Query psy9275
Match_columns 284
No_of_seqs 146 out of 187
Neff 4.8
Searched_HMMs 46136
Date Fri Aug 16 23:18:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9275.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9275hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05557 MAD: Mitotic checkpoi 100.0 2.6E-52 5.7E-57 428.3 19.9 216 52-274 479-722 (722)
2 KOG4593|consensus 100.0 1.4E-43 3E-48 356.8 17.1 227 41-276 463-716 (716)
3 KOG4593|consensus 97.4 6.8E-05 1.5E-09 77.8 2.4 127 138-276 510-655 (716)
4 PF07106 TBPIP: Tat binding pr 94.4 0.35 7.5E-06 41.9 9.3 94 71-188 72-165 (169)
5 PRK09039 hypothetical protein; 93.7 1.3 2.9E-05 42.9 12.8 42 139-180 138-184 (343)
6 KOG0995|consensus 92.9 1.7 3.7E-05 45.2 12.6 62 138-199 308-380 (581)
7 PF12325 TMF_TATA_bd: TATA ele 92.6 1.2 2.6E-05 37.5 9.2 30 71-100 16-45 (120)
8 PF08317 Spc7: Spc7 kinetochor 92.4 1.9 4.2E-05 41.3 11.7 74 139-212 224-306 (325)
9 COG1579 Zn-ribbon protein, pos 92.2 7 0.00015 36.6 14.6 95 139-233 118-230 (239)
10 KOG4657|consensus 91.9 11 0.00024 35.3 17.8 122 139-265 94-230 (246)
11 TIGR03545 conserved hypothetic 91.8 0.77 1.7E-05 47.5 8.6 101 77-185 163-272 (555)
12 PRK10884 SH3 domain-containing 91.4 0.73 1.6E-05 42.0 7.2 77 75-182 90-167 (206)
13 TIGR00606 rad50 rad50. This fa 91.1 2.2 4.7E-05 48.1 11.9 63 139-201 889-963 (1311)
14 PF11932 DUF3450: Protein of u 89.8 16 0.00035 33.6 15.8 62 199-262 164-241 (251)
15 PRK09039 hypothetical protein; 89.3 4.4 9.6E-05 39.4 10.9 50 161-212 172-222 (343)
16 KOG0971|consensus 88.9 9.9 0.00021 42.0 13.9 35 76-110 323-357 (1243)
17 PF10473 CENP-F_leu_zip: Leuci 88.6 2.6 5.5E-05 36.5 7.8 29 74-102 20-48 (140)
18 PF08614 ATG16: Autophagy prot 88.1 5.3 0.00012 35.4 9.9 141 41-192 23-182 (194)
19 smart00787 Spc7 Spc7 kinetocho 87.9 21 0.00046 34.5 14.5 46 161-206 246-294 (312)
20 TIGR01010 BexC_CtrB_KpsE polys 87.8 13 0.00028 35.7 13.0 58 129-186 240-303 (362)
21 KOG0977|consensus 87.5 9.4 0.0002 39.8 12.4 21 139-159 170-190 (546)
22 PF00038 Filament: Intermediat 87.3 3.1 6.6E-05 38.9 8.3 56 139-196 97-152 (312)
23 KOG4603|consensus 86.9 7.7 0.00017 35.1 10.0 98 71-198 79-182 (201)
24 PRK09841 cryptic autophosphory 85.6 18 0.0004 38.3 13.8 52 128-179 336-388 (726)
25 PRK14127 cell division protein 85.4 2.3 5E-05 35.3 5.6 58 129-188 23-106 (109)
26 COG2433 Uncharacterized conser 85.4 7.4 0.00016 41.0 10.4 28 75-102 419-446 (652)
27 PF08172 CASP_C: CASP C termin 85.4 14 0.0003 34.7 11.4 104 74-182 2-128 (248)
28 PF07888 CALCOCO1: Calcium bin 84.7 23 0.0005 37.0 13.6 28 74-101 167-194 (546)
29 COG4026 Uncharacterized protei 83.5 4.1 8.9E-05 38.3 7.0 48 139-188 143-190 (290)
30 PF08317 Spc7: Spc7 kinetochor 83.4 16 0.00035 35.1 11.3 23 161-183 237-259 (325)
31 PF03962 Mnd1: Mnd1 family; I 83.3 33 0.00072 30.7 12.6 89 71-179 62-153 (188)
32 PF00038 Filament: Intermediat 83.3 27 0.00059 32.5 12.6 58 139-196 231-290 (312)
33 PF04849 HAP1_N: HAP1 N-termin 82.7 21 0.00045 34.8 11.6 112 75-192 94-230 (306)
34 PRK11281 hypothetical protein; 82.0 16 0.00035 41.1 12.0 136 52-187 98-253 (1113)
35 PRK11637 AmiB activator; Provi 81.9 28 0.00062 34.4 12.7 49 140-190 84-132 (428)
36 PF15070 GOLGA2L5: Putative go 81.4 9.8 0.00021 40.1 9.6 53 139-191 154-225 (617)
37 COG1579 Zn-ribbon protein, pos 80.4 40 0.00087 31.6 12.3 53 33-101 28-82 (239)
38 KOG0995|consensus 79.9 63 0.0014 34.0 14.6 36 163-198 355-390 (581)
39 COG3074 Uncharacterized protei 79.7 27 0.00059 27.3 9.1 57 138-200 18-74 (79)
40 PRK11519 tyrosine kinase; Prov 79.6 39 0.00085 35.8 13.5 49 128-176 336-385 (719)
41 PF15070 GOLGA2L5: Putative go 79.1 16 0.00034 38.6 10.3 44 139-182 88-136 (617)
42 PF05911 DUF869: Plant protein 79.1 16 0.00035 39.5 10.5 104 74-192 137-289 (769)
43 TIGR03185 DNA_S_dndD DNA sulfu 78.7 85 0.0018 32.9 15.5 13 52-64 402-414 (650)
44 TIGR00219 mreC rod shape-deter 77.3 9 0.0002 36.3 7.2 43 136-183 64-106 (283)
45 COG1792 MreC Cell shape-determ 76.3 7.8 0.00017 36.8 6.5 45 136-186 64-108 (284)
46 KOG4673|consensus 76.0 51 0.0011 35.7 12.7 131 52-192 609-770 (961)
47 PF07926 TPR_MLP1_2: TPR/MLP1/ 75.7 27 0.00058 29.2 9.0 27 76-102 8-34 (132)
48 TIGR03017 EpsF chain length de 75.7 83 0.0018 30.7 13.8 18 21-38 133-150 (444)
49 PF07106 TBPIP: Tat binding pr 75.3 10 0.00022 32.8 6.5 57 41-99 81-137 (169)
50 PF07989 Microtub_assoc: Micro 75.2 32 0.00069 26.6 8.5 52 138-189 7-71 (75)
51 PF12711 Kinesin-relat_1: Kine 74.7 2.7 5.9E-05 33.6 2.5 40 128-168 41-84 (86)
52 PF12128 DUF3584: Protein of u 74.5 52 0.0011 37.1 13.3 24 75-98 729-752 (1201)
53 PHA02562 46 endonuclease subun 74.4 1E+02 0.0022 31.0 14.8 22 41-64 176-197 (562)
54 TIGR01005 eps_transp_fam exopo 74.1 88 0.0019 33.1 14.3 26 76-101 235-260 (754)
55 PF04949 Transcrip_act: Transc 73.9 44 0.00095 29.6 9.9 37 161-197 84-120 (159)
56 PRK11020 hypothetical protein; 73.2 24 0.00053 29.8 7.9 37 161-197 31-67 (118)
57 PRK11637 AmiB activator; Provi 72.2 55 0.0012 32.4 11.6 27 75-101 100-126 (428)
58 PF06005 DUF904: Protein of un 71.9 33 0.00071 26.4 7.8 37 138-183 18-54 (72)
59 PRK01156 chromosome segregatio 71.9 1.3E+02 0.0028 32.5 15.1 23 248-270 850-873 (895)
60 PF09789 DUF2353: Uncharacteri 71.7 67 0.0015 31.4 11.7 39 139-186 190-228 (319)
61 KOG0971|consensus 71.6 1.4E+02 0.003 33.6 14.9 13 186-198 525-537 (1243)
62 KOG4360|consensus 70.9 56 0.0012 34.2 11.3 81 75-156 94-184 (596)
63 KOG0933|consensus 70.8 47 0.001 37.3 11.3 28 75-102 784-811 (1174)
64 PF04111 APG6: Autophagy prote 70.3 51 0.0011 31.7 10.6 48 139-186 51-103 (314)
65 PF12325 TMF_TATA_bd: TATA ele 70.3 47 0.001 28.0 9.1 21 169-189 97-117 (120)
66 PF10174 Cast: RIM-binding pro 70.2 45 0.00097 36.3 11.1 62 139-200 337-424 (775)
