RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9274
(318 letters)
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
Length = 348
Score = 95.0 bits (235), Expect = 7e-23
Identities = 27/145 (18%), Positives = 66/145 (45%), Gaps = 2/145 (1%)
Query: 57 MERMVSIIVPIFFGIIIILGFFGNALVVVVVAFNQQMRSTTNLLIINLAIADLLFIVCCV 116
E ++ + ++I+LGF N L + V ++++R+ N +++NLA+ADL +
Sbjct: 32 AEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGF 91
Query: 117 PFTATDYVTTCWPFGDVWCKMYL--IVVTAYASVYTLVLMSLDRFLAVVHPIASMSVRTE 174
T + + FG C + + ++++LV+++++R++ V P+++
Sbjct: 92 TTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGEN 151
Query: 175 RNALKAILITWIVIVLTAVPVFNMH 199
+ + + A P+
Sbjct: 152 HAIMGVAFTWVMALACAAPPLVGWS 176
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 138
Score = 37.2 bits (86), Expect = 6e-04
Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 4/55 (7%)
Query: 244 EREVHEEEEEEEEEEEETKAKETKLKEKKKLGGGGGEEEEEEEEEEEEEEEEEEE 298
E E ++ EE K + KL +K + +E E E +E++
Sbjct: 74 EHEREVIQKAIEENNNFIKMAKEKLAQKMES----NKENREAHLAAMLERLQEKD 124
Score = 36.8 bits (85), Expect = 8e-04
Identities = 9/55 (16%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Query: 244 EREVHEEEEEEEEEEEETKAKETKLKEKKKLGGGGGEEEEEEEEEEEEEEEEEEE 298
+E+ ++ E + +E L + +E+++ EE + +E +E
Sbjct: 89 NFIKMAKEKLAQKMESNKENREAHLAAMLER-----LQEKDKHAEEVRKNKELKE 138
Score = 34.1 bits (78), Expect = 0.007
Identities = 9/49 (18%), Positives = 18/49 (36%)
Query: 250 EEEEEEEEEEETKAKETKLKEKKKLGGGGGEEEEEEEEEEEEEEEEEEE 298
+++ E EE + LK + E ++ EE + +E
Sbjct: 48 QKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKE 96
Score = 33.3 bits (76), Expect = 0.012
Identities = 11/49 (22%), Positives = 20/49 (40%)
Query: 250 EEEEEEEEEEETKAKETKLKEKKKLGGGGGEEEEEEEEEEEEEEEEEEE 298
EE +++ E E + K + + K L E E ++ EE +
Sbjct: 45 EEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKM 93
Score = 32.5 bits (74), Expect = 0.021
Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 6/58 (10%)
Query: 241 KGGEREVHEEEEEEEEEEEETKAKETKLKEKKKLGGGGGEEEEEEEEEEEEEEEEEEE 298
+ + + E +++ E EE K +E +L + E+ E E E ++ EE
Sbjct: 38 RRRDPSLEEIQKKLEAAEERRKYQEAELLKHLA------EKREHEREVIQKAIEENNN 89
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
protein 1 (GBP1), C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 300
Score = 35.9 bits (82), Expect = 0.004
Identities = 8/55 (14%), Positives = 22/55 (40%)
Query: 244 EREVHEEEEEEEEEEEETKAKETKLKEKKKLGGGGGEEEEEEEEEEEEEEEEEEE 298
E+E+ E + E + K ++ +++ +E ++ E+ E +
Sbjct: 203 EKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRV 257
Score = 35.9 bits (82), Expect = 0.005
Identities = 11/56 (19%), Positives = 27/56 (48%), Gaps = 7/56 (12%)
Query: 244 EREVHEEEEEEEEEEEETKAKETKLKEKKKLGGGGGEEEEEEEEEEEEEEEEEEEI 299
E E + + +E+E + KL+E+++L +E ++E + E +++
Sbjct: 248 LTEKMENDRVQLLKEQE-RTLALKLQEQEQL------LKEGFQKESRIMKNEIQDL 296
Score = 33.9 bits (77), Expect = 0.021
Identities = 11/65 (16%), Positives = 24/65 (36%), Gaps = 3/65 (4%)
