BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9274
(318 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A
Morphinan Antagonist
Length = 464
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 51/85 (60%), Gaps = 2/85 (2%)
Query: 116 VPFTATDYVTTCWPFGDVWCKMYLIV--VTAYASVYTLVLMSLDRFLAVVHPIASMSVRT 173
+PF + +Y+ WPFG++ CK+ + + + S++TL MS+DR++AV HP+ ++ RT
Sbjct: 70 LPFQSVNYLMGTWPFGNILCKIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPVKALDFRT 129
Query: 174 ERNALKAILITWIVIVLTAVPVFNM 198
RNA + WI+ +PV M
Sbjct: 130 PRNAKIVNVCNWILSSAIGLPVMFM 154
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 514
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 2/122 (1%)
Query: 80 NALVVVVVAFNQQMRSTTXXXXXXXXXXXXXXXVCCVPFTATDYVTTCWPFGDVWCKMY- 138
N LV+ +A +++++ T + VPF A +T W FG+ WC+ +
Sbjct: 200 NVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEFWT 259
Query: 139 -LIVVTAYASVYTLVLMSLDRFLAVVHPIASMSVRTERNALKAILITWIVIVLTAVPVFN 197
+ V+ AS+ TL ++++DR+ A+ P S+ T+ A IL+ WIV LT+
Sbjct: 260 SIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQ 319
Query: 198 MH 199
MH
Sbjct: 320 MH 321
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor.
pdb|3NY8|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Inverse Agonist Ici 118,551
pdb|3NY9|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With A Novel Inverse Agonist
pdb|3NYA|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Neutral Antagonist Alprenolol
Length = 490
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 2/122 (1%)
Query: 80 NALVVVVVAFNQQMRSTTXXXXXXXXXXXXXXXVCCVPFTATDYVTTCWPFGDVWCKMY- 138
N LV+ +A +++++ T + VPF A + W FG+ WC+ +
Sbjct: 59 NVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWT 118
Query: 139 -LIVVTAYASVYTLVLMSLDRFLAVVHPIASMSVRTERNALKAILITWIVIVLTAVPVFN 197
+ V+ AS++TL ++++DR+ A+ P S+ T+ A IL+ WIV LT+
Sbjct: 119 SIDVLCVTASIWTLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQ 178
Query: 198 MH 199
MH
Sbjct: 179 MH 180
>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
pdb|4DJH|B Chain B, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
Length = 480
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 63/115 (54%), Gaps = 6/115 (5%)
Query: 80 NALVVVVVAFNQQMRSTTXXXXXXXXXXXXXXXVCCVPFTATDYVTTCWPFGDVWCKMYL 139
N+LV+ V+ +M++ T +PF +T Y+ WPFGDV CK+ L
Sbjct: 40 NSLVMFVIIRYTKMKTATNIYIFNLALADALVTTT-MPFQSTVYLMNSWPFGDVLCKIVL 98
Query: 140 IV--VTAYASVYTLVLMSLDRFLAVVHPIASMSVRTERNALKAILITWIVIVLTA 192
+ + S++TL +MS+DR++AV HP+ ++ RT LKA +I + +L++
Sbjct: 99 SIDYYNMFTSIFTLTMMSVDRYIAVCHPVKALDFRT---PLKAKIINICIWLLSS 150
>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization
Of A G Protein Coupled Receptor
Length = 309
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 2/122 (1%)
Query: 80 NALVVVVVAFNQQMRSTTXXXXXXXXXXXXXXXVCCVPFTATDYVTTCWPFGDVWCKMY- 138
N LV+ +A +++++ T + VPF A +T W FG+ WC+ +
Sbjct: 23 NVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEFWT 82
Query: 139 -LIVVTAYASVYTLVLMSLDRFLAVVHPIASMSVRTERNALKAILITWIVIVLTAVPVFN 197
+ V+ AS+ TL ++++DR+ A+ P S+ T+ A IL+ WIV LT+
Sbjct: 83 SIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQ 142
Query: 198 MH 199
MH
Sbjct: 143 MH 144
>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To
Naltrindole
Length = 461
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 116 VPFTATDYVTTCWPFGDVWCKMYLIV--VTAYASVYTLVLMSLDRFLAVVHPIASMSVRT 173