67 PF03962 Mnd1: Mnd1 family; I 69.6 49 0.0011 29.6 9.7 21 139-159 70-90 (188)
68 COG2433 Uncharacterized conser 68.6 63 0.0014 34.4 11.4 38 139-185 475-512 (652)
69 KOG0963|consensus 68.4 39 0.00085 35.8 9.9 62 40-101 240-308 (629)
70 KOG4643|consensus 67.6 75 0.0016 35.8 12.1 64 38-101 263-331 (1195)
71 PRK03918 chromosome segregatio 67.0 1.5E+02 0.0032 31.7 14.2 10 261-270 848-857 (880)
72 KOG0977|consensus 66.3 27 0.00059 36.4 8.3 66 139-206 149-225 (546)
73 PRK04778 septation ring format 66.3 28 0.00061 35.9 8.4 40 24-65 19-58 (569)
74 KOG2129|consensus 66.0 1.7E+02 0.0036 30.2 13.4 22 139-160 254-275 (552)
75 PF10481 CENP-F_N: Cenp-F N-te 65.7 20 0.00044 34.6 6.6 22 73-94 13-34 (307)
76 PRK10884 SH3 domain-containing 65.6 61 0.0013 29.6 9.6 54 140-193 95-157 (206)
77 PF09726 Macoilin: Transmembra 65.4 81 0.0017 33.9 11.8 26 76-101 472-497 (697)
78 PRK15422 septal ring assembly 65.4 55 0.0012 25.9 7.9 57 138-200 18-74 (79)
79 PF15294 Leu_zip: Leucine zipp 65.1 17 0.00038 34.8 6.1 37 139-175 133-174 (278)
80 KOG4674|consensus 64.5 89 0.0019 37.2 12.5 29 161-189 1353-1381(1822)
81 KOG0994|consensus 63.8 28 0.0006 39.7 8.0 71 30-102 1185-1256(1758)
82 PF07061 Swi5: Swi5; InterPro 63.8 41 0.00089 26.5 7.1 55 140-201 2-61 (83)
83 PF08581 Tup_N: Tup N-terminal 63.6 70 0.0015 25.1 8.4 55 139-193 5-71 (79)
84 PF15035 Rootletin: Ciliary ro 63.5 1.1E+02 0.0024 27.3 13.1 112 76-198 14-132 (182)
85 PF09726 Macoilin: Transmembra 63.0 58 0.0012 35.0 10.1 94 75-181 542-649 (697)
86 PRK02224 chromosome segregatio 62.7 1.2E+02 0.0027 32.4 12.7 8 207-214 762-769 (880)
87 KOG4571|consensus 62.6 28 0.00061 33.7 7.0 39 139-186 249-287 (294)
88 PRK15178 Vi polysaccharide exp 62.5 94 0.002 31.7 11.1 57 75-156 283-339 (434)
89 PF03915 AIP3: Actin interacti 62.3 71 0.0015 32.4 10.2 107 77-195 150-288 (424)
90 PF04102 SlyX: SlyX; InterPro 62.0 22 0.00047 26.8 5.0 23 136-158 30-52 (69)
91 PF14362 DUF4407: Domain of un 61.4 1.4E+02 0.0031 27.9 11.9 100 74-195 138-238 (301)
92 TIGR02231 conserved hypothetic 61.1 43 0.00094 34.0 8.6 30 72-101 72-101 (525)
93 KOG0976|consensus 61.0 1.9E+02 0.0042 32.2 13.4 31 163-193 178-208 (1265)
94 PRK13922 rod shape-determining 61.0 33 0.00072 31.7 7.2 43 136-184 67-109 (276)
95 PF15254 CCDC14: Coiled-coil d 60.8 13 0.00027 40.4 4.7 103 75-182 452-557 (861)
96 PRK04325 hypothetical protein; 60.7 32 0.0007 26.4 5.9 20 139-158 38-57 (74)
97 KOG1655|consensus 60.2 35 0.00076 31.5 6.9 107 74-183 29-148 (218)
98 PF00261 Tropomyosin: Tropomyo 60.0 1.4E+02 0.003 27.3 14.7 63 139-201 170-237 (237)
99 KOG0018|consensus 59.9 1.6E+02 0.0034 33.5 12.8 28 178-206 773-800 (1141)
100 PF01166 TSC22: TSC-22/dip/bun 59.9 17 0.00037 27.2 4.0 32 71-102 14-45 (59)
101 PF09730 BicD: Microtubule-ass 59.9 25 0.00054 37.9 6.8 53 139-191 98-161 (717)
102 KOG1029|consensus 59.6 2.6E+02 0.0055 31.2 14.0 25 182-206 566-595 (1118)
103 COG1196 Smc Chromosome segrega 59.6 1.5E+02 0.0032 33.5 13.0 38 163-200 993-1031(1163)
104 KOG2751|consensus 59.6 1.9E+02 0.0042 29.6 12.5 93 75-198 147-241 (447)
105 PF07544 Med9: RNA polymerase 59.3 47 0.001 25.8 6.7 48 139-186 29-77 (83)
106 TIGR02338 gimC_beta prefoldin, 59.3 94 0.002 25.1 10.1 33 163-195 76-108 (110)
107 PRK13182 racA polar chromosome 59.2 22 0.00047 31.7 5.3 49 139-187 93-151 (175)
108 PF07412 Geminin: Geminin; In 59.0 47 0.001 30.5 7.5 67 128-204 101-174 (200)
109 TIGR03007 pepcterm_ChnLen poly 59.0 1.6E+02 0.0035 29.3 12.1 28 74-101 200-227 (498)
110 KOG0245|consensus 58.7 26 0.00057 39.3 6.8 68 139-206 362-449 (1221)
111 PF09738 DUF2051: Double stran 58.1 31 0.00067 33.4 6.5 72 21-96 54-137 (302)
112 PF06785 UPF0242: Uncharacteri 57.3 74 0.0016 31.7 9.0 71 17-101 45-115 (401)
113 PF15188 CCDC-167: Coiled-coil 57.2 76 0.0017 25.4 7.6 26 76-101 3-28 (85)
114 TIGR02169 SMC_prok_A chromosom 57.1 1.1E+02 0.0024 33.2 11.3 42 165-206 1004-1046(1164)
115 PF05667 DUF812: Protein of un 57.0 42 0.00091 35.4 7.8 51 52-102 423-478 (594)
116 PF04420 CHD5: CHD5-like prote 57.0 61 0.0013 28.1 7.7 60 139-198 41-103 (161)
117 PLN02939 transferase, transfer 56.9 1.8E+02 0.004 32.6 12.8 143 42-200 229-397 (977)
118 TIGR03185 DNA_S_dndD DNA sulfu 56.1 2.6E+02 0.0057 29.3 13.5 16 201-217 526-541 (650)
119 KOG0250|consensus 55.8 3.6E+02 0.0078 30.7 15.4 13 26-38 654-666 (1074)
120 KOG0996|consensus 55.7 1.4E+02 0.003 34.3 11.6 44 163-206 860-905 (1293)
121 KOG0250|consensus 55.3 46 0.001 37.4 8.0 28 71-98 330-357 (1074)
122 KOG0999|consensus 54.3 92 0.002 33.1 9.5 129 71-206 43-197 (772)
123 PF05622 HOOK: HOOK protein; 54.2 4.2 9.1E-05 43.0 0.0 15 80-94 310-324 (713)
124 PF10174 Cast: RIM-binding pro 54.0 1.3E+02 0.0029 32.8 11.1 62 76-160 512-584 (775)
125 TIGR03752 conj_TIGR03752 integ 53.9 1.6E+02 0.0034 30.5 11.0 31 71-101 56-89 (472)
126 PRK02793 phi X174 lysis protei 53.9 48 0.001 25.3 5.8 22 138-159 36-57 (72)
127 PRK04406 hypothetical protein; 52.8 67 0.0014 24.8 6.5 22 137-158 38-59 (75)
128 KOG3433|consensus 52.4 1.2E+02 0.0027 27.7 9.0 105 74-202 77-185 (203)
129 PF15290 Syntaphilin: Golgi-lo 52.2 47 0.001 32.2 6.6 47 140-186 84-135 (305)
130 COG5185 HEC1 Protein involved 52.2 1.9E+02 0.0041 30.3 11.2 26 76-101 335-360 (622)
131 PRK00736 hypothetical protein; 52.1 55 0.0012 24.7 5.8 20 139-158 34-53 (68)
132 PF10267 Tmemb_cc2: Predicted 52.0 2.7E+02 0.0058 28.1 12.4 13 52-64 230-242 (395)
133 PRK00295 hypothetical protein; 51.6 57 0.0012 24.6 5.8 21 138-158 33-53 (68)
134 KOG0243|consensus 51.6 1.3E+02 0.0028 34.0 10.6 30 72-101 442-471 (1041)
135 PF12178 INCENP_N: Chromosome 51.4 15 0.00032 25.3 2.3 20 177-196 4-23 (38)
136 TIGR02449 conserved hypothetic 51.1 60 0.0013 24.7 5.8 41 139-181 15-59 (65)
137 KOG0996|consensus 50.5 2E+02 0.0044 33.1 11.9 8 258-265 708-715 (1293)
