Query psy9269
Match_columns 148
No_of_seqs 130 out of 829
Neff 7.1
Searched_HMMs 29240
Date Fri Aug 16 23:07:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9269.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9269hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f92_B U5 small nuclear ribonu 100.0 7.4E-30 2.5E-34 243.3 13.0 142 1-147 1311-1456(1724)
2 4f92_B U5 small nuclear ribonu 100.0 1.7E-28 5.7E-33 234.1 13.4 145 1-147 476-625 (1724)
3 2p6r_A Afuhel308 helicase; pro 99.7 1.3E-17 4.4E-22 146.9 12.1 121 3-147 394-522 (702)
4 2zj8_A DNA helicase, putative 99.7 2.8E-17 9.5E-22 145.1 13.1 125 3-147 393-527 (720)
5 2va8_A SSO2462, SKI2-type heli 99.7 5E-17 1.7E-21 143.1 9.3 119 3-147 415-542 (715)
6 3im1_A Protein SNU246, PRE-mRN 98.9 1.6E-10 5.6E-15 94.0 1.4 48 100-147 5-56 (328)
7 2q0z_X Protein Pro2281; SEC63, 98.9 3.9E-10 1.3E-14 92.2 1.9 46 102-147 11-60 (339)
8 2xau_A PRE-mRNA-splicing facto 95.7 0.013 4.3E-07 52.5 5.4 59 81-143 489-550 (773)
9 2xvc_A ESCRT-III, SSO0910; cel 90.3 0.051 1.7E-06 33.3 -0.0 48 36-99 11-58 (59)
10 3i4u_A ATP-dependent RNA helic 82.7 1.8 6.2E-05 33.8 5.0 42 81-126 18-59 (270)
11 1r7j_A Conserved hypothetical 80.3 1.6 5.3E-05 28.7 3.3 33 81-114 35-67 (95)
12 3hrs_A Metalloregulator SCAR; 77.8 2 6.7E-05 32.1 3.6 49 67-116 22-70 (214)
13 1on2_A Transcriptional regulat 77.4 2.3 7.7E-05 29.0 3.6 36 81-116 37-72 (142)
14 2p8t_A Hypothetical protein PH 76.7 2.2 7.4E-05 32.2 3.5 34 81-115 45-78 (200)
15 3iz6_S 40S ribosomal protein S 75.8 2.1 7.3E-05 30.8 3.1 32 81-112 101-132 (146)
16 2qq9_A Diphtheria toxin repres 73.7 3.3 0.00011 31.0 3.9 38 81-118 39-76 (226)
17 3u5c_T 40S ribosomal protein S 73.5 3.2 0.00011 29.7 3.5 32 81-112 99-130 (144)
18 2h09_A Transcriptional regulat 72.9 16 0.00055 25.0 7.2 35 81-115 69-103 (155)
19 2xzm_T RPS19E; ribosome, trans 69.4 4.7 0.00016 29.2 3.7 32 81-112 102-138 (155)
20 1tbx_A ORF F-93, hypothetical 67.7 2.9 9.9E-05 26.7 2.1 34 81-114 41-77 (99)
21 2x4h_A Hypothetical protein SS 66.9 5.3 0.00018 26.9 3.5 35 81-116 46-80 (139)
22 1fx7_A Iron-dependent represso 66.5 5.8 0.0002 29.6 3.9 35 81-115 39-73 (230)
23 3b73_A PHIH1 repressor-like pr 65.3 5.6 0.00019 26.9 3.2 32 81-112 44-75 (111)
24 3oop_A LIN2960 protein; protei 63.2 7 0.00024 26.2 3.5 36 81-116 66-107 (143)
25 3ech_A MEXR, multidrug resista 62.9 5.8 0.0002 26.6 3.0 36 81-116 66-107 (142)
26 3hsr_A HTH-type transcriptiona 62.7 5.6 0.00019 26.7 2.9 35 81-115 65-105 (140)
27 3e6m_A MARR family transcripti 62.6 6.9 0.00023 27.0 3.4 36 81-116 82-123 (161)
28 3g3z_A NMB1585, transcriptiona 62.6 8 0.00027 25.9 3.7 34 81-114 60-99 (145)
29 2qvo_A Uncharacterized protein 62.2 4.7 0.00016 25.7 2.3 34 81-114 45-81 (95)
30 3jw4_A Transcriptional regulat 61.9 7 0.00024 26.4 3.3 35 81-115 72-112 (148)
31 3nrv_A Putative transcriptiona 61.3 7 0.00024 26.3 3.2 36 81-116 69-110 (148)
32 2frh_A SARA, staphylococcal ac 61.1 7.8 0.00027 25.9 3.4 35 81-115 68-108 (127)
33 3f3x_A Transcriptional regulat 60.4 5.3 0.00018 26.8 2.5 35 81-115 65-105 (144)
34 3eco_A MEPR; mutlidrug efflux 59.7 6 0.0002 26.3 2.6 35 81-115 62-102 (139)
35 4aik_A Transcriptional regulat 58.5 6.4 0.00022 27.3 2.7 35 81-115 61-101 (151)
36 3kp7_A Transcriptional regulat 57.8 8.7 0.0003 26.0 3.2 35 81-115 66-108 (151)
37 3fm5_A Transcriptional regulat 57.4 7.4 0.00025 26.3 2.8 36 81-116 69-110 (150)
38 2fbh_A Transcriptional regulat 57.4 8.9 0.0003 25.5 3.2 37 81-117 67-109 (146)
39 2hr3_A Probable transcriptiona 57.3 9.2 0.00031 25.6 3.3 36 81-116 65-106 (147)
40 3cdh_A Transcriptional regulat 57.2 10 0.00035 25.7 3.5 36 81-116 72-113 (155)
41 3deu_A Transcriptional regulat 57.1 9.3 0.00032 26.7 3.4 36 81-116 83-124 (166)
42 3bj6_A Transcriptional regulat 55.9 11 0.00036 25.4 3.4 36 81-116 69-110 (152)
43 3s2w_A Transcriptional regulat 55.9 7.4 0.00025 26.7 2.6 36 81-116 79-120 (159)
44 3tgn_A ADC operon repressor AD 55.8 9.4 0.00032 25.5 3.1 38 81-118 66-109 (146)
45 4b8x_A SCO5413, possible MARR- 55.5 7.6 0.00026 26.6 2.6 35 81-115 66-106 (147)
46 3df8_A Possible HXLR family tr 54.9 9.8 0.00033 25.1 3.0 33 81-113 58-92 (111)
47 3k0l_A Repressor protein; heli 54.2 8.1 0.00028 26.6 2.6 36 81-116 75-116 (162)
48 2fa5_A Transcriptional regulat 54.1 10 0.00036 25.8 3.1 36 81-116 78-119 (162)
49 1jgs_A Multiple antibiotic res 54.1 8.5 0.00029 25.4 2.6 38 81-118 63-106 (138)
50 2pg4_A Uncharacterized protein 53.8 4.9 0.00017 25.5 1.3 33 83-115 48-84 (95)
51 3bro_A Transcriptional regulat 53.5 7.5 0.00026 25.8 2.3 35 81-115 65-105 (141)
52 3bja_A Transcriptional regulat 53.2 8.9 0.00031 25.2 2.6 36 81-116 62-103 (139)
53 3tqn_A Transcriptional regulat 52.8 46 0.0016 21.8 6.6 24 81-104 48-72 (113)
54 4hbl_A Transcriptional regulat 52.7 7.4 0.00025 26.4 2.1 35 81-115 70-110 (149)
55 1lj9_A Transcriptional regulat 52.0 9.5 0.00033 25.4 2.6 36 81-116 58-99 (144)
56 2qww_A Transcriptional regulat 51.6 14 0.00049 24.8 3.5 40 81-120 70-117 (154)
57 2fsw_A PG_0823 protein; alpha- 51.6 8.3 0.00028 25.1 2.2 32 81-112 54-91 (107)
58 2pex_A Transcriptional regulat 51.5 11 0.00038 25.4 2.9 38 81-118 76-119 (153)
59 4a5n_A Uncharacterized HTH-typ 51.2 7.1 0.00024 27.1 1.8 33 81-113 55-93 (131)
60 1t98_A KICB protein, chromosom 51.0 7.7 0.00026 30.3 2.1 41 82-122 73-119 (287)
61 2wte_A CSA3; antiviral protein 50.9 14 0.00047 28.2 3.6 37 81-117 181-218 (244)
62 3boq_A Transcriptional regulat 50.9 9.9 0.00034 25.9 2.6 36 81-116 77-118 (160)
63 3euh_A Protein KICB, chromosom 50.8 11 0.00037 31.5 3.1 41 81-121 72-118 (440)
64 1y0u_A Arsenical resistance op 50.8 8.4 0.00029 24.5 2.1 32 81-113 58-89 (96)
65 2rdp_A Putative transcriptiona 50.7 10 0.00035 25.4 2.6 36 81-116 71-112 (150)
66 2gxg_A 146AA long hypothetical 50.0 11 0.00037 25.1 2.6 36 81-116 65-106 (146)
67 1s3j_A YUSO protein; structura 49.8 14 0.00047 24.9 3.2 36 81-116 66-107 (155)
68 1bja_A Transcription regulator 49.8 14 0.00048 24.4 3.0 32 81-113 46-77 (95)
69 3cjn_A Transcriptional regulat 49.4 11 0.00037 25.8 2.6 36 81-116 81-122 (162)
70 3bdd_A Regulatory protein MARR 49.2 11 0.00039 24.8 2.6 34 81-114 60-99 (142)
71 2co5_A Viral protein F93; vira 47.9 18 0.00062 23.7 3.4 34 81-114 45-81 (99)
72 1z91_A Organic hydroperoxide r 47.7 9.6 0.00033 25.5 2.1 38 81-118 69-112 (147)
73 4fx0_A Probable transcriptiona 47.7 14 0.00049 25.3 3.0 33 81-113 67-104 (148)
74 2hzt_A Putative HTH-type trans 47.7 9 0.00031 25.0 1.8 32 81-112 43-80 (107)
75 2nnn_A Probable transcriptiona 47.3 10 0.00034 25.0 2.1 36 81-116 67-108 (140)
76 3bpv_A Transcriptional regulat 47.1 10 0.00035 25.0 2.1 36 81-116 58-99 (138)
77 2fbi_A Probable transcriptiona 47.0 10 0.00035 25.0 2.1 36 81-116 65-106 (142)
78 1yg2_A Gene activator APHA; vi 46.9 63 0.0021 22.8 6.5 35 81-115 38-80 (179)
79 2a61_A Transcriptional regulat 46.2 11 0.00036 25.1 2.1 36 81-116 62-103 (145)
80 3u2r_A Regulatory protein MARR 46.2 10 0.00035 26.2 2.1 36 81-116 77-118 (168)
81 1ub9_A Hypothetical protein PH 46.2 12 0.0004 23.3 2.2 33 81-113 45-83 (100)
82 2eth_A Transcriptional regulat 46.1 13 0.00045 25.2 2.6 37 81-117 73-115 (154)
83 2nyx_A Probable transcriptiona 46.1 13 0.00044 25.8 2.6 36 81-116 74-115 (168)
84 3aaf_A Werner syndrome ATP-dep 45.9 28 0.00094 24.0 4.3 44 58-113 57-105 (134)
85 2bv6_A MGRA, HTH-type transcri 45.6 15 0.00052 24.3 2.8 38 81-118 66-109 (142)
86 3neu_A LIN1836 protein; struct 45.0 66 0.0023 21.4 8.7 61 81-141 52-119 (125)
87 3euk_L Chromosome partition pr 44.7 16 0.00053 28.2 2.9 28 81-108 152-182 (238)
88 3nqo_A MARR-family transcripti 44.2 14 0.00048 26.3 2.6 36 81-116 72-113 (189)
89 2v7f_A RPS19, RPS19E SSU ribos 43.9 21 0.00072 25.3 3.4 31 81-111 96-126 (150)
90 2obp_A Putative DNA-binding pr 43.9 16 0.00055 24.1 2.6 34 81-114 51-88 (96)
91 3euh_C MUKE, chromosome partit 43.7 21 0.00073 27.3 3.6 71 29-109 109-183 (234)
92 3cta_A Riboflavin kinase; stru 42.4 14 0.00049 27.3 2.5 36 81-116 42-80 (230)
93 2f2e_A PA1607; transcription f 42.4 19 0.00065 24.9 3.0 32 81-112 52-88 (146)
94 1z7u_A Hypothetical protein EF 41.3 13 0.00043 24.4 1.8 33 81-113 51-89 (112)
95 2vn2_A DNAD, chromosome replic 39.0 14 0.00047 25.1 1.7 40 81-124 66-105 (128)
96 3by6_A Predicted transcription 38.8 85 0.0029 20.9 6.7 25 81-105 50-75 (126)
97 2fxa_A Protease production reg 38.6 22 0.00075 25.9 2.9 35 81-115 77-117 (207)
98 3l7w_A Putative uncharacterize 37.5 24 0.00081 23.0 2.7 71 15-114 3-81 (108)
99 3bl4_A Uncharacterized protein 36.7 12 0.00041 25.8 1.1 34 14-47 87-124 (124)
100 3f8b_A Transcriptional regulat 36.6 22 0.00076 23.6 2.5 77 13-114 4-89 (116)
101 1yyv_A Putative transcriptiona 36.6 14 0.00048 25.2 1.5 33 81-113 64-102 (131)
102 2cos_A Serine/threonine protei 34.8 17 0.00058 21.6 1.4 21 26-46 25-47 (54)
103 2esh_A Conserved hypothetical 33.5 29 0.00099 22.9 2.7 32 83-114 52-90 (118)
104 1hw1_A FADR, fatty acid metabo 33.3 1.4E+02 0.0046 21.6 6.7 25 81-105 46-71 (239)
105 1okr_A MECI, methicillin resis 33.0 22 0.00076 23.1 2.0 35 81-115 43-81 (123)
106 2fbk_A Transcriptional regulat 32.6 15 0.00053 25.7 1.2 36 81-116 101-142 (181)
107 2heo_A Z-DNA binding protein 1 31.6 33 0.0011 20.4 2.5 25 81-105 40-64 (67)
108 3la7_A Global nitrogen regulat 30.3 33 0.0011 24.9 2.7 47 66-114 194-240 (243)
109 2crn_A Ubash3A protein; compac 30.2 53 0.0018 19.7 3.2 24 22-46 24-47 (64)
110 2hl7_A Cytochrome C-type bioge 30.0 66 0.0023 20.6 3.8 31 17-49 44-74 (84)
111 2dql_A PEX protein; circadian 29.8 34 0.0012 22.7 2.5 73 16-114 17-99 (115)
112 2oqg_A Possible transcriptiona 29.8 26 0.00091 22.3 1.9 31 81-111 49-82 (114)
113 2l9u_A Receptor tyrosine-prote 29.3 30 0.001 18.8 1.7 17 40-56 19-35 (40)
114 1xma_A Predicted transcription 28.9 40 0.0014 23.4 2.8 34 81-114 77-118 (145)
115 4esf_A PADR-like transcription 28.4 42 0.0014 22.3 2.8 69 19-114 10-86 (117)
116 4a17_D L21, RPL11, 60S ribosom 28.4 29 0.00099 25.4 2.1 14 35-48 154-167 (172)
117 1olt_A Oxygen-independent copr 28.3 26 0.00089 28.8 2.0 30 85-115 405-434 (457)
118 3hhh_A Transcriptional regulat 28.0 37 0.0013 22.6 2.5 69 19-114 12-88 (116)
119 2gai_A DNA topoisomerase I; zi 27.7 93 0.0032 27.1 5.5 52 85-137 467-533 (633)
120 3ri2_A Transcriptional regulat 26.8 51 0.0017 22.2 3.0 35 81-115 53-94 (123)
121 2fq3_A Transcription regulator 26.4 23 0.00078 23.8 1.1 52 37-99 49-100 (104)
122 2rkh_A Putative APHA-like tran 26.1 23 0.00077 25.9 1.1 29 86-114 54-89 (180)
123 2kw0_A CCMH protein; oxidoredu 26.0 85 0.0029 20.4 3.8 32 17-50 41-72 (90)
124 1p4x_A Staphylococcal accessor 25.8 31 0.0011 26.2 1.9 34 81-114 189-228 (250)
125 3j21_E 50S ribosomal protein L 25.5 30 0.001 25.7 1.7 14 35-48 166-179 (186)
126 2ekk_A UBA domain from E3 ubiq 25.5 72 0.0025 17.6 3.1 21 22-45 24-44 (47)
127 4esb_A Transcriptional regulat 24.7 39 0.0013 22.4 2.1 74 15-115 3-85 (115)
128 1i7d_A DNA topoisomerase III; 24.5 53 0.0018 28.8 3.4 33 85-118 530-562 (659)
129 3cuo_A Uncharacterized HTH-typ 24.4 48 0.0016 20.3 2.4 31 81-111 53-86 (99)
130 3bwg_A Uncharacterized HTH-typ 23.9 2E+02 0.007 21.1 6.2 23 81-103 44-67 (239)
131 2zfw_A PEX; five alpha-helices 23.9 39 0.0013 23.7 2.0 33 81-113 79-120 (148)
132 2job_A Antilipopolysaccharide 23.8 96 0.0033 20.7 3.8 27 19-46 76-102 (102)
133 1v4r_A Transcriptional repress 23.6 1.2E+02 0.0041 19.0 4.3 21 81-101 50-70 (102)
134 1p4x_A Staphylococcal accessor 23.6 34 0.0012 26.0 1.8 33 81-113 65-103 (250)
135 3elk_A Putative transcriptiona 23.4 32 0.0011 23.0 1.4 81 11-118 4-93 (117)
136 3ic7_A Putative transcriptiona 23.2 1.2E+02 0.0041 20.1 4.4 60 81-140 50-118 (126)
137 2wv0_A YVOA, HTH-type transcri 23.2 2.3E+02 0.0078 20.9 7.1 24 81-104 49-73 (243)
138 1mw9_X DNA topoisomerase I; de 23.0 53 0.0018 28.3 3.0 31 85-116 499-529 (592)
139 3iz5_E 60S ribosomal protein L 22.8 31 0.001 25.5 1.3 16 35-50 156-171 (180)
140 2zkr_d 60S ribosomal protein L 22.4 34 0.0012 25.1 1.5 17 32-48 154-170 (178)
141 1vq8_D 50S ribosomal protein L 22.3 34 0.0012 25.1 1.5 14 35-48 158-171 (177)
142 4ham_A LMO2241 protein; struct 22.3 59 0.002 21.8 2.7 24 81-104 53-77 (134)
143 1xmk_A Double-stranded RNA-spe 22.1 78 0.0027 19.8 3.0 30 82-111 42-73 (79)
144 4ggd_C Mitotic checkpoint seri 21.8 23 0.00078 17.5 0.3 15 102-116 8-22 (26)
145 1hsj_A Fusion protein consisti 21.6 36 0.0012 27.6 1.6 33 81-113 435-473 (487)
146 2qv5_A AGR_C_5032P, uncharacte 21.0 2.6E+02 0.009 21.4 6.4 55 81-136 142-197 (261)
147 3edp_A LIN2111 protein; APC883 20.7 1.6E+02 0.0056 21.6 5.1 24 81-104 48-72 (236)
148 4fp9_B Mterf domain-containing 20.6 1.3E+02 0.0045 23.9 4.8 55 82-145 45-105 (335)
149 4ddu_A Reverse gyrase; topoiso 20.1 1.3E+02 0.0044 27.9 5.1 32 85-116 1024-1055(1104)
No 1
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.96 E-value=7.4e-30 Score=243.31 Aligned_cols=142 Identities=29% Similarity=0.478 Sum_probs=133.3
Q ss_pred ChHHHhhcCCCceeccccHHHHHHHHHHHHhCCcCCHHHHHHHHHhHHHHHHHhhCCCCCCCCCCCChHHHHHHHhhhhH
Q psy9269 1 ERYEKLVEGREPVESSLHRHLVEHLNSEIVLKTISDVSVAVEWLRSTFFFVRVLSNPGHYGFPAGLSSEELQSRLQGKNS 80 (148)
Q Consensus 1 ~~Y~~ll~~~~pIES~L~~~L~~~lnaeIa~g~i~s~~~~~~wl~~TFly~Rl~~nP~~Yg~~~~~~~~~~~~~l~~~~~ 80 (148)
++|++++++++||||+|+..+.+|+|+||++|+|.+++++++|+++||||+|+.+||.+|+++ +.+...++..++
T Consensus 1311 ~~~~~ll~~~~pveS~L~~~l~~~l~~eI~~~~i~~~~d~~~~l~~Tfl~~r~~~nP~~y~l~-~~~~~~~~~~l~---- 1385 (1724)
T 4f92_B 1311 DFFKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQ-GISHRHLSDHLS---- 1385 (1724)
T ss_dssp HHHHHHTTSCBCCCCCGGGSCHHHHHHHHHTTSCCBHHHHHHHHTTSSHHHHHHHSGGGTTCS-CCSHHHHHHHHH----
T ss_pred HHHHHHhCCCCceeeecccchHHHHHHHHHhcccCCHHHHHHHHHhhHHHHHHhcCccccccc-ccchhhHHHHHH----
Confidence 369999999999999999999999999999999999999999999999999999999999997 456777777777
Q ss_pred hHHHHHHHHhhhCCceeecCCCccccChhhHHHHhcCCCHHHHHhc----cCCCCHHHHHHhhhCCCCCCC
Q psy9269 81 GLCMRELNGLSRYNLITMNDGFDILPTVTGSIMAKFCIGFNTMVAF----TGWEKAQKDLALLTTLPLATS 147 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~~~i~~T~lG~i~S~~YI~~~T~~~~----~~~~s~~~lL~ll~~s~e~~~ 147 (148)
++|+++++.|+++|||+.++++.+.||++|++||+|||+|.||+.| .+.++..++|++||.++||..
T Consensus 1386 ~lv~~~l~~L~~~~~I~~~~~~~l~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~L~il~~a~ef~~ 1456 (1724)
T 4f92_B 1386 ELVEQTLSDLEQSKCISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYEN 1456 (1724)
T ss_dssp HHHHHHHHHHHHTTSEEEETTTEEEECHHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHHHHHHHTSGGGTT
T ss_pred HHHHHHHHHHHHCCCEEEcCCCCEeecHHHHHHHHHCCCHHHHHHHHHhccccCCHHHHHHHhcCCccccc
Confidence 9999999999999999998878899999999999999999999999 677899999999999999964
No 2
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.95 E-value=1.7e-28 Score=234.08 Aligned_cols=145 Identities=21% Similarity=0.334 Sum_probs=130.1
Q ss_pred ChHHHhhcCCCceeccccHHHHHHHHHHHHhCCcCCHHHHHHHHHhHHHHHHHhhCCCCCCCCCCCChHHHHHHHhhhhH
Q psy9269 1 ERYEKLVEGREPVESSLHRHLVEHLNSEIVLKTISDVSVAVEWLRSTFFFVRVLSNPGHYGFPAGLSSEELQSRLQGKNS 80 (148)
Q Consensus 1 ~~Y~~ll~~~~pIES~L~~~L~~~lnaeIa~g~i~s~~~~~~wl~~TFly~Rl~~nP~~Yg~~~~~~~~~~~~~l~~~~~ 80 (148)
++|.++++++.||||+|+.++.+|+||||++|+|++.+|+++||++||+|+|+.+||.+||+..+ ...-++.+..++.