Query: 234 QSENDYCKGGEREVHEEEEEEEEEEEETKAKETKLKEKKKLGGGGGEEEEEEEEEEEEEE 293
+ E + + E + + E+ + KE +E K E+ E + + +E+
Sbjct: 207 EVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLT---EKMENDRVQLLKEQ 263
Query: 294 EEEEE 298
E
Sbjct: 264 ERTLA 268
Score = 33.6 bits (76), Expect = 0.025
Identities = 6/56 (10%), Positives = 23/56 (41%), Gaps = 8/56 (14%)
Query: 244 EREVHEEEEEEEEEEEETKAKETKLKEKKKLGGGGGEEEEEEEEEEEEEEEEEEEI 299
E + + +E+E ++ +L ++ ++E + E ++ + ++
Sbjct: 253 ENDRVQLLKEQERTLALKLQEQEQLLKEG--------FQKESRIMKNEIQDLQTKM 300
>d1ofcx3 a.187.1.1 (X:697-798) HAND domain of the nucleosome
remodeling ATPase ISWI {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 102
Score = 31.3 bits (71), Expect = 0.039
Identities = 12/57 (21%), Positives = 20/57 (35%), Gaps = 6/57 (10%)
Query: 248 HEEEEEEEEEEEETKAKETKLKEKKKLGGGGGEEEEEEEEEEEEE------EEEEEE 298
E ++E K K K G + + EE+ + + EEE +E
Sbjct: 36 PPRLFELLDQEIYYFRKTVGYKVPKNTELGSDATKVQREEQRKIDEAEPLTEEEIQE 92
Score = 25.2 bits (55), Expect = 4.5
Identities = 4/20 (20%), Positives = 10/20 (50%)
Query: 280 EEEEEEEEEEEEEEEEEEEI 299
+ E + + + EE+ +I
Sbjct: 60 KNTELGSDATKVQREEQRKI 79
>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 301
Score = 30.4 bits (68), Expect = 0.23
Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 15/60 (25%)
Query: 243 GEREVHEEEEEEEEEEEETKAKETKLKEKKKLGGGGGEEEEEEEEEEEEEEEEEEEIGGV 302
G+ + E+ + +E E+ E +EEE+ + + EEE++ G+
Sbjct: 72 GQEQPKPEQIAKGQEIVESL---------------NETELLVDEEEKAQNDSEEEQVKGI 116
Score = 25.7 bits (56), Expect = 7.6
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Query: 249 EEEEEEEEEEEETK--AKETKLKEKKK--LGGGGGEEEEEEEEEEEEEEEEEEE 298
E+E + E E E K K + E++ + G + E+ + +E E E
Sbjct: 41 EKEFQVEMFELENKFLQKYKPIWEQRSRIISGQEQPKPEQIAKGQEIVESLNET 94
>d2fgea3 d.185.1.1 (A:272-539) Presequence protease 1, PREP1 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 268
Score = 29.6 bits (66), Expect = 0.42
Identities = 9/52 (17%), Positives = 21/52 (40%), Gaps = 8/52 (15%)
Query: 250 EEEEEEEEEEETKAKETKL--KEKKKLGGGGGEEEEEEEEEEEEEEEEEEEI 299
+EE EE+ + + + ++ +L EE + ++E + E
Sbjct: 217 ATQEEVEEKNILEKVKAAMTEEDLAEL------ARATEELKLKQETPDPPEA 262
>d1gsma2 b.1.1.4 (A:91-206) Mucosal addressin cell adhesion
molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId:
9606]}
Length = 116
Score = 28.0 bits (62), Expect = 0.58
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 272 KKLGGGGGEEEEEEEEEEEEEEEEEE 297
++L G E +EEEEE + +E+
Sbjct: 44 QELEGAQALGPEVQEEEEEPQGDEDV 69
Score = 26.4 bits (58), Expect = 2.3
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 277 GGGEEEEEEEEEEEEEEEEEEE 298
G + E +EEEEE + +E+
Sbjct: 47 EGAQALGPEVQEEEEEPQGDED 68
>d1p32a_ d.25.1.1 (A:) Acidic mitochondrial matrix protein p32
{Human (Homo sapiens) [TaxId: 9606]}
Length = 209
Score = 28.8 bits (64), Expect = 0.61
Identities = 14/76 (18%), Positives = 29/76 (38%), Gaps = 10/76 (13%)
