BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy9275
         (284 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4DZO|A Chain A, Structure Of Human Mad1 C-Terminal Domain Reveals Its
           Involvement In Kinetochore Targeting
 pdb|4DZO|B Chain B, Structure Of Human Mad1 C-Terminal Domain Reveals Its
           Involvement In Kinetochore Targeting
          Length = 123

 Score = 98.2 bits (243), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 49/119 (41%), Positives = 80/119 (67%), Gaps = 4/119 (3%)

Query: 162 KAAKLNNKIKSLELQGKRLREVYKAASQEFRETVYLLFGYKVD-RTNCMYKLASMYADGP 220
           + A+L  +++S EL+ +RL+EV++   QEFR+  Y L GY++D  T   Y+L S+YA+ P
Sbjct: 5   EVAELKKQVESAELKNQRLKEVFQTKIQEFRKACYTLTGYQIDITTENQYRLTSLYAEHP 64

Query: 221 DENLLFQSTE---GQLNLIETDYSKVLKPLLDLHLGRHHSIPMLLSALTQELFQRQTMS 276
            + L+F++T     +  L+ET++S  +  L+++HL R  SIP  LS+LT ELF RQT++
Sbjct: 65  GDCLIFKATSPSGSKXQLLETEFSHTVGELIEVHLRRQDSIPAFLSSLTLELFSRQTVA 123


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.130    0.355 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,009,920
Number of Sequences: 62578
Number of extensions: 247379
Number of successful extensions: 839
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 833
Number of HSP's gapped (non-prelim): 19
length of query: 284
length of database: 14,973,337
effective HSP length: 98
effective length of query: 186
effective length of database: 8,840,693
effective search space: 1644368898
effective search space used: 1644368898
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)