T Consensus 476 ~~~~~ll~~~~pieS~l~~~l~d~L~aeI~~g~i~~~~~a~~~l~~T~~~~r~~~~p~~y~~~~~--~~~~d~~l~~~~~ 553 (1724)
T 4f92_B 476 QYYLSLLNQQLPIESQMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHD--DLKGDPLLDQRRL 553 (1724)
T ss_dssp CHHHHHTTTCSCCCCCTTTTHHHHHHHHHHHTSCCBHHHHHHHHHHSHHHHHHHHCTTTTTCCHH--HHHHCTTCHHHHH
T ss_pred HHHHHHHcCCCcchhhccccHHHHHHHHHHHhhcCCHHHHHHHHhccHHHHHhhhChhhhccCcc--ccccchHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999998632 1111234555566
Q ss_pred hHHHHHHHHhhhCCceeecCC-CccccChhhHHHHhcCCCHHHHHhc----cCCCCHHHHHHhhhCCCCCCC
Q psy9269 81 GLCMRELNGLSRYNLITMNDG-FDILPTVTGSIMAKFCIGFNTMVAF----TGWEKAQKDLALLTTLPLATS 147 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~-~~i~~T~lG~i~S~~YI~~~T~~~~----~~~~s~~~lL~ll~~s~e~~~ 147 (148)
++|+.++..|.++|||.++++ +.+.||++||+||+|||+|.||..| ++.+++.++|++||.++||..
T Consensus 554 ~~i~~~~~~L~~~~li~~d~~~~~~~~T~lGr~~s~~yi~~~t~~~~~~~l~~~~~~~~ll~~is~s~ef~~ 625 (1724)
T 4f92_B 554 DLVHTAALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSLSSEFKN 625 (1724)
T ss_dssp HHHHHHHHHHHHTTSEEECTTTCBEEECHHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHHHHHHHTCGGGTT
T ss_pred HHHHHHHHHHHHCCCeeeecCCCccccchHHHHHHHhcCCHHHHHHHHhhcCCCCCHHHHHHHHhCChhhcc
Confidence 999999999999999999876 7899999999999999999999999 677999999999999999964
No 3
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.74 E-value=1.3e-17 Score=146.90 Aligned_cols=121 Identities=21% Similarity=0.211 Sum_probs=104.8
Q ss_pred HHHhh-cCCCceeccccH--HHHHHHHHHHHhCCcCCHHHHHHHHHhHHHHHHHhhCCCCCCCCCCCChHHHHHHHhhhh
Q psy9269 3 YEKLV-EGREPVESSLHR--HLVEHLNSEIVLKTISDVSVAVEWLRSTFFFVRVLSNPGHYGFPAGLSSEELQSRLQGKN 79 (148)
Q Consensus 3 Y~~ll-~~~~pIES~L~~--~L~~~lnaeIa~g~i~s~~~~~~wl~~TFly~Rl~~nP~~Yg~~~~~~~~~~~~~l~~~~ 79 (148)
|++++ +.|+|+||+|.. .|.+|++++|+.|++.+.+|+.+|+.+||+|+|+. .| +.
T Consensus 394 ~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~t~~~~~~~-~~-----------------~~--- 452 (702)
T 2p6r_A 394 VKRYIFGEPERITSKLGVETHLRFHSLSIICDGYAKTLEELEDFFADTFFFKQNE-IS-----------------LS--- 452 (702)
T ss_dssp HHTTTSSCCCCCCCCCCSHHHHHHHHHHHHHHTSCSSHHHHHHHHHTSTTHHHHC-CC-----------------CH---
T ss_pred HHHHhcCCCCCceeecCcchhHHHHHHHHHHcCCCCCHHHHHHHHHhhhHHHhhh-HH-----------------HH---
Confidence 33454 689999999985 89999999999999999999999999999999764 11 12
Q ss_pred HhHHHHHHHHhhhCCceeecCCCccccChhhHHHHhcCCCHHHHHhc----cCC-CCHHHHHHhhhCCCCCCC
Q psy9269 80 SGLCMRELNGLSRYNLITMNDGFDILPTVTGSIMAKFCIGFNTMVAF----TGW-EKAQKDLALLTTLPLATS 147 (148)
Q Consensus 80 ~~~v~~~l~~L~~~~lI~~~~~~~i~~T~lG~i~S~~YI~~~T~~~~----~~~-~s~~~lL~ll~~s~e~~~ 147 (148)
+.++++++.|.+.|+|..+ +.+.+|++|++||+|||+|.|+++| ... .+..++|++||+++||.+
T Consensus 453 -~~~~~al~~L~~~g~i~~~--~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~~ 522 (702)
T 2p6r_A 453 -YELERVVRQLENWGMVVEA--AHLAPTKLGSLVSRLYIDPLTGFIFHDVLSRMELSDIGALHLICRTPDMER 522 (702)
T ss_dssp -HHHHHHHHHHHHTTSEEES--SSEEECHHHHHHHHTTCCHHHHHHHHHHTTTCCCCHHHHHHHHHHSTTSCC
T ss_pred -HHHHHHHHHHHHCcCeeEC--CeeccChHHHHHHHHhCCHHHHHHHHHHhhcccCCHHHHHHHhhCCccccc
Confidence 6788999999999999976 4699999999999999999999999 332 678899999999999853
No 4
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.73 E-value=2.8e-17 Score=145.14 Aligned_cols=125 Identities=19% Similarity=0.124 Sum_probs=107.0
Q ss_pred HHHhh-cCCCceeccccH--HHHHHHHHHHHhCCcCCHHHHHHHHHhHHHHHHHhhCCCCCCCCCCCChHHHHHHHhhhh
Q psy9269 3 YEKLV-EGREPVESSLHR--HLVEHLNSEIVLKTISDVSVAVEWLRSTFFFVRVLSNPGHYGFPAGLSSEELQSRLQGKN 79 (148)
Q Consensus 3 Y~~ll-~~~~pIES~L~~--~L~~~lnaeIa~g~i~s~~~~~~wl~~TFly~Rl~~nP~~Yg~~~~~~~~~~~~~l~~~~ 79 (148)
|++++ ++++|+||++.. .|++|++++|+.|++.+.+|+.+|+.+||+|+|+. . +..+.
T Consensus 393 ~~~~~~~~~~~i~s~l~~~~~l~~~ll~~i~~~~~~~~~d~~~~l~~~~~~~~~~---~-------------~~~~~--- 453 (720)
T 2zj8_A 393 MNHYIFGKPEKLFSQLSNESNLRSQVLALIATFGYSTVEEILKFISNTFYAYQRK---D-------------TYSLE--- 453 (720)
T ss_dssp HHHHTTSCCCCCCCCTTCHHHHHHHHHHHHHHSCCCSHHHHHHHHHTSHHHHHCS---C-------------CHHHH---
T ss_pred HHHHhcCCCCCcEeecCchhhHHHHHHHHHHhCCCCCHHHHHHHHHhChHHHhcc---c-------------hHHHH---
Confidence 44555 688999999985 89999999999999999999999999999998652 1 13355
Q ss_pred HhHHHHHHHHhhhCCceeecCCCccccChhhHHHHhcCCCHHHHHhc----cC---CCCHHHHHHhhhCCCCCCC
Q psy9269 80 SGLCMRELNGLSRYNLITMNDGFDILPTVTGSIMAKFCIGFNTMVAF----TG---WEKAQKDLALLTTLPLATS 147 (148)
Q Consensus 80 ~~~v~~~l~~L~~~~lI~~~~~~~i~~T~lG~i~S~~YI~~~T~~~~----~~---~~s~~~lL~ll~~s~e~~~ 147 (148)
+.++++++.|.+.|+|..+.++.+.+|++|++||+|||+|.|++.| .. ..+..++|+++|+++||.+
T Consensus 454 -~~~~~~l~~L~~~~~i~~~~~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~e~~~ 527 (720)
T 2zj8_A 454 -EKIRNILYFLLENEFIEISLEDKIRPLSLGIRTAKLYIDPYTAKMFKDKMEEVVKDPNPIGIFHLISLTPDITP 527 (720)
T ss_dssp -HHHHHHHHHHHHTTSEEECTTSCEEECHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHTSTTCCC
T ss_pred -HHHHHHHHHHHHCCCeeECCCCcEeeChHHHHHHHHcCCHHHHHHHHHHHHhhccCCCHHHHHHHhccCccccc
Confidence 7899999999999999954446799999999999999999999999 22 3788999999999999853
No 5
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.69 E-value=5e-17 Score=143.14 Aligned_cols=119 Identities=18% Similarity=0.112 Sum_probs=104.0
Q ss_pred HHHhh-cCCCceeccccH--HHHHHHHHHHHhCCcCCHHHHHHHHHhHHHHHHHhhCCCCCCCCCCCChHHHHHHHhhhh
Q psy9269 3 YEKLV-EGREPVESSLHR--HLVEHLNSEIVLKTISDVSVAVEWLRSTFFFVRVLSNPGHYGFPAGLSSEELQSRLQGKN 79 (148)
Q Consensus 3 Y~~ll-~~~~pIES~L~~--~L~~~lnaeIa~g~i~s~~~~~~wl~~TFly~Rl~~nP~~Yg~~~~~~~~~~~~~l~~~~ 79 (148)
|++++ +.|+|++|+|.. .|.+|++++++.|++.+.+|+.+|+.+||+|+|...
T Consensus 415 ~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~~~~~~~~~~------------------------ 470 (715)
T 2va8_A 415 FKKYVLSDVEPIESKLGSERAFYTFLLGILSAEGNLSEKQLENFAYESLLAKQLVD------------------------ 470 (715)
T ss_dssp HHHTTSSCCCCCCCSCCSHHHHHHHHHHHHHHHCSEEHHHHHHHHTTSSSCHHHHH------------------------
T ss_pred HHHHHcCCCCCceecCCchhHHHHHHHHHHhccccCCHHHHHHHHHhhHHHhhcch------------------------
Confidence 44555 689999999985 899999999999999999999999999999986431
Q ss_pred HhHHHHHHHHhhhCCceeecCCCccccChhhHHHHhcCCCHHHHHhc----cC--CCCHHHHHHhhhCCCCCCC
Q psy9269 80 SGLCMRELNGLSRYNLITMNDGFDILPTVTGSIMAKFCIGFNTMVAF----TG--WEKAQKDLALLTTLPLATS 147 (148)
Q Consensus 80 ~~~v~~~l~~L~~~~lI~~~~~~~i~~T~lG~i~S~~YI~~~T~~~~----~~--~~s~~~lL~ll~~s~e~~~ 147 (148)
.-++.+++.|.+.|+|..++ +.+.+|++|++||++||+|.|+++| .. ..+..++|++||.++||.+
T Consensus 471 -~~~~~al~~L~~~g~i~~~~-~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~~ 542 (715)
T 2va8_A 471 -VYFDRAIRWLLEHSFIKEEG-NTFALTNFGKRVADLYINPFTADIIRKGLEGHKASCELAYLHLLAFTPDGPL 542 (715)
T ss_dssp -HHHHHHHHHHHHTTSEEECS-SEEEECHHHHHHHHHTCCHHHHHHHHHHHHHSCCCCHHHHHHHHHHSTTSCC
T ss_pred -HHHHHHHHHHHHCcCEeecC-CeEeeChHHHHHHHHcCCHhHHHHHHHHhhhccCCCHHHHHHHhhcCccccc
Confidence 23778999999999999765 6799999999999999999999999 22 4789999999999999854
No 6
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=98.93 E-value=1.6e-10 Score=94.01 Aligned_cols=48 Identities=21% Similarity=0.176 Sum_probs=44.2
Q ss_pred CCCccccChhhHHHHhcCCCHHHHHhc----cCCCCHHHHHHhhhCCCCCCC
Q psy9269 100 DGFDILPTVTGSIMAKFCIGFNTMVAF----TGWEKAQKDLALLTTLPLATS 147 (148)
Q Consensus 100 ~~~~i~~T~lG~i~S~~YI~~~T~~~~----~~~~s~~~lL~ll~~s~e~~~ 147 (148)
+++.+.||++|+|||+|||+|.||..| ++.++..++|++||.++||..
T Consensus 5 ~~~~l~~t~lG~iaS~yYi~~~T~~~f~~~l~~~~~~~~lL~ils~a~Ef~~ 56 (328)
T 3im1_A 5 ATEIISTLSNGLIASHYGVSFFTIQSFVSSLSNTSTLKNMLYVLSTAVEFES 56 (328)
T ss_dssp CCCCCTTSSSCBCCCCCCCCHHHHHHHHHHCCTTCCHHHHHHHHHTCGGGGG
T ss_pred CCCCccCCchhHHHHHHCCCHHHHHHHHHHhcccCCHHHHHHHhccHHHHHh
Confidence 446799999999999999999999999 678999999999999999963
No 7
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=98.88 E-value=3.9e-10 Score=92.20 Aligned_cols=46 Identities=20% Similarity=0.333 Sum_probs=16.8
Q ss_pred CccccChhhHHHHhcCCCHHHHHhc----cCCCCHHHHHHhhhCCCCCCC
Q psy9269 102 FDILPTVTGSIMAKFCIGFNTMVAF----TGWEKAQKDLALLTTLPLATS 147 (148)
Q Consensus 102 ~~i~~T~lG~i~S~~YI~~~T~~~~----~~~~s~~~lL~ll~~s~e~~~ 147 (148)
|.+.||++|+|||+|||++.||+.| ++.++..++|++||.++||..
T Consensus 11 g~l~~t~lGriaS~yYi~~~T~~~f~~~l~~~~~~~~lL~ils~a~EF~~ 60 (339)
T 2q0z_X 11 MDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYEN 60 (339)
T ss_dssp --------------------------------CCHHHHHHHHHTSGGGTT
T ss_pred ceeccCcHHHHHHHHCCCHHHHHHHHHHhcccCCHHHHHHHHhchHHHhc
Confidence 7899999999999999999999999 667999999999999999964
No 8
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=95.68 E-value=0.013 Score=52.54 Aligned_cols=59 Identities=19% Similarity=0.171 Sum_probs=45.3
Q ss_pred hHHHHHHHHhhhCCceeecCCCccccChhhHHHHhcCCCHHHHHhc---cCCCCHHHHHHhhhCCC
Q psy9269 81 GLCMRELNGLSRYNLITMNDGFDILPTVTGSIMAKFCIGFNTMVAF---TGWEKAQKDLALLTTLP 143 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~~~i~~T~lG~i~S~~YI~~~T~~~~---~~~~s~~~lL~ll~~s~ 143 (148)
+.+..++..|.+.|+|..+ | .+|++|++||+++++|..++++ ........++.++|..+
T Consensus 489 ~~i~~a~~~L~~lgald~~--~--~lT~lG~~~a~~pl~p~~~~~l~~~~~~~c~~~~l~i~a~ls 550 (773)
T 2xau_A 489 ETMMRALEELNYLACLDDE--G--NLTPLGRLASQFPLDPMLAVMLIGSFEFQCSQEILTIVAMLS 550 (773)
T ss_dssp HHHHHHHHHHHHTTSBCTT--S--CBCHHHHHHTTSSSCHHHHHHHHHGGGGTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCcccC--C--CcChhhhhhccccCCHHHHHHHHhhcccCchhHHHHHHHhcc
Confidence 5678899999999999532 3 4899999999999999999998 22234566666666543
No 9
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=90.33 E-value=0.051 Score=33.25 Aligned_cols=48 Identities=15% Similarity=0.200 Sum_probs=35.0
Q ss_pred CHHHHHHHHHhHHHHHHHhhCCCCCCCCCCCChHHHHHHHhhhhHhHHHHHHHHhhhCCceeec
Q psy9269 36 DVSVAVEWLRSTFFFVRVLSNPGHYGFPAGLSSEELQSRLQGKNSGLCMRELNGLSRYNLITMN 99 (148)
Q Consensus 36 s~~~~~~wl~~TFly~Rl~~nP~~Yg~~~~~~~~~~~~~l~~~~~~~v~~~l~~L~~~~lI~~~ 99 (148)
+.++++++++++=-++++..--..||+.. +.|-.+|+.|++.|+|..+
T Consensus 11 ~e~~lL~yIr~sGGildI~~~a~kygV~k----------------deV~~~LrrLe~KGLI~le 58 (59)
T 2xvc_A 11 TERELLDYIVNNGGFLDIEHFSKVYGVEK----------------QEVVKLLEALKNKGLIAVE 58 (59)
T ss_dssp CHHHHHHHHHHTTSEEEHHHHHHHHCCCH----------------HHHHHHHHHHHHTTSEEEE
T ss_pred cHHHHHHHHHHcCCEEeHHHHHHHhCCCH----------------HHHHHHHHHHHHCCCeecc
Confidence 56677777777755555555555677763 6778899999999999865
No 10
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}
Probab=82.73 E-value=1.8 Score=33.79 Aligned_cols=42 Identities=17% Similarity=0.066 Sum_probs=35.8
Q ss_pred hHHHHHHHHhhhCCceeecCCCccccChhhHHHHhcCCCHHHHHhc
Q psy9269 81 GLCMRELNGLSRYNLITMNDGFDILPTVTGSIMAKFCIGFNTMVAF 126 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~~~i~~T~lG~i~S~~YI~~~T~~~~ 126 (148)
+-+..++..|...|.+..+ | ..|++|+.|+++=++|.-.+++
T Consensus 18 ~~l~~A~~~L~~LgAld~~--g--~lT~lG~~ma~lPl~P~lakmL 59 (270)
T 3i4u_A 18 ETLITAMEQLYTLGALDDE--G--LLTRLGRRMAEFPLEPMLCKML 59 (270)
T ss_dssp HHHHHHHHHHHHHTSBCTT--S--CBCHHHHHHTTSCSCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcCCC--C--CccHHHHHHHhCCCCHHHHHHH
Confidence 4567899999999998632 3 5899999999999999999988
No 11
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=80.28 E-value=1.6 Score=28.68 Aligned_cols=33 Identities=18% Similarity=0.168 Sum_probs=28.0
Q ss_pred hHHHHHHHHhhhCCceeecCCCccccChhhHHHH
Q psy9269 81 GLCMRELNGLSRYNLITMNDGFDILPTVTGSIMA 114 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~~~i~~T~lG~i~S 114 (148)
..+...++.|++.|+|+... +.+..|+-|+-.-
T Consensus 35 ~~~~~~l~~L~~~GLI~~~~-~~~~LT~kG~~~l 67 (95)
T 1r7j_A 35 ALTGRYIKMLMDLEIIRQEG-KQYMLTKKGEELL 67 (95)
T ss_dssp HHHHHHHHHHHHTTSEEEET-TEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHCCCeEEEC-CeeEEChhHHHHH
Confidence 56778899999999999887 5699999998653
No 12
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=77.76 E-value=2 Score=32.09 Aligned_cols=49 Identities=14% Similarity=0.083 Sum_probs=35.6
Q ss_pred ChHHHHHHHhhhhHhHHHHHHHHhhhCCceeecCCCccccChhhHHHHhc
Q psy9269 67 SSEELQSRLQGKNSGLCMRELNGLSRYNLITMNDGFDILPTVTGSIMAKF 116 (148)
Q Consensus 67 ~~~~~~~~l~~~~~~~v~~~l~~L~~~~lI~~~~~~~i~~T~lG~i~S~~ 116 (148)
+...+...+... ..-+..+++.|++.|+|....++.+..|+-|+-....
T Consensus 22 ~~~~lA~~l~vs-~~tvs~~l~~Le~~GlV~r~~~~~i~LT~~G~~~~~~ 70 (214)
T 3hrs_A 22 TNKEIAQLMQVS-PPAVTEMMKKLLAEELLIKDKKAGYLLTDLGLKLVSD 70 (214)
T ss_dssp CHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEETTTEEEECHHHHHHHHH
T ss_pred CHHHHHHHHCCC-hhHHHHHHHHHHHCCCEEEecCCCeEECHHHHHHHHH
Confidence 344444444322 2457789999999999999887779999999977643
No 13
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=77.44 E-value=2.3 Score=29.00 Aligned_cols=36 Identities=11% Similarity=0.122 Sum_probs=29.9
Q ss_pred hHHHHHHHHhhhCCceeecCCCccccChhhHHHHhc
Q psy9269 81 GLCMRELNGLSRYNLITMNDGFDILPTVTGSIMAKF 116 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~~~i~~T~lG~i~S~~ 116 (148)
.-|...++.|++.|+|....++.+..|+-|+....-
T Consensus 37 ~tvs~~l~~Le~~Glv~r~~~~~~~LT~~g~~~~~~ 72 (142)
T 1on2_A 37 SSVTKMVQKLDKDEYLIYEKYRGLVLTSKGKKIGKR 72 (142)
T ss_dssp HHHHHHHHHHHHTTSEEEETTTEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEeeCceEEEchhHHHHHHH
Confidence 456788999999999998876679999999877654
No 14
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=76.70 E-value=2.2 Score=32.21 Aligned_cols=34 Identities=21% Similarity=0.238 Sum_probs=28.1
Q ss_pred hHHHHHHHHhhhCCceeecCCCccccChhhHHHHh
Q psy9269 81 GLCMRELNGLSRYNLITMNDGFDILPTVTGSIMAK 115 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~~~i~~T~lG~i~S~ 115 (148)
.-|...++.|.+.|+|+.++ +.+..|+-|+..+.
T Consensus 45 ~SV~~~lkkL~e~GLV~~~~-~Gv~LTe~G~~~A~ 78 (200)
T 2p8t_A 45 GSVRTLLRKLSHLDIIRSKQ-RGHFLTLKGKEIRD 78 (200)
T ss_dssp HHHHHHHHHHHHTTSEEEC---CEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEeC-CCeEECHHHHHHHH
Confidence 56778999999999999998 78999999996653
No 15
>3iz6_S 40S ribosomal protein S19 (S19E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=75.82 E-value=2.1 Score=30.76 Aligned_cols=32 Identities=19% Similarity=0.192 Sum_probs=26.8
Q ss_pred hHHHHHHHHhhhCCceeecCCCccccChhhHH
Q psy9269 81 GLCMRELNGLSRYNLITMNDGFDILPTVTGSI 112 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~~~i~~T~lG~i 112 (148)
.++..+|.+|++.|+|+.++++.=..|+-|+-
T Consensus 101 ~iiR~~LQqLE~~g~Vek~~~gGR~lT~~G~~ 132 (146)
T 3iz6_S 101 AISRNILQQLQKMGIIDVDPKGGRLITSQGRR 132 (146)
T ss_dssp HHHHHHHHHHHHHTSEEEETTTEEEECHHHHH
T ss_pred HHHHHHHHHHHHCCCeEecCCCCcEECHhHHH
Confidence 78899999999999999987655677787763
No 16
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=73.70 E-value=3.3 Score=30.99 Aligned_cols=38 Identities=16% Similarity=0.199 Sum_probs=31.1
Q ss_pred hHHHHHHHHhhhCCceeecCCCccccChhhHHHHhcCC
Q psy9269 81 GLCMRELNGLSRYNLITMNDGFDILPTVTGSIMAKFCI 118 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~~~i~~T~lG~i~S~~YI 118 (148)
.-+..+++.|++.|+|....+..+..|+-|+....-..