138 PRK02119 hypothetical protein; 50.4 71 0.0015 24.5 6.2 22 137-158 36-57 (73)
139 PF10458 Val_tRNA-synt_C: Valy 49.4 1E+02 0.0023 22.7 7.9 60 78-157 4-65 (66)
140 PF09744 Jnk-SapK_ap_N: JNK_SA 49.3 93 0.002 27.3 7.6 55 139-195 97-151 (158)
141 PF14988 DUF4515: Domain of un 49.2 1.2E+02 0.0026 27.6 8.6 42 139-182 157-198 (206)
142 PF13851 GAS: Growth-arrest sp 49.2 2E+02 0.0044 25.9 13.4 51 41-101 14-64 (201)
143 PF15619 Lebercilin: Ciliary p 49.0 1.9E+02 0.0041 26.1 9.8 37 161-197 139-175 (194)
144 PF06785 UPF0242: Uncharacteri 48.6 1.6E+02 0.0034 29.5 9.7 113 74-194 71-195 (401)
145 PF04156 IncA: IncA protein; 47.6 1.3E+02 0.0028 26.0 8.3 57 139-195 89-150 (191)
146 PF04508 Pox_A_type_inc: Viral 47.5 17 0.00037 22.4 1.9 19 72-90 2-20 (23)
147 PF07200 Mod_r: Modifier of ru 47.4 1.7E+02 0.0037 24.5 9.1 54 139-194 35-88 (150)
148 PF05483 SCP-1: Synaptonemal c 47.3 1.2E+02 0.0027 32.8 9.3 120 75-196 531-664 (786)
149 PF06160 EzrA: Septation ring 46.6 53 0.0011 34.0 6.6 33 32-64 21-53 (560)
150 TIGR01010 BexC_CtrB_KpsE polys 46.4 2.1E+02 0.0046 27.4 10.3 19 139-157 215-233 (362)
151 KOG1029|consensus 46.3 2.3E+02 0.0049 31.6 11.1 17 139-155 532-548 (1118)
152 COG4942 Membrane-bound metallo 46.3 1.6E+02 0.0035 30.0 9.6 43 52-94 63-110 (420)
153 PF05701 WEMBL: Weak chloropla 46.1 58 0.0013 33.4 6.7 105 72-179 303-418 (522)
154 PF10241 KxDL: Uncharacterized 46.1 1.4E+02 0.0031 23.3 8.8 52 136-187 20-83 (88)
155 KOG0161|consensus 45.8 90 0.0019 37.5 8.8 97 52-160 1776-1879(1930)
156 COG4026 Uncharacterized protei 45.6 1.1E+02 0.0023 29.1 7.7 20 139-158 171-190 (290)
157 KOG4674|consensus 45.5 3.5E+02 0.0076 32.6 13.2 59 139-197 767-834 (1822)
158 COG3883 Uncharacterized protei 45.0 1.4E+02 0.0031 28.5 8.6 28 161-188 80-107 (265)
159 PF05769 DUF837: Protein of un 44.9 2.3E+02 0.005 25.3 9.8 22 139-160 71-92 (181)
160 PRK02224 chromosome segregatio 44.3 4.3E+02 0.0094 28.3 13.3 16 139-154 385-400 (880)
161 PF05667 DUF812: Protein of un 44.3 1.6E+02 0.0035 31.1 9.7 15 82-96 332-346 (594)
162 PHA00728 hypothetical protein 44.2 23 0.0005 30.4 2.9 24 137-160 4-27 (151)
163 KOG0933|consensus 43.9 5E+02 0.011 29.7 13.4 52 138-189 448-500 (1174)
164 PF11932 DUF3450: Protein of u 43.7 1.9E+02 0.004 26.5 9.1 34 175-211 131-169 (251)
165 TIGR02680 conserved hypothetic 43.6 3.9E+02 0.0084 31.0 13.2 74 75-158 280-353 (1353)
166 PRK13729 conjugal transfer pil 43.4 70 0.0015 33.0 6.7 17 139-155 105-121 (475)
167 PF07407 Seadorna_VP6: Seadorn 43.0 80 0.0017 31.4 6.7 22 139-160 40-61 (420)
168 KOG3119|consensus 42.6 60 0.0013 30.6 5.8 62 30-102 185-246 (269)
169 PF12718 Tropomyosin_1: Tropom 42.5 26 0.00056 30.0 3.1 27 75-101 77-103 (143)
170 PF04977 DivIC: Septum formati 42.4 68 0.0015 23.5 5.0 27 76-102 22-48 (80)
171 smart00338 BRLZ basic region l 42.1 94 0.002 22.6 5.6 37 139-184 27-63 (65)
172 PF05103 DivIVA: DivIVA protei 41.9 31 0.00068 27.9 3.3 56 128-183 17-82 (131)
173 PF07888 CALCOCO1: Calcium bin 41.6 4.5E+02 0.0097 27.8 13.0 33 71-103 283-315 (546)
174 COG1196 Smc Chromosome segrega 41.4 3.4E+02 0.0073 30.7 12.2 24 163-186 886-909 (1163)
175 PF12128 DUF3584: Protein of u 41.3 4.8E+02 0.01 29.7 13.4 30 73-102 602-631 (1201)
176 COG1382 GimC Prefoldin, chaper 41.2 2.2E+02 0.0048 24.1 9.3 62 139-200 31-112 (119)
177 PF10458 Val_tRNA-synt_C: Valy 41.1 1.4E+02 0.0031 21.9 6.9 45 136-180 8-65 (66)
178 PF02388 FemAB: FemAB family; 41.0 1.6E+02 0.0034 29.2 8.7 55 130-184 239-296 (406)
179 PF12329 TMF_DNA_bd: TATA elem 40.9 1.4E+02 0.003 22.9 6.5 46 139-184 13-70 (74)
180 PF09789 DUF2353: Uncharacteri 40.7 86 0.0019 30.7 6.6 25 76-100 77-101 (319)
181 PF13118 DUF3972: Protein of u 40.4 63 0.0014 27.6 5.0 34 138-171 85-123 (126)
182 PF05557 MAD: Mitotic checkpoi 40.0 31 0.00066 36.6 3.8 47 52-98 410-460 (722)
183 TIGR02894 DNA_bind_RsfA transc 39.9 1.4E+02 0.003 26.6 7.2 44 140-185 99-142 (161)
184 PLN03229 acetyl-coenzyme A car 39.9 3.3E+02 0.0071 29.9 11.2 38 52-89 433-473 (762)
185 PF05546 She9_MDM33: She9 / Md 39.7 1.8E+02 0.004 26.8 8.2 32 71-102 32-63 (207)
186 KOG1853|consensus 39.7 2.7E+02 0.0059 27.0 9.5 72 81-160 48-120 (333)
187 PRK00286 xseA exodeoxyribonucl 39.6 3.9E+02 0.0084 26.4 17.4 89 146-235 335-435 (438)
188 KOG0994|consensus 39.5 4.4E+02 0.0096 30.8 12.3 64 135-198 1228-1305(1758)
189 PF12718 Tropomyosin_1: Tropom 39.5 2.4E+02 0.0053 24.1 12.8 31 72-102 36-66 (143)
190 KOG0976|consensus 39.3 2E+02 0.0044 32.1 9.5 40 161-200 483-522 (1265)
191 PF12017 Tnp_P_element: Transp 38.7 77 0.0017 29.6 5.7 119 142-276 15-134 (236)
192 PF06156 DUF972: Protein of un 38.5 1.7E+02 0.0037 24.1 7.2 21 139-159 37-57 (107)
193 PF02541 Ppx-GppA: Ppx/GppA ph 38.4 12 0.00026 34.5 0.5 48 188-236 73-127 (285)
194 KOG4603|consensus 38.3 1.7E+02 0.0037 26.6 7.6 14 57-70 13-26 (201)
195 PF14257 DUF4349: Domain of un 38.0 1.5E+02 0.0033 27.2 7.6 45 139-183 140-191 (262)
196 PRK10203 hypothetical protein; 37.9 1.8E+02 0.004 24.6 7.4 57 141-199 60-119 (122)
197 PRK10854 exopolyphosphatase; P 37.9 22 0.00047 36.3 2.2 48 188-235 98-151 (513)
198 KOG0963|consensus 37.4 4.3E+02 0.0092 28.4 11.3 25 244-268 427-451 (629)
199 PF13851 GAS: Growth-arrest sp 37.3 3.1E+02 0.0068 24.7 12.9 22 139-160 101-122 (201)
200 PRK09343 prefoldin subunit bet 37.0 2.4E+02 0.0052 23.3 9.6 60 139-198 32-115 (121)
201 PF07820 TraC: TraC-like prote 36.8 78 0.0017 25.7 4.7 58 140-197 4-65 (92)
202 smart00787 Spc7 Spc7 kinetocho 36.5 4E+02 0.0088 25.8 12.1 24 41-64 101-126 (312)
203 PF00170 bZIP_1: bZIP transcri 36.5 1.6E+02 0.0034 21.4 6.0 13 139-151 27-39 (64)
204 COG5493 Uncharacterized conser 36.5 3.6E+02 0.0078 25.2 10.7 64 168-237 95-168 (231)
205 PF14584 DUF4446: Protein of u 36.4 1.5E+02 0.0033 25.8 6.9 70 161-232 53-134 (151)