+PF + Y+ WPFG++ CK L + + S++TL +MS+DR++AV HP+ ++ RT
Sbjct: 67 LPFQSAKYLMETWPFGELLCKAVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVKALDFRT 126
Query: 174 ERNALKAILITWIVIVLTAVPVFNM 198
A + W++ VP+ M
Sbjct: 127 PAKAKLINICIWVLASGVGVPIMVM 151
>pdb|4EA3|A Chain A, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
Length = 434
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 59/121 (48%), Gaps = 3/121 (2%)
Query: 80 NALVVVVVAFNQQMRSTTXXXXXXXXXXXXXXXVCCVPFTATDYVTTCWPFGDVWCKMYL 139
N LV+ V+ + +M++ T + +PF TD + WPFG+ CK +
Sbjct: 143 NCLVMYVILRHTKMKTATNIYIFNLALADTLVLLT-LPFQGTDILLGFWPFGNALCKTVI 201
Query: 140 IV--VTAYASVYTLVLMSLDRFLAVVHPIASMSVRTERNALKAILITWIVIVLTAVPVFN 197
+ + S +TL MS+DR++A+ HPI ++ VRT A + W + + VPV
Sbjct: 202 AIDYYNMFTSTFTLTAMSVDRYVAICHPIRALDVRTSSKAQAVNVAIWALASVVGVPVAI 261
Query: 198 M 198
M
Sbjct: 262 M 262
>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The
Beta2 Adrenoceptor
Length = 501
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 2/122 (1%)
Query: 80 NALVVVVVAFNQQMRSTTXXXXXXXXXXXXXXXVCCVPFTATDYVTTCWPFGDVWCKMY- 138
N LV+ +A +++++ T + VPF A + W FG+ WC+ +
Sbjct: 59 NVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWT 118
Query: 139 -LIVVTAYASVYTLVLMSLDRFLAVVHPIASMSVRTERNALKAILITWIVIVLTAVPVFN 197
+ V+ AS+ TL ++++DR+ A+ P S+ T+ A IL+ WIV LT+
Sbjct: 119 SIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQ 178
Query: 198 MH 199
MH
Sbjct: 179 MH 180
>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G
Protein- Coupled Receptor
Length = 500
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 2/122 (1%)
Query: 80 NALVVVVVAFNQQMRSTTXXXXXXXXXXXXXXXVCCVPFTATDYVTTCWPFGDVWCKMY- 138
N LV+ +A +++++ T + VPF A + W FG+ WC+ +
Sbjct: 58 NVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWT 117
Query: 139 -LIVVTAYASVYTLVLMSLDRFLAVVHPIASMSVRTERNALKAILITWIVIVLTAVPVFN 197
+ V+ AS+ TL ++++DR+ A+ P S+ T+ A IL+ WIV LT+
Sbjct: 118 SIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQ 177
Query: 198 MH 199
MH
Sbjct: 178 MH 179
>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic
Receptor- Fab Complex
Length = 366
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 2/122 (1%)
Query: 80 NALVVVVVAFNQQMRSTTXXXXXXXXXXXXXXXVCCVPFTATDYVTTCWPFGDVWCKMY- 138
N LV+ +A +++++ T + VPF A + W FG+ WC+ +
Sbjct: 52 NVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWT 111
Query: 139 -LIVVTAYASVYTLVLMSLDRFLAVVHPIASMSVRTERNALKAILITWIVIVLTAVPVFN 197
+ V+ AS+ TL ++++DR+ A+ P S+ T+ A IL+ WIV LT+
Sbjct: 112 SIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQ 171
Query: 198 MH 199
MH
Sbjct: 172 MH 173
>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 365
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 2/122 (1%)
Query: 80 NALVVVVVAFNQQMRSTTXXXXXXXXXXXXXXXVCCVPFTATDYVTTCWPFGDVWCKMY- 138
N LV+ +A +++++ T + VPF A + W FG+ WC+ +
Sbjct: 51 NVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWT 110
Query: 139 -LIVVTAYASVYTLVLMSLDRFLAVVHPIASMSVRTERNALKAILITWIVIVLTAVPVFN 197
+ V+ AS+ TL ++++DR+ A+ P S+ T+ A IL+ WIV LT+
Sbjct: 111 SIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQ 170
Query: 198 MH 199
MH
Sbjct: 171 MH 172
>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 342
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 2/122 (1%)
Query: 80 NALVVVVVAFNQQMRSTTXXXXXXXXXXXXXXXVCCVPFTATDYVTTCWPFGDVWCKMY- 138
N LV+ +A +++++ T + VPF A + W FG+ WC+ +