T Consensus 39 ~tvs~~l~~Le~~GlV~r~~~~~v~LT~~G~~~~~~~~ 76 (226)
T 2qq9_A 39 PTVSQTVARMERDGLVVVASDRSLQMTPTGRTLATAVM 76 (226)
T ss_dssp HHHHHHHHHHHHTTSEEECTTSBEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEeCCCCeEECHHHHHHHHHHH
Confidence 45677899999999999988767999999988765443
No 17
>3u5c_T 40S ribosomal protein S19-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_S 3o30_M 3o2z_M 3u5g_T 3jyv_T*
Probab=73.48 E-value=3.2 Score=29.74 Aligned_cols=32 Identities=9% Similarity=0.126 Sum_probs=26.5
Q ss_pred hHHHHHHHHhhhCCceeecCCCccccChhhHH
Q psy9269 81 GLCMRELNGLSRYNLITMNDGFDILPTVTGSI 112 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~~~i~~T~lG~i 112 (148)
.++..+|.+|++.|+|+.++++.=..|+-|+-
T Consensus 99 ~iiR~~LQqLE~~g~vek~~~~GR~lT~~G~~ 130 (144)
T 3u5c_T 99 SINRKVLQALEKIGIVEISPKGGRRISENGQR 130 (144)
T ss_dssp HHHHHHHHHHHHTTSEECCSSSSCEECHHHHH
T ss_pred HHHHHHHHHHHHCCCeeecCCCCcEECHhHHH
Confidence 78899999999999999887545667777763
No 18
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=72.90 E-value=16 Score=24.97 Aligned_cols=35 Identities=23% Similarity=0.233 Sum_probs=28.7
Q ss_pred hHHHHHHHHhhhCCceeecCCCccccChhhHHHHh
Q psy9269 81 GLCMRELNGLSRYNLITMNDGFDILPTVTGSIMAK 115 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~~~i~~T~lG~i~S~ 115 (148)
.-|..+++.|++.|+|....+..+..|+.|+....
T Consensus 69 ~tvs~~l~~Le~~Glv~r~~~~~~~lT~~g~~~~~ 103 (155)
T 2h09_A 69 PTVAKMLKRLATMGLIEMIPWRGVFLTAEGEKLAQ 103 (155)
T ss_dssp HHHHHHHHHHHHTTCEEEETTTEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEecCCceEEChhHHHHHH
Confidence 45778999999999999876556899999986643
No 19
>2xzm_T RPS19E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_T
Probab=69.43 E-value=4.7 Score=29.22 Aligned_cols=32 Identities=16% Similarity=0.157 Sum_probs=25.8
Q ss_pred hHHHHHHHHhhhCCceeecCCC-----ccccChhhHH
Q psy9269 81 GLCMRELNGLSRYNLITMNDGF-----DILPTVTGSI 112 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~~-----~i~~T~lG~i 112 (148)
.++..+|.+|++.|+|+.+++| .=..|+-|+-
T Consensus 102 ~iiR~~LQqLE~~g~Vek~~~g~~~k~GR~lT~~G~~ 138 (155)
T 2xzm_T 102 KILRWALKSLEDLKIIRKDKNSATKKFSRVITKEGMT 138 (155)
T ss_dssp HHHHHHHHHHHHTTSEEECSSCSSSTTCEEECHHHHH
T ss_pred HHHHHHHHHHHHCCCEeecCCCCcCCCCCEECHHHHH
Confidence 7889999999999999987654 4567777763
No 20
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=67.66 E-value=2.9 Score=26.72 Aligned_cols=34 Identities=12% Similarity=0.076 Sum_probs=27.0
Q ss_pred hHHHHHHHHhhhCCceeecCC---CccccChhhHHHH
Q psy9269 81 GLCMRELNGLSRYNLITMNDG---FDILPTVTGSIMA 114 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~---~~i~~T~lG~i~S 114 (148)
.-+...++.|++.|+|....+ ..+.+|+-|+..-
T Consensus 41 ~tvs~~l~~Le~~gli~r~~~~r~~~~~LT~~G~~~~ 77 (99)
T 1tbx_A 41 ATFYDAKKFLIQEGFVKERQERGEKRLYLTEKGKLFA 77 (99)
T ss_dssp HHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEEecCCceEEEECHHHHHHH
Confidence 466788999999999987533 4588999998764
No 21
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=66.94 E-value=5.3 Score=26.88 Aligned_cols=35 Identities=14% Similarity=0.221 Sum_probs=29.3
Q ss_pred hHHHHHHHHhhhCCceeecCCCccccChhhHHHHhc
Q psy9269 81 GLCMRELNGLSRYNLITMNDGFDILPTVTGSIMAKF 116 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~~~i~~T~lG~i~S~~ 116 (148)
.-|...++.|++.|+|.... +.+..|+.|+....-
T Consensus 46 ~tv~~~l~~Le~~Gli~r~~-~~~~Lt~~g~~~~~~ 80 (139)
T 2x4h_A 46 SSVFEEVSHLEEKGLVKKKE-DGVWITNNGTRSINY 80 (139)
T ss_dssp HHHHHHHHHHHHTTSEEEET-TEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEecC-CeEEEChhHHHHHHH
Confidence 56778899999999999887 679999999876543
No 22
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=66.50 E-value=5.8 Score=29.61 Aligned_cols=35 Identities=14% Similarity=0.159 Sum_probs=30.0
Q ss_pred hHHHHHHHHhhhCCceeecCCCccccChhhHHHHh
Q psy9269 81 GLCMRELNGLSRYNLITMNDGFDILPTVTGSIMAK 115 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~~~i~~T~lG~i~S~ 115 (148)
.-+..+++.|++.|+|+...+..+..|+.|+-...
T Consensus 39 ~tvs~~l~~Le~~GlV~r~~~~~v~LT~~G~~~~~ 73 (230)
T 1fx7_A 39 PTVSQTVSRMERDGLLRVAGDRHLELTEKGRALAI 73 (230)
T ss_dssp HHHHHHHHHHHHTTSEEECTTSCEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEeCCccEEECHHHHHHHH
Confidence 45778999999999999988767999999988754
No 23
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=65.32 E-value=5.6 Score=26.92 Aligned_cols=32 Identities=19% Similarity=0.095 Sum_probs=26.4
Q ss_pred hHHHHHHHHhhhCCceeecCCCccccChhhHH
Q psy9269 81 GLCMRELNGLSRYNLITMNDGFDILPTVTGSI 112 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~~~i~~T~lG~i 112 (148)
.-|.+-++.|++.|+|+..+.+.+..|+-|+-
T Consensus 44 ~aVs~rL~~Le~~GLV~~~~rg~Y~LT~~G~~ 75 (111)
T 3b73_A 44 SSVSRRLKKLADHDLLQPLANGVYVITEEGEA 75 (111)
T ss_dssp HHHHHHHHHHHHTTSEEECSTTCEEECHHHHH
T ss_pred HHHHHHHHHHHHCCCEEecCCceEEECchHHH
Confidence 56778888999999999765577889999963
No 24
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=63.25 E-value=7 Score=26.17 Aligned_cols=36 Identities=19% Similarity=-0.023 Sum_probs=28.3
Q ss_pred hHHHHHHHHhhhCCceeecCC------CccccChhhHHHHhc
Q psy9269 81 GLCMRELNGLSRYNLITMNDG------FDILPTVTGSIMAKF 116 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~------~~i~~T~lG~i~S~~ 116 (148)
.-+...++.|++.|+|+...+ -.+..|+-|+.+..-
T Consensus 66 ~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~ 107 (143)
T 3oop_A 66 PTVNRIVDVLLRKELIVREISTEDRRISLLSLTDKGRKETTE 107 (143)
T ss_dssp HHHHHHHHHHHHTTSEEEEC----CCSCEEEECHHHHHHHHH
T ss_pred hhHHHHHHHHHHCCCeeccCCCccCceeeeeECHHHHHHHHH
Confidence 556789999999999997653 348899999987643
No 25
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=62.90 E-value=5.8 Score=26.61 Aligned_cols=36 Identities=22% Similarity=0.330 Sum_probs=26.7
Q ss_pred hHHHHHHHHhhhCCceeecCC------CccccChhhHHHHhc
Q psy9269 81 GLCMRELNGLSRYNLITMNDG------FDILPTVTGSIMAKF 116 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~------~~i~~T~lG~i~S~~ 116 (148)
.-+...++.|++.|+|+...+ -.+..|+-|+....-
T Consensus 66 ~tvs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~ 107 (142)
T 3ech_A 66 ALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIHLH 107 (142)
T ss_dssp CHHHHHHHHHHHTTSEEC----------CCEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEeeccCCCCCCeeeeEECHHHHHHHHH
Confidence 567789999999999997653 248899999977543
No 26
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=62.69 E-value=5.6 Score=26.74 Aligned_cols=35 Identities=17% Similarity=0.213 Sum_probs=27.5
Q ss_pred hHHHHHHHHhhhCCceeecCC------CccccChhhHHHHh
Q psy9269 81 GLCMRELNGLSRYNLITMNDG------FDILPTVTGSIMAK 115 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~------~~i~~T~lG~i~S~ 115 (148)
.-+...++.|++.|+|+...+ -.+..|+-|+-...
T Consensus 65 ~tvs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~ 105 (140)
T 3hsr_A 65 GTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIKS 105 (140)
T ss_dssp HHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHTHH
T ss_pred hhHHHHHHHHHHCCCeEecCCCCCcceeeeeEChHHHHHHH
Confidence 567789999999999997653 25889999986543
No 27
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=62.62 E-value=6.9 Score=26.95 Aligned_cols=36 Identities=14% Similarity=0.026 Sum_probs=28.4
Q ss_pred hHHHHHHHHhhhCCceeecCC------CccccChhhHHHHhc
Q psy9269 81 GLCMRELNGLSRYNLITMNDG------FDILPTVTGSIMAKF 116 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~------~~i~~T~lG~i~S~~ 116 (148)
.-+...++.|++.|+|+...+ -.+..|+-|+.+..-
T Consensus 82 ~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~ 123 (161)
T 3e6m_A 82 STTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKKLAE 123 (161)
T ss_dssp HHHHHHHHHHHHTTSEEECC---CCCSCEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEeeCCcccCCeeEeeECHHHHHHHHH
Confidence 467789999999999997654 248999999977653
No 28
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=62.55 E-value=8 Score=25.94 Aligned_cols=34 Identities=24% Similarity=0.136 Sum_probs=27.6
Q ss_pred hHHHHHHHHhhhCCceeecCC------CccccChhhHHHH
Q psy9269 81 GLCMRELNGLSRYNLITMNDG------FDILPTVTGSIMA 114 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~------~~i~~T~lG~i~S 114 (148)
.-+...++.|++.|+|+...+ -.+..|+-|+-..
T Consensus 60 ~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 99 (145)
T 3g3z_A 60 QTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKAYA 99 (145)
T ss_dssp HHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEeeccCCCCCceeeeeEChhHHHHH
Confidence 567789999999999997543 2488999999864
No 29
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=62.24 E-value=4.7 Score=25.68 Aligned_cols=34 Identities=12% Similarity=0.011 Sum_probs=26.0
Q ss_pred hHHHHHHHHhhhCCceeecCC---CccccChhhHHHH
Q psy9269 81 GLCMRELNGLSRYNLITMNDG---FDILPTVTGSIMA 114 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~---~~i~~T~lG~i~S 114 (148)
.-+...++.|++.|+|....+ ..+..|+-|+...
T Consensus 45 ~tvs~~l~~Le~~Glv~~~~d~R~~~v~LT~~G~~~~ 81 (95)
T 2qvo_A 45 SYVWLIIKKFEEAKMVECELEGRTKIIRLTDKGQKIA 81 (95)
T ss_dssp HHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHCcCccCCCCCCeEEEEEChhHHHHH
Confidence 566788999999999943333 2589999998764
No 30
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=61.93 E-value=7 Score=26.40 Aligned_cols=35 Identities=17% Similarity=0.166 Sum_probs=26.5
Q ss_pred hHHHHHHHHhhhCCceeecCC------CccccChhhHHHHh
Q psy9269 81 GLCMRELNGLSRYNLITMNDG------FDILPTVTGSIMAK 115 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~------~~i~~T~lG~i~S~ 115 (148)
.-+...++.|++.|+|+...+ -.+..|+-|+-+..
T Consensus 72 ~~vs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~ 112 (148)
T 3jw4_A 72 ASITSMLQGLEKKGYIERRIPENNARQKNIYVLPKGAALVE 112 (148)
T ss_dssp -CHHHHHHHHHHTTSBCCC--------CCCCBCHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCEEeeCCCCCchhheeeECHHHHHHHH
Confidence 456788999999999987643 35889999997754
No 31
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=61.34 E-value=7 Score=26.27 Aligned_cols=36 Identities=19% Similarity=0.231 Sum_probs=27.3
Q ss_pred hHHHHHHHHhhhCCceeecCC------CccccChhhHHHHhc
Q psy9269 81 GLCMRELNGLSRYNLITMNDG------FDILPTVTGSIMAKF 116 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~------~~i~~T~lG~i~S~~ 116 (148)
.-|...++.|++.|+|+...+ ..+.+|+-|+....-
T Consensus 69 ~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~lT~~G~~~~~~ 110 (148)
T 3nrv_A 69 AAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEV 110 (148)
T ss_dssp HHHHHHHHHHHHTTSEEC---------CCBEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEeecCCCCcceeEeEECHhHHHHHHH
Confidence 567789999999999997643 358999999977654
No 32
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=61.09 E-value=7.8 Score=25.89 Aligned_cols=35 Identities=11% Similarity=0.055 Sum_probs=27.6
Q ss_pred hHHHHHHHHhhhCCceeecCC------CccccChhhHHHHh
Q psy9269 81 GLCMRELNGLSRYNLITMNDG------FDILPTVTGSIMAK 115 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~------~~i~~T~lG~i~S~ 115 (148)
.-+...++.|++.|+|....+ -.+.+|+-|+-...
T Consensus 68 ~tvs~~l~~Le~~Glv~r~~~~~D~R~~~i~LT~~G~~~~~ 108 (127)
T 2frh_A 68 PQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKIE 108 (127)
T ss_dssp HHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHH
Confidence 556788999999999988543 34889999987643
No 33
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=60.42 E-value=5.3 Score=26.83 Aligned_cols=35 Identities=11% Similarity=0.017 Sum_probs=28.0
Q ss_pred hHHHHHHHHhhhCCceeecCC------CccccChhhHHHHh
Q psy9269 81 GLCMRELNGLSRYNLITMNDG------FDILPTVTGSIMAK 115 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~------~~i~~T~lG~i~S~ 115 (148)
.-+...++.|++.|+|....+ -.+.+|+-|+..-.
T Consensus 65 ~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~ 105 (144)
T 3f3x_A 65 SAITAAVDKLEAKGLVRRIRDSKDRRIVIVEITPKGRQVLL 105 (144)
T ss_dssp HHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCEEeccCCCCCceEEEEECHHHHHHHH
Confidence 566788999999999997643 14899999997754
No 34
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=59.74 E-value=6 Score=26.33 Aligned_cols=35 Identities=23% Similarity=0.123 Sum_probs=28.0
Q ss_pred hHHHHHHHHhhhCCceeecCC------CccccChhhHHHHh
Q psy9269 81 GLCMRELNGLSRYNLITMNDG------FDILPTVTGSIMAK 115 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~------~~i~~T~lG~i~S~ 115 (148)
.-+...++.|++.|+|+...+ -.+.+|+-|+.+..
T Consensus 62 ~tvs~~l~~Le~~Gli~r~~~~~D~R~~~~~LT~~G~~~~~ 102 (139)
T 3eco_A 62 PTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLVE 102 (139)
T ss_dssp HHHHHHHHHHHHTTSEEEEECCC--CCEEEEECHHHHHHHH
T ss_pred ccHHHHHHHHHHCCCEeecCCCCCCCeeeeEECHHHHHHHH
Confidence 567789999999999987643 24789999998764
No 35
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=58.54 E-value=6.4 Score=27.25 Aligned_cols=35 Identities=26% Similarity=0.183 Sum_probs=27.6
Q ss_pred hHHHHHHHHhhhCCceeecCC------CccccChhhHHHHh
Q psy9269 81 GLCMRELNGLSRYNLITMNDG------FDILPTVTGSIMAK 115 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~------~~i~~T~lG~i~S~ 115 (148)
.-+...++.|++.|+|....+ -.+.+|+-|+-+-.
T Consensus 61 ~tvs~~v~~Le~~GlV~R~~~~~DrR~~~l~LT~~G~~~~~ 101 (151)
T 4aik_A 61 PSLVRTLDQLEEKGLITRHTSANDRRAKRIKLTEQSSPIIE 101 (151)
T ss_dssp HHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECGGGHHHHH
T ss_pred HHHHHHHHHHHhCCCeEeecCCCCCcchhhhcCHHHHHHHH
Confidence 556788999999999986543 24899999987643
No 36
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=57.75 E-value=8.7 Score=25.98 Aligned_cols=35 Identities=17% Similarity=0.155 Sum_probs=26.5
Q ss_pred hHHHHHHHHhhhCCceee----cCC----CccccChhhHHHHh
Q psy9269 81 GLCMRELNGLSRYNLITM----NDG----FDILPTVTGSIMAK 115 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~----~~~----~~i~~T~lG~i~S~ 115 (148)
.-|...++.|++.|+|.. +++ -.+.+|+-|+.+-.
T Consensus 66 ~~vs~~l~~Le~~Glv~r~~~~~~~D~R~~~~~lT~~G~~~~~ 108 (151)
T 3kp7_A 66 AAVSRRVKKLLNAELVKLEKPDSNTDQRLKIIKLSNKGKKYIK 108 (151)
T ss_dssp SHHHHHHHHHHHTTSEEC-----------CCBEECHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEeeCCCCCCCCCeeEEEECHhHHHHHH
Confidence 567789999999999997 222 35899999997654
No 37
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=57.42 E-value=7.4 Score=26.32 Aligned_cols=36 Identities=14% Similarity=0.025 Sum_probs=26.2
Q ss_pred hHHHHHHHHhhhCCceeecCC------CccccChhhHHHHhc
Q psy9269 81 GLCMRELNGLSRYNLITMNDG------FDILPTVTGSIMAKF 116 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~------~~i~~T~lG~i~S~~ 116 (148)
.-+...++.|++.|+|+...+ -.+..|+-|+-...-
T Consensus 69 ~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~ 110 (150)
T 3fm5_A 69 SQIVGLVDELEERGLVVRTLDPSDRRNKLIAATEEGRRLRDD 110 (150)
T ss_dssp HHHHHHHHHHHTTTSEEC-----------CEECHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCEEeeCCccccchheeeECHHHHHHHHH
Confidence 566788999999999997654 238899999876543
No 38
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=57.40 E-value=8.9 Score=25.49 Aligned_cols=37 Identities=19% Similarity=0.114 Sum_probs=29.3
Q ss_pred hHHHHHHHHhhhCCceeecCC------CccccChhhHHHHhcC
Q psy9269 81 GLCMRELNGLSRYNLITMNDG------FDILPTVTGSIMAKFC 117 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~------~~i~~T~lG~i~S~~Y 117 (148)
.-+...++.|++.|+|....+ -.+.+|+.|+....-.
T Consensus 67 ~~vs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~ 109 (146)
T 2fbh_A 67 PTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLIADI 109 (146)
T ss_dssp HHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHHHHHHH
T ss_pred hhHHHHHHHHHHCCCeeecCCCcccCeeeeEECHhHHHHHHHH
Confidence 567789999999999998653 2488999999876543
No 39
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=57.25 E-value=9.2 Score=25.56 Aligned_cols=36 Identities=17% Similarity=-0.018 Sum_probs=27.8
Q ss_pred hHHHHHHHHhhhCCceeecCC------CccccChhhHHHHhc
Q psy9269 81 GLCMRELNGLSRYNLITMNDG------FDILPTVTGSIMAKF 116 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~------~~i~~T~lG~i~S~~ 116 (148)
.-|...++.|++.|+|+...+ -.+.+|+-|+..-.-
T Consensus 65 ~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~ 106 (147)
T 2hr3_A 65 SNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNLYG 106 (147)
T ss_dssp HHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHHHHH
T ss_pred hhHHHHHHHHHHCCCEeeCCCCCCCCceeeEECHHHHHHHHH
Confidence 567788999999999987643 237899999876543
No 40
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=57.18 E-value=10 Score=25.68 Aligned_cols=36 Identities=17% Similarity=0.147 Sum_probs=28.0
Q ss_pred hHHHHHHHHhhhCCceeecCC------CccccChhhHHHHhc
Q psy9269 81 GLCMRELNGLSRYNLITMNDG------FDILPTVTGSIMAKF 116 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~------~~i~~T~lG~i~S~~ 116 (148)
.-|...++.|++.|+|+...+ -.+..|+.|+....-
T Consensus 72 ~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~ 113 (155)
T 3cdh_A 72 SRMTRIVDQMDARGLVTRVADAKDKRRVRVRLTDDGRALAES 113 (155)
T ss_dssp HHHHHHHHHHHHTTSEEECC------CCCEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEeccCCCcCCeeEeEECHHHHHHHHH
Confidence 567789999999999997643 248899999876543
No 41
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=57.08 E-value=9.3 Score=26.65 Aligned_cols=36 Identities=19% Similarity=0.071 Sum_probs=27.9
Q ss_pred hHHHHHHHHhhhCCceeecCC------CccccChhhHHHHhc
Q psy9269 81 GLCMRELNGLSRYNLITMNDG------FDILPTVTGSIMAKF 116 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~------~~i~~T~lG~i~S~~ 116 (148)
.-|...++.|++.|+|+...+ -.+.+|+-|+-+..-
T Consensus 83 ~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~ 124 (166)
T 3deu_A 83 PSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLIAE 124 (166)
T ss_dssp HHHHHHHHHHHHTTSEEEC--------CEEEECGGGHHHHHH
T ss_pred hhHHHHHHHHHHCCCEEeeCCCCCCCeeEEEECHHHHHHHHH
Confidence 567789999999999998653 358899999977543
No 42
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=55.90 E-value=11 Score=25.39 Aligned_cols=36 Identities=19% Similarity=0.151 Sum_probs=28.4
Q ss_pred hHHHHHHHHhhhCCceeecCC------CccccChhhHHHHhc
Q psy9269 81 GLCMRELNGLSRYNLITMNDG------FDILPTVTGSIMAKF 116 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~------~~i~~T~lG~i~S~~ 116 (148)
.-+...++.|++.|+|....+ -.+.+|+.|+....-
T Consensus 69 ~~vs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~ 110 (152)
T 3bj6_A 69 QYISRILQEVQRAGLIERRTNPEHARSHRYWLTPRGEAIITA 110 (152)
T ss_dssp HHHHHHHHHHHHTTSEEEECCSSSTTSCEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCeeecCCcccccceeeEEChhhHHHHHH
Confidence 567789999999999998643 247899999876543
No 43
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=55.88 E-value=7.4 Score=26.67 Aligned_cols=36 Identities=14% Similarity=0.205 Sum_probs=28.5
Q ss_pred hHHHHHHHHhhhCCceeecCC------CccccChhhHHHHhc
Q psy9269 81 GLCMRELNGLSRYNLITMNDG------FDILPTVTGSIMAKF 116 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~------~~i~~T~lG~i~S~~ 116 (148)
.-+...++.|++.|+|+...+ -.+..|+-|+..-.-
T Consensus 79 ~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~ 120 (159)
T 3s2w_A 79 GTTARAIQKLVDEGYVFRQRDEKDRRSYRVFLTEKGKKLEPD 120 (159)
T ss_dssp HHHHHHHHHHHHTTSEEEEECC---CCEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEecCCCCCCeeEEEECHHHHHHHHH
Confidence 567789999999999987643 248899999977543
No 44
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=55.84 E-value=9.4 Score=25.48 Aligned_cols=38 Identities=8% Similarity=0.018 Sum_probs=27.8
Q ss_pred hHHHHHHHHhhhCCceeecCC------CccccChhhHHHHhcCC
Q psy9269 81 GLCMRELNGLSRYNLITMNDG------FDILPTVTGSIMAKFCI 118 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~------~~i~~T~lG~i~S~~YI 118 (148)
.-|...++.|++.|+|....+ -.+..|+-|+....-..