206 PTZ00449 104 kDa microneme/rho 36.4 55 0.0012 34.7 4.8 88 184-275 133-225 (943)
207 PRK04863 mukB cell division pr 36.2 8E+02 0.017 29.1 14.4 103 73-198 889-1029(1486)
208 KOG4807|consensus 35.7 1.7E+02 0.0036 30.0 7.8 18 139-156 457-474 (593)
209 PF09744 Jnk-SapK_ap_N: JNK_SA 35.7 3.1E+02 0.0066 24.1 9.1 59 141-199 85-148 (158)
210 PF10850 DUF2653: Protein of u 35.6 79 0.0017 25.7 4.6 79 189-272 8-87 (91)
211 KOG4360|consensus 35.5 5.6E+02 0.012 27.1 12.1 52 139-192 248-299 (596)
212 PF05308 Mito_fiss_reg: Mitoch 35.3 39 0.00084 31.9 3.3 27 76-102 120-146 (253)
213 PF07334 IFP_35_N: Interferon- 35.1 66 0.0014 25.3 4.0 19 140-158 2-20 (76)
214 PF14662 CCDC155: Coiled-coil 35.1 3.6E+02 0.0078 24.7 12.5 21 139-159 103-123 (193)
215 PF04111 APG6: Autophagy prote 35.0 2.4E+02 0.0051 27.2 8.6 22 161-182 113-134 (314)
216 PF10211 Ax_dynein_light: Axon 34.9 1.4E+02 0.003 26.7 6.6 59 76-157 125-189 (189)
217 PHA02562 46 endonuclease subun 34.5 4.9E+02 0.011 26.1 14.8 25 77-101 298-322 (562)
218 PF09787 Golgin_A5: Golgin sub 34.5 5E+02 0.011 26.6 11.3 61 41-101 237-311 (511)
219 PF11363 DUF3164: Protein of u 34.5 2E+02 0.0044 26.0 7.6 98 163-274 26-132 (195)
220 PF05622 HOOK: HOOK protein; 33.9 14 0.00029 39.2 0.0 58 139-196 548-611 (713)
221 PF12958 DUF3847: Protein of u 33.9 1.6E+02 0.0036 23.5 6.1 42 139-182 2-48 (86)
222 PRK10929 putative mechanosensi 33.8 5.8E+02 0.013 29.2 12.4 49 139-187 181-234 (1109)
223 KOG1760|consensus 33.7 2.4E+02 0.0052 24.3 7.4 23 183-205 106-128 (131)
224 KOG1962|consensus 33.7 3.7E+02 0.0081 25.0 9.3 17 139-155 194-210 (216)
225 cd00584 Prefoldin_alpha Prefol 33.4 2.6E+02 0.0057 22.7 7.8 21 76-96 18-38 (129)
226 KOG4787|consensus 33.4 2.2E+02 0.0047 30.7 8.4 57 71-133 430-486 (852)
227 KOG0946|consensus 33.3 7.2E+02 0.016 27.9 12.4 26 165-190 803-828 (970)
228 PF05678 VQ: VQ motif; InterP 33.2 32 0.0007 22.5 1.7 16 186-201 10-25 (31)
229 PF14197 Cep57_CLD_2: Centroso 33.2 2E+02 0.0044 21.8 6.3 16 139-154 48-63 (69)
230 KOG3208|consensus 33.1 2.3E+02 0.005 26.7 7.8 103 74-197 8-111 (231)
231 PF05414 DUF1717: Viral domain 33.1 50 0.0011 26.8 3.1 20 187-206 27-46 (101)
232 PF07407 Seadorna_VP6: Seadorn 33.1 1.1E+02 0.0023 30.6 5.9 29 139-169 33-61 (420)
233 PF04849 HAP1_N: HAP1 N-termin 32.8 4.8E+02 0.01 25.5 13.9 28 74-101 163-190 (306)
234 PF09730 BicD: Microtubule-ass 32.7 2.7E+02 0.0059 30.2 9.3 30 73-102 29-58 (717)
235 PF01486 K-box: K-box region; 32.6 2.5E+02 0.0054 22.1 8.2 55 139-193 20-82 (100)
236 PF05377 FlaC_arch: Flagella a 32.4 2.1E+02 0.0045 21.2 6.5 28 161-188 21-48 (55)
237 TIGR02894 DNA_bind_RsfA transc 32.4 3.4E+02 0.0074 24.2 8.4 19 140-158 106-124 (161)
238 PF15619 Lebercilin: Ciliary p 32.4 3.3E+02 0.0072 24.5 8.6 32 161-192 125-156 (194)
239 PF05529 Bap31: B-cell recepto 32.4 2.3E+02 0.0049 24.8 7.5 30 161-190 161-190 (192)
240 PRK00846 hypothetical protein; 32.2 2.4E+02 0.0052 22.1 6.7 22 138-159 41-62 (77)
241 PF04880 NUDE_C: NUDE protein, 32.0 64 0.0014 28.7 3.9 19 139-157 25-43 (166)
242 PF05588 Botulinum_HA-17: Clos 31.9 62 0.0014 28.0 3.6 29 205-237 7-36 (146)
243 PF02183 HALZ: Homeobox associ 31.7 1.4E+02 0.0031 20.9 4.8 8 164-171 29-36 (45)
244 PF14916 CCDC92: Coiled-coil d 31.4 84 0.0018 23.6 3.9 17 139-155 22-38 (60)
245 COG1842 PspA Phage shock prote 31.3 1.5E+02 0.0032 27.5 6.3 46 139-186 100-145 (225)
246 KOG4572|consensus 31.2 81 0.0017 35.1 5.1 29 75-103 992-1020(1424)
247 PF08172 CASP_C: CASP C termin 31.2 1.3E+02 0.0027 28.3 5.9 19 139-157 115-133 (248)
248 PF14662 CCDC155: Coiled-coil 30.9 4.2E+02 0.0092 24.3 9.9 14 52-65 64-77 (193)
249 PF13166 AAA_13: AAA domain 30.7 6.4E+02 0.014 26.3 15.4 17 199-215 474-492 (712)
250 PRK15178 Vi polysaccharide exp 30.5 3.7E+02 0.0081 27.5 9.5 49 136-184 284-337 (434)
251 KOG0161|consensus 30.4 4.5E+02 0.0097 32.0 11.2 26 170-195 1173-1198(1930)
252 PF04977 DivIC: Septum formati 30.4 1.7E+02 0.0037 21.3 5.5 14 188-201 53-67 (80)
253 KOG0243|consensus 30.0 6.1E+02 0.013 28.9 11.6 21 139-159 449-469 (1041)
254 PF09006 Surfac_D-trimer: Lung 29.7 1.1E+02 0.0025 21.8 4.1 24 163-186 1-24 (46)
255 KOG4807|consensus 29.6 3.2E+02 0.0069 28.1 8.6 27 75-101 295-321 (593)
256 PF05008 V-SNARE: Vesicle tran 29.6 2.4E+02 0.0051 20.9 8.3 57 74-155 21-78 (79)
257 PF10267 Tmemb_cc2: Predicted 29.3 6.1E+02 0.013 25.6 11.1 36 161-196 276-311 (395)
258 PRK13922 rod shape-determining 29.3 1.3E+02 0.0027 27.9 5.6 17 139-155 94-110 (276)
259 PF09755 DUF2046: Uncharacteri 29.1 4.9E+02 0.011 25.5 9.6 22 139-160 230-251 (310)
260 PF10146 zf-C4H2: Zinc finger- 29.1 4.7E+02 0.01 24.3 13.9 84 73-186 3-92 (230)
261 TIGR00237 xseA exodeoxyribonuc 29.0 6E+02 0.013 25.5 17.2 35 200-235 395-430 (432)
262 PF14282 FlxA: FlxA-like prote 28.9 2.2E+02 0.0049 23.0 6.3 48 139-186 20-76 (106)
263 KOG4809|consensus 28.8 2.4E+02 0.0052 30.0 7.9 28 75-102 377-404 (654)
264 TIGR03007 pepcterm_ChnLen poly 28.7 6E+02 0.013 25.3 13.0 24 71-94 247-270 (498)
265 KOG0999|consensus 28.6 6E+02 0.013 27.4 10.6 113 73-190 102-233 (772)
266 PRK13169 DNA replication intia 28.5 3.1E+02 0.0068 22.8 7.2 52 76-159 6-57 (110)
267 PF09755 DUF2046: Uncharacteri 28.3 5.8E+02 0.013 25.0 11.0 22 135-156 181-203 (310)
268 PF14197 Cep57_CLD_2: Centroso 28.1 2.7E+02 0.0059 21.1 9.2 38 139-178 27-64 (69)
269 cd00632 Prefoldin_beta Prefold 28.0 3.1E+02 0.0067 21.8 7.9 16 139-154 71-86 (105)
270 PF11559 ADIP: Afadin- and alp 28.0 3.6E+02 0.0079 22.6 10.1 47 139-185 67-118 (151)
271 PHA03162 hypothetical protein; 27.9 57 0.0012 28.2 2.7 23 135-157 16-39 (135)
272 COG0248 GppA Exopolyphosphatas 27.8 61 0.0013 33.4 3.5 48 187-235 89-143 (492)
273 PF03954 Lectin_N: Hepatic lec 27.6 1E+02 0.0022 26.8 4.2 59 27-95 53-111 (138)