Sbjct: 28 NVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWT 87
Query: 139 -LIVVTAYASVYTLVLMSLDRFLAVVHPIASMSVRTERNALKAILITWIVIVLTAVPVFN 197
+ V+ AS+ TL ++++DR+ A+ P S+ T+ A IL+ WIV LT+
Sbjct: 88 SIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQ 147
Query: 198 MH 199
MH
Sbjct: 148 MH 149
>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex
Length = 458
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 2/122 (1%)
Query: 80 NALVVVVVAFNQQMRSTTXXXXXXXXXXXXXXXVCCVPFTATDYVTTCWPFGDVWCKMY- 138
N LV+ +A +++++ T + VPF A + W FG+ WC+ +
Sbjct: 27 NVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAACILMKMWTFGNFWCEFWT 86
Query: 139 -LIVVTAYASVYTLVLMSLDRFLAVVHPIASMSVRTERNALKAILITWIVIVLTAVPVFN 197
+ V+ AS+ TL ++++DR+ A+ P S+ T+ A IL+ WIV LT+
Sbjct: 87 SIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQ 146
Query: 198 MH 199
MH
Sbjct: 147 MH 148
>pdb|3OE6|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In I222
Spacegroup
Length = 508
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 57/119 (47%), Gaps = 4/119 (3%)
Query: 80 NALVVVVVAFNQQMRSTTXXXXXXXXXXXXXXXVCCVPFTATDYVTTCWPFGDVWCKMYL 139
N LV++V+ + +++RS T V +PF A D V W FG+ CK
Sbjct: 66 NGLVILVMGYQKKLRSMTDKYRLHLSVADLLF-VITLPFWAVDAVAN-WYFGNFLCKAVH 123
Query: 140 IVVTA--YASVYTLVLMSLDRFLAVVHPIASMSVRTERNALKAILITWIVIVLTAVPVF 196
++ T Y+SV+ L +SLDR+LA+VH S R + WI +L +P F
Sbjct: 124 VIYTVNLYSSVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDF 182
>pdb|3ODU|A Chain A, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3ODU|B Chain B, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3OE8|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|B Chain B, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|C Chain C, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 502
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 57/119 (47%), Gaps = 4/119 (3%)
Query: 80 NALVVVVVAFNQQMRSTTXXXXXXXXXXXXXXXVCCVPFTATDYVTTCWPFGDVWCKMYL 139
N LV++V+ + +++RS T V +PF A D V W FG+ CK
Sbjct: 66 NGLVILVMGYQKKLRSMTDKYRLHLSVADLLF-VITLPFWAVDAVAN-WYFGNFLCKAVH 123
Query: 140 IVVTA--YASVYTLVLMSLDRFLAVVHPIASMSVRTERNALKAILITWIVIVLTAVPVF 196
++ T Y+SV+ L +SLDR+LA+VH S R + WI +L +P F
Sbjct: 124 VIYTVNLYSSVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDF 182
>pdb|3OE0|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Cyclic Peptide Antagonist Cvx15
pdb|3OE9|A Chain A, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE9|B Chain B, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 499
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 57/119 (47%), Gaps = 4/119 (3%)
Query: 80 NALVVVVVAFNQQMRSTTXXXXXXXXXXXXXXXVCCVPFTATDYVTTCWPFGDVWCKMYL 139
N LV++V+ + +++RS T V +PF A D V W FG+ CK
Sbjct: 66 NGLVILVMGYQKKLRSMTDKYRLHLSVADLLF-VITLPFWAVDAVAN-WYFGNFLCKAVH 123
Query: 140 IVVTA--YASVYTLVLMSLDRFLAVVHPIASMSVRTERNALKAILITWIVIVLTAVPVF 196
++ T Y+SV+ L +SLDR+LA+VH S R + WI +L +P F
Sbjct: 124 VIYTVNLYSSVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDF 182
>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|C Chain C, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|D Chain D, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2YCW|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCW|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCX|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCX|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCZ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCZ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCY|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCY|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|4GPO|A Chain A, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