T Consensus 66 ~tvs~~l~~L~~~Glv~r~~~~~d~R~~~~~lT~~g~~~~~~~~ 109 (146)
T 3tgn_A 66 AAVTKAIKSLVKEGMLETSKDSKDARVIFYQLTDLARPIAEEHH 109 (146)
T ss_dssp HHHHHHHHHHHHTTSEEC----------CCEECGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCeEeccCCCCCceeEEEECHhHHHHHHHHH
Confidence 556788999999999987653 35899999988765543
No 45
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=55.48 E-value=7.6 Score=26.64 Aligned_cols=35 Identities=14% Similarity=0.072 Sum_probs=27.6
Q ss_pred hHHHHHHHHhhhCCceeecCC------CccccChhhHHHHh
Q psy9269 81 GLCMRELNGLSRYNLITMNDG------FDILPTVTGSIMAK 115 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~------~~i~~T~lG~i~S~ 115 (148)
.-+...++.|++.|+|+...+ -.+..|+-|+-+-.
T Consensus 66 ~tvs~~v~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~ 106 (147)
T 4b8x_A 66 TSVTNTVDRLVRSGLVAKRPNPNDGRGTLATITDKGREVVE 106 (147)
T ss_dssp HHHHHHHHHHHHTTSEEEEECC----CEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCEEEeecCCcCceeEEEECHHHHHHHH
Confidence 556778999999999987654 24899999987643
No 46
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=54.89 E-value=9.8 Score=25.13 Aligned_cols=33 Identities=18% Similarity=0.194 Sum_probs=26.2
Q ss_pred hHHHHHHHHhhhCCceeecCC--CccccChhhHHH
Q psy9269 81 GLCMRELNGLSRYNLITMNDG--FDILPTVTGSIM 113 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~--~~i~~T~lG~i~ 113 (148)
..+...|+.|++.|+|+.... -.+..|+.|+-.
T Consensus 58 ~~ls~~L~~Le~~GlV~r~~~r~~~y~LT~~G~~l 92 (111)
T 3df8_A 58 TILSRRIKDLIDSGLVERRSGQITTYALTEKGMNV 92 (111)
T ss_dssp HHHHHHHHHHHHTTSEEEEESSSEEEEECHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEeecCcEEEEECccHHHH
Confidence 556788999999999997642 458899999854
No 47
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=54.23 E-value=8.1 Score=26.59 Aligned_cols=36 Identities=14% Similarity=-0.028 Sum_probs=28.4
Q ss_pred hHHHHHHHHhhhCCceeecCC------CccccChhhHHHHhc
Q psy9269 81 GLCMRELNGLSRYNLITMNDG------FDILPTVTGSIMAKF 116 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~------~~i~~T~lG~i~S~~ 116 (148)
.-|...++.|++.|+|+...+ -.+..|+-|+-+..-
T Consensus 75 ~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~ 116 (162)
T 3k0l_A 75 QSANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGLDKLNQ 116 (162)
T ss_dssp GGHHHHHHHHHHTTSEEEEECCSSSCCEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCeEecCCCCcCCeeEeEECHhHHHHHHH
Confidence 456788999999999997643 248999999977543
No 48
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=54.09 E-value=10 Score=25.80 Aligned_cols=36 Identities=11% Similarity=0.007 Sum_probs=26.8
Q ss_pred hHHHHHHHHhhhCCceeecCC------CccccChhhHHHHhc
Q psy9269 81 GLCMRELNGLSRYNLITMNDG------FDILPTVTGSIMAKF 116 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~------~~i~~T~lG~i~S~~ 116 (148)
.-|...++.|++.|+|....+ ..+.+|+.|+..-.-
T Consensus 78 ~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~ 119 (162)
T 2fa5_A 78 VAVSRAVARLLERGFIRRETHGDDRRRSMLALSPAGRQVYET 119 (162)
T ss_dssp HHHHHHHHHHHHTTSEEC---------CCCEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEeeecCCCCCCeeEEEECHHHHHHHHH
Confidence 567789999999999987542 347899999876543
No 49
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=54.09 E-value=8.5 Score=25.44 Aligned_cols=38 Identities=18% Similarity=0.191 Sum_probs=29.1
Q ss_pred hHHHHHHHHhhhCCceeecCC------CccccChhhHHHHhcCC
Q psy9269 81 GLCMRELNGLSRYNLITMNDG------FDILPTVTGSIMAKFCI 118 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~------~~i~~T~lG~i~S~~YI 118 (148)
.-+...++.|++.|+|....+ -.+.+|+-|+.+..-..
T Consensus 63 ~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 106 (138)
T 1jgs_A 63 GALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAICEQCH 106 (138)
T ss_dssp HHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEecCCcccCceeEeEEChhHHHHHHHHH
Confidence 567788999999999987532 23889999998765443
No 50
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=53.85 E-value=4.9 Score=25.49 Aligned_cols=33 Identities=21% Similarity=0.121 Sum_probs=25.8
Q ss_pred HHHHHHHhhhCCceeecCC----CccccChhhHHHHh
Q psy9269 83 CMRELNGLSRYNLITMNDG----FDILPTVTGSIMAK 115 (148)
Q Consensus 83 v~~~l~~L~~~~lI~~~~~----~~i~~T~lG~i~S~ 115 (148)
+...++.|++.|+|..++. ..+..|+-|+....
T Consensus 48 vs~~l~~Le~~Glv~~~~~drR~~~~~LT~~G~~~~~ 84 (95)
T 2pg4_A 48 FMGLKDRLIRAGLVKEETLSYRVKTLKLTEKGRRLAE 84 (95)
T ss_dssp HTTHHHHHHHTTSEEEEEEETTEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHCCCeecCCCCCCeEEEEECHhHHHHHH
Confidence 6778999999999995432 34889999987643
No 51
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=53.47 E-value=7.5 Score=25.75 Aligned_cols=35 Identities=9% Similarity=-0.057 Sum_probs=27.2
Q ss_pred hHHHHHHHHhhhCCceeecCC------CccccChhhHHHHh
Q psy9269 81 GLCMRELNGLSRYNLITMNDG------FDILPTVTGSIMAK 115 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~------~~i~~T~lG~i~S~ 115 (148)
.-|...++.|++.|+|....+ -.+.+|+-|+.+..
T Consensus 65 ~tvs~~l~~Le~~Gli~r~~~~~d~R~~~i~lT~~G~~~~~ 105 (141)
T 3bro_A 65 STATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLET 105 (141)
T ss_dssp HHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTTHH
T ss_pred chHHHHHHHHHHCCCEEeeCCCcCCCeeeeEECHHHHHHHH
Confidence 567789999999999987543 24789999985543
No 52
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=53.24 E-value=8.9 Score=25.24 Aligned_cols=36 Identities=11% Similarity=0.042 Sum_probs=27.5
Q ss_pred hHHHHHHHHhhhCCceeecCC------CccccChhhHHHHhc
Q psy9269 81 GLCMRELNGLSRYNLITMNDG------FDILPTVTGSIMAKF 116 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~------~~i~~T~lG~i~S~~ 116 (148)
.-+...++.|++.|+|....+ -.+.+|+.|+.+..-
T Consensus 62 ~tvs~~l~~L~~~gli~r~~~~~d~r~~~~~lT~~G~~~~~~ 103 (139)
T 3bja_A 62 SNMTTMIQRMKRDGYVMTEKNPNDQRETLVYLTKKGEETKKQ 103 (139)
T ss_dssp TTHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCeeeccCCCCCceeEEEECHHHHHHHHH
Confidence 456778999999999987532 237899999987654
No 53
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=52.76 E-value=46 Score=21.78 Aligned_cols=24 Identities=17% Similarity=0.069 Sum_probs=19.8
Q ss_pred hHHHHHHHHhhhCCceeecCC-Ccc
Q psy9269 81 GLCMRELNGLSRYNLITMNDG-FDI 104 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~-~~i 104 (148)
.-|.+++..|++.|+|+..+. |.+
T Consensus 48 ~tvr~al~~L~~~Gli~~~~~~G~~ 72 (113)
T 3tqn_A 48 LTVSKAYQSLLDDNVIEKRRGLGML 72 (113)
T ss_dssp HHHHHHHHHHHHTTSEEEETTTEEE
T ss_pred HHHHHHHHHHHHCCCEEEecCCeEE
Confidence 567899999999999998765 543
No 54
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=52.66 E-value=7.4 Score=26.41 Aligned_cols=35 Identities=14% Similarity=0.060 Sum_probs=26.7
Q ss_pred hHHHHHHHHhhhCCceeecCC------CccccChhhHHHHh
Q psy9269 81 GLCMRELNGLSRYNLITMNDG------FDILPTVTGSIMAK 115 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~------~~i~~T~lG~i~S~ 115 (148)
.-+...++.|++.|+|+...+ -.+..|+-|+-+..
T Consensus 70 ~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~ 110 (149)
T 4hbl_A 70 NTLTPMLKRLEQSGWVKRERQQSDKRQLIITLTDNGQQQQE 110 (149)
T ss_dssp HHHHHHHHHHHHHTSEEC---------CEEEECSHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEeeCCCCCCcceeeeeECHHHHHHHH
Confidence 567789999999999997643 35889999998753
No 55
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=51.99 E-value=9.5 Score=25.38 Aligned_cols=36 Identities=17% Similarity=0.178 Sum_probs=28.2
Q ss_pred hHHHHHHHHhhhCCceeecCC------CccccChhhHHHHhc
Q psy9269 81 GLCMRELNGLSRYNLITMNDG------FDILPTVTGSIMAKF 116 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~------~~i~~T~lG~i~S~~ 116 (148)
.-|...++.|++.|+|....+ -.+.+|+-|+.....
T Consensus 58 ~~vs~~l~~Le~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~ 99 (144)
T 1lj9_A 58 TTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVYPI 99 (144)
T ss_dssp HHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCEEeecCCCCCceeeeEEChhHHHHHHH
Confidence 567789999999999987543 237899999877643
No 56
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=51.61 E-value=14 Score=24.81 Aligned_cols=40 Identities=13% Similarity=0.148 Sum_probs=29.5
Q ss_pred hHHHHHHHHhhhCCceee--cCC------CccccChhhHHHHhcCCCH
Q psy9269 81 GLCMRELNGLSRYNLITM--NDG------FDILPTVTGSIMAKFCIGF 120 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~--~~~------~~i~~T~lG~i~S~~YI~~ 120 (148)
.-|...++.|++.|+|.. ..+ -.+.+|+-|+.+..-....
T Consensus 70 ~tvs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~LT~~G~~~~~~~~~~ 117 (154)
T 2qww_A 70 SSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSKKGEDLSKRSTAN 117 (154)
T ss_dssp HHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEECHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHCCCEEecCcCCCCCCceeEeEECHHHHHHHHHHHhh
Confidence 567789999999999998 332 2588999999876544433
No 57
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=51.60 E-value=8.3 Score=25.09 Aligned_cols=32 Identities=22% Similarity=0.139 Sum_probs=25.1
Q ss_pred hHHHHHHHHhhhCCceeecCC------CccccChhhHH
Q psy9269 81 GLCMRELNGLSRYNLITMNDG------FDILPTVTGSI 112 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~------~~i~~T~lG~i 112 (148)
..+...|+.|++.|+|+...+ -.+..|+.|+-
T Consensus 54 ~~ls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G~~ 91 (107)
T 2fsw_A 54 KMLIDELKFLCGKGLIKKKQYPEVPPRVEYSLTPLGEK 91 (107)
T ss_dssp HHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHT
T ss_pred HHHHHHHHHHHHCCCEEEeecCCCCCeeEEEECccHHH
Confidence 567788999999999986542 24789999963
No 58
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=51.46 E-value=11 Score=25.44 Aligned_cols=38 Identities=21% Similarity=0.073 Sum_probs=29.1
Q ss_pred hHHHHHHHHhhhCCceeecCC------CccccChhhHHHHhcCC
Q psy9269 81 GLCMRELNGLSRYNLITMNDG------FDILPTVTGSIMAKFCI 118 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~------~~i~~T~lG~i~S~~YI 118 (148)
.-|...++.|++.|+|....+ -.+..|+-|+-...-..
T Consensus 76 ~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 119 (153)
T 2pex_A 76 ATLTPLLKRLQAAGLVTRTRAASDERQVIIALTETGRALRSKAG 119 (153)
T ss_dssp HHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHGGGGST
T ss_pred ccHHHHHHHHHHCCCEeecCCcccCCeeEeeECHHHHHHHHHHH
Confidence 567789999999999997653 24889999997655443
No 59
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=51.22 E-value=7.1 Score=27.07 Aligned_cols=33 Identities=12% Similarity=0.068 Sum_probs=25.9
Q ss_pred hHHHHHHHHhhhCCceeecCC------CccccChhhHHH
Q psy9269 81 GLCMRELNGLSRYNLITMNDG------FDILPTVTGSIM 113 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~------~~i~~T~lG~i~ 113 (148)
..+...|+.|++.|+|+.... -.+..|+.|+-.
T Consensus 55 ~~Ls~~L~~Le~~GLV~R~~~~~d~r~v~y~LT~~G~~l 93 (131)
T 4a5n_A 55 RMLTLQLRELEADGIVHREVYHQVPPKVEYSLTEFGRTL 93 (131)
T ss_dssp HHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGG
T ss_pred HHHHHHHHHHHHCCCEEEEecCCCCCeEEEEECHhHHHH
Confidence 567788999999999987532 247899999843
No 60
>1t98_A KICB protein, chromosome partition protein MUKF; winged helix, helix-turn helix, domain swapped, condensin; 2.90A {Escherichia coli} SCOP: a.4.5.65 a.47.6.1
Probab=50.98 E-value=7.7 Score=30.31 Aligned_cols=41 Identities=15% Similarity=0.092 Sum_probs=32.0
Q ss_pred HHHHHHHHhhhCCceeec-----C-CCccccChhhHHHHhcCCCHHH
Q psy9269 82 LCMRELNGLSRYNLITMN-----D-GFDILPTVTGSIMAKFCIGFNT 122 (148)
Q Consensus 82 ~v~~~l~~L~~~~lI~~~-----~-~~~i~~T~lG~i~S~~YI~~~T 122 (148)
=..+++++|.+.+|+..- + .+.+..||+|--++.|||..+-
T Consensus 73 RAnnAIndlv~QRll~Rftse~~dG~~IYrLTpL~igI~dYyirqre 119 (287)
T 1t98_A 73 RANNAINDMVRQRLLNRFTSEQAEGNAIYRLTPLGIGITDYYIRQRE 119 (287)
T ss_dssp HHHHHHHHHHHHTSEEECC--------CEEECHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHHHhcccccCchhhhhcchhhhhHHHHHHHHHH
Confidence 356899999999999754 2 2568999999999999998653
No 61
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=50.86 E-value=14 Score=28.22 Aligned_cols=37 Identities=11% Similarity=0.178 Sum_probs=30.3
Q ss_pred hHHHHHHHHhhhCCceeecCC-CccccChhhHHHHhcC
Q psy9269 81 GLCMRELNGLSRYNLITMNDG-FDILPTVTGSIMAKFC 117 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~-~~i~~T~lG~i~S~~Y 117 (148)
.-+...++.|++.|+|+..+. ..+.+|+.|+.+...+
T Consensus 181 sTv~r~L~~Le~~GlV~r~~r~~~~~LT~~G~~l~~~~ 218 (244)
T 2wte_A 181 KTLINKIAELKKFGILTQKGKDRKVELNELGLNVIKLN 218 (244)
T ss_dssp HHHHHHHHHHHHTTSEEEETTTTEEEECHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCEEEeCCccEEEECHHHHHHHHHH
Confidence 557789999999999998643 5699999999886553
No 62
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=50.86 E-value=9.9 Score=25.86 Aligned_cols=36 Identities=19% Similarity=0.106 Sum_probs=27.0
Q ss_pred hHHHHHHHHhhhCCceeecCC------CccccChhhHHHHhc
Q psy9269 81 GLCMRELNGLSRYNLITMNDG------FDILPTVTGSIMAKF 116 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~------~~i~~T~lG~i~S~~ 116 (148)
.-+...++.|++.|+|....+ -.+..|+.|+.+..-
T Consensus 77 ~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~ 118 (160)
T 3boq_A 77 GNVSGLVNRLIKDGMVVKAMSADDRRSFSAKLTDAGLTTFKQ 118 (160)
T ss_dssp SCHHHHHHHHHHHTSEEEC--------CEEEECHHHHHHHHH
T ss_pred hhHHHHHHHHHHCCCEEeecCCCCCCeEEEEEChhHHHHHHH
Confidence 456678899999999998643 238899999987654
No 63
>3euh_A Protein KICB, chromosome partition protein MUKF; chromosome condensation, condensin, non-SMC subunit, kleisin, calcium, cell cycle, cell division; 2.90A {Escherichia coli} PDB: 3rpu_A
Probab=50.84 E-value=11 Score=31.50 Aligned_cols=41 Identities=15% Similarity=0.044 Sum_probs=32.9
Q ss_pred hHHHHHHHHhhhCCceeecC------CCccccChhhHHHHhcCCCHH
Q psy9269 81 GLCMRELNGLSRYNLITMND------GFDILPTVTGSIMAKFCIGFN 121 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~------~~~i~~T~lG~i~S~~YI~~~ 121 (148)
.=+.++|++|.+.+|+..-. .+.+..|++|.=++.||+.-+
T Consensus 72 ~RANNaIndlV~QRLLsRf~se~~dg~~iYRLT~La~gi~dyy~rqr 118 (440)
T 3euh_A 72 VRANNAINDMVRQRLLNRFTSEQAEGNAIYRLTPLGIGITDYYIRQR 118 (440)
T ss_dssp HHHHHHHHHHHHTTSEEEEECTTSTTSEEEEECHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHhcccccccccceeeecHhhhhhhHHHHhhH
Confidence 34568999999999997532 256899999999999999754
No 64
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=50.80 E-value=8.4 Score=24.45 Aligned_cols=32 Identities=19% Similarity=-0.055 Sum_probs=25.5
Q ss_pred hHHHHHHHHhhhCCceeecCCCccccChhhHHH
Q psy9269 81 GLCMRELNGLSRYNLITMNDGFDILPTVTGSIM 113 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~~~i~~T~lG~i~ 113 (148)
.-|...|+.|++.|+|.... |.+..|+.|+..
T Consensus 58 ~tv~~~L~~L~~~Glv~~~~-g~y~l~~~g~~~ 89 (96)
T 1y0u_A 58 KQLDYHLKVLEAGFCIERVG-ERWVVTDAGKIV 89 (96)
T ss_dssp HHHHHHHHHHHHTTSEEEET-TEEEECTTTCCC
T ss_pred HHHHHHHHHHHHCCCEEEEC-CEEEECCCchHH
Confidence 56788999999999999776 677777777643
No 65
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=50.67 E-value=10 Score=25.42 Aligned_cols=36 Identities=11% Similarity=0.075 Sum_probs=28.0
Q ss_pred hHHHHHHHHhhhCCceeecCC------CccccChhhHHHHhc
Q psy9269 81 GLCMRELNGLSRYNLITMNDG------FDILPTVTGSIMAKF 116 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~------~~i~~T~lG~i~S~~ 116 (148)
.-|...++.|++.|+|....+ -.+.+|+-|+..-.-
T Consensus 71 ~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~ 112 (150)
T 2rdp_A 71 STTTDLVDRMERNGLVARVRDEHDRRVVRIRLLEKGERIIEE 112 (150)
T ss_dssp HHHHHHHHHHHHTTSEEEEECCC---CEEEEECHHHHHHHHH
T ss_pred hhHHHHHHHHHHCCCeeecCCCCCcceeEeEECHhHHHHHHH
Confidence 567789999999999987532 247899999976543
No 66
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=49.95 E-value=11 Score=25.12 Aligned_cols=36 Identities=14% Similarity=0.007 Sum_probs=28.1
Q ss_pred hHHHHHHHHhhhCCceeecCC------CccccChhhHHHHhc
Q psy9269 81 GLCMRELNGLSRYNLITMNDG------FDILPTVTGSIMAKF 116 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~------~~i~~T~lG~i~S~~ 116 (148)
.-|...++.|++.|+|....+ -.+.+|+.|+..-.-
T Consensus 65 ~tvs~~l~~Le~~glv~r~~~~~d~r~~~~~lT~~G~~~~~~ 106 (146)
T 2gxg_A 65 SAITASVDKLEEMGLVVRVRDREDRRKILIEITEKGLETFNK 106 (146)
T ss_dssp HHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHH
T ss_pred hhHHHHHHHHHHCCCEEeecCCCCCceEEEEECHHHHHHHHH
Confidence 567788999999999987532 237899999977544
No 67
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=49.79 E-value=14 Score=24.91 Aligned_cols=36 Identities=22% Similarity=0.171 Sum_probs=28.2
Q ss_pred hHHHHHHHHhhhCCceeecCC------CccccChhhHHHHhc
Q psy9269 81 GLCMRELNGLSRYNLITMNDG------FDILPTVTGSIMAKF 116 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~------~~i~~T~lG~i~S~~ 116 (148)
.-|...++.|++.|+|....+ -.+.+|+.|+.+..-
T Consensus 66 ~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~ 107 (155)
T 1s3j_A 66 SAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKFEE 107 (155)
T ss_dssp HHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEeecCCCCCCceEEEEECHHHHHHHHH
Confidence 567789999999999987643 247899999877544
No 68
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=49.79 E-value=14 Score=24.42 Aligned_cols=32 Identities=9% Similarity=0.074 Sum_probs=25.6
Q ss_pred hHHHHHHHHhhhCCceeecCCCccccChhhHHH
Q psy9269 81 GLCMRELNGLSRYNLITMNDGFDILPTVTGSIM 113 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~~~i~~T~lG~i~ 113 (148)
..+...++-|++.|+|+.++++ +..|+-|+-.