274 TIGR00998 8a0101 efflux pump m 27.4 4.4E+02 0.0096 24.4 8.9 22 163-184 117-138 (334)
275 PF12777 MT: Microtubule-bindi 27.4 2.9E+02 0.0064 26.6 7.9 62 139-200 236-312 (344)
276 PRK11031 guanosine pentaphosph 27.4 35 0.00076 34.7 1.7 47 188-235 93-146 (496)
277 PF15254 CCDC14: Coiled-coil d 27.3 9E+02 0.019 26.9 13.7 75 79-158 388-468 (861)
278 KOG1937|consensus 27.3 7.3E+02 0.016 25.9 11.7 127 73-200 384-516 (521)
279 PF05701 WEMBL: Weak chloropla 26.9 3.5E+02 0.0076 27.8 8.8 18 139-156 338-355 (522)
280 PF03980 Nnf1: Nnf1 ; InterPr 26.9 1.8E+02 0.0039 23.2 5.4 20 76-95 32-51 (109)
281 PRK04778 septation ring format 26.8 7.3E+02 0.016 25.7 14.7 18 139-156 356-373 (569)
282 PF04350 PilO: Pilus assembly 26.7 1.2E+02 0.0027 24.6 4.6 54 139-198 7-62 (144)
283 PF12795 MscS_porin: Mechanose 26.7 4.8E+02 0.011 23.6 10.7 135 52-186 56-210 (240)
284 PF01486 K-box: K-box region; 26.7 3.2E+02 0.0069 21.5 10.7 87 73-183 7-97 (100)
285 PF04012 PspA_IM30: PspA/IM30 26.6 1.8E+02 0.0039 25.9 5.9 23 74-96 26-48 (221)
286 PRK10361 DNA recombination pro 26.4 4.3E+02 0.0093 27.4 9.2 44 139-182 141-186 (475)
287 PF10805 DUF2730: Protein of u 26.4 3.5E+02 0.0076 21.9 7.2 26 77-102 34-59 (106)
288 KOG1962|consensus 26.3 2.2E+02 0.0047 26.5 6.4 46 139-186 159-204 (216)
289 PF10828 DUF2570: Protein of u 26.1 3.6E+02 0.0077 21.9 9.6 59 136-194 23-86 (110)
290 PF10186 Atg14: UV radiation r 25.6 5E+02 0.011 23.4 12.8 12 242-253 205-216 (302)
291 KOG0249|consensus 25.5 2.7E+02 0.0058 30.7 7.6 29 132-160 163-192 (916)
292 CHL00132 psaF photosystem I su 25.4 1.6E+02 0.0034 26.8 5.2 49 128-182 33-82 (185)
293 KOG4001|consensus 25.3 5.5E+02 0.012 24.1 8.8 22 135-156 231-253 (259)
294 PF04420 CHD5: CHD5-like prote 25.2 1.4E+02 0.003 25.9 4.8 45 52-96 44-91 (161)
295 PF14335 DUF4391: Domain of un 24.9 1.9E+02 0.0041 26.1 5.8 42 134-175 178-219 (221)
296 PF10226 DUF2216: Uncharacteri 24.8 5.5E+02 0.012 23.6 9.6 60 139-198 63-141 (195)
297 PF07798 DUF1640: Protein of u 24.6 4.7E+02 0.01 22.8 9.2 63 136-198 71-136 (177)
298 TIGR03752 conj_TIGR03752 integ 24.5 5.1E+02 0.011 26.9 9.3 15 142-156 84-98 (472)
299 KOG4643|consensus 24.5 1E+03 0.022 27.5 11.8 18 139-156 323-340 (1195)
300 COG3074 Uncharacterized protei 24.3 3.1E+02 0.0067 21.5 5.9 48 44-100 13-61 (79)
301 PLN02939 transferase, transfer 24.3 5.9E+02 0.013 28.8 10.3 46 52-97 167-213 (977)
302 PRK10361 DNA recombination pro 24.2 8.2E+02 0.018 25.4 12.4 23 177-199 138-160 (475)
303 PRK10476 multidrug resistance 24.2 5.1E+02 0.011 24.5 8.8 48 139-186 94-146 (346)
304 PF10147 CR6_interact: Growth 24.1 2.8E+02 0.0061 25.8 6.8 16 195-210 165-180 (217)
305 TIGR03142 cytochro_ccmI cytoch 24.1 1.1E+02 0.0025 24.9 3.8 18 85-102 36-53 (117)
306 PF06667 PspB: Phage shock pro 24.1 96 0.0021 24.2 3.2 15 75-89 53-67 (75)
307 PF15058 Speriolin_N: Sperioli 23.8 1.2E+02 0.0025 28.0 4.1 24 139-162 13-36 (200)
308 PF05911 DUF869: Plant protein 23.8 1E+03 0.022 26.3 12.4 60 139-198 142-226 (769)
309 PF14915 CCDC144C: CCDC144C pr 23.6 2.8E+02 0.0062 27.1 6.9 115 39-178 63-203 (305)
310 KOG0964|consensus 23.4 4.2E+02 0.0092 30.2 8.8 17 52-68 304-320 (1200)
311 TIGR00020 prfB peptide chain r 23.3 7.5E+02 0.016 24.6 11.4 11 196-206 154-164 (364)
312 PF04156 IncA: IncA protein; 23.1 4.9E+02 0.011 22.4 12.8 29 73-101 83-111 (191)
313 PF08826 DMPK_coil: DMPK coile 23.1 3.3E+02 0.0071 20.4 7.5 40 139-180 19-58 (61)
314 PF05494 Tol_Tol_Ttg2: Toluene 23.0 4.7E+02 0.01 22.2 9.2 88 178-266 61-167 (170)
315 smart00338 BRLZ basic region l 23.0 3E+02 0.0064 19.9 7.3 32 136-169 30-62 (65)
316 cd07667 BAR_SNX30 The Bin/Amph 23.0 6.4E+02 0.014 23.7 9.9 59 139-199 161-220 (240)
317 PRK14127 cell division protein 22.9 1.9E+02 0.004 24.1 4.8 44 42-87 47-101 (109)
318 PF03961 DUF342: Protein of un 22.9 4.1E+02 0.0088 26.6 8.2 73 76-173 332-408 (451)
319 PF12711 Kinesin-relat_1: Kine 22.8 4E+02 0.0087 21.3 7.3 45 139-186 25-69 (86)
320 TIGR02680 conserved hypothetic 22.7 9.1E+02 0.02 28.1 11.7 27 76-102 740-766 (1353)
321 PRK03598 putative efflux pump 22.6 3.6E+02 0.0078 25.3 7.4 71 112-185 61-138 (331)
322 PF06810 Phage_GP20: Phage min 22.6 4.6E+02 0.01 22.7 7.5 52 140-191 29-81 (155)
323 KOG4673|consensus 22.6 6.9E+02 0.015 27.6 9.9 28 74-101 412-439 (961)
324 TIGR01005 eps_transp_fam exopo 22.5 9.4E+02 0.02 25.5 16.3 19 78-96 288-306 (754)
325 TIGR01255 pyr_form_ly_1 format 22.5 1.8E+02 0.0038 31.8 5.8 67 139-206 178-252 (744)
326 PF13870 DUF4201: Domain of un 21.9 5.2E+02 0.011 22.3 8.2 14 141-154 45-58 (177)
327 PF07439 DUF1515: Protein of u 21.9 4.2E+02 0.0092 22.3 6.7 44 139-182 9-61 (112)
328 PF10234 Cluap1: Clusterin-ass 21.7 7.1E+02 0.015 23.8 11.5 53 139-196 198-250 (267)
329 PF05531 NPV_P10: Nucleopolyhe 21.7 4E+02 0.0086 20.9 6.6 53 41-101 13-65 (75)
330 PF11559 ADIP: Afadin- and alp 21.6 4.8E+02 0.01 21.8 13.0 40 139-183 109-148 (151)
331 PF11336 DUF3138: Protein of u 21.5 2.4E+02 0.0053 29.1 6.2 48 139-186 33-108 (514)
332 KOG4001|consensus 21.4 4.4E+02 0.0095 24.8 7.4 53 139-191 177-236 (259)
333 PF05812 Herpes_BLRF2: Herpesv 21.4 1.2E+02 0.0026 25.7 3.4 21 139-159 11-31 (118)
334 PF12808 Mto2_bdg: Micro-tubul 21.3 1.7E+02 0.0036 21.4 3.7 19 139-157 30-48 (52)
335 PF04799 Fzo_mitofusin: fzo-li 21.0 4E+02 0.0087 23.9 6.9 46 139-184 121-167 (171)
336 PF14182 YgaB: YgaB-like prote 21.0 4.3E+02 0.0093 21.0 7.7 55 140-194 16-73 (79)
337 KOG2264|consensus 21.0 55 0.0012 34.9 1.7 28 73-100 109-136 (907)
338 PF04728 LPP: Lipoprotein leuc 20.9 3.6E+02 0.0078 20.0 6.7 40 139-178 4-48 (56)
339 PF10146 zf-C4H2: Zinc finger- 20.9 6E+02 0.013 23.6 8.3 9 41-49 3-11 (230)
340 PRK13729 conjugal transfer pil 20.8 2.2E+02 0.0048 29.5 5.8 63 35-101 65-127 (475)