pdb|4GPO|B Chain B, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
Length = 313
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 80 NALVVVVVAFNQQMRSTTXXXXXXXXXXXXXXXVCCVPFTATDYVTTCWPFGDVWCKMY- 138
N LV+ + Q++++ T + VPF AT V W +G C+++
Sbjct: 29 NVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWT 88
Query: 139 -LIVVTAYASVYTLVLMSLDRFLAVVHPIASMSVRTERNALKAILITWIVIVLTAVPVFN 197
L V+ AS+ TL ++++DR+LA+ P S+ T A I W + L +
Sbjct: 89 SLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIM 148
Query: 198 MH 199
MH
Sbjct: 149 MH 150
>pdb|2Y00|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y01|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y01|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y02|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y02|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y03|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y03|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y04|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|2Y04|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|4AMI|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMI|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMJ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
pdb|4AMJ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
Length = 315
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 80 NALVVVVVAFNQQMRSTTXXXXXXXXXXXXXXXVCCVPFTATDYVTTCWPFGDVWCKMY- 138
N LV+ + Q++++ T + VPF AT V W +G C+++
Sbjct: 29 NVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWT 88
Query: 139 -LIVVTAYASVYTLVLMSLDRFLAVVHPIASMSVRTERNALKAILITWIVIVLTAVPVFN 197
L V+ AS+ TL ++++DR+LA+ P S+ T A I W + L +
Sbjct: 89 SLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIM 148
Query: 198 MH 199
MH
Sbjct: 149 MH 150
>pdb|3VW7|A Chain A, Crystal Structure Of Human Protease-Activated Receptor 1
(Par1) Bound With Antagonist Vorapaxar At 2.2 Angstrom
Length = 484
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 11/91 (12%)
Query: 113 VCCVPFTATDYVTTC-WPFGDVWCKMYLIVVTA------YASVYTLVLMSLDRFLAVVHP 165
V +PF + Y + W FG C+ VTA YAS+ + ++S+DRFLAVV+P
Sbjct: 70 VSVLPFKISYYFSGSDWQFGSELCRF----VTAAFYCNMYASILLMTVISIDRFLAVVYP 125
Query: 166 IASMSVRTERNALKAILITWIVIVLTAVPVF 196
+ S+S RT A L W + + VP+
Sbjct: 126 MQSLSWRTLGRASFTCLAIWALAIAGVVPLL 156
>pdb|4GRV|A Chain A, The Crystal Structure Of The Neurotensin Receptor Nts1 In
Complex With Neurotensin (8-13)
Length = 510
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 128 WPFGDVWCKMYLIVVTA--YASVYTLVLMSLDRFLAVVHPIASMSVRTERNALKAILITW 185
W FGD C+ Y + A YA+ + +S+ R+LA+ HP + ++ + K I W
Sbjct: 103 WAFGDAGCRGYYFLRDACTYATALNVASLSVARYLAICHPFKAKTLMSRSRTKKFISAIW 162
Query: 186 IVIVLTAVPVFNMHG 200
+ L A+P+ G
Sbjct: 163 LASALLAIPMLFTMG 177
>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|B Chain B, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|C Chain C, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|D Chain D, Structure Of The M3 Muscarinic Acetylcholine Receptor
Length = 479
