RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9269
         (148 letters)



>d2p6ra1 a.4.5.43 (A:404-488) Hel308 helicase {Archaeoglobus
           fulgidus [TaxId: 2234]}
          Length = 85

 Score = 51.8 bits (124), Expect = 2e-10
 Identities = 19/108 (17%), Positives = 34/108 (31%), Gaps = 26/108 (24%)

Query: 13  VESSLH--RHLVEHLNSEIVLKTISDVSVAVEWLRSTFFFVRVLSNPGHYGFPAGLSSEE 70
           + S L    HL  H  S I       +    ++   TFFF +   +              
Sbjct: 2   ITSKLGVETHLRFHSLSIICDGYAKTLEELEDFFADTFFFKQNEISL------------- 48

Query: 71  LQSRLQGKNSGLCMRELNGLSRYNLITMNDGFDILPTVTGSIMAKFCI 118
                    S    R +  L  + ++       + PT  GS++++  I
Sbjct: 49  ---------SYELERVVRQLENWGMVVEA--AHLAPTKLGSLVSRLYI 85


>d1w4ta1 d.3.1.5 (A:1-277) Arylamine N-acetyltransferase
           {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 277

 Score = 26.2 bits (57), Expect = 1.5
 Identities = 10/46 (21%), Positives = 23/46 (50%), Gaps = 4/46 (8%)

Query: 59  HYGFPAGLSSEELQSRL-QGKNSGLCMRELNGLSRYNLITMNDGFD 103
               P  + ++++ +++ +G   G C  ELN L    L+ +  G++
Sbjct: 48  LLDRPIEIDADKVFAKVVEGSRGGYCF-ELNSLFARLLLAL--GYE 90


>d2bsza1 d.3.1.5 (A:6-275) Arylamine N-acetyltransferase {Rhizobium
           loti [TaxId: 381]}
          Length = 270

 Score = 26.1 bits (57), Expect = 2.0
 Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 4/47 (8%)

Query: 59  HYGFPAGLSSEELQSRL-QGKNSGLCMRELNGLSRYNLITMNDGFDI 104
             G P  L    LQ ++  G   G C  E N L  + L  +  GF++
Sbjct: 43  FLGRPVRLDLAALQDKIVLGGRGGYCF-EHNLLFMHALKAL--GFEV 86


>d2g7ja1 d.198.5.1 (A:1-112) Putative cytoplasmic protein YgaC
           {Salmonella typhimurium [TaxId: 90371]}
          Length = 112

 Score = 24.1 bits (52), Expect = 6.0
 Identities = 8/19 (42%), Positives = 8/19 (42%)

Query: 57  PGHYGFPAGLSSEELQSRL 75
             HYG P G SS     R 
Sbjct: 87  HEHYGIPHGFSSRIALERY 105


>d1e2ta_ d.3.1.5 (A:) Arylamine N-acetyltransferase {Salmonella
           typhimurium [TaxId: 90371]}
          Length = 274

 Score = 24.2 bits (52), Expect = 7.1
 Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 4/46 (8%)

Query: 59  HYGFPAGLSSEELQSR-LQGKNSGLCMRELNGLSRYNLITMNDGFD 103
                  L    L+ + L  +  G C  ELNGL    L  +  GF+
Sbjct: 45  LLPREIQLDETALEEKLLYARRGGYCF-ELNGLFERALRDI--GFN 87


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.135    0.396 

Gapped
Lambda     K      H
   0.267   0.0624    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 528,728
Number of extensions: 22340
Number of successful extensions: 38
Number of sequences better than 10.0: 1
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 7
Length of query: 148
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 71
Effective length of database: 1,350,386
Effective search space: 95877406
Effective search space used: 95877406
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (22.9 bits)