T Consensus 46 stvsrnl~~L~r~GlVe~~~~D-l~LT~~G~~~ 77 (95)
T 1bja_A 46 AVVNSNIGVLIKKGLVEKSGDG-LIITGEAQDI 77 (95)
T ss_dssp HHHHHHHHHHHTTTSEEEETTE-EEECHHHHHH
T ss_pred HHHHHHHHHHHHCCCeecCCCC-eeeCHhHHHH
Confidence 4677889999999999944434 9999999854
No 69
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=49.37 E-value=11 Score=25.76 Aligned_cols=36 Identities=19% Similarity=0.182 Sum_probs=28.1
Q ss_pred hHHHHHHHHhhhCCceeecCC------CccccChhhHHHHhc
Q psy9269 81 GLCMRELNGLSRYNLITMNDG------FDILPTVTGSIMAKF 116 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~------~~i~~T~lG~i~S~~ 116 (148)
.-|...++.|++.|+|....+ -.+.+|+.|+..-.-
T Consensus 81 ~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~ 122 (162)
T 3cjn_A 81 STLSRALDGLQADGLVRREVDSDDQRSSRVYLTPAGRAVYDR 122 (162)
T ss_dssp HHHHHHHHHHHHTTSEEEEEC--CCSSEEEEECHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHH
Confidence 567789999999999987532 247899999876544
No 70
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=49.16 E-value=11 Score=24.81 Aligned_cols=34 Identities=18% Similarity=0.123 Sum_probs=27.7
Q ss_pred hHHHHHHHHhhhCCceeecCC------CccccChhhHHHH
Q psy9269 81 GLCMRELNGLSRYNLITMNDG------FDILPTVTGSIMA 114 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~------~~i~~T~lG~i~S 114 (148)
.-|...++.|++.|+|....+ -.+.+|+-|+-..
T Consensus 60 ~~vs~~l~~L~~~gli~~~~~~~d~r~~~~~lT~~G~~~~ 99 (142)
T 3bdd_A 60 AAVTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQAREAL 99 (142)
T ss_dssp HHHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 567788999999999987643 2478999999876
No 71
>2co5_A Viral protein F93; viral protein-winged helix complex, winged helix, DNA-bindin WHTH, disulfide bond, STIV; 2.2A {Sulfolobus turreted icosahedral virus} SCOP: a.4.5.48
Probab=47.88 E-value=18 Score=23.68 Aligned_cols=34 Identities=12% Similarity=0.116 Sum_probs=26.4
Q ss_pred hHHHHHHHHhhhCCceeecCC---CccccChhhHHHH
Q psy9269 81 GLCMRELNGLSRYNLITMNDG---FDILPTVTGSIMA 114 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~---~~i~~T~lG~i~S 114 (148)
.-+.-+|+.|++.|+|+...+ -.+..|+-|+-.-
T Consensus 45 GtlYp~L~rLe~~GlI~~~~~~~rk~Y~iT~~Gr~~l 81 (99)
T 2co5_A 45 GVLYPLIDSLIDDKILREEEAPDGKVLFLTEKGMKEF 81 (99)
T ss_dssp HHHHHHHHHHHHTTSEEEECCTTSCEEEECHHHHHHH
T ss_pred CcHHHHHHHHHHCCCEEEeeCCCcEEEEECHHHHHHH
Confidence 455678899999999987542 3589999999654
No 72
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=47.74 E-value=9.6 Score=25.46 Aligned_cols=38 Identities=21% Similarity=0.245 Sum_probs=29.0
Q ss_pred hHHHHHHHHhhhCCceeecCC------CccccChhhHHHHhcCC
Q psy9269 81 GLCMRELNGLSRYNLITMNDG------FDILPTVTGSIMAKFCI 118 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~------~~i~~T~lG~i~S~~YI 118 (148)
.-|...++.|++.|+|+...+ -.+..|+-|+....-..
T Consensus 69 ~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~LT~~G~~~~~~~~ 112 (147)
T 1z91_A 69 GTLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLKEKAV 112 (147)
T ss_dssp HHHHHHHHHHHHHTSEECCBCSSCTTSBEEEECHHHHSGGGGTT
T ss_pred CcHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHHHHH
Confidence 567788999999999987643 23789999997765543
No 73
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=47.72 E-value=14 Score=25.28 Aligned_cols=33 Identities=24% Similarity=0.235 Sum_probs=23.1
Q ss_pred hHHHHHHHHhhhCCceeecCC-----CccccChhhHHH
Q psy9269 81 GLCMRELNGLSRYNLITMNDG-----FDILPTVTGSIM 113 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~-----~~i~~T~lG~i~ 113 (148)
.-+...++.|++.|+|+..+. -.+..|+-|+-+
T Consensus 67 ~tvsr~v~~Le~~glVr~~~~~DrR~~~v~LT~~G~~~ 104 (148)
T 4fx0_A 67 TTLTRNLEVMRRDGLVRVMAGADARCKRIELTAKGRAA 104 (148)
T ss_dssp HHHHHHHHHHHHTTSBC-----------CCBCHHHHHH
T ss_pred hhHHHHHHHHHHCCCEEeeCCCCCCeeEEEECHHHHHH
Confidence 456788999999999965332 258999999865
No 74
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=47.67 E-value=9 Score=24.97 Aligned_cols=32 Identities=13% Similarity=0.020 Sum_probs=25.1
Q ss_pred hHHHHHHHHhhhCCceeecCC------CccccChhhHH
Q psy9269 81 GLCMRELNGLSRYNLITMNDG------FDILPTVTGSI 112 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~------~~i~~T~lG~i 112 (148)
..+...|+.|++.|+|+...+ -.+..|+.|+-
T Consensus 43 ~tls~~L~~Le~~GlI~r~~~~~d~r~~~y~LT~~G~~ 80 (107)
T 2hzt_A 43 KMLTQQLRELEADGVINRIVYNQVPPKVEYELSEYGRS 80 (107)
T ss_dssp HHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGG
T ss_pred HHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECccHHH
Confidence 567788999999999986542 24789999964
No 75
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=47.31 E-value=10 Score=25.02 Aligned_cols=36 Identities=11% Similarity=0.063 Sum_probs=28.0
Q ss_pred hHHHHHHHHhhhCCceeecCC------CccccChhhHHHHhc
Q psy9269 81 GLCMRELNGLSRYNLITMNDG------FDILPTVTGSIMAKF 116 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~------~~i~~T~lG~i~S~~ 116 (148)
.-|...++.|++.|+|....+ -.+.+|+.|+....-
T Consensus 67 ~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~ 108 (140)
T 2nnn_A 67 ATIKGVVERLDKRGLIQRSADPDDGRRLLVSLSPAGRAELEA 108 (140)
T ss_dssp HHHHHHHHHHHHTTCEEEEEETTEEEEEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEeeCCCCCCCeeeeEECHhHHHHHHH
Confidence 567789999999999997532 248899999876543
No 76
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=47.15 E-value=10 Score=24.96 Aligned_cols=36 Identities=19% Similarity=0.257 Sum_probs=27.8
Q ss_pred hHHHHHHHHhhhCCceeecCC------CccccChhhHHHHhc
Q psy9269 81 GLCMRELNGLSRYNLITMNDG------FDILPTVTGSIMAKF 116 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~------~~i~~T~lG~i~S~~ 116 (148)
.-|...++.|++.|+|....+ -.+.+|+.|+....-
T Consensus 58 ~tvs~~l~~L~~~glv~~~~~~~d~R~~~~~lT~~G~~~~~~ 99 (138)
T 3bpv_A 58 GTIARTLRRLEESGFIEREQDPENRRRYILEVTRRGEEIIPL 99 (138)
T ss_dssp HHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHTHHH
T ss_pred HHHHHHHHHHHHCCCEEeecCCCCceeEEeeECHhHHHHHHH
Confidence 567789999999999997532 237899999876543
No 77
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=47.05 E-value=10 Score=25.05 Aligned_cols=36 Identities=14% Similarity=-0.039 Sum_probs=27.9
Q ss_pred hHHHHHHHHhhhCCceeecCC------CccccChhhHHHHhc
Q psy9269 81 GLCMRELNGLSRYNLITMNDG------FDILPTVTGSIMAKF 116 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~------~~i~~T~lG~i~S~~ 116 (148)
.-+...++.|++.|+|....+ -.+..|+.|+..-.-
T Consensus 65 ~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~ 106 (142)
T 2fbi_A 65 PSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCFVS 106 (142)
T ss_dssp HHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCEEeecCCCCCCeeEEEECHHHHHHHHH
Confidence 567788999999999987532 237899999977543
No 78
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=46.88 E-value=63 Score=22.82 Aligned_cols=35 Identities=23% Similarity=0.077 Sum_probs=26.0
Q ss_pred hHHHHHHHHhhhCCceeecCC--------CccccChhhHHHHh
Q psy9269 81 GLCMRELNGLSRYNLITMNDG--------FDILPTVTGSIMAK 115 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~--------~~i~~T~lG~i~S~ 115 (148)
.-+...|+.|++.|+|+.... -.+..|+.|+-.-.
T Consensus 38 ~~ly~~L~~Le~~GlI~~~~~~~~~~~~r~~Y~lT~~G~~~l~ 80 (179)
T 1yg2_A 38 QQVYRELNKMGEQGLVTCVLEPQEGKPDRKVYSITQAGRSALG 80 (179)
T ss_dssp HHHHHHHHHHHHTTSEEECCC---------CEEECHHHHHHHH
T ss_pred CcHHHHHHHHHHCCCeEEEeecCCCCCCceEEEeChHHHHHHH
Confidence 456688999999999986432 24788999986543
No 79
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=46.22 E-value=11 Score=25.11 Aligned_cols=36 Identities=11% Similarity=0.067 Sum_probs=28.2
Q ss_pred hHHHHHHHHhhhCCceeecCC------CccccChhhHHHHhc
Q psy9269 81 GLCMRELNGLSRYNLITMNDG------FDILPTVTGSIMAKF 116 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~------~~i~~T~lG~i~S~~ 116 (148)
.-+...++.|++.|+|....+ -.+.+|+.|+....-
T Consensus 62 ~tvs~~l~~L~~~glv~r~~~~~d~r~~~~~lT~~G~~~~~~ 103 (145)
T 2a61_A 62 STVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVIEK 103 (145)
T ss_dssp HHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHH
T ss_pred hhHHHHHHHHHHCCCeeecCCCCCCceEEEEECHHHHHHHHH
Confidence 567789999999999997632 247899999877543
No 80
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=46.20 E-value=10 Score=26.20 Aligned_cols=36 Identities=17% Similarity=0.094 Sum_probs=28.5
Q ss_pred hHHHHHHHHhhhCCceeecCC------CccccChhhHHHHhc
Q psy9269 81 GLCMRELNGLSRYNLITMNDG------FDILPTVTGSIMAKF 116 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~------~~i~~T~lG~i~S~~ 116 (148)
.-|...++.|++.|+|+...+ -.+..|+-|+-+-.-
T Consensus 77 ~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~ 118 (168)
T 3u2r_A 77 PDITRLIDRLDDRGLVLRTRKPENRRVVEVALTDAGLKLLKD 118 (168)
T ss_dssp THHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHH
T ss_pred hhHHHHHHHHHHCCCEeecCCCCCCCeeEeEECHHHHHHHHH
Confidence 567789999999999997643 258999999977543
No 81
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=46.17 E-value=12 Score=23.33 Aligned_cols=33 Identities=18% Similarity=0.036 Sum_probs=24.6
Q ss_pred hHHHHHHHHhhhCCceeecC---C---CccccChhhHHH
Q psy9269 81 GLCMRELNGLSRYNLITMND---G---FDILPTVTGSIM 113 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~---~---~~i~~T~lG~i~ 113 (148)
.-+...++.|++.|+|.... + ..+..|+-|+..
T Consensus 45 ~tvs~~l~~L~~~gli~~~~~~~~~r~~~~~lt~~g~~~ 83 (100)
T 1ub9_A 45 GNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGMEE 83 (100)
T ss_dssp HHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEEecCCCcceEEEEECHHHHHH
Confidence 45678899999999998533 2 347889999643
No 82
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=46.08 E-value=13 Score=25.18 Aligned_cols=37 Identities=11% Similarity=0.135 Sum_probs=28.6
Q ss_pred hHHHHHHHHhhhCCceeecCC------CccccChhhHHHHhcC
Q psy9269 81 GLCMRELNGLSRYNLITMNDG------FDILPTVTGSIMAKFC 117 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~------~~i~~T~lG~i~S~~Y 117 (148)
.-|...++.|++.|+|....+ -.+.+|+-|+.+..-.
T Consensus 73 ~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~~ 115 (154)
T 2eth_A 73 SNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIFGEI 115 (154)
T ss_dssp HHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEeeCCCCCcceeEEEECHHHHHHHHHH
Confidence 567789999999999987532 2478999999876543
No 83
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=46.05 E-value=13 Score=25.78 Aligned_cols=36 Identities=17% Similarity=0.016 Sum_probs=27.8
Q ss_pred hHHHHHHHHhhhCCceeecCC------CccccChhhHHHHhc
Q psy9269 81 GLCMRELNGLSRYNLITMNDG------FDILPTVTGSIMAKF 116 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~------~~i~~T~lG~i~S~~ 116 (148)
.-|...++.|++.|+|....+ -.+..|+.|+....-
T Consensus 74 ~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~~~ 115 (168)
T 2nyx_A 74 SATGRMVDRLVGAELIDRLPHPTSRRELLAALTKRGRDVVRQ 115 (168)
T ss_dssp HHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHHH
Confidence 567789999999999987432 238899999876543
No 84
>3aaf_A Werner syndrome ATP-dependent helicase; helix-turn-helix, winged-helix, protein-DNA complex, DNA-BIN helicase; HET: DNA; 1.90A {Homo sapiens} PDB: 2axl_A
Probab=45.89 E-value=28 Score=24.03 Aligned_cols=44 Identities=9% Similarity=-0.026 Sum_probs=31.2
Q ss_pred CCCCCCCCCChHHHHHHHhhhhHhHHHHHHHHhhhCCceeecCCC-----ccccChhhHHH
Q psy9269 58 GHYGFPAGLSSEELQSRLQGKNSGLCMRELNGLSRYNLITMNDGF-----DILPTVTGSIM 113 (148)
Q Consensus 58 ~~Yg~~~~~~~~~~~~~l~~~~~~~v~~~l~~L~~~~lI~~~~~~-----~i~~T~lG~i~ 113 (148)
..||+..+.+. ......+++|...|++..+.+. .+..|+.|+-.
T Consensus 57 ~tfGigk~~s~------------~~w~~lirqLi~~G~L~~~~~~~~~~~~L~Lt~~g~~v 105 (134)
T 3aaf_A 57 SLFGTGKDQTE------------SWWKAFSRQLITEGFLVEVSRYNKFMKICALTKKGRNW 105 (134)
T ss_dssp TTTTTTTTSCH------------HHHHHHHHHHHHTTSEEEEECSSTTCEEEEECHHHHHH
T ss_pred CccCCCCCCCH------------HHHHHHHHHHHHcCCceeecCcCccCceEEECHHHHHH
Confidence 56888655554 3455677789999999876542 28899998844
No 85
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=45.59 E-value=15 Score=24.29 Aligned_cols=38 Identities=16% Similarity=0.057 Sum_probs=29.0
Q ss_pred hHHHHHHHHhhhCCceeecCC------CccccChhhHHHHhcCC
Q psy9269 81 GLCMRELNGLSRYNLITMNDG------FDILPTVTGSIMAKFCI 118 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~------~~i~~T~lG~i~S~~YI 118 (148)
.-|...++.|++.|+|....+ -.+..|+-|+....-..
T Consensus 66 ~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 109 (142)
T 2bv6_A 66 GTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIRPELS 109 (142)
T ss_dssp TTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHCCCEEeecCCCCcceEEEEEChHHHHHHHHHH
Confidence 456788999999999987643 24789999987765443
No 86
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=45.00 E-value=66 Score=21.40 Aligned_cols=61 Identities=15% Similarity=0.045 Sum_probs=35.3
Q ss_pred hHHHHHHHHhhhCCceeecCC-CccccChhhHHHHhcC-CCHHHHHhc-----cCCCCHHHHHHhhhC
Q psy9269 81 GLCMRELNGLSRYNLITMNDG-FDILPTVTGSIMAKFC-IGFNTMVAF-----TGWEKAQKDLALLTT 141 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~-~~i~~T~lG~i~S~~Y-I~~~T~~~~-----~~~~s~~~lL~ll~~ 141 (148)
.-|.+|+..|++.|+|...+. |.+...+...+..... .-......| ..+.+..++..++..
T Consensus 52 ~tvr~Al~~L~~~G~i~~~~g~G~~V~~~~~~~~~~~~~~~~~~le~~~~~~~~~g~~~~ei~~l~~~ 119 (125)
T 3neu_A 52 NTVSRAYQELERAGYIYAKRGMGSFVTSDKALFDQLKKELADAITERFLEEAKSIGLDDQTAIELLIK 119 (125)
T ss_dssp HHHHHHHHHHHHTTSEEEETTTEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCeEEEecCCEEEEecCchhhHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 678899999999999998775 5554433322221110 001112222 556777777777654
No 87
>3euk_L Chromosome partition protein MUKE; MUKB, MUKF, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 4.00A {Haemophilus ducreyi}
Probab=44.67 E-value=16 Score=28.15 Aligned_cols=28 Identities=18% Similarity=0.113 Sum_probs=22.1
Q ss_pred hHHHHHHHHhhhCCceeecC--C-CccccCh
Q psy9269 81 GLCMRELNGLSRYNLITMND--G-FDILPTV 108 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~--~-~~i~~T~ 108 (148)
+.+.+++..|.+.|||...+ + +.|.+|+
T Consensus 152 ekv~ksLrrL~Rlg~I~~~~~~d~~kf~ite 182 (238)
T 3euk_L 152 EKVGGALRRLARIGIITRVGEQNSKKFIISE 182 (238)
T ss_dssp HHHHHHHHHHHHTTSEEEC------CEEECG
T ss_pred HHHHHHHHHHHhcCcEEeecCCCcceEEecH
Confidence 88999999999999999886 3 5666665
No 88
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=44.20 E-value=14 Score=26.32 Aligned_cols=36 Identities=11% Similarity=0.061 Sum_probs=28.2
Q ss_pred hHHHHHHHHhhhCCceeecCC------CccccChhhHHHHhc
Q psy9269 81 GLCMRELNGLSRYNLITMNDG------FDILPTVTGSIMAKF 116 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~------~~i~~T~lG~i~S~~ 116 (148)
.-+...++.|++.|+|+...+ -.+.+|+-|+-+..-
T Consensus 72 ~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~ 113 (189)
T 3nqo_A 72 QNINRLVANLEKNGYVDVIPSPHDKRAINVKVTDLGKKVMVT 113 (189)
T ss_dssp HHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHHH
Confidence 567789999999999997543 248999999876543
No 89
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84
Probab=43.93 E-value=21 Score=25.35 Aligned_cols=31 Identities=16% Similarity=0.182 Sum_probs=23.3
Q ss_pred hHHHHHHHHhhhCCceeecCCCccccChhhH
Q psy9269 81 GLCMRELNGLSRYNLITMNDGFDILPTVTGS 111 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~~~i~~T~lG~ 111 (148)
..|.+++..|++.|+|+..+++....|+.|.
T Consensus 96 ~tVR~AL~~Le~~GlV~~~~~~G~~Vt~~~~ 126 (150)
T 2v7f_A 96 SIIRKALQQLEAAGFVEKVPGKGRVITPKGR 126 (150)
T ss_dssp HHHHHHHHHHHHTTSEEEETTTEEEECHHHH
T ss_pred HHHHHHHHHHHHCCCEEEeCCCceEECCCCH
Confidence 7889999999999999987652334455553
No 90
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=43.89 E-value=16 Score=24.07 Aligned_cols=34 Identities=21% Similarity=0.121 Sum_probs=26.2
Q ss_pred hHHHHHHHHhhhCCceeecCC----CccccChhhHHHH
Q psy9269 81 GLCMRELNGLSRYNLITMNDG----FDILPTVTGSIMA 114 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~----~~i~~T~lG~i~S 114 (148)
.-+...++.|++.|+|....+ +.+..|+-|+.+-
T Consensus 51 stLsR~l~rLe~~GLV~r~~~~D~R~~v~LT~~G~~~l 88 (96)
T 2obp_A 51 SVLRRVLTQLQAAGLADVSVEADGRGHASLTQEGAALA 88 (96)
T ss_dssp HHHHHHHHHHHHTTSEEEEECTTSCEEEEECHHHHHHH
T ss_pred hhHHHHHHHHHHCCCEEeecCCCCceeEEECHHHHHHH
Confidence 345577889999999997432 5689999998764
No 91
>3euh_C MUKE, chromosome partition protein MUKF; chromosome condensation, condensin, non-SMC subunit, kleisin, calcium, cell cycle, cell division; 2.90A {Escherichia coli} PDB: 3rpu_G
Probab=43.68 E-value=21 Score=27.31 Aligned_cols=71 Identities=18% Similarity=0.099 Sum_probs=40.8
Q ss_pred HHhCCcCCHHHHHHHHHhHHHHHHHhh--CCCCCCCCCCCChHHHHHHHhhhhHhHHHHHHHHhhhCCceeecC-C-Ccc
Q psy9269 29 IVLKTISDVSVAVEWLRSTFFFVRVLS--NPGHYGFPAGLSSEELQSRLQGKNSGLCMRELNGLSRYNLITMND-G-FDI 104 (148)
Q Consensus 29 Ia~g~i~s~~~~~~wl~~TFly~Rl~~--nP~~Yg~~~~~~~~~~~~~l~~~~~~~v~~~l~~L~~~~lI~~~~-~-~~i 104 (148)
.+.+.|-+.+++++=|..-+==-++.+ ||..=| ++.+. ..+. +.+.+++..|.+.|||..-+ + +.|
T Consensus 109 La~~gift~qeL~eeL~sl~dE~kLlkl~~~R~~G-----SDlD~-~kl~----ekv~~sLrrL~RlgmI~~~~~d~~kf 178 (234)
T 3euh_C 109 LANEGIFTQQELYDELLTLADEAKLLKLVNNRSTG-----SDVDR-QKLQ----EKVRSSLNRLRRLGMVWFMGHDSSKF 178 (234)
T ss_dssp GGGTTEEEHHHHHHHHHHHSCHHHHHHHHSSSCSS-----CHHHH-HHHH----HHHHHHHHHHHHTTSEEECSSSSSEE
T ss_pred HhcCCcccHHHHHHHHHHhhCHHHHHHHHhccCCC-----chhhH-HHHH----HHHHHHHHHHHhcCcEEEecCCCCeE
Confidence 444455666666665543332222222 333211 22221 3344 89999999999999999843 3 667
Q ss_pred ccChh
Q psy9269 105 LPTVT 109 (148)
Q Consensus 105 ~~T~l 109 (148)
.+|+.