Query: 244 EREVHEEEEEEEEEEE-ETKAKETKLKEKKKLGG---------GGGEEEEEEEEEEEEEE 293
ER++ + + + E + T+ K +K+ G + EEE +
Sbjct: 20 ERKIQKHKTLPKMSGGWELELNGTEAKLVRKVAGEKITVTFNINNSIPPTFDGEEEPSQG 79
Query: 294 EEEEEIGGVVVSAVDF 309
++ EE + S +F
Sbjct: 80 QKVEEQEPELTSTPNF 95
>d2crua1 a.5.6.1 (A:8-112) Programmed cell death protein 5 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 105
Score = 27.7 bits (62), Expect = 0.67
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 264 KETKLKEKKKLGGGGGEEEEEEEEEEEEEEEE 295
+ +L E + G G+ ++E + E E
Sbjct: 2 RRQRLAELQAKHGDPGDAAQQEAKHREAEMRN 33
>d1us7b_ a.205.1.1 (B:) Hsp90 co-chaperone CDC37 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 201
Score = 28.6 bits (64), Expect = 0.76
Identities = 11/52 (21%), Positives = 25/52 (48%), Gaps = 7/52 (13%)
Query: 249 EEEEEEEEEEEETKAKETKLKEKKKLGGGGGEEEEEEEEEEEEEEEEEEEIG 300
+ + E +E +A + +++ + K E+ +E EEEE ++ +G
Sbjct: 97 ADRQYMEGFNDELEAFKERVRGRAK-------LRIEKAMKEYEEEERKKRLG 141
Score = 27.0 bits (60), Expect = 2.5
Identities = 10/51 (19%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Query: 248 HEEEEEEEEEEEETKAK-ETKLKEKKKLGGGGGEEEEEEEEEEEEEEEEEE 297
+ E +E E K + + K + + EEEE ++ + E
Sbjct: 99 RQYMEGFNDELEAFKERVRGRAKLRIEKAMKEYEEEERKKRLGPGGLDPVE 149
>d1siga_ a.177.1.1 (A:) Sigma70 {Escherichia coli [TaxId: 562]}
Length = 334
Score = 28.7 bits (63), Expect = 0.91
Identities = 8/47 (17%), Positives = 22/47 (46%)
Query: 253 EEEEEEEETKAKETKLKEKKKLGGGGGEEEEEEEEEEEEEEEEEEEI 299
+ EE+ T + + +E+E+EE+ +++ +++ I
Sbjct: 54 VDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSI 100
Score = 27.6 bits (60), Expect = 2.3
Identities = 7/46 (15%), Positives = 19/46 (41%)
Query: 250 EEEEEEEEEEETKAKETKLKEKKKLGGGGGEEEEEEEEEEEEEEEE 295
+ EE+ T ++ L E+EE+ +++ +++
Sbjct: 54 VDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNS 99
Score = 27.6 bits (60), Expect = 2.4
Identities = 7/53 (13%), Positives = 21/53 (39%)
Query: 245 REVHEEEEEEEEEEEETKAKETKLKEKKKLGGGGGEEEEEEEEEEEEEEEEEE 297
++ + EE+ E + E+E+EE+ +++ +++
Sbjct: 47 SDLITGFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNS 99
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 332
Score = 28.0 bits (62), Expect = 1.3
Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 231 TIFQSENDYCKGGEREVHEEEEEEEEEEEETKAK-ETKLKEKKKL 274
F +++ + V E ++ E EE+ +AK + EK++L
Sbjct: 288 EFFMDLHNFRNMFLQAVKENQKRRETEEKMRRAKLAKEKAEKERL 332
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
DNA-binding fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 223
Score = 27.4 bits (61), Expect = 1.8
Identities = 22/106 (20%), Positives = 41/106 (38%), Gaps = 15/106 (14%)
Query: 201 EVSYTYASELHTACVFLDLDPVNRPDGYNKTIFQSENDYCKGGEREVHEEEEEEEEEEEE 260
EV+ +A+ L + +PV + K F K ++ E +E +
Sbjct: 43 EVAGFFAALLESDHA---KNPV-----FQKNFFNDFLQVLKESGGPLNGIEIKEFSRCDF 94
Query: 261 TKAKE--TKLKEKKKLGGGGGEEEEEEEEEEEEEEEEEEEIGGVVV 304
TK + KE+KK +E+++ E E+ EE+ +
Sbjct: 95 TKMFDYFQLQKEQKKQ-----LTSQEKKQIRLEREKFEEDYKFCEL 135
