; HET: PLD UPL; 1.90A
{Ichthyomyzon unicuspis} SCOP: f.7.1.1
Length = 319
Score = 28.7 bits (63), Expect = 0.90
Identities = 13/62 (20%), Positives = 22/62 (35%), Gaps = 9/62 (14%)
Query: 50 PSLQLQVSGLDQAAHYSLLVEFHLASPHKYKYKTSW---------EPVGDAERPIAHPAA 100
P ++ L + + L +F L++ K K W +HPAA
Sbjct: 85 PKAKIVAVELSDLSVWKLCAKFRLSAHMKAKAAIGWGKNCQQYRAMLEASTGNLQSHPAA 144
Query: 101 RL 102
R+
Sbjct: 145 RV 146
>2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI,
protein structure initiative; 1.80A {Sulfolobus
solfataricus P2} SCOP: b.40.4.15 PDB: 3irb_A
Length = 145
Score = 26.5 bits (58), Expect = 3.3
Identities = 9/37 (24%), Positives = 12/37 (32%), Gaps = 3/37 (8%)
Query: 84 SWEPVGDAERPIAHPAARL---YSHPAGHALGSFWTG 117
SWE G + Y + G A F+ G
Sbjct: 3 SWEKSGKEGSLLRWYDVMEAERYEYTVGPAGEQFFNG 39
>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein,
unknown function, structural genomics, MCSG, protein
structure initiative; 2.00A {Saccharomyces cerevisiae}
Length = 254
Score = 26.1 bits (58), Expect = 5.0
Identities = 11/51 (21%), Positives = 15/51 (29%), Gaps = 6/51 (11%)
Query: 75 SPHKYKYKTSWEPVGDAERP--IAHPAARLYSHPAGHALGSFWTGQTLHLN 123
S + K + A A+L A H + GQ L N
Sbjct: 199 SAEQLKMFRGLKENNQLLDSSVPATVYAKL----ALHGIPDGVNGQYLSYN 245
>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain,
structura genomics consortium, SGC, oxidoreductase;
1.80A {Homo sapiens}
Length = 260
Score = 25.7 bits (57), Expect = 6.8
Identities = 6/38 (15%), Positives = 9/38 (23%), Gaps = 6/38 (15%)
Query: 86 EPVGDAERP--IAHPAARLYSHPAGHALGSFWTGQTLH 121
AE L + P +G+ L
Sbjct: 219 SAFSSAETTELSGKCVVALATDPNI----LSLSGKVLP 252
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.135 0.413
Gapped
Lambda K H
0.267 0.0479 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,374,450
Number of extensions: 125430
Number of successful extensions: 282
Number of sequences better than 10.0: 1
Number of HSP's gapped: 273
Number of HSP's successfully gapped: 18
Length of query: 157
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 71
Effective length of database: 4,300,587
Effective search space: 305341677
Effective search space used: 305341677
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.8 bits)