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 53/117 (45%), Gaps = 2/117 (1%)
Query: 80 NALVVVVVAFNQQMRSTTXXXXXXXXXXXXXXXVCCVPFTATDYVTTCWPFGDVWCKMYL 139
N LV+V N+Q+++ V + T + W G++ C ++L
Sbjct: 30 NILVIVAFKVNKQLKTVNNYFLLSLACADLIIGVISMNLFTTYIIMNRWALGNLACDLWL 89
Query: 140 IV--VTAYASVYTLVLMSLDRFLAVVHPIASMSVRTERNALKAILITWIVIVLTAVP 194
+ V + ASV L+++S DR+ ++ P+ + RT + A I + W++ + P
Sbjct: 90 SIDYVASNASVMNLLVISFDRYFSITRPLTYRAKRTTKRAGVMIGLAWVISFVLWAP 146
>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed
With Nk1r
pdb|2KSA|A Chain A, Substance P In DmpcCHAPS ISOTROPIC Q0.25 BICELLES AS A
LIGAND FOR Nk1r
pdb|2KSB|A Chain A, Substance P In Isotropic Q0.25 DmpcCHAPSGM1 BICELLES AS A
LIGAND For Nk1r
Length = 364
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 128 WPFGDVWCKM--YLIVVTAYASVYTLVLMSLDRFLAVVHPIASMSVRTERNALKAIL-IT 184
W +G +CK + + +AS+Y++ ++ DR++A++HP+ R A K ++ +
Sbjct: 98 WYYGLFYCKFHNFFPIAAVFASIYSMTAVAFDRYMAIIHPLQP---RLSATATKVVICVI 154
Query: 185 WIVIVLTAVP 194
W++ +L A P
Sbjct: 155 WVLALLLAFP 164
>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin
pdb|2Z73|B Chain B, Crystal Structure Of Squid Rhodopsin
pdb|3AYM|A Chain A, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYM|B Chain B, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYN|A Chain A, Crystal Structure Of Squid Isorhodopsin
pdb|3AYN|B Chain B, Crystal Structure Of Squid Isorhodopsin
Length = 448
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 128 WPFGDVWCKMYLIV--VTAYASVYTLVLMSLDRFLAVVHPIASMSVRTERNALKAILITW 185
W FG CK+Y + + + S+ T+ ++S+DR+ + P+A+ + R A I+ W
Sbjct: 101 WIFGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVW 160
Query: 186 IVIVLTAV-PVFN 197
+ VL A+ P+F
Sbjct: 161 LWSVLWAIGPIFG 173
>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin
Length = 372
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 128 WPFGDVWCKMYLIV--VTAYASVYTLVLMSLDRFLAVVHPIASMSVRTERNALKAILITW 185
W FG CK+Y + + + S+ T+ ++S+DR+ + P+A+ + R A I+ W
Sbjct: 100 WIFGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVW 159
Query: 186 IVIVLTAV-PVFN 197
+ VL A+ P+F
Sbjct: 160 LWSVLWAIGPIFG 172
>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound
pdb|2YDV|A Chain A, Thermostabilised Human A2a Receptor With Neca Bound
Length = 325
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 72/155 (46%), Gaps = 14/155 (9%)
Query: 80 NALVVVVVAFNQQMRSTTXXXXXXXXXXXXXXXVCCVPFT---ATDYVTTCWPFGDVWCK 136
N LV V N +++ T V +PF +T + C G ++
Sbjct: 24 NVLVCWAVWLNSNLQNVTNYFVVSAAAADILVGVLAIPFAIAISTGFCAAC--HGCLFIA 81
Query: 137 MYLIVVTAYASVYTLVLMSLDRFLAVVHPIASMSVRTERNALKAILITWIV---IVLTAV 193
+++V+TA +S+++L+ +++DR++A+ P+ + T A I I W++ I LT +
Sbjct: 82 CFVLVLTA-SSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPM 140
Query: 194 PVFNMHGEVSYTYA-----SELHTACVFLDLDPVN 223
+N G+ A E AC+F D+ P+N
Sbjct: 141 LGWNNCGQPKEGKAHSQGCGEGQVACLFEDVVPMN 175
>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex
With Doxepin
Length = 452
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 116 VPFTATDYVTTCWPFGDVWCKMYLIV--VTAYASVYTLVLMSLDRFLAVVHPIASMSVRT 173
+P + + W G C +L + V + AS++++ ++ +DR+ +V P+ + RT
Sbjct: 62 MPMNILYLLMSKWSLGRPLCLFWLSMDYVASTASIFSVFILCIDRYRSVQQPLRYLKYRT 121
Query: 174 ERNALKAILITWIVIVLTAVPVFN 197
+ A IL W + L +P+
Sbjct: 122 KTRASATILGAWFLSFLWVIPILG 145
>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine
Receptor Bound To Zm241385.