T Consensus 179 ~itea 183 (234)
T 3euh_C 179 RITES 183 (234)
T ss_dssp EECGG
T ss_pred EecHH
Confidence 77653
No 92
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=42.42 E-value=14 Score=27.32 Aligned_cols=36 Identities=19% Similarity=0.015 Sum_probs=28.2
Q ss_pred hHHHHHHHHhhhCCceeecC---CCccccChhhHHHHhc
Q psy9269 81 GLCMRELNGLSRYNLITMND---GFDILPTVTGSIMAKF 116 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~---~~~i~~T~lG~i~S~~ 116 (148)
.-+...++.|++.|++.... ...+.+|+.|+..-..
T Consensus 42 ~avSr~I~~LE~~~L~~R~~~~R~~~v~LT~~G~~l~~~ 80 (230)
T 3cta_A 42 QSASRIIIDLEKNGYITRTVTKRGQILNITEKGLDVLYT 80 (230)
T ss_dssp HHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCeEEEEECHHHHHHHHH
Confidence 45667888999999999872 1569999999977543
No 93
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=42.42 E-value=19 Score=24.87 Aligned_cols=32 Identities=13% Similarity=0.091 Sum_probs=25.2
Q ss_pred hHHHHHHHHhhhCCceeecCC-----CccccChhhHH
Q psy9269 81 GLCMRELNGLSRYNLITMNDG-----FDILPTVTGSI 112 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~-----~~i~~T~lG~i 112 (148)
..+...|+.|++.|+|+...+ -.+..|+.|+-
T Consensus 52 ~tls~~L~~Le~~GlI~r~~~~~d~~~~y~LT~~G~~ 88 (146)
T 2f2e_A 52 NILAARLRNLVEHGVMVAVPAESGSHQEYRLTDKGRA 88 (146)
T ss_dssp HHHHHHHHHHHHTTSEEEEECSSSSCEEEEECHHHHT
T ss_pred HHHHHHHHHHHHCCCEEEEecCCCCeEEEEECchHHH
Confidence 567788999999999987543 24788999974
No 94
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=41.30 E-value=13 Score=24.42 Aligned_cols=33 Identities=12% Similarity=0.130 Sum_probs=26.1
Q ss_pred hHHHHHHHHhhhCCceeecCC------CccccChhhHHH
Q psy9269 81 GLCMRELNGLSRYNLITMNDG------FDILPTVTGSIM 113 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~------~~i~~T~lG~i~ 113 (148)
..+...|+.|++.|+|+...+ -.+..|+.|+-+
T Consensus 51 ~tvs~~L~~Le~~GlI~r~~~~~d~r~~~~~LT~~G~~~ 89 (112)
T 1z7u_A 51 RVLTDRLREMEKDGLVHRESFNELPPRVEYTLTPEGYAL 89 (112)
T ss_dssp HHHHHHHHHHHHHTSEEEEEECCSSCEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECHhHHHH
Confidence 567788999999999986542 247899999854
No 95
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=38.97 E-value=14 Score=25.13 Aligned_cols=40 Identities=15% Similarity=0.177 Sum_probs=23.9
Q ss_pred hHHHHHHHHhhhCCceeecCCCccccChhhHHHHhcCCCHHHHH
Q psy9269 81 GLCMRELNGLSRYNLITMNDGFDILPTVTGSIMAKFCIGFNTMV 124 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~~~i~~T~lG~i~S~~YI~~~T~~ 124 (148)
.-|.++++.|++.|+|....+ +.+-|++.-.|.++|.=.+
T Consensus 66 ~~V~~~l~~Le~kGlI~~~~~----~~~~g~~~~~Ydl~pl~~k 105 (128)
T 2vn2_A 66 AECMEMVRRLLQKGMIAIEEH----TDEQGIRNEKYTLEPLWEK 105 (128)
T ss_dssp HHHHHHHHHHHHTTSSEECC--------------CEECHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEEeE----ECCCCcEEEEEehHHHHHH
Confidence 677889999999999998653 1123777777777765443
No 96
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=38.81 E-value=85 Score=20.92 Aligned_cols=25 Identities=12% Similarity=0.142 Sum_probs=20.6
Q ss_pred hHHHHHHHHhhhCCceeecCC-Cccc
Q psy9269 81 GLCMRELNGLSRYNLITMNDG-FDIL 105 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~-~~i~ 105 (148)
.-|.+++..|++.|+|...+. |.+.
T Consensus 50 ~tvr~Al~~L~~~Gli~~~~g~G~~V 75 (126)
T 3by6_A 50 NTVAKAYKELEAQKVIRTIPGKGTFI 75 (126)
T ss_dssp HHHHHHHHHHHHTTSEEEETTTEEEE
T ss_pred HHHHHHHHHHHHCCCEEEecCCeEEE
Confidence 567899999999999998876 5543
No 97
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=38.59 E-value=22 Score=25.88 Aligned_cols=35 Identities=9% Similarity=-0.008 Sum_probs=28.1
Q ss_pred hHHHHHHHHhhhCCceeecCC------CccccChhhHHHHh
Q psy9269 81 GLCMRELNGLSRYNLITMNDG------FDILPTVTGSIMAK 115 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~------~~i~~T~lG~i~S~ 115 (148)
.-+...++.|++.|+|....+ -.+..|+-|+.+..
T Consensus 77 stvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~ 117 (207)
T 2fxa_A 77 STAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVFW 117 (207)
T ss_dssp HHHHHHHHHHHHHTSEEEECC------CEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEecCCCCCceEEEEECHHHHHHHH
Confidence 566788999999999998654 25899999987754
No 98
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=37.53 E-value=24 Score=23.03 Aligned_cols=71 Identities=7% Similarity=-0.123 Sum_probs=45.0
Q ss_pred cccc-HHHHHHHHHHHHhCCcCCHHHHHHHHHhHHHHHHHhhCCCCCCCCCCCChHHHHHHHhhhhHhHHHHHHHHhhhC
Q psy9269 15 SSLH-RHLVEHLNSEIVLKTISDVSVAVEWLRSTFFFVRVLSNPGHYGFPAGLSSEELQSRLQGKNSGLCMRELNGLSRY 93 (148)
Q Consensus 15 S~L~-~~L~~~lnaeIa~g~i~s~~~~~~wl~~TFly~Rl~~nP~~Yg~~~~~~~~~~~~~l~~~~~~~v~~~l~~L~~~ 93 (148)
++|. ..+.-.|++.++.|. ..--+..+.|.. .+++. . .-+...|+.|++.
T Consensus 3 ~~~~~g~l~~~IL~~L~~~~-~~gyel~~~l~~------------~~~i~----~------------~tly~~L~~Le~~ 53 (108)
T 3l7w_A 3 YPVSALLIEYLILAIVSKHD-SYGYDISQTIKL------------IASIK----E------------STLYPILKKLEKA 53 (108)
T ss_dssp SCCCHHHHHHHHHHHHHHSC-EEHHHHHHHHTT------------TCCCC----H------------HHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHcCC-CcHHHHHHHHHH------------HhCCC----c------------ChHHHHHHHHHHC
Confidence 4454 456667777777664 344555555554 12222 1 4566888999999
Q ss_pred CceeecC---CC----ccccChhhHHHH
Q psy9269 94 NLITMND---GF----DILPTVTGSIMA 114 (148)
Q Consensus 94 ~lI~~~~---~~----~i~~T~lG~i~S 114 (148)
|+|+... ++ .+..|+.|+-.-
T Consensus 54 GlI~~~~~~~~~r~r~~y~LT~~G~~~l 81 (108)
T 3l7w_A 54 GYLSTYTQEHQGRRRKYYHLTDSGEKHL 81 (108)
T ss_dssp TSEEEEEEEETTEEEEEEEECHHHHHHH
T ss_pred CCeEEEeecCCCCcceEEEECHHHHHHH
Confidence 9998653 22 377899998653
No 99
>3bl4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 2.20A {Arthrobacter SP}
Probab=36.68 E-value=12 Score=25.81 Aligned_cols=34 Identities=24% Similarity=0.260 Sum_probs=22.3
Q ss_pred eccccHHHHHHHHHHHH----hCCcCCHHHHHHHHHhH
Q psy9269 14 ESSLHRHLVEHLNSEIV----LKTISDVSVAVEWLRST 47 (148)
Q Consensus 14 ES~L~~~L~~~lnaeIa----~g~i~s~~~~~~wl~~T 47 (148)
.|.+...+.+.+..--. .+..+|.+||+.||+.|
T Consensus 87 ~s~~~r~ia~~~l~~~~~~~pt~fF~te~eA~aWL~~~ 124 (124)
T 3bl4_A 87 SSPVDRVLANFFLGINAVPCPTKFFTSERDALTWLALT 124 (124)
T ss_dssp SSGGGHHHHHHHHHHHCCSSCEEEESCHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHhcCCCCCceeeCCHHHHHHHHHhC
Confidence 34455556666655422 24568999999999865
No 100
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=36.59 E-value=22 Score=23.62 Aligned_cols=77 Identities=9% Similarity=-0.046 Sum_probs=48.7
Q ss_pred eecccc-HHHHHHHHHHHHhCCcCCHHHHHHHHHhHHHHHHHhhCCCCCCCCCCCChHHHHHHHhhhhHhHHHHHHHHhh
Q psy9269 13 VESSLH-RHLVEHLNSEIVLKTISDVSVAVEWLRSTFFFVRVLSNPGHYGFPAGLSSEELQSRLQGKNSGLCMRELNGLS 91 (148)
Q Consensus 13 IES~L~-~~L~~~lnaeIa~g~i~s~~~~~~wl~~TFly~Rl~~nP~~Yg~~~~~~~~~~~~~l~~~~~~~v~~~l~~L~ 91 (148)
+.++|. ..+.-.|++.++.|. ..--++.+.+...+. ..+++. . ..+..+|+.|+
T Consensus 4 ~~~~~~~g~l~~~IL~~L~~~~-~~Gyei~~~l~~~~~--------~~~~i~----~------------gtly~~L~rLe 58 (116)
T 3f8b_A 4 IPKEMLRAQTNVILLNVLKQGD-NYVYGIIKQVKEASN--------GEMELN----E------------ATLYTIFKRLE 58 (116)
T ss_dssp -CHHHHHHHHHHHHHHHHHHCC-BCHHHHHHHHHHHTT--------TCCCCC----H------------HHHHHHHHHHH
T ss_pred cHHHHHhchHHHHHHHHHHhCC-CCHHHHHHHHHHHhC--------CCCCCC----c------------chHHHHHHHHH
Confidence 455665 456667788887765 455666666655431 112322 1 45668899999
Q ss_pred hCCceeecC----C----CccccChhhHHHH
Q psy9269 92 RYNLITMND----G----FDILPTVTGSIMA 114 (148)
Q Consensus 92 ~~~lI~~~~----~----~~i~~T~lG~i~S 114 (148)
+.|+|+... + -.+..|+.|+-.-
T Consensus 59 ~~GlI~~~~~~~~~~~~rk~Y~LT~~G~~~l 89 (116)
T 3f8b_A 59 KDGIISSYWGDESQGGRRKYYRLTEIGHENM 89 (116)
T ss_dssp HTTSEEEEEEC----CCEEEEEECHHHHHHH
T ss_pred HCCCEEEEeeccCCCCCceEEEECHHHHHHH
Confidence 999998642 1 2478999998653
No 101
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=36.57 E-value=14 Score=25.21 Aligned_cols=33 Identities=12% Similarity=0.118 Sum_probs=25.9
Q ss_pred hHHHHHHHHhhhCCceeecCC------CccccChhhHHH
Q psy9269 81 GLCMRELNGLSRYNLITMNDG------FDILPTVTGSIM 113 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~------~~i~~T~lG~i~ 113 (148)
..+...|+.|++.|+|+...+ -.+..|+.|+-.
T Consensus 64 ~tls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G~~l 102 (131)
T 1yyv_A 64 XMLAQSLQALEQDGFLNRVSYPVVPPHVEYSLTPLGEQV 102 (131)
T ss_dssp HHHHHHHHHHHHHTCEEEEEECSSSCEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHHCCcEEEEecCCCCCeEEEEECccHHHH
Confidence 567788999999999986532 248899999754
No 102
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=34.77 E-value=17 Score=21.62 Aligned_cols=21 Identities=19% Similarity=0.330 Sum_probs=13.7
Q ss_pred HHHHHhCCc--CCHHHHHHHHHh
Q psy9269 26 NSEIVLKTI--SDVSVAVEWLRS 46 (148)
Q Consensus 26 naeIa~g~i--~s~~~~~~wl~~ 46 (148)
-||.|+..- +.++.|++||.+
T Consensus 25 rae~Alk~Tg~~Gle~AmewL~k 47 (54)
T 2cos_A 25 MAGRALKQTGSRSIEAALEYISK 47 (54)
T ss_dssp HHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHhCcccHHHHHHHHHH
Confidence 344444332 559999999965
No 103
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=33.47 E-value=29 Score=22.93 Aligned_cols=32 Identities=16% Similarity=0.031 Sum_probs=23.9
Q ss_pred HHHHHHHhhhCCceeecC---C----CccccChhhHHHH
Q psy9269 83 CMRELNGLSRYNLITMND---G----FDILPTVTGSIMA 114 (148)
Q Consensus 83 v~~~l~~L~~~~lI~~~~---~----~~i~~T~lG~i~S 114 (148)
+...|+.|++.|+|+... + -.+..|+.|+-.-
T Consensus 52 ly~~L~~Le~~GlI~~~~~~~~~~~r~~Y~LT~~G~~~l 90 (118)
T 2esh_A 52 IYRVLADLEESGFLSTEWDTTVSPPRKIYRITPQGKLYL 90 (118)
T ss_dssp HHHHHHHHHHTTSEEEEEECSSSSCEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHCCCeEEEeecCCCCCceEEEEChHHHHHH
Confidence 457788999999997642 1 2478999998653
No 104
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=33.31 E-value=1.4e+02 Score=21.61 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=21.0
Q ss_pred hHHHHHHHHhhhCCceeecCC-Cccc
Q psy9269 81 GLCMRELNGLSRYNLITMNDG-FDIL 105 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~-~~i~ 105 (148)
.-|.+||..|+..|+|+..+. |.+.
T Consensus 46 ~tVReAL~~L~~eGlv~~~~g~G~~V 71 (239)
T 1hw1_A 46 TTLREVLQRLARDGWLTIQHGKPTKV 71 (239)
T ss_dssp HHHHHHHHHHHHTTSEEEETTEEEEE
T ss_pred HHHHHHHHHHHHCCcEEEecCCCcEe
Confidence 668899999999999998876 5544
No 105
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=33.01 E-value=22 Score=23.08 Aligned_cols=35 Identities=11% Similarity=-0.051 Sum_probs=26.7
Q ss_pred hHHHHHHHHhhhCCceeecCCC----ccccChhhHHHHh
Q psy9269 81 GLCMRELNGLSRYNLITMNDGF----DILPTVTGSIMAK 115 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~~----~i~~T~lG~i~S~ 115 (148)
.-|...++.|++.|+|....++ .+..|+-|+....
T Consensus 43 ~tv~~~l~~L~~~Glv~r~~~~rr~~~~~lT~~g~~~~~ 81 (123)
T 1okr_A 43 KTIRTLITRLYKKGFIDRKKDNKIFQYYSLVEESDIKYK 81 (123)
T ss_dssp HHHHHHHHHHHHHTSEEEEEETTEEEEEESSCHHHHHHH
T ss_pred hhHHHHHHHHHHCCCeEEEecCCeEEEEEecCHHHHHHH
Confidence 5667889999999999876542 2678999986643
No 106
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=32.61 E-value=15 Score=25.71 Aligned_cols=36 Identities=17% Similarity=0.109 Sum_probs=27.2
Q ss_pred hHHHHHHHHhhhCCceeecCC------CccccChhhHHHHhc
Q psy9269 81 GLCMRELNGLSRYNLITMNDG------FDILPTVTGSIMAKF 116 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~------~~i~~T~lG~i~S~~ 116 (148)
.-|...++.|++.|+|+...+ -.+.+|+.|+.+..-
T Consensus 101 ~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~~~ 142 (181)
T 2fbk_A 101 PSTSNRIVRLLEKGLIERREDERDRRSASIRLTPQGRALVTH 142 (181)
T ss_dssp GGGSSHHHHHHHHTSEECCC-------CCBEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCEEecCCCCCCCeeEEEECHHHHHHHHH
Confidence 345568889999999987643 248899999987654
No 107
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=31.61 E-value=33 Score=20.41 Aligned_cols=25 Identities=8% Similarity=-0.125 Sum_probs=18.9
Q ss_pred hHHHHHHHHhhhCCceeecCCCccc
Q psy9269 81 GLCMRELNGLSRYNLITMNDGFDIL 105 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~~~i~ 105 (148)
..|...+..|++.|+|.....|.+.
T Consensus 40 ~tv~~~l~~L~~~G~I~~~~~G~y~ 64 (67)
T 2heo_A 40 KTLNQVLYRLKKEDRVSSPSPKYWS 64 (67)
T ss_dssp HHHHHHHHHHHHTTSEEEEETTEEE
T ss_pred HHHHHHHHHHHHCCcEecCCCceEe
Confidence 6788999999999998764434443
No 108
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=30.34 E-value=33 Score=24.94 Aligned_cols=47 Identities=15% Similarity=0.171 Sum_probs=29.8
Q ss_pred CChHHHHHHHhhhhHhHHHHHHHHhhhCCceeecCCCccccChhhHHHH
Q psy9269 66 LSSEELQSRLQGKNSGLCMRELNGLSRYNLITMNDGFDILPTVTGSIMA 114 (148)
Q Consensus 66 ~~~~~~~~~l~~~~~~~v~~~l~~L~~~~lI~~~~~~~i~~T~lG~i~S 114 (148)
.+.+.+...+. .-.+-+.+++..|++.|+|+.+. +.+...+..++..
T Consensus 194 lt~~~lA~~lG-~sr~tvsR~l~~L~~~GlI~~~~-~~i~I~d~~~L~~ 240 (243)
T 3la7_A 194 LSHQAIAEAIG-STRVTVTRLLGDLREKKMISIHK-KKITVHKPVTLSR 240 (243)
T ss_dssp CCHHHHHHHHT-CCHHHHHHHHHHHHHTTSEEEET-TEEEECC------
T ss_pred CCHHHHHHHHC-CcHHHHHHHHHHHHHCCCEEEcC-CEEEECCHHHHHh
Confidence 45556655443 33467788999999999999887 6677666655543
No 109
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=30.21 E-value=53 Score=19.73 Aligned_cols=24 Identities=17% Similarity=0.264 Sum_probs=18.0
Q ss_pred HHHHHHHHHhCCcCCHHHHHHHHHh
Q psy9269 22 VEHLNSEIVLKTISDVSVAVEWLRS 46 (148)
Q Consensus 22 ~~~lnaeIa~g~i~s~~~~~~wl~~ 46 (148)
....-|..+.|+ .+++.|++||-.
T Consensus 24 ~~a~~AL~~t~n-~~~e~A~~wL~~ 47 (64)
T 2crn_A 24 HTALKALAATGR-KTAEEALAWLHD 47 (64)
T ss_dssp HHHHHHHHHHTS-CCHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CCHHHHHHHHHh
Confidence 445667777776 699999999943
No 110
>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa}
Probab=30.02 E-value=66 Score=20.61 Aligned_cols=31 Identities=6% Similarity=0.169 Sum_probs=26.3
Q ss_pred ccHHHHHHHHHHHHhCCcCCHHHHHHHHHhHHH
Q psy9269 17 LHRHLVEHLNSEIVLKTISDVSVAVEWLRSTFF 49 (148)
Q Consensus 17 L~~~L~~~lnaeIa~g~i~s~~~~~~wl~~TFl 49 (148)
+...|+..|-..|..| +|-+++++|+..-|-
T Consensus 44 iA~dlR~~V~~~l~~G--~sd~eI~~~~v~RYG 74 (84)
T 2hl7_A 44 IAADLRKQIYGQLQQG--KSDGEIVDYMVARYG 74 (84)
T ss_dssp HHHHHHHHHHHHHHHT--CCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcC--CCHHHHHHHHHHhcC
Confidence 3467999999999999 599999999988764
No 111
>2dql_A PEX protein; circadian clock associated protein, circadian clock protein; 1.70A {Anabaena SP}
Probab=29.82 E-value=34 Score=22.67 Aligned_cols=73 Identities=11% Similarity=-0.055 Sum_probs=44.4
Q ss_pred cccHHHHHH-HHHHHHhCCcCCHHHHHHHHHhHHHHHHHhhCCCCCCCCCCCChHHHHHHHhhhhHhHHHHHHHHhhhCC
Q psy9269 16 SLHRHLVEH-LNSEIVLKTISDVSVAVEWLRSTFFFVRVLSNPGHYGFPAGLSSEELQSRLQGKNSGLCMRELNGLSRYN 94 (148)
Q Consensus 16 ~L~~~L~~~-lnaeIa~g~i~s~~~~~~wl~~TFly~Rl~~nP~~Yg~~~~~~~~~~~~~l~~~~~~~v~~~l~~L~~~~ 94 (148)
.|...+.-. |++.+..|. ..--++.+.+...+ ..+++. . ..+..+|+.|++.|
T Consensus 17 ~l~~~l~~~~IL~lL~~~~-~~Gyei~~~l~~~~---------~~~~is----~------------gtLY~~L~rLe~~G 70 (115)
T 2dql_A 17 YLCQEVAICYILYVLLQGE-SYGTELIQQLETEH---------PTYRLS----D------------TVLYSAIKFLEDNR 70 (115)
T ss_dssp ECCHHHHHHHHHHHHTTSC-BCHHHHHHHHHHHC---------TTEECC----H------------HHHHHHHHHHHHTT
T ss_pred hhhhhHHHHHHHHHHHhCC-CCHHHHHHHHHHHc---------CCCCCC----c------------chHHHHHHHHHHCC
Confidence 344556655 777777654 34455555555432 112222 1 45668899999999
Q ss_pred ceeecC-----C----CccccChhhHHHH
Q psy9269 95 LITMND-----G----FDILPTVTGSIMA 114 (148)
Q Consensus 95 lI~~~~-----~----~~i~~T~lG~i~S 114 (148)
+|+... + -.+..|+.|+-.-
T Consensus 71 lI~~~~~~~~~~~~~rk~Y~LT~~G~~~l 99 (115)
T 2dql_A 71 AITGYWKKLEGRGRPRRMYQVSPEWQHQA 99 (115)
T ss_dssp SEEEEEECCTTCSSCEEEEEECGGGHHHH
T ss_pred CEEEEeeecCCCCCCcEEEEECHHHHHHH
Confidence 998641 1 2388999999654
No 112
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=29.79 E-value=26 Score=22.33 Aligned_cols=31 Identities=13% Similarity=-0.035 Sum_probs=23.2
Q ss_pred hHHHHHHHHhhhCCceeecCCC---ccccChhhH
Q psy9269 81 GLCMRELNGLSRYNLITMNDGF---DILPTVTGS 111 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~~---~i~~T~lG~ 111 (148)
.-+...++.|++.|+|....+| .+..|+-|.