>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}
Length = 267
Score = 27.6 bits (60), Expect = 2.0
Identities = 16/79 (20%), Positives = 28/79 (35%), Gaps = 2/79 (2%)
Query: 221 PVNRPDGYNKTIFQSENDYCKGGEREVHEEEEEEEEEEEETKAKETKLKEKKKLGGGGGE 280
P++ P + D G EE E E E + + + +++ L
Sbjct: 151 PIDLPLYEGGK-WVGLIDVFHGKAYRYENGEEREAEVPPEERERVQRFRQEV-LEAIVET 208
Query: 281 EEEEEEEEEEEEEEEEEEI 299
+E E+ E EE E +
Sbjct: 209 DEGLLEKYLEGEEVTGEAL 227
>d2es4d1 a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB)
{Burkholderia glumae [TaxId: 337]}
Length = 280
Score = 27.3 bits (60), Expect = 2.2
Identities = 3/55 (5%), Positives = 15/55 (27%)
Query: 244 EREVHEEEEEEEEEEEETKAKETKLKEKKKLGGGGGEEEEEEEEEEEEEEEEEEE 298
ER + E++ + + +++ + + ++
Sbjct: 141 ERIRIANDTTLSPEQKAARLAALDAQLTPDERAQQAALHAQQDAVTKIADLQKAG 195
>d2d8va1 g.43.1.1 (A:8-61) Zinc finger FYVE domain-containing
protein 19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 54
Score = 24.5 bits (53), Expect = 3.7
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 239 YCKGGEREVHEEEEEEEEEEEETKAKETKLKE 270
YC RE H+ + +E + + +E
Sbjct: 23 YCARCFREGHDNFDLKEHQTSPYHPRR-PCQE 53
>d2j01t1 b.34.5.6 (T:1-138) Ribosomal protein L19 {Thermus
thermophilus [TaxId: 274]}
Length = 138
Score = 25.7 bits (56), Expect = 4.4
Identities = 5/34 (14%), Positives = 12/34 (35%)
Query: 260 ETKAKETKLKEKKKLGGGGGEEEEEEEEEEEEEE 293
+E + K + + E +EE ++
Sbjct: 104 NLSDREIRRKLRADRKRIDQDRAAERAAKEEAQK 137
>d1vlya1 b.44.2.1 (A:244-325) Hypothetical protein YgfZ, C-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 82
Score = 25.1 bits (55), Expect = 4.5
Identities = 10/39 (25%), Positives = 14/39 (35%)
Query: 277 GGGEEEEEEEEEEEEEEEEEEEIGGVVVSAVDFGSGGWW 315
G E E+ E + E G V++AV G
Sbjct: 10 GSASRLPEAGEDLELKMGENWRRTGTVLAAVKLEDGQVV 48
>d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal
domain {Bacillus stearothermophilus [TaxId: 1422]}
Length = 323
Score = 26.1 bits (56), Expect = 5.7
Identities = 4/16 (25%), Positives = 7/16 (43%)
Query: 280 EEEEEEEEEEEEEEEE 295
E E++ E+ E
Sbjct: 306 EAEDKTEKLAAALEHH 321
Score = 26.1 bits (56), Expect = 5.7
Identities = 4/16 (25%), Positives = 7/16 (43%)
Query: 281 EEEEEEEEEEEEEEEE 296
E E++ E+ E
Sbjct: 306 EAEDKTEKLAAALEHH 321
Score = 26.1 bits (56), Expect = 5.7
Identities = 4/16 (25%), Positives = 7/16 (43%)
Query: 282 EEEEEEEEEEEEEEEE 297
E E++ E+ E
Sbjct: 306 EAEDKTEKLAAALEHH 321
Score = 26.1 bits (56), Expect = 5.7
Identities = 4/16 (25%), Positives = 7/16 (43%)
Query: 283 EEEEEEEEEEEEEEEE 298
E E++ E+ E
Sbjct: 306 EAEDKTEKLAAALEHH 321
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading
enzyme) {Plasmodium falciparum, plasmepsin II [TaxId:
5833]}
Length = 329
Score = 26.2 bits (56), Expect = 6.2
Identities = 6/29 (20%), Positives = 12/29 (41%)
Query: 113 VCCVPFTATDYVTTCWPFGDVWCKMYLIV 141
+C + D+ + GD + + Y V
Sbjct: 284 LCMLNIIGLDFPVPTFILGDPFMRKYFTV 312
>d1qs0a_ c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B), PP