pdb|3QAK|A Chain A, Agonist Bound Structure Of The Human Adenosine A2a
Receptor
Length = 488
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 70/155 (45%), Gaps = 14/155 (9%)
Query: 80 NALVVVVVAFNQQMRSTTXXXXXXXXXXXXXXXVCCVPFT---ATDYVTTCWPFGDVWCK 136
N LV V N +++ T V +PF +T + C G ++
Sbjct: 39 NVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITISTGFCAAC--HGCLFIA 96
Query: 137 MYLIVVTAYASVYTLVLMSLDRFLAVVHPIASMSVRTERNALKAILITWIV---IVLTAV 193
+++V+T +S+++L+ +++DR++A+ P+ + T A I I W++ I LT +
Sbjct: 97 CFVLVLTQ-SSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPM 155
Query: 194 PVFN-----MHGEVSYTYASELHTACVFLDLDPVN 223
+N G+ E AC+F D+ P+N
Sbjct: 156 LGWNNCGQPKEGKNHSQGCGEGQVACLFEDVVPMN 190
>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine
Receptor Bound To An Antagonist
Length = 467
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 128 WPFGDVWCKMYLIV--VTAYASVYTLVLMSLDRFLAVVHPIASMSVRTERNALKAILITW 185
WP G V C ++L + V + ASV L+++S DR+ V P+ RT + A I W
Sbjct: 89 WPLGPVVCDLWLALDYVVSNASVMNLLIISFDRYFCVTKPLTYPVKRTTKMAGMMIAAAW 148
Query: 186 IVIVLTAVP 194
++ + P
Sbjct: 149 VLSFILWAP 157
>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor
pdb|3REY|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Xac
pdb|3RFM|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Caffeine
pdb|3UZA|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
6-(2,6-
Dimethylpyridin-4-Yl)-5-Phenyl-1,2,4-Triazin-3-Amine
pdb|3UZC|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
4-(3-Amino-5- Phenyl-1,2,4-Triazin-6-Yl)-2-Chlorophenol
Length = 329
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 63/152 (41%), Gaps = 8/152 (5%)
Query: 80 NALVVVVVAFNQQMRSTTXXXXXXXXXXXXXXXVCCVPFTATDYVTTCWPFGDVWCKMYL 139
N LV V N +++ T V +PF T C
Sbjct: 24 NVLVCWAVWLNSNLQNVTNYFVVSLAAADILVGVLAIPFAITISTGFCAACHGCLFIACF 83
Query: 140 IVVTAYASVYTLVLMSLDRFLAVVHPIASMSVRTERNALKAILITWIV---IVLTAVPVF 196
++V A +S+++L+ +++DR++A+ P+ + T A I I W++ I LT + +
Sbjct: 84 VLVLAQSSIFSLLAIAIDRYIAIAIPLRYNGLVTGTRAAGIIAICWVLSFAIGLTPMLGW 143
Query: 197 N-----MHGEVSYTYASELHTACVFLDLDPVN 223
N G+ E AC+F D+ P+N
Sbjct: 144 NNCGQPKEGKNHSQGCGEGQVACLFEDVVPMN 175
>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In
Complex With Zm241385 At 1.8a Resolution
Length = 447
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 70/155 (45%), Gaps = 14/155 (9%)
Query: 80 NALVVVVVAFNQQMRSTTXXXXXXXXXXXXXXXVCCVPFT---ATDYVTTCWPFGDVWCK 136
N LV V N +++ T V +PF +T + C G ++
Sbjct: 49 NVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITISTGFCAAC--HGCLFIA 106
Query: 137 MYLIVVTAYASVYTLVLMSLDRFLAVVHPIASMSVRTERNALKAILITWIV---IVLTAV 193
+++V+T +S+++L+ +++DR++A+ P+ + T A I I W++ I LT +
Sbjct: 107 CFVLVLTQ-SSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPM 165
Query: 194 PVFN-----MHGEVSYTYASELHTACVFLDLDPVN 223
+N G+ E AC+F D+ P+N
Sbjct: 166 LGWNNCGQPKEGKNHSQGCGEGQVACLFEDVVPMN 200
>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 2.7 A Resolution
pdb|3VGA|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 3.1 A Resolution
Length = 326
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 70/155 (45%), Gaps = 14/155 (9%)
Query: 80 NALVVVVVAFNQQMRSTTXXXXXXXXXXXXXXXVCCVPFT---ATDYVTTCWPFGDVWCK 136
N LV V N +++ T V +PF +T + C G ++
Sbjct: 24 NVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITISTGFCAAC--HGCLFIA 81
Query: 137 MYLIVVTAYASVYTLVLMSLDRFLAVVHPIASMSVRTERNALKAILITWIV---IVLTAV 193
+++V+T +S+++L+ +++DR++A+ P+ + T A I I W++ I LT +
Sbjct: 82 CFVLVLTQ-SSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPM 140