T Consensus 49 ~tv~~~l~~L~~~gli~~~~~gr~~~y~l~~~~~ 82 (114)
T 2oqg_A 49 QAIAKHLNALQACGLVESVKVGREIRYRALGAEL 82 (114)
T ss_dssp HHHHHHHHHHHHTTSEEEEEETTEEEEEECSHHH
T ss_pred HHHHHHHHHHHHCCCeeEEecCCEEEEEechHHH
Confidence 4577889999999999875433 267777775
No 113
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=29.31 E-value=30 Score=18.78 Aligned_cols=17 Identities=24% Similarity=0.274 Sum_probs=13.1
Q ss_pred HHHHHHhHHHHHHHhhC
Q psy9269 40 AVEWLRSTFFFVRVLSN 56 (148)
Q Consensus 40 ~~~wl~~TFly~Rl~~n 56 (148)
+.-.|-.||+|.|-++.
T Consensus 19 if~~lg~tflywrgrrh 35 (40)
T 2l9u_A 19 IFMMLGGTFLYWRGRRH 35 (40)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHhCceeEEEccccc
Confidence 34568899999998764
No 114
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=28.85 E-value=40 Score=23.40 Aligned_cols=34 Identities=15% Similarity=-0.019 Sum_probs=25.7
Q ss_pred hHHHHHHHHhhhCCceeecC-----C---CccccChhhHHHH
Q psy9269 81 GLCMRELNGLSRYNLITMND-----G---FDILPTVTGSIMA 114 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~-----~---~~i~~T~lG~i~S 114 (148)
..+...|+.|++.|+|+... + -.+..|+.|+-.-
T Consensus 77 gtLy~~L~rLE~~GlI~~~~~~~~~~~~rk~Y~LT~~G~~~l 118 (145)
T 1xma_A 77 TTLYSAFARLEKNGYIKSYYGEETQGKRRTYYRITPEGIKYY 118 (145)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEEEC--CEEEEEEECHHHHHHH
T ss_pred hHHHHHHHHHHHCCCEEEEEeccCCCCCeEEEEECHHHHHHH
Confidence 45668899999999997642 1 2478999999664
No 115
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=28.41 E-value=42 Score=22.31 Aligned_cols=69 Identities=13% Similarity=-0.003 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhCCcCCHHHHHHHHHhHHHHHHHhhCCCCCCCCCCCChHHHHHHHhhhhHhHHHHHHHHhhhCCceee
Q psy9269 19 RHLVEHLNSEIVLKTISDVSVAVEWLRSTFFFVRVLSNPGHYGFPAGLSSEELQSRLQGKNSGLCMRELNGLSRYNLITM 98 (148)
Q Consensus 19 ~~L~~~lnaeIa~g~i~s~~~~~~wl~~TFly~Rl~~nP~~Yg~~~~~~~~~~~~~l~~~~~~~v~~~l~~L~~~~lI~~ 98 (148)
..|.-.|++.++.|. ..--++.+.+... ..+++. . ..+..+|+.|++.|+|+.
T Consensus 10 g~l~~~IL~lL~~~p-~~Gyei~~~l~~~----------g~~~is----~------------gtlY~~L~rLe~~GlI~~ 62 (117)
T 4esf_A 10 GSLEGCVLEIISRRE-TYGYEITRHLNDL----------GFTEVV----E------------GTVYTILVRLEKKKLVNI 62 (117)
T ss_dssp HHHHHHHHHHHHHSC-BCHHHHHHHHHHH----------TCTTCC----H------------HHHHHHHHHHHHTTCEEE
T ss_pred ChHHHHHHHHHHcCC-CCHHHHHHHHHHc----------CCCCCC----c------------cHHHHHHHHHHHCCCEEE
Confidence 456667778777665 4556666666542 112222 1 456788999999999986
Q ss_pred cC----C----CccccChhhHHHH
Q psy9269 99 ND----G----FDILPTVTGSIMA 114 (148)
Q Consensus 99 ~~----~----~~i~~T~lG~i~S 114 (148)
.. + -.+..|+.|+-.-
T Consensus 63 ~~~~~~~g~~rk~Y~LT~~G~~~l 86 (117)
T 4esf_A 63 EKKPSDMGPPRKFYSLNEAGRQEL 86 (117)
T ss_dssp EEEC-----CEEEEEECHHHHHHH
T ss_pred EeecCCCCCCceEEEECHHHHHHH
Confidence 42 1 2478899998664
No 116
>4a17_D L21, RPL11, 60S ribosomal protein L11; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_D 4a1c_D 4a1e_D
Probab=28.37 E-value=29 Score=25.40 Aligned_cols=14 Identities=14% Similarity=0.646 Sum_probs=12.5
Q ss_pred CCHHHHHHHHHhHH
Q psy9269 35 SDVSVAVEWLRSTF 48 (148)
Q Consensus 35 ~s~~~~~~wl~~TF 48 (148)
-+.+||+.|++..|
T Consensus 154 v~keea~~~~~~~~ 167 (172)
T 4a17_D 154 ISKEECINWFKTEF 167 (172)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred eCHHHHHHHHHHhc
Confidence 38999999999987
No 117
>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2
Probab=28.34 E-value=26 Score=28.83 Aligned_cols=30 Identities=20% Similarity=0.390 Sum_probs=24.7
Q ss_pred HHHHHhhhCCceeecCCCccccChhhHHHHh
Q psy9269 85 RELNGLSRYNLITMNDGFDILPTVTGSIMAK 115 (148)
Q Consensus 85 ~~l~~L~~~~lI~~~~~~~i~~T~lG~i~S~ 115 (148)
..+..|.+.|+++.++ +.+.+|+.|+..+.
T Consensus 405 ~~l~~~~~~gll~~~~-~~~~lT~~G~~~~~ 434 (457)
T 1olt_A 405 KLLAPLAKDGLVDVDE-KGIQVTAKGRLLIR 434 (457)
T ss_dssp HHHHHHHHTTSEEECS-SEEEECTTTGGGHH
T ss_pred HHHHHHHHCCCEEEEC-CEEEECHhhHHHHH
Confidence 3467899999999877 68999999996653
No 118
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=28.01 E-value=37 Score=22.59 Aligned_cols=69 Identities=14% Similarity=-0.021 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHhCCcCCHHHHHHHHHhHHHHHHHhhCCCCCCCCCCCChHHHHHHHhhhhHhHHHHHHHHhhhCCceee
Q psy9269 19 RHLVEHLNSEIVLKTISDVSVAVEWLRSTFFFVRVLSNPGHYGFPAGLSSEELQSRLQGKNSGLCMRELNGLSRYNLITM 98 (148)
Q Consensus 19 ~~L~~~lnaeIa~g~i~s~~~~~~wl~~TFly~Rl~~nP~~Yg~~~~~~~~~~~~~l~~~~~~~v~~~l~~L~~~~lI~~ 98 (148)
..+.-.|++.++.|. ..--++.+.+.. . ..+++. . ..+..+|+.|++.|+|+.
T Consensus 12 g~l~~~IL~lL~~~p-~~Gyei~~~l~~-~---------g~~~is----~------------gtlY~~L~rLe~~GlI~~ 64 (116)
T 3hhh_A 12 GILEGLVLAIIQRKE-TYGYEITKILND-Q---------GFTEIV----E------------GTVYTILLRLEKNQWVIA 64 (116)
T ss_dssp THHHHHHHHHHHHSC-BCHHHHHHHHHT-T---------SCSSCC----H------------HHHHHHHHHHHHTTSEEE
T ss_pred hhHHHHHHHHHhcCC-CCHHHHHHHHHH-c---------CCCCCC----c------------cHHHHHHHHHHHCCCEEE
Confidence 346667777777665 344466665554 1 122222 1 456688999999999986
Q ss_pred cC----C----CccccChhhHHHH
Q psy9269 99 ND----G----FDILPTVTGSIMA 114 (148)
Q Consensus 99 ~~----~----~~i~~T~lG~i~S 114 (148)
.. + -.+..|+.|+-.-
T Consensus 65 ~~~~~~~g~~rk~Y~lT~~G~~~l 88 (116)
T 3hhh_A 65 EKKPSEKGPMRKFYRLTSSGEAEL 88 (116)
T ss_dssp EEEECC--CEEEEEEECHHHHHHH
T ss_pred EeeecCCCCCceEEEECHHHHHHH
Confidence 42 1 2478999998654
No 119
>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga maritima} PDB: 2gaj_A*
Probab=27.66 E-value=93 Score=27.05 Aligned_cols=52 Identities=15% Similarity=0.214 Sum_probs=35.4
Q ss_pred HHHHHhhhCCceeecCCCccccChhhHHHHhc-------CCCHHHHHhc--------cCCCCHHHHHH
Q psy9269 85 RELNGLSRYNLITMNDGFDILPTVTGSIMAKF-------CIGFNTMVAF--------TGWEKAQKDLA 137 (148)
Q Consensus 85 ~~l~~L~~~~lI~~~~~~~i~~T~lG~i~S~~-------YI~~~T~~~~--------~~~~s~~~lL~ 137 (148)
..|..|.+-|.|..++ ..+.||++|+.+-.+ .++|+--..+ .+..+..++|.
T Consensus 467 ~iI~~L~~R~Yv~~~~-k~l~pT~~G~~l~~~l~~~~~~l~~~~~Ta~~E~~L~~I~~G~~~~~~~l~ 533 (633)
T 2gai_A 467 STIKLLLNRGYIKKIR-GYLYPTIVGSVVMDYLEKKYSDVVSVSFTAEMEKDLDEVEQGKKTDKIVLR 533 (633)
T ss_dssp HHHHHHHHTTSEEEET-TEEEEBHHHHHHHHHHHHHSTTTTSHHHHHHHHHHHHHHHTTSSCHHHHHH
T ss_pred HHHHHHhhcCcEEEcC-CEEEEChhHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHcCCcCHHHHHH
Confidence 3566788889999876 579999999988754 3455544444 34455555554
No 120
>3ri2_A Transcriptional regulator, PADR-like family; PSI-biology, midwest center for structural genomics, MCSG, transcription regulator; 2.10A {Eggerthella lenta} PDB: 4ejo_A
Probab=26.83 E-value=51 Score=22.24 Aligned_cols=35 Identities=11% Similarity=-0.034 Sum_probs=26.2
Q ss_pred hHHHHHHHHhhhCCceeecCC-------CccccChhhHHHHh
Q psy9269 81 GLCMRELNGLSRYNLITMNDG-------FDILPTVTGSIMAK 115 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~-------~~i~~T~lG~i~S~ 115 (148)
..+..+|+.|++.|+|+.... -.+..|+.|+-.-.
T Consensus 53 gtlY~~L~rLe~~GlI~~~~~~~~~~~rk~Y~LT~~Gr~~l~ 94 (123)
T 3ri2_A 53 NTLYPLMRRLESQGLLASEWDNGGSKPRKYYRTTDEGLRVLR 94 (123)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEECSSCEEEEEEECHHHHHHHH
T ss_pred chHHHHHHHHHHCCCEEEEeccCCCCCceEEEECHHHHHHHH
Confidence 456688999999999986521 24789999986643
No 121
>2fq3_A Transcription regulatory protein SWI3; four-helix bundle; 1.40A {Saccharomyces cerevisiae} SCOP: a.4.1.18
Probab=26.39 E-value=23 Score=23.80 Aligned_cols=52 Identities=17% Similarity=0.281 Sum_probs=31.4
Q ss_pred HHHHHHHHHhHHHHHHHhhCCCCCCCCCCCChHHHHHHHhhhhHhHHHHHHHHhhhCCceeec
Q psy9269 37 VSVAVEWLRSTFFFVRVLSNPGHYGFPAGLSSEELQSRLQGKNSGLCMRELNGLSRYNLITMN 99 (148)
Q Consensus 37 ~~~~~~wl~~TFly~Rl~~nP~~Yg~~~~~~~~~~~~~l~~~~~~~v~~~l~~L~~~~lI~~~ 99 (148)
.-+..+++=.+|- .||.-|- +.++....|.+ -...+.++..+|+.+|+|-+.
T Consensus 49 Yl~iRN~iI~~yr-----~nP~~yL-----T~t~~r~~l~g-Dv~~i~RVh~FLe~wGLIN~~ 100 (104)
T 2fq3_A 49 YMRYRNFMVNSYR-----LNPNEYF-----SVTTARRNVSG-DAAALFRLHKFLTKWGLINYQ 100 (104)
T ss_dssp HHHHHHHHHHHHH-----HCTTSCC-----CHHHHHHHSCS-CHHHHHHHHHHHHHTTSSSSC
T ss_pred HHHHHHHHHHHHH-----hCCceee-----eHHHHHHHccc-cHHHHHHHHHHHHHcCeeccC
Confidence 4455566666652 6898763 23333322321 125677889999999999753
No 122
>2rkh_A Putative APHA-like transcription factor; ZP_00208345.1, STRU genomics, joint center for structural genomics, JCSG; 2.00A {Magnetospirillum magnetotacticum}
Probab=26.11 E-value=23 Score=25.89 Aligned_cols=29 Identities=17% Similarity=0.132 Sum_probs=22.2
Q ss_pred HHHHhhhCCceeecC-C------CccccChhhHHHH
Q psy9269 86 ELNGLSRYNLITMND-G------FDILPTVTGSIMA 114 (148)
Q Consensus 86 ~l~~L~~~~lI~~~~-~------~~i~~T~lG~i~S 114 (148)
+++.|++.|+|+..+ + ..+..|+-|+..=
T Consensus 54 ~l~~Le~~GlI~~~~~~~~rpektvY~ITe~Gr~~l 89 (180)
T 2rkh_A 54 SIELLRYEGLVEAVDDGQGMEDDAMLAISAAGRREL 89 (180)
T ss_dssp CTHHHHHTTSEECCC--------CEEEECHHHHHHH
T ss_pred HHHHHHHCCCeeeeecCCCCCccceeeeCHHHHHHH
Confidence 567899999997655 2 4589999999653
No 123
>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR {Escherichia coli}
Probab=26.01 E-value=85 Score=20.42 Aligned_cols=32 Identities=6% Similarity=0.069 Sum_probs=27.0
Q ss_pred ccHHHHHHHHHHHHhCCcCCHHHHHHHHHhHHHH
Q psy9269 17 LHRHLVEHLNSEIVLKTISDVSVAVEWLRSTFFF 50 (148)
Q Consensus 17 L~~~L~~~lnaeIa~g~i~s~~~~~~wl~~TFly 50 (148)
+...|+..|-..|..| +|-+++++|+..-|--
T Consensus 41 iA~dlR~~Vre~l~~G--~Sd~eI~~~mv~RYGd 72 (90)
T 2kw0_A 41 IATDLRQKVYELMQEG--KSKKEIVDYMVARYGN 72 (90)
T ss_dssp HHHHHHHHHHHHHHHT--CCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcC--CCHHHHHHHHHHhcCC
Confidence 3467999999999999 5999999999988753
No 124
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=25.76 E-value=31 Score=26.22 Aligned_cols=34 Identities=18% Similarity=0.090 Sum_probs=26.8
Q ss_pred hHHHHHHHHhhhCCceeecCC------CccccChhhHHHH
Q psy9269 81 GLCMRELNGLSRYNLITMNDG------FDILPTVTGSIMA 114 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~------~~i~~T~lG~i~S 114 (148)
.-+...++.|++.|+|....+ -.+..|+-|+-.-
T Consensus 189 ~tvt~~v~rLe~~GlV~R~~~~~DrR~~~i~LT~~G~~~~ 228 (250)
T 1p4x_A 189 PQTVRALNNLKKQGYLIKERSTEDERKILIHMDDAQQDHA 228 (250)
T ss_dssp HHHHHHHHHHHHHTSSEEEECSSSTTCEEEECCHHHHHHH
T ss_pred hhHHHHHHHHHHCCCEEeeCCCCCCCeEEEEECHHHHHHH
Confidence 456678999999999997653 2489999998653
No 125
>3j21_E 50S ribosomal protein L5P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=25.55 E-value=30 Score=25.66 Aligned_cols=14 Identities=7% Similarity=0.169 Sum_probs=12.4
Q ss_pred CCHHHHHHHHHhHH
Q psy9269 35 SDVSVAVEWLRSTF 48 (148)
Q Consensus 35 ~s~~~~~~wl~~TF 48 (148)
-+.+||+.|++..|
T Consensus 166 v~keea~~~~~~~~ 179 (186)
T 3j21_E 166 LTKEEGMVYMMEEF 179 (186)
T ss_dssp CCHHHHHHHHHHHS
T ss_pred eCHHHHHHHHHHHc
Confidence 38999999999886
No 126
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.45 E-value=72 Score=17.56 Aligned_cols=21 Identities=14% Similarity=0.181 Sum_probs=14.9
Q ss_pred HHHHHHHHHhCCcCCHHHHHHHHH
Q psy9269 22 VEHLNSEIVLKTISDVSVAVEWLR 45 (148)
Q Consensus 22 ~~~lnaeIa~g~i~s~~~~~~wl~ 45 (148)
.....|..+.| +++.|++||-
T Consensus 24 ~~a~~AL~~~~---n~e~A~~~L~ 44 (47)
T 2ekk_A 24 EHAMEALLNTS---TMEQATEYLL 44 (47)
T ss_dssp HHHHHHHHHSC---SHHHHHHHHH
T ss_pred HHHHHHHHHcC---CHHHHHHHHH
Confidence 34455666664 8999999984
No 127
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=24.75 E-value=39 Score=22.37 Aligned_cols=74 Identities=15% Similarity=-0.120 Sum_probs=46.4
Q ss_pred cccc-HHHHHHHHHHHHhCCcCCHHHHHHHHHhHHHHHHHhhCCCCCCCCCCCChHHHHHHHhhhhHhHHHHHHHHhhhC
Q psy9269 15 SSLH-RHLVEHLNSEIVLKTISDVSVAVEWLRSTFFFVRVLSNPGHYGFPAGLSSEELQSRLQGKNSGLCMRELNGLSRY 93 (148)
Q Consensus 15 S~L~-~~L~~~lnaeIa~g~i~s~~~~~~wl~~TFly~Rl~~nP~~Yg~~~~~~~~~~~~~l~~~~~~~v~~~l~~L~~~ 93 (148)
++|. ..+.-.|++.++.|. ..--++.+.+.. . ..+.+. . ..+..+|+.|++.
T Consensus 3 ~~l~~g~l~~~IL~~L~~~~-~~Gyei~~~l~~-~---------~~~~is----~------------gtlY~~L~rLe~~ 55 (115)
T 4esb_A 3 SQMLKGVLEGCILYIISQEE-VYGYELSTKLNK-H---------GFTFVS----E------------GSIYPLLLRMQKE 55 (115)
T ss_dssp CTTTTTTHHHHHHHHHHHSC-EEHHHHHHHHHH-T---------TCTTCC----H------------HHHHHHHHHHHHT
T ss_pred chhhhCHHHHHHHHHHHcCC-CCHHHHHHHHHH-c---------CCCCCC----c------------ChHHHHHHHHHHC
Confidence 3444 456677788777665 355566665554 1 122222 1 4566889999999
Q ss_pred CceeecC----CC----ccccChhhHHHHh
Q psy9269 94 NLITMND----GF----DILPTVTGSIMAK 115 (148)
Q Consensus 94 ~lI~~~~----~~----~i~~T~lG~i~S~ 115 (148)
|+|+... ++ .+..|+.|+-.-.
T Consensus 56 GlI~~~~~~~~~g~~rk~Y~LT~~G~~~l~ 85 (115)
T 4esb_A 56 KLIEGTLKASSLGPKRKYYHITDKGLEQLE 85 (115)
T ss_dssp TSEEEEEEECTTSCEEEEEEECHHHHHHHH
T ss_pred CCeEEEeeecCCCCCcEEEEECHHHHHHHH
Confidence 9998642 12 3789999986543
No 128
>1i7d_A DNA topoisomerase III; decatenating enzyme, protein-DNA complex, single-stranded DNA, isomerase/DNA complex; HET: DNA; 2.05A {Escherichia coli} SCOP: e.10.1.1 PDB: 2o5c_A* 2o54_A* 2o59_A* 2o19_A* 2o5e_A* 1d6m_A*
Probab=24.48 E-value=53 Score=28.76 Aligned_cols=33 Identities=15% Similarity=0.020 Sum_probs=26.2
Q ss_pred HHHHHhhhCCceeecCCCccccChhhHHHHhcCC
Q psy9269 85 RELNGLSRYNLITMNDGFDILPTVTGSIMAKFCI 118 (148)
Q Consensus 85 ~~l~~L~~~~lI~~~~~~~i~~T~lG~i~S~~YI 118 (148)
..|..|.+.|.|..++ ..+.||++|+.+-..+-
T Consensus 530 ~iIe~L~~R~Yv~~~~-k~l~pT~~G~~l~~~l~ 562 (659)
T 1i7d_A 530 GIIELLFKRGFLTKKG-RYIHSTDAGKALFHSLP 562 (659)
T ss_dssp HHHHHHHHTTSEEESS-SEEEECHHHHHHHHHSC
T ss_pred HHHHHHHhCCcEeecC-CEEeECHHHHHHHHHHH
Confidence 3455688889999876 57999999998887763
No 129
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=24.44 E-value=48 Score=20.31 Aligned_cols=31 Identities=10% Similarity=-0.055 Sum_probs=22.5
Q ss_pred hHHHHHHHHhhhCCceeecCCC---ccccChhhH
Q psy9269 81 GLCMRELNGLSRYNLITMNDGF---DILPTVTGS 111 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~~---~i~~T~lG~ 111 (148)
.-+...++.|++.|+|....++ .+..|+-|.