341 PRK05431 seryl-tRNA synthetase 20.8 5.8E+02 0.013 25.6 8.8 60 139-198 43-103 (425)
342 PF05529 Bap31: B-cell recepto 20.5 5.7E+02 0.012 22.3 8.7 36 139-176 155-190 (192)
343 PF01920 Prefoldin_2: Prefoldi 20.4 4E+02 0.0086 20.4 9.7 24 132-155 62-86 (106)
344 PRK09841 cryptic autophosphory 20.3 1.1E+03 0.023 25.3 15.8 23 21-43 229-251 (726)
345 PRK09458 pspB phage shock prot 20.2 38 0.00083 26.5 0.3 15 75-89 53-67 (75)
346 cd07590 BAR_Bin3 The Bin/Amphi 20.1 5.9E+02 0.013 23.5 8.1 68 139-206 116-183 (225)
347 PRK10803 tol-pal system protei 20.1 3.2E+02 0.007 25.5 6.4 28 139-168 62-89 (263)
No 1
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=100.00 E-value=2.6e-52 Score=428.34 Aligned_cols=216 Identities=32% Similarity=0.505 Sum_probs=168.8
Q ss_pred hHHHHHHHhhcccccccC-----CCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccceeeeee
Q psy9275 52 TYQMEWRALKGNATFSES-----AAPPGSDRAKLEVLEKVIEGYRQRMEHIEADQGLVCVIPGQNSEKVAQQKVQELQME 126 (284)
Q Consensus 52 ~~e~e~~~lk~~~~~~e~-----~~~~~~l~~ki~eLE~~l~~~R~~~~~~~~~l~~~~lE~~~~~g~~~~~~tkvlIL~ 126 (284)
+++.+++.++......+. ++..+.++.+|..||..++.+++++..++..++ ..+++|+|+|++|+|+ |
T Consensus 479 ~~~~e~~~~~~~~~~~~~~~~~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~-----~~~L~g~~~~~~trVL--~ 551 (722)
T PF05557_consen 479 TLEAELKSLKEQLSSNDRSLSSLSEELNELQKEIEELERENERLRQELEELESELE-----KLTLQGEFNPSKTRVL--H 551 (722)
T ss_dssp ---------------HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHCCCT--BTTTEEEE--E
T ss_pred chhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhhhccccCCCCceee--e
Confidence 455555555555444333 134456888999999999999999999888774 5667899999999765 9
Q ss_pred cccCHHH--HH-HHHHHHHHHHHHHHHHHHHhhhhhH-----------------HHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy9275 127 ADNNRET--VK-QMAGMQKLNSKIKSLELQGKRLREV-----------------YKAAKLNNKIKSLELQGKRLREVYKA 186 (284)
Q Consensus 127 lr~NP~a--~~-~~~~le~Lk~ENe~L~~~l~~~e~~-----------------~E~~~Lk~qi~~~eKr~~RLKEVF~~ 186 (284)
|++||.+ .+ +.+++++|++||++|+++++.++.+ .++.+|+++|++++||++||||||++
T Consensus 552 lr~NP~~~~~~~k~~~l~~L~~En~~L~~~l~~le~~~~~~~~~~p~~~~~~~~~e~~~l~~~~~~~ekr~~RLkevf~~ 631 (722)
T PF05557_consen 552 LRDNPTSKAEQIKKSTLEALQAENEDLLARLRSLEEGNSQPVDAVPTSSLESQEKEIAELKAELASAEKRNQRLKEVFKA 631 (722)
T ss_dssp ESS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT----------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999933 33 4459999999999999999777654 57899999999999999999999999
Q ss_pred HHHHHHHHHHHhhceEEEee-CCeeEEEeeccCCCCCceEEEecCCe--eeeeCCcchhhhHHHHHHHhhhCCCchhhhH
Q psy9275 187 ASQEFRETVYLLFGYKVDRT-NCMYKLASMYADGPDENLLFQSTEGQ--LNLIETDYSKVLKPLLDLHLGRHHSIPMLLS 263 (284)
Q Consensus 187 Ks~EFReav~~LlGYkIdf~-ng~~rL~S~Ya~s~ed~LvF~~~~G~--mkll~s~f~~~l~~~i~~wl~~~~SIPaFLA 263 (284)
||.+||+|||+||||+|||. ||+|||+|||+++|+|||+|++++|+ |++++++|+++|+++|.+||.+++|||||||
T Consensus 632 ks~eFr~av~~llGyki~~~~~~~~rl~S~ya~~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~~siP~FLa 711 (722)
T PF05557_consen 632 KSQEFREAVYSLLGYKIDFMPNGRVRLTSMYAESPDDYLIFDLESGTGSMKLLESEFSPELEDLIEFWVEERNSIPAFLA 711 (722)
T ss_dssp HHHHHHHHHHHHHSEEEEEETTTEEEEEETT-SSTT--EEEEEE-----EEEE--CCHHCTHHHHHHHTTTS--HHHHHH
T ss_pred HHHHHHHHHHHHhcceeeecCCCeEEEEecccCCCCCeEEEeecCCCccceeCCCchHHHHHHHHHHHHHcCCChhHHHH
Confidence 99999999999999999999 99999999999999999999999776 9999999999999999999999999999999
Q ss_pred HhcHHhhhccc
Q psy9275 264 ALTQELFQRQT 274 (284)
Q Consensus 264 ALTLeLfek~T 274 (284)
||||+||+++|
T Consensus 712 alTlel~~~~t 722 (722)
T PF05557_consen 712 ALTLELFEKQT 722 (722)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHhcCC
Confidence 99999999987
No 2
>KOG4593|consensus
Probab=100.00 E-value=1.4e-43 Score=356.83 Aligned_cols=227 Identities=27% Similarity=0.424 Sum_probs=190.8
Q ss_pred HHHHHhhhhhhhHHHHHHHhhcccccccCC-----CCCcchHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccc
Q psy9275 41 EKELKEKVDHLTYQMEWRALKGNATFSESA-----APPGSDRAKLEVLEKVIEGYRQRMEHIEADQGLVCVIPGQNSEKV 115 (284)
Q Consensus 41 ~~~~~~~~~~~~~e~e~~~lk~~~~~~e~~-----~~~~~l~~ki~eLE~~l~~~R~~~~~~~~~l~~~~lE~~~~~g~~ 115 (284)
+..++..++ .++++++.|+++.+..+++ .+...+..+|....+.+..++.+.-.+. +++|+.-++|+|
T Consensus 463 i~~~k~~~e--~le~~~kdL~s~L~~~~q~l~~qr~e~~~~~e~i~~~~ke~~~Le~En~rLr-----~~~e~~~l~gd~ 535 (716)
T KOG4593|consen 463 ITGQKKRLE--KLEHELKDLQSQLSSREQSLLFQREESELLREKIEQYLKELELLEEENDRLR-----AQLERRLLQGDY 535 (716)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhhhh
Confidence 445555555 8899999999998877765 3333445555555544444444443333 223445559999
Q ss_pred ccccceeeeeecccCHH--HHHHHH-HHHHHHHHHHHHHHHHhhhhhH------------------HHHHHHHHHHHhHH
Q psy9275 116 AQQKVQELQMEADNNRE--TVKQMA-GMQKLNSKIKSLELQGKRLREV------------------YKAAKLNNKIKSLE 174 (284)
Q Consensus 116 ~~~~tkvlIL~lr~NP~--a~~~~~-~le~Lk~ENe~L~~~l~~~e~~------------------~E~~~Lk~qi~~~e 174 (284)
+...++|+ |+++||- +++..+ +++.|++||++|+.++.+++.+ .|+++|++++++++
T Consensus 536 ~~~~~rVl--~~~~npt~~~~~~~k~~~e~LqaE~~~lk~~l~~le~~~~~~~d~~i~~~s~~~~~~ev~qlk~ev~s~e 613 (716)
T KOG4593|consen 536 EENITRVL--HMSTNPTSKARQIKKNRLEELQAELERLKERLTALEGDKMQFRDGEIAVHSLLAFSKEVAQLKKEVESAE 613 (716)
T ss_pred hhhcccee--eecCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhHHhhhhcchHHHHHHHHHHHHHH
Confidence 99999775 9999994 444333 9999999999999999998875 58999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhceEEEee-CCeeEEEeeccCCCCCceEEEecCCeeeeeCCcchhhhHHHHHHHhh
Q psy9275 175 LQGKRLREVYKAASQEFRETVYLLFGYKVDRT-NCMYKLASMYADGPDENLLFQSTEGQLNLIETDYSKVLKPLLDLHLG 253 (284)
Q Consensus 175 Kr~~RLKEVF~~Ks~EFReav~~LlGYkIdf~-ng~~rL~S~Ya~s~ed~LvF~~~~G~mkll~s~f~~~l~~~i~~wl~ 253 (284)
||++|||+||+.+|++||+|||+||||+|||+ +++|||+|+||++|+||++|..++|+|++++++|+..|+++|+.||.