Query: 194 PVFN-----MHGEVSYTYASELHTACVFLDLDPVN 223
+N G+ E AC+F D+ P+N
Sbjct: 141 LGWNNCGQPKEGKQHSQGCGEGQVACLFEDVVPMN 175
>pdb|2LNL|A Chain A, Structure Of Human Cxcr1 In Phospholipid Bilayers
Length = 296
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 128 WPFGDVWCKMYLIV--VTAYASVYTLVLMSLDRFLAVVHPIASMSVRTERNALKAI-LIT 184
W FG CK+ ++ V Y+ + L +S+DR+LA+VH A+ ++ +R+ +K + L
Sbjct: 75 WIFGTFLCKVVSLLKEVNFYSGILLLACISVDRYLAIVH--ATRTLTQKRHLVKFVCLGC 132
Query: 185 WIVIVLTAVPVF 196
W + + ++P F
Sbjct: 133 WGLSMNLSLPFF 144
>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
pdb|3PBL|B Chain B, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
Length = 481
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 59/131 (45%), Gaps = 9/131 (6%)
Query: 80 NALVVVVVAFNQQMRSTTXXXXXXXXXXXXXXXVCCVPFTATDYVTT-CWPFGDVWCKMY 138
N LV + V + +++TT +P+ VT W F + C ++
Sbjct: 56 NGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMPWVVYLEVTGGVWNFSRICCDVF 115
Query: 139 --LIVVTAYASVYTLVLMSLDRFLAVVHPIASMSVRTERNALK-AILIT--WIVIVLTAV 193
L V+ AS++ L +S+DR+ AVV P+ + + + A++IT W++ +
Sbjct: 116 VTLDVMMCTASIWNLCAISIDRYTAVVMPVHYQHGTGQSSCRRVALMITAVWVLAFAVSC 175
Query: 194 PV---FNMHGE 201
P+ FN G+
Sbjct: 176 PLLFGFNTTGD 186
>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively
Active N2c,M257y,D282c Rhodopsin Mutant In Complex With
A Peptide Resembling The C-Terminus Of The
Galpha-Protein Subunit (Gact)
Length = 349
Score = 31.2 bits (69), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 14/67 (20%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 130 FGDVWCKM--YLIVVTAYASVYTLVLMSLDRFLAVVHPIASMSVRTERNALKAILITWIV 187
FG C + + + ++++LV+++++R++ V P+++ E +A+ + TW++
Sbjct: 106 FGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFG-ENHAIMGVAFTWVM 164
Query: 188 IVLTAVP 194
+ A P
Sbjct: 165 ALACAAP 171
>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
pdb|2J4Y|B Chain B, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
Length = 349
Score = 31.2 bits (69), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 14/67 (20%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 130 FGDVWCKM--YLIVVTAYASVYTLVLMSLDRFLAVVHPIASMSVRTERNALKAILITWIV 187
FG C + + + ++++LV+++++R++ V P+++ E +A+ + TW++
Sbjct: 106 FGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFG-ENHAIMGVAFTWVM 164
Query: 188 IVLTAVP 194
+ A P
Sbjct: 165 ALACAAP 171
>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c,
D282c Rhodopsin Mutant With Bound Galphact Peptide
Length = 349
Score = 31.2 bits (69), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 14/67 (20%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 130 FGDVWCKM--YLIVVTAYASVYTLVLMSLDRFLAVVHPIASMSVRTERNALKAILITWIV 187
FG C + + + ++++LV+++++R++ V P+++ E +A+ + TW++
Sbjct: 106 FGPTGCNLQGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFG-ENHAIMGVAFTWVM 164
Query: 188 IVLTAVP 194
+ A P
Sbjct: 165 ALACAAP 171
>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal
Crystal Form
Length = 348
Score = 31.2 bits (69), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 14/67 (20%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 130 FGDVWCKM--YLIVVTAYASVYTLVLMSLDRFLAVVHPIASMSVRTERNALKAILITWIV 187
FG C + + + ++++LV+++++R++ V P+++ E +A+ + TW++
Sbjct: 105 FGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFG-ENHAIMGVAFTWVM 163
Query: 188 IVLTAVP 194
+ A P
Sbjct: 164 ALACAAP 170