T Consensus 53 ~tvs~~l~~L~~~glv~~~~~~r~~~y~l~~~~~ 86 (99)
T 3cuo_A 53 SATSQHLARMRDEGLIDSQRDAQRILYSIKNEAV 86 (99)
T ss_dssp HHHHHHHHHHHHTTSEEEEECSSCEEEEECCHHH
T ss_pred HHHHHHHHHHHHCCCEEEEecCCEEEEEEChHHH
Confidence 5677889999999999876542 355666553
No 130
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=23.93 E-value=2e+02 Score=21.07 Aligned_cols=23 Identities=17% Similarity=-0.005 Sum_probs=19.2
Q ss_pred hHHHHHHHHhhhCCceeecCC-Cc
Q psy9269 81 GLCMRELNGLSRYNLITMNDG-FD 103 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~-~~ 103 (148)
.-|.+|+..|++.|+|..... |.
T Consensus 44 ~tvr~Al~~L~~~g~i~~~~g~G~ 67 (239)
T 3bwg_A 44 STITKSLELLEQKGAIFQVRGSGI 67 (239)
T ss_dssp HHHHHHHHHHHHTTSEEEETTTEE
T ss_pred HHHHHHHHHHHHCCcEEEeCCceE
Confidence 578899999999999997765 44
No 131
>2zfw_A PEX; five alpha-helices + one beta-sheet, circadian clock protein; 2.90A {Synechococcus SP}
Probab=23.86 E-value=39 Score=23.75 Aligned_cols=33 Identities=9% Similarity=-0.182 Sum_probs=25.1
Q ss_pred hHHHHHHHHhhhCCceeecCC---------CccccChhhHHH
Q psy9269 81 GLCMRELNGLSRYNLITMNDG---------FDILPTVTGSIM 113 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~---------~~i~~T~lG~i~ 113 (148)
..+..+|+.|++.|+|+.... -.+..|+.|+-.
T Consensus 79 gtLYp~L~rLE~~GlI~~~~~~~~~~g~~rk~Y~LT~~Gr~~ 120 (148)
T 2zfw_A 79 TVLYTALKFLEDEQIISGYWKKVEGRGRPRRMYQLAQANDDR 120 (148)
T ss_dssp HHHHHHHHHHHHTSSEEEECCCCTTSSCCCCEEEESSSSCST
T ss_pred hHHHHHHHHHHHCCCEEEEeeccCCCCCCcEEEEECHHHHHH
Confidence 466788999999999986421 237889999854
No 132
>2job_A Antilipopolysaccharide factor; ALF, lipid A binding protein, endotoxin, lipid binding protein; NMR {Penaeus monodon}
Probab=23.84 E-value=96 Score=20.70 Aligned_cols=27 Identities=19% Similarity=0.282 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhCCcCCHHHHHHHHHh
Q psy9269 19 RHLVEHLNSEIVLKTISDVSVAVEWLRS 46 (148)
Q Consensus 19 ~~L~~~lnaeIa~g~i~s~~~~~~wl~~ 46 (148)
...+|++.-.+..|-| +.+||-.||.+
T Consensus 76 ~a~rDFV~KA~~~gLi-T~edA~~wL~~ 102 (102)
T 2job_A 76 KTAKDFVRKAFQKGLI-SQQEANQWLSS 102 (102)
T ss_dssp HHHHHHHHHHHHHTCS-CHHHHHHHHHC
T ss_pred hHHHHHHHHHHHcCCc-cHHHHHHHhhC
Confidence 5789999999999976 89999999963
No 133
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=23.63 E-value=1.2e+02 Score=19.03 Aligned_cols=21 Identities=19% Similarity=0.177 Sum_probs=18.0
Q ss_pred hHHHHHHHHhhhCCceeecCC
Q psy9269 81 GLCMRELNGLSRYNLITMNDG 101 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~ 101 (148)
.-|..++..|++.|+|.....
T Consensus 50 ~tvr~al~~L~~~Gli~~~~g 70 (102)
T 1v4r_A 50 KTVSRALAVLKSEGLVSSRGA 70 (102)
T ss_dssp THHHHHTTTTTTSSCCEEETT
T ss_pred HHHHHHHHHHHHCCCEEEeCC
Confidence 567899999999999987764
No 134
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=23.57 E-value=34 Score=25.95 Aligned_cols=33 Identities=9% Similarity=-0.062 Sum_probs=25.2
Q ss_pred hHHHHHHHHhhhCCceeecCC------CccccChhhHHH
Q psy9269 81 GLCMRELNGLSRYNLITMNDG------FDILPTVTGSIM 113 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~------~~i~~T~lG~i~ 113 (148)
.-+-..++.|++.|+|....+ -.+..|+-|+-.
T Consensus 65 ~t~t~~l~rLe~~G~i~R~~~~~DrR~~~i~LT~~G~~~ 103 (250)
T 1p4x_A 65 SDLVQHIKVLVKHSYISKVRSKIDERNTYISISEEQREK 103 (250)
T ss_dssp GGTHHHHHHHHHTTSCEEEECSSSTTSEEEECCHHHHHH
T ss_pred hhHHHHHHHHHHCCCEEecCCCCCCCeEEEEECHHHHHH
Confidence 344568999999999987543 248899999873
No 135
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=23.42 E-value=32 Score=22.95 Aligned_cols=81 Identities=11% Similarity=-0.007 Sum_probs=52.1
Q ss_pred Cceecccc-HHHHHHHHHHHHhCCcCCHHHHHHHHHhHHHHHHHhhCCCCCCCCCCCChHHHHHHHhhhhHhHHHHHHHH
Q psy9269 11 EPVESSLH-RHLVEHLNSEIVLKTISDVSVAVEWLRSTFFFVRVLSNPGHYGFPAGLSSEELQSRLQGKNSGLCMRELNG 89 (148)
Q Consensus 11 ~pIES~L~-~~L~~~lnaeIa~g~i~s~~~~~~wl~~TFly~Rl~~nP~~Yg~~~~~~~~~~~~~l~~~~~~~v~~~l~~ 89 (148)
+++.+++. ..+.-.|++.++.|. ..--++.+.+...+.+ .++. ..+..+|+.
T Consensus 4 ~~~~~~l~~g~l~~~IL~lL~~~p-~~gyel~~~l~~~~~~----------~i~~----------------gtly~~L~~ 56 (117)
T 3elk_A 4 DPTRERILHGLITLYILKELVKRP-MHGYELQKSMFETTGQ----------ALPQ----------------GSIYILLKT 56 (117)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHSC-EEHHHHHHHHHHHHSC----------CCCT----------------THHHHHHHH
T ss_pred hHHHHHHHhhHHHHHHHHHHHcCC-CCHHHHHHHHHHHhCC----------CCCc----------------chHHHHHHH
Confidence 45666766 467888888888776 4556777777654311 1121 345688899
Q ss_pred hhhCCceeecC----C----CccccChhhHHHHhcCC
Q psy9269 90 LSRYNLITMND----G----FDILPTVTGSIMAKFCI 118 (148)
Q Consensus 90 L~~~~lI~~~~----~----~~i~~T~lG~i~S~~YI 118 (148)
|++.|+|+... + -.+..|+.|+-.-.-.+
T Consensus 57 Le~~GlI~~~~~~~~~~~~rk~Y~lT~~G~~~l~~~~ 93 (117)
T 3elk_A 57 MKERGFVISESSVNEKGQQLTVYHITDAGKKFLCDHS 93 (117)
T ss_dssp HHHHTSEEEEEEEC-CCCEEEEEEECHHHHHHHHHTS
T ss_pred HHHCCCEEEEeeecCCCCCceEEEECHHHHHHHHHHH
Confidence 99999998542 1 24789999997655443
No 136
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=23.24 E-value=1.2e+02 Score=20.09 Aligned_cols=60 Identities=12% Similarity=-0.015 Sum_probs=35.0
Q ss_pred hHHHHHHHHhhhCCceeecCC-Ccccc-ChhhHHHHhc---CCC--HHHH--HhccCCCCHHHHHHhhh
Q psy9269 81 GLCMRELNGLSRYNLITMNDG-FDILP-TVTGSIMAKF---CIG--FNTM--VAFTGWEKAQKDLALLT 140 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~-~~i~~-T~lG~i~S~~---YI~--~~T~--~~~~~~~s~~~lL~ll~ 140 (148)
.-|.+|+..|++.|+|...+. |.+.. -....+...+ .+. .+.. .....+.+..++..++.
T Consensus 50 ~tvr~Al~~L~~~G~i~~~~~~G~~V~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~l~~l~~ 118 (126)
T 3ic7_A 50 NTVMRSYEYLQSQEVIYNKRGIGFFVASGAKMLIHSLRKEQFLKEEVGSFFRQLYTLGISIKEIEKMYY 118 (126)
T ss_dssp GGGHHHHHHHHTTTSEEEETTTEEEECTTHHHHHHHHHHTTCCCCCSHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCcEEEEcCCccEEccCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 567899999999999998876 54433 3333343333 221 1111 11155567777766654
No 137
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=23.23 E-value=2.3e+02 Score=20.89 Aligned_cols=24 Identities=17% Similarity=0.063 Sum_probs=19.8
Q ss_pred hHHHHHHHHhhhCCceeecCC-Ccc
Q psy9269 81 GLCMRELNGLSRYNLITMNDG-FDI 104 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~-~~i 104 (148)
.-|.+|+..|++.|+|..... |.+
T Consensus 49 ~tvr~Al~~L~~~G~i~~~~g~G~~ 73 (243)
T 2wv0_A 49 MTVRQALSNLVNEGLLYRLKGRGTF 73 (243)
T ss_dssp HHHHHHHHHHHHTTSEEECTTSCEE
T ss_pred HHHHHHHHHHHHCCcEEEeCCCeEE
Confidence 568899999999999998765 544
No 138
>1mw9_X DNA topoisomerase I; decatenase enzyme, toprim domain; HET: DNA; 1.67A {Escherichia coli} SCOP: e.10.1.1 PDB: 1mw8_X* 1cy1_A* 1cy0_A* 1cy2_A* 1cy4_A* 1cy6_A* 1cy7_A* 1cy8_A* 3pwt_A* 3px7_A* 1ecl_A 1cy9_A* 1cyy_A*
Probab=23.05 E-value=53 Score=28.32 Aligned_cols=31 Identities=6% Similarity=0.156 Sum_probs=24.2
Q ss_pred HHHHHhhhCCceeecCCCccccChhhHHHHhc
Q psy9269 85 RELNGLSRYNLITMNDGFDILPTVTGSIMAKF 116 (148)
Q Consensus 85 ~~l~~L~~~~lI~~~~~~~i~~T~lG~i~S~~ 116 (148)
..|..|.+.|.|..++ ..+.||++|+.+..+
T Consensus 499 ~iI~~L~~R~Yv~~~~-k~l~pT~~G~~l~~~ 529 (592)
T 1mw9_X 499 SIISTIQDRGYVRVEN-RRFYAEKMGEIVTDR 529 (592)
T ss_dssp HHHHHHHHTTSEEEET-TEEEECHHHHHHHHH
T ss_pred HHHHHHHhcCceeecC-CEeeecHHHHHHHHH
Confidence 3556788889999876 579999999876543
No 139
>3iz5_E 60S ribosomal protein L11 (L5P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_E 3izc_E 3izs_E 3o58_K 3o5h_K 3u5e_J 3u5i_J 4b6a_J 1s1i_J 2noq_H 3j0q_k 3jyw_J
Probab=22.81 E-value=31 Score=25.47 Aligned_cols=16 Identities=13% Similarity=0.264 Sum_probs=13.0
Q ss_pred CCHHHHHHHHHhHHHH
Q psy9269 35 SDVSVAVEWLRSTFFF 50 (148)
Q Consensus 35 ~s~~~~~~wl~~TFly 50 (148)
-+.+||+.||+..|=.
T Consensus 156 v~keea~~~~~~~~~~ 171 (180)
T 3iz5_E 156 VTKEDAMKWFQVKYEG 171 (180)
T ss_dssp CCHHHHHHHHHHSCC-
T ss_pred eCHHHHHHHHHHhcCE
Confidence 3899999999998743
No 140
>2zkr_d 60S ribosomal protein L11; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=22.38 E-value=34 Score=25.12 Aligned_cols=17 Identities=18% Similarity=0.458 Sum_probs=13.6
Q ss_pred CCcCCHHHHHHHHHhHH
Q psy9269 32 KTISDVSVAVEWLRSTF 48 (148)
Q Consensus 32 g~i~s~~~~~~wl~~TF 48 (148)
..--+.+||+.|++..|
T Consensus 154 ~hr~~k~e~~~~~~~~~ 170 (178)
T 2zkr_d 154 KHRISKEEAMRWFQQKY 170 (178)
T ss_dssp TTSCCHHHHHHHHHTTT
T ss_pred CceECHHHHHHHHHHhC
Confidence 33458999999999886
No 141
>1vq8_D 50S ribosomal protein L5P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.77.1.1 PDB: 1vq4_D* 1vq5_D* 1vq6_D* 1vq7_D* 1s72_D* 1vq9_D* 1vqk_D* 1vql_D* 1vqm_D* 1vqn_D* 1vqo_D* 1vqp_D* 1yhq_D* 1yi2_D* 1yij_D* 1yit_D* 1yj9_D* 1yjn_D* 1yjw_D* 2otj_D* ...
Probab=22.32 E-value=34 Score=25.11 Aligned_cols=14 Identities=29% Similarity=0.451 Sum_probs=12.2
Q ss_pred CCHHHHHHHHHhHH
Q psy9269 35 SDVSVAVEWLRSTF 48 (148)
Q Consensus 35 ~s~~~~~~wl~~TF 48 (148)
-+.+||+.|++..|
T Consensus 158 ~~k~ea~~~~~~~~ 171 (177)
T 1vq8_D 158 LNPADAVAFIESTY 171 (177)
T ss_dssp CCHHHHHHHHHTTT
T ss_pred eCHHHHHHHHHHhc
Confidence 47899999999876
No 142
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=22.29 E-value=59 Score=21.81 Aligned_cols=24 Identities=17% Similarity=0.192 Sum_probs=20.2
Q ss_pred hHHHHHHHHhhhCCceeecCC-Ccc
Q psy9269 81 GLCMRELNGLSRYNLITMNDG-FDI 104 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~-~~i 104 (148)
.-|.+|+..|+..|+|...+. |.+
T Consensus 53 ~tVReAl~~L~~eGlv~~~~g~G~~ 77 (134)
T 4ham_A 53 NTVSKAYQELERQEVIITVKGKGTF 77 (134)
T ss_dssp HHHHHHHHHHHHTTSEEEETTTEEE
T ss_pred HHHHHHHHHHHHCCcEEEEcCcEEE
Confidence 678899999999999998775 544
No 143
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=22.11 E-value=78 Score=19.83 Aligned_cols=30 Identities=10% Similarity=-0.224 Sum_probs=21.7
Q ss_pred HHHHHHHHhhhCCceeecCCC--ccccChhhH
Q psy9269 82 LCMRELNGLSRYNLITMNDGF--DILPTVTGS 111 (148)
Q Consensus 82 ~v~~~l~~L~~~~lI~~~~~~--~i~~T~lG~ 111 (148)
-|...|..|++.|+|...+.| ....|+-|+
T Consensus 42 aVr~hL~~Le~eGlV~~~~~gRP~w~LT~~g~ 73 (79)
T 1xmk_A 42 DINAVLIDMERQGDVYRQGTTPPIWHLTDKKR 73 (79)
T ss_dssp HHHHHHHHHHHTTSEEEECSSSCEEEECHHHH
T ss_pred HHHHHHHHHHHCCCEEecCCCCCCeEeCHhHH
Confidence 688999999999999854322 345566654
No 144
>4ggd_C Mitotic checkpoint serine/threonine-protein kinas beta; cell cycle, mitosis, securin, ubiquitination, WD40; 2.44A {Homo sapiens}
Probab=21.79 E-value=23 Score=17.45 Aligned_cols=15 Identities=27% Similarity=0.490 Sum_probs=12.3
Q ss_pred CccccChhhHHHHhc
Q psy9269 102 FDILPTVTGSIMAKF 116 (148)
Q Consensus 102 ~~i~~T~lG~i~S~~ 116 (148)
..+.|..-||+||-+
T Consensus 8 envqplrqgrim~tl 22 (26)
T 4ggd_C 8 ENVQPLRQGRIMSTL 22 (26)
T ss_pred hccchhhccchhhhh
Confidence 468999999999854
No 145
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=21.63 E-value=36 Score=27.59 Aligned_cols=33 Identities=15% Similarity=0.087 Sum_probs=25.8
Q ss_pred hHHHHHHHHhhhCCceeecCC------CccccChhhHHH
Q psy9269 81 GLCMRELNGLSRYNLITMNDG------FDILPTVTGSIM 113 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~------~~i~~T~lG~i~ 113 (148)
.-+...|+.|++.|+|+...+ -.+..|+-|+-.
T Consensus 435 ~~~t~~~~~le~~g~v~r~~~~~D~R~~~i~lT~~g~~~ 473 (487)
T 1hsj_A 435 YYLTKALQKLKDLKLLSKKRSLQDERTVIVYVTDTQKAN 473 (487)
T ss_dssp HHHHHHHHHHHTTTTSCCEECCSSSSCCEEECCSSHHHH
T ss_pred HHHHHHHHHHHHCCCEeecCCCCCCCeEEEEECHHHHHH
Confidence 456678999999999987543 258999999854
No 146
>2qv5_A AGR_C_5032P, uncharacterized protein ATU2773; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Agrobacterium tumefaciens str}
Probab=21.02 E-value=2.6e+02 Score=21.36 Aligned_cols=55 Identities=11% Similarity=0.091 Sum_probs=41.0
Q ss_pred hHHHHHHHHhhhCCceeecCCCccccChhhHHHHhcCCCHHHHHhc-cCCCCHHHHH
Q psy9269 81 GLCMRELNGLSRYNLITMNDGFDILPTVTGSIMAKFCIGFNTMVAF-TGWEKAQKDL 136 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~~~i~~T~lG~i~S~~YI~~~T~~~~-~~~~s~~~lL 136 (148)
......+..|.+.|+..+|. ++..-|-.++++-++-|.+.....| .+..+...+.
T Consensus 142 ~~M~~vm~~L~~~gL~FlDS-~Ts~~S~a~~~A~~~gvp~~~rdvFLD~~~~~~~I~ 197 (261)
T 2qv5_A 142 SALEPVMRDIGKRGLLFLDD-GSSAQSLSGGIAKAISAPQGFADVLLDGEVTEASIL 197 (261)
T ss_dssp HHHHHHHHHHHHTTCEEEEC-SCCTTCCHHHHHHHHTCCEEECSEETTSSCSHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEcC-CCCcccHHHHHHHHcCCCeEEeeeecCCCCCHHHHH
Confidence 45566777899999999988 5666677889999999988888888 4444444443
No 147
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=20.70 E-value=1.6e+02 Score=21.64 Aligned_cols=24 Identities=17% Similarity=0.076 Sum_probs=20.1
Q ss_pred hHHHHHHHHhhhCCceeecCC-Ccc
Q psy9269 81 GLCMRELNGLSRYNLITMNDG-FDI 104 (148)
Q Consensus 81 ~~v~~~l~~L~~~~lI~~~~~-~~i 104 (148)
.-|.+|+..|++.|+|..... |.+
T Consensus 48 ~tvr~Al~~L~~~G~i~~~~g~G~~ 72 (236)
T 3edp_A 48 TTIRRAVDLLVEEGLVVRKNGVGLY 72 (236)
T ss_dssp HHHHHHHHHHHHTTSEEEETTTEEE
T ss_pred HHHHHHHHHHHHCCCEEEECCceEE
Confidence 578899999999999998765 554
No 148
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=20.58 E-value=1.3e+02 Score=23.87 Aligned_cols=55 Identities=7% Similarity=0.004 Sum_probs=39.0
Q ss_pred HHHHHHHHhhhCCceeecCCCccccChhhHHHHhcC-CCHHHHHhc-----cCCCCHHHHHHhhhCCCCC
Q psy9269 82 LCMRELNGLSRYNLITMNDGFDILPTVTGSIMAKFC-IGFNTMVAF-----TGWEKAQKDLALLTTLPLA 145 (148)
Q Consensus 82 ~v~~~l~~L~~~~lI~~~~~~~i~~T~lG~i~S~~Y-I~~~T~~~~-----~~~~s~~~lL~ll~~s~e~ 145 (148)
-.+..+..|.+.| +.++.+|++.+... |...++.-. .-+.+..++..+|.++|..
T Consensus 45 ~~e~~l~~L~d~G---------fs~~~i~~il~~~P~il~~~l~~~i~~L~~LGls~e~V~kiL~k~P~l 105 (335)
T 4fp9_B 45 ELERVMSSLLDMG---------FSNAHINELLSVRRGASLQQLLDIISEFILLGLNPEPVCVVLKKSPQL 105 (335)
T ss_dssp HHHHHHHHHHHTT---------CCHHHHHHHHHHCSSCCHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGG
T ss_pred cHHHHHHHHHHCC---------CCHHHHHHHHHhCcccchhHHHHHHHHHHHcCCCHHHHHHHHHhChhh
Confidence 4567777888777 66778898887764 444443332 4557889999999999864
No 149
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=20.07 E-value=1.3e+02 Score=27.89 Aligned_cols=32 Identities=16% Similarity=0.186 Sum_probs=25.1
Q ss_pred HHHHHhhhCCceeecCCCccccChhhHHHHhc
Q psy9269 85 RELNGLSRYNLITMNDGFDILPTVTGSIMAKF 116 (148)
Q Consensus 85 ~~l~~L~~~~lI~~~~~~~i~~T~lG~i~S~~ 116 (148)
..|..|.+-|.|..++++.+.||++|+.+-.+
T Consensus 1024 ~iI~~l~~r~Yv~~~~~~~l~pT~~G~~l~~~ 1055 (1104)
T 4ddu_A 1024 KIVEVLFRRGYVYEDKYKRVRPTRFGVMVYSY 1055 (1104)
T ss_dssp HHHHHHHHTTSEEECTTCCEEECHHHHHHHHH
T ss_pred HHHHHHHhCCeEEEcCCCeEeEchHHHHHHHH
Confidence 34567888899998764579999999998543
Done!