T Consensus 614 kr~~rlk~vF~~ki~eFr~ac~sL~Gykid~~~~s~~ritS~ya~~~~~~~~~e~eS~s~~ll~n~~~~~~d~li~~~~~ 693 (716)
T KOG4593|consen 614 KRNQRLKEVFASKIQEFRDACYSLLGYKIDFTLESRYRLTSGYAEEPDDCDIFENESGSLQLLENPYSHTFDPLIQVWCF 693 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccceeeeeeccCCCchhhhhcCccchhHhhcCCcccccchHhhhhhh
Confidence 99999999999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred hCCCchhhhHHhcHHhhhccccc
Q psy9275 254 RHHSIPMLLSALTQELFQRQTMS 276 (284)
Q Consensus 254 ~~~SIPaFLAALTLeLfek~T~~ 276 (284)
.++|||||||||||+||++.|.+
T Consensus 694 ~~~siPaFlaaLTLELf~k~tv~ 716 (716)
T KOG4593|consen 694 ARSSIPAFLAALTLELFQKRTVT 716 (716)
T ss_pred cccCchHHHHHHHHHHHhhccCC
Confidence 99999999999999999999863
No 3
>KOG4593|consensus
Probab=97.43 E-value=6.8e-05 Score=77.80 Aligned_cols=127 Identities=17% Similarity=0.067 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhh--hH-----------------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9275 138 AGMQKLNSKIKSLELQGKRLR--EV-----------------YKAAKLNNKIKSLELQGKRLREVYKAASQEFRETVYLL 198 (284)
Q Consensus 138 ~~le~Lk~ENe~L~~~l~~~e--~~-----------------~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFReav~~L 198 (284)
..++.|+.||.+|+..+..-. .+ .--...+..+..+++-+.|||+. +..+
T Consensus 510 ke~~~Le~En~rLr~~~e~~~l~gd~~~~~~rVl~~~~npt~~~~~~~k~~~e~LqaE~~~lk~~-----------l~~l 578 (716)
T KOG4593|consen 510 KELELLEEENDRLRAQLERRLLQGDYEENITRVLHMSTNPTSKARQIKKNRLEELQAELERLKER-----------LTAL 578 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhccceeeecCCchHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHH
Confidence 378999999999996654321 11 11234455788888888888887 5668
Q ss_pred hceEEEeeCCeeEEEeeccCCCCCceEEEecCCeeeeeCCcchhhhHHHHHHHhhhCCCchhhhHHhcHHhhhccccc
Q psy9275 199 FGYKVDRTNCMYKLASMYADGPDENLLFQSTEGQLNLIETDYSKVLKPLLDLHLGRHHSIPMLLSALTQELFQRQTMS 276 (284)
Q Consensus 199 lGYkIdf~ng~~rL~S~Ya~s~ed~LvF~~~~G~mkll~s~f~~~l~~~i~~wl~~~~SIPaFLAALTLeLfek~T~~ 276 (284)
-||+..|.++..-+.|+|+.+ .+...|+...++++.....|...|..-|..|...+.|+|||...+|.+.+.+-|.+
T Consensus 579 e~~~~~~~d~~i~~~s~~~~~-~ev~qlk~ev~s~ekr~~rlk~vF~~ki~eFr~ac~sL~Gykid~~~~s~~ritS~ 655 (716)
T KOG4593|consen 579 EGDKMQFRDGEIAVHSLLAFS-KEVAQLKKEVESAEKRNQRLKEVFASKIQEFRDACYSLLGYKIDFTLESRYRLTSG 655 (716)
T ss_pred hccCCcccchhhHHhhhhcch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccceeeeee
Confidence 899998889999999999974 35566677778888888888899999999999999999999999999988777665
No 4
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=94.39 E-value=0.35 Score=41.90 Aligned_cols=94 Identities=17% Similarity=0.229 Sum_probs=65.3
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccceeeeeecccCHHHHHHHHHHHHHHHHHHHH
Q psy9275 71 APPGSDRAKLEVLEKVIEGYRQRMEHIEADQGLVCVIPGQNSEKVAQQKVQELQMEADNNRETVKQMAGMQKLNSKIKSL 150 (284)
Q Consensus 71 ~~~~~l~~ki~eLE~~l~~~R~~~~~~~~~l~~~~lE~~~~~g~~~~~~tkvlIL~lr~NP~a~~~~~~le~Lk~ENe~L 150 (284)
++...+...|.+|...+..++..+..+..+|. .|..-|-..+-...+..|+.||+.|
T Consensus 72 eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~-----------------------~L~~~~t~~el~~~i~~l~~e~~~l 128 (169)
T PF07106_consen 72 EELAELDAEIKELREELAELKKEVKSLEAELA-----------------------SLSSEPTNEELREEIEELEEEIEEL 128 (169)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 44556788889999888888888888888884 4566662223223688899999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy9275 151 ELQGKRLREVYKAAKLNNKIKSLELQGKRLREVYKAAS 188 (284)
Q Consensus 151 ~~~l~~~e~~~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks 188 (284)
..+|..+..+... --..++..+++...++...|.+.-
T Consensus 129 ~~kL~~l~~~~~~-vs~ee~~~~~~~~~~~~k~w~kRK 165 (169)
T PF07106_consen 129 EEKLEKLRSGSKP-VSPEEKEKLEKEYKKWRKEWKKRK 165 (169)
T ss_pred HHHHHHHHhCCCC-CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988765111 113455666677777777776643
No 5
>PRK09039 hypothetical protein; Validated
Probab=93.70 E-value=1.3 Score=42.94 Aligned_cols=42 Identities=21% Similarity=0.165 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhH-----HHHHHHHHHHHhHHHHHHHH
Q psy9275 139 GMQKLNSKIKSLELQGKRLREV-----YKAAKLNNKIKSLELQGKRL 180 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~-----~E~~~Lk~qi~~~eKr~~RL 180 (284)
++..|+.+++.|+.++..++.. ....+.+.+|++++.+.+..
T Consensus 138 ~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 138 QVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888888888887777643 22344444555555444444
No 6
>KOG0995|consensus
Probab=92.94 E-value=1.7 Score=45.16 Aligned_cols=62 Identities=19% Similarity=0.267 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhH--------HHHHHHHHHHHhHHHHHHHH-HHHHHHHH--HHHHHHHHHhh
Q psy9275 138 AGMQKLNSKIKSLELQGKRLREV--------YKAAKLNNKIKSLELQGKRL-REVYKAAS--QEFRETVYLLF 199 (284)
Q Consensus 138 ~~le~Lk~ENe~L~~~l~~~e~~--------~E~~~Lk~qi~~~eKr~~RL-KEVF~~Ks--~EFReav~~Ll 199 (284)
++++.|+++|.+|+.++....-. .|..+|+..|...+....+| |+||..+. +.|-+.+-..|
T Consensus 308 eE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~ 380 (581)
T KOG0995|consen 308 EEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKF 380 (581)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 48999999999999998875432 66777788888888888887 46676655 66666665544
No 7
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=92.61 E-value=1.2 Score=37.51 Aligned_cols=30 Identities=17% Similarity=0.263 Sum_probs=23.6
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9275 71 APPGSDRAKLEVLEKVIEGYRQRMEHIEAD 100 (284)
Q Consensus 71 ~~~~~l~~ki~eLE~~l~~~R~~~~~~~~~ 100 (284)
..+..+...|..+|.+++.++++++.+.+.