>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|3OAX|B Chain B, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|1GZM|A Chain A, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1GZM|B Chain B, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1HZX|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1HZX|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|2I36|A Chain A, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|B Chain B, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|C Chain C, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I35|A Chain A, Crystal Structure Of Rhombohedral Crystal Form Of
Ground-State Rhodopsin
pdb|2I37|A Chain A, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|B Chain B, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|C Chain C, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2HPY|A Chain A, Crystallographic Model Of Lumirhodopsin
pdb|2HPY|B Chain B, Crystallographic Model Of Lumirhodopsin
pdb|2PED|A Chain A, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2PED|B Chain B, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2G87|A Chain A, Crystallographic Model Of Bathorhodopsin
pdb|2G87|B Chain B, Crystallographic Model Of Bathorhodopsin
pdb|1L9H|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1L9H|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1U19|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
pdb|1U19|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
Length = 349
Score = 31.2 bits (69), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 14/67 (20%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 130 FGDVWCKM--YLIVVTAYASVYTLVLMSLDRFLAVVHPIASMSVRTERNALKAILITWIV 187
FG C + + + ++++LV+++++R++ V P+++ E +A+ + TW++
Sbjct: 106 FGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFG-ENHAIMGVAFTWVM 164
Query: 188 IVLTAVP 194
+ A P
Sbjct: 165 ALACAAP 171
>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted)
pdb|1LN6|A Chain A, Structure Of Bovine Rhodopsin (Metarhodopsin Ii)
pdb|3CAP|A Chain A, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3CAP|B Chain B, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3C9L|A Chain A, Structure Of Ground-State Bovine Rhodospin In A Hexagonal
Crystal Form
pdb|1F88|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1F88|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|3DQB|A Chain A, Crystal Structure Of The Active G-protein-coupled Receptor
Opsin In Complex With A C-terminal Peptide Derived From
The Galpha Subunit Of Transducin
pdb|3PQR|A Chain A, Crystal Structure Of Metarhodopsin Ii In Complex With A
C-Terminal Peptide Derived From The Galpha Subunit Of
Transducin
pdb|3PXO|A Chain A, Crystal Structure Of Metarhodopsin Ii
Length = 348
Score = 31.2 bits (69), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 14/67 (20%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 130 FGDVWCKM--YLIVVTAYASVYTLVLMSLDRFLAVVHPIASMSVRTERNALKAILITWIV 187
FG C + + + ++++LV+++++R++ V P+++ E +A+ + TW++
Sbjct: 105 FGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFG-ENHAIMGVAFTWVM 163
Query: 188 IVLTAVP 194
+ A P
Sbjct: 164 ALACAAP 170
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.135 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,454,244
Number of Sequences: 62578
Number of extensions: 192428
Number of successful extensions: 508
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 457
Number of HSP's gapped (non-prelim): 40
length of query: 318
length of database: 14,973,337
effective HSP length: 99
effective length of query: 219
effective length of database: 8,778,115
effective search space: 1922407185
effective search space used: 1922407185
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)