RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9266
         (157 letters)



>d1xbra_ b.2.5.4 (A:) T domain from Brachyury transcription factor
           {African clawed frog (Xenopus laevis) [TaxId: 8355]}
          Length = 184

 Score =  129 bits (325), Expect = 2e-39
 Identities = 43/119 (36%), Positives = 63/119 (52%), Gaps = 11/119 (9%)

Query: 12  VEVTLVNADLWQNFHAIGTEMIITKTGRTKISTRGRMFPSLQLQVSGLDQAAHYSLLVEF 71
           ++V+L   DLW  F  +  EMI+TK GR       RMFP L++ +SGLD  A Y++L++F
Sbjct: 2   LKVSLEERDLWTRFKELTNEMIVTKNGR-------RMFPVLKVSMSGLDPNAMYTVLLDF 54

Query: 72  HLASPHKYKY-KTSWEPVGDAERPIAHPAARLYSHPAGHALGSFWTGQTLHLNKIKLAN 129
             A  H++KY    W P G  E       + +Y HP     G+ W    +  +K+KL N
Sbjct: 55  VAADNHRWKYVNGEWVPGGKPE---PQAPSCVYIHPDSPNFGAHWMKDPVSFSKVKLTN 110


>d1h6fa_ b.2.5.4 (A:) T-box protein 3, tbx3 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 184

 Score =  121 bits (305), Expect = 3e-36
 Identities = 44/120 (36%), Positives = 64/120 (53%), Gaps = 11/120 (9%)

Query: 11  NVEVTLVNADLWQNFHAIGTEMIITKTGRTKISTRGRMFPSLQLQVSGLDQAAHYSLLVE 70
           + +V L   +LW  FH  GTEM+ITK+GR       RMFP  +++ SGLD+ A Y LL++
Sbjct: 1   DPKVHLEAKELWDQFHKRGTEMVITKSGR-------RMFPPFKVRCSGLDKKAKYILLMD 53

Query: 71  FHLASPHKYKY-KTSWEPVGDAERPIAHPAARLYSHPAGHALGSFWTGQTLHLNKIKLAN 129
              A   +YK+  + W   G A+        R+Y HP   A G  W  + +  +K+KL N
Sbjct: 54  IIAADDCRYKFHNSRWMVAGKAD---PEMPKRMYIHPDSPATGEQWMSKVVTFHKLKLTN 110


>d1lshb_ f.7.1.1 (B:) Lipovitellin-phosvitin complex; beta-sheet
           shell regions {Lamprey (Ichthyomyzon unicuspis) [TaxId:
           30308]}
          Length = 174

 Score = 27.8 bits (62), Expect = 0.36
 Identities = 13/62 (20%), Positives = 22/62 (35%), Gaps = 9/62 (14%)

Query: 50  PSLQLQVSGLDQAAHYSLLVEFHLASPHKYKYKTSW---------EPVGDAERPIAHPAA 100
           P  ++    L   + + L  +F L++  K K    W                   +HPAA
Sbjct: 35  PKAKIVAVELSDLSVWKLCAKFRLSAHMKAKAAIGWGKNCQQYRAMLEASTGNLQSHPAA 94

Query: 101 RL 102
           R+
Sbjct: 95  RV 96


>d1d2ta_ a.111.1.1 (A:) Bacterial acid phosphatase {Escherichia
           blattae [TaxId: 563]}
          Length = 224

 Score = 24.7 bits (53), Expect = 5.7
 Identities = 8/49 (16%), Positives = 13/49 (26%), Gaps = 4/49 (8%)

Query: 78  KYKYKTSWEPVGDAERPI----AHPAARLYSHPAGHALGSFWTGQTLHL 122
           K  Y                      ++  S+P+GH    + T   L  
Sbjct: 109 KDHYMRIRPFAFYGVSTCNTTEQDKLSKNGSYPSGHTSIGWATALVLAE 157


>d1gnta_ e.26.1.1 (A:) Hybrid cluster protein (prismane protein)
           {Desulfovibrio vulgaris [TaxId: 881]}
          Length = 553

 Score = 24.4 bits (53), Expect = 9.1
 Identities = 8/25 (32%), Positives = 12/25 (48%)

Query: 96  AHPAARLYSHPAGHALGSFWTGQTL 120
            +PA + Y H  G+  GS+W     
Sbjct: 274 YYPAFKKYPHFVGNYGGSWWQQNPE 298


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.135    0.413 

Gapped
Lambda     K      H
   0.267   0.0614    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 569,980
Number of extensions: 22690
Number of successful extensions: 36
Number of sequences better than 10.0: 1
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 5
Length of query: 157
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 79
Effective length of database: 1,336,656
Effective search space: 105595824
Effective search space used: 105595824
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (22.9 bits)