module {Pseudomonas putida [TaxId: 303]}
Length = 407
Score = 26.0 bits (56), Expect = 6.4
Identities = 8/51 (15%), Positives = 15/51 (29%)
Query: 248 HEEEEEEEEEEEETKAKETKLKEKKKLGGGGGEEEEEEEEEEEEEEEEEEE 298
+ ++ + + K+ L G EEE + E E
Sbjct: 316 DPSKYRPADDWSHFPLGDPIARLKQHLIKIGHWSEEEHQATTAEFEAAVIA 366
>d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1
{Thermotoga maritima [TaxId: 2336]}
Length = 333
Score = 25.8 bits (56), Expect = 8.1
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 254 EEEEEEETKAKETKLKEKKKLGGGGGEEEEEEEEEEEEEEEEEEEI 299
E + EE + ++KE ++ E EE E E E E+ E+E+
Sbjct: 28 EYAKIEEIENITNRIKETQEFI----ELLREEGENELEIEKYEKEL 69
>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943)
{Staphylococcus aureus [TaxId: 1280]}
Length = 185
Score = 25.4 bits (54), Expect = 8.9
Identities = 8/50 (16%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 249 EEEEEEEEEEEETKAKETKLKEKKKLGGGGGEEEEEEEEEEEEEEEEEEE 298
+++E + ++ K K+ + K +G E +E++++ E+ ++
Sbjct: 3 DKKEIKAYLKQVDKIKD-DEEPIKTVGKKIAELDEKKKKLTEDVNSKDTA 51
Score = 25.0 bits (53), Expect = 9.6
Identities = 7/43 (16%), Positives = 22/43 (51%)
Query: 257 EEEETKAKETKLKEKKKLGGGGGEEEEEEEEEEEEEEEEEEEI 299
+++E KA ++ + K ++ E +E++++ E++
Sbjct: 3 DKKEIKAYLKQVDKIKDDEEPIKTVGKKIAELDEKKKKLTEDV 45
>d1h7ca_ a.7.5.1 (A:) Tubulin chaperone cofactor A {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 24.2 bits (53), Expect = 9.3
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 249 EEEEEEEEEEEETKAKET 266
E E++ EE EE +A+
Sbjct: 80 ENEKDLEEAEEYKEARLV 97
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
N-terminal DNA-binding fragment {Human (Homo sapiens)
[TaxId: 9606]}
Length = 230
Score = 25.4 bits (56), Expect = 9.4
Identities = 14/98 (14%), Positives = 32/98 (32%), Gaps = 28/98 (28%)
Query: 201 EVSYTYASELHTACVFLDLDPVNRPDGYNKTIFQSENDYCKGGEREVHEE---------- 250
EV+ +A L + + K F+ E+ +
Sbjct: 55 EVATFFAKMLDHEYT---TKEI-----FRKNFFKDWRKEMTNEEKNIITNLSKCDFTQMS 106
Query: 251 ---EEEEEEEEEETKAKETKLKEKKKLGGGGGEEEEEE 285
+ + E ++ +K ++ K+KE+ E+ +E
Sbjct: 107 QYFKAQTEARKQMSKEEKLKIKEEN-------EKLLKE 137
>d1lr1a_ a.155.1.1 (A:) H1 protein (H-NS) {Escherichia coli [TaxId:
562]}
Length = 57
Score = 23.6 bits (51), Expect = 9.7
Identities = 7/19 (36%), Positives = 7/19 (36%)
Query: 280 EEEEEEEEEEEEEEEEEEE 298
E EEE E EE
Sbjct: 37 NERREEESAAAAEVEERTR 55
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.136 0.404
Gapped
Lambda K H
0.267 0.0567 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,291,260
Number of extensions: 63501
Number of successful extensions: 635
Number of sequences better than 10.0: 1
Number of HSP's gapped: 443
Number of HSP's successfully gapped: 62
Length of query: 318
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 233
Effective length of database: 1,240,546
Effective search space: 289047218
Effective search space used: 289047218
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.6 bits)