T Consensus 16 ~~ve~L~s~lr~~E~E~~~l~~el~~l~~~ 45 (120)
T PF12325_consen 16 QLVERLQSQLRRLEGELASLQEELARLEAE 45 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345568889999999999999888886654
No 8
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=92.41 E-value=1.9 Score=41.28 Aligned_cols=74 Identities=14% Similarity=0.198 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhH-----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHhhceEEEee-CCe
Q psy9275 139 GMQKLNSKIKSLELQGKRLREV-----YKAAKLNNKIKSLELQGKRLREVYKAASQEFR---ETVYLLFGYKVDRT-NCM 209 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~-----~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFR---eav~~LlGYkIdf~-ng~ 209 (284)
+++..+++.+.|..++..+... .++.+++.+|.++++....-+.+=..-+...+ ++...++||+|.-. ++.
T Consensus 224 ~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~~~gw~~~~~~~~~ 303 (325)
T PF08317_consen 224 EIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDALEKLTGWKIVSISGST 303 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHCcEEEEEeCCe
Confidence 3444444444444444443332 45667777777777665432222111222222 34677899999887 555
Q ss_pred eEE
Q psy9275 210 YKL 212 (284)
Q Consensus 210 ~rL 212 (284)
+.+
T Consensus 304 l~~ 306 (325)
T PF08317_consen 304 LEF 306 (325)
T ss_pred EEE
Confidence 544
No 9
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=92.17 E-value=7 Score=36.62 Aligned_cols=95 Identities=19% Similarity=0.199 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhH---------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh-ceEEEee-C
Q psy9275 139 GMQKLNSKIKSLELQGKRLREV---------YKAAKLNNKIKSLELQGKRLREVYKAASQEFRETVYLLF-GYKVDRT-N 207 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~---------~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFReav~~Ll-GYkIdf~-n 207 (284)
.++.|+.+...|..++.+.+.. .++.....+......+...|++--......|-+.+..=. |-=|--. +
T Consensus 118 ~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~~l~~ell~~yeri~~~~kg~gvvpl~g 197 (239)
T COG1579 118 EIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKEKLDPELLSEYERIRKNKKGVGVVPLEG 197 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCceEEeecC
Confidence 4455555555555555555543 345666666777777778888888777777777777666 6656555 1
Q ss_pred ----C-eeEEEeeccCC--CCCceEEEecCCee
Q psy9275 208 ----C-MYKLASMYADG--PDENLLFQSTEGQL 233 (284)
Q Consensus 208 ----g-~~rL~S~Ya~s--~ed~LvF~~~~G~m 233 (284)
| .++|.+.+... ..|.++|=|..|.+
T Consensus 198 ~~C~GC~m~l~~~~~~~V~~~d~iv~CP~CgRI 230 (239)
T COG1579 198 RVCGGCHMKLPSQTLSKVRKKDEIVFCPYCGRI 230 (239)
T ss_pred CcccCCeeeecHHHHHHHhcCCCCccCCccchH
Confidence 1 55666555421 14556666665543
No 10
>KOG4657|consensus
Probab=91.89 E-value=11 Score=35.31 Aligned_cols=122 Identities=10% Similarity=0.164 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHH-----HHHHHHHHHHHHHHHHH---HHHHHHhhceEEEee-CC-
Q psy9275 139 GMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLE-----LQGKRLREVYKAASQEF---RETVYLLFGYKVDRT-NC- 208 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi~~~e-----Kr~~RLKEVF~~Ks~EF---Reav~~LlGYkIdf~-ng- 208 (284)
++..+|+|.+.|+..++.++. |+...+.-|.+.. +.-.+.|- .+++... ..-....||+.|.-. +.
T Consensus 94 eik~~q~elEvl~~n~Q~lke--E~dd~keiIs~kr~~~~Ka~e~~~kR--kQdsa~~~e~a~wy~dyLGleie~~hgev 169 (246)
T KOG4657|consen 94 EIKATQSELEVLRRNLQLLKE--EKDDSKEIISQKRQALSKAKENAGKR--KQDSADIHEAASWYNDYLGLEIEAGHGEV 169 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHH--HhhhhccHHHHHHHHHhcCceeeeccCce
Confidence 566666666666666555542 2233333222222 12222222 2222222 223445699999998 43
Q ss_pred -eeEEEeeccCCCCCceEEEec-CC--eeeeeC-CcchhhhHHHHHHHhhhCCCchhhhHHh
Q psy9275 209 -MYKLASMYADGPDENLLFQST-EG--QLNLIE-TDYSKVLKPLLDLHLGRHHSIPMLLSAL 265 (284)
Q Consensus 209 -~~rL~S~Ya~s~ed~LvF~~~-~G--~mkll~-s~f~~~l~~~i~~wl~~~~SIPaFLAAL 265 (284)
+|..|-+=+.+|..+|.|.+. +. --+++. .|-..-+.+.+.. +...+++-.||..+
T Consensus 170 ikfiFTnIdpkdp~~~FsF~vhL~e~~Dy~Vvd~~P~L~gl~~a~s~-vr~tnnFs~FL~n~ 230 (246)
T KOG4657|consen 170 IKFIFTNIDPKDPTREFSFTVHLGEDIDYQVVDHSPQLQGLTSAISA-VRPTNNFSSFLENK 230 (246)
T ss_pred EEEEEeccCCCCCccceeeEEeeccccCccccCcCCCcccHHHHHHH-hhccccHHHHHHHH
Confidence 888899999999999999987 22 234443 2222334444443 56778888888764
No 11
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=91.78 E-value=0.77 Score=47.53 Aligned_cols=101 Identities=20% Similarity=0.214 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccceeeeeecc--cCH-HHHHHHHHHHHHHHHHHHHHHH
Q psy9275 77 RAKLEVLEKVIEGYRQRMEHIEADQGLVCVIPGQNSEKVAQQKVQELQMEAD--NNR-ETVKQMAGMQKLNSKIKSLELQ 153 (284)
Q Consensus 77 ~~ki~eLE~~l~~~R~~~~~~~~~l~~~~lE~~~~~g~~~~~~tkvlIL~lr--~NP-~a~~~~~~le~Lk~ENe~L~~~ 153 (284)
.+.+++++..+...++......++|. .+.++..-+.+|-.|.-. .|| +..+..++++.|+.|.+..+++
T Consensus 163 ~~~~~~~~~~~k~~~~~w~~~~~~Lp--------~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~ 234 (555)
T TIGR03545 163 VETAEEIEKSLKAMQQKWKKRKKDLP--------NKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQK 234 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC--------CchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788888888888888877766662 134444444443333334 689 4455556899999999999999
Q ss_pred HhhhhhH--HHHHHHHHHHHhHHH----HHHHHHHHHH
Q psy9275 154 GKRLREV--YKAAKLNNKIKSLEL----QGKRLREVYK 185 (284)
Q Consensus 154 l~~~e~~--~E~~~Lk~qi~~~eK----r~~RLKEVF~ 185 (284)
++..... .+..+++.+++.+++ -..||++.|.
T Consensus 235 i~~~~~~l~~~~~~~~~~~~~lk~ap~~D~~~L~~~~~ 272 (555)
T TIGR03545 235 IKSAKNDLQNDKKQLKADLAELKKAPQNDLKRLENKYA 272 (555)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhccHhHHHHHHHHhC
Confidence 8887654 455666666655543 4668885544
No 12
>PRK10884 SH3 domain-containing protein; Provisional
Probab=91.45 E-value=0.73 Score=41.98 Aligned_cols=77 Identities=18% Similarity=0.220 Sum_probs=47.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccceeeeeecccCHHHHHHHH-HHHHHHHHHHHHHHH
Q psy9275 75 SDRAKLEVLEKVIEGYRQRMEHIEADQGLVCVIPGQNSEKVAQQKVQELQMEADNNRETVKQMA-GMQKLNSKIKSLELQ 153 (284)
Q Consensus 75 ~l~~ki~eLE~~l~~~R~~~~~~~~~l~~~~lE~~~~~g~~~~~~tkvlIL~lr~NP~a~~~~~-~le~Lk~ENe~L~~~ 153 (284)
..+.++++||..++..+++++.+..+.. +.+.. + -.-.++.. .+..|++||++|.++
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~~~~~~~--------------~~~~~-----l---~~~~~~~~~~~~~L~~~n~~L~~~ 147 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNNIDNTWN--------------QRTAE-----M---QQKVAQSDSVINGLKEENQKLKNQ 147 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHHH--------------HHHHH-----H---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999988888665542 11000 0 00011122 566688888888766
Q ss_pred HhhhhhHHHHHHHHHHHHhHHHHHHHHHH
Q psy9275 154 GKRLREVYKAAKLNNKIKSLELQGKRLRE 182 (284)
Q Consensus 154 l~~~e~~~E~~~Lk~qi~~~eKr~~RLKE 182 (284)
+. .++.++..++..+++++.
T Consensus 148 l~---------~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 148 LI---------VAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HH---------HHHHHHHHHHHHHHHHHH
Confidence 54 455666666666666653
No 13
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.10 E-value=2.2 Score=48.12 Aligned_cols=63 Identities=11% Similarity=0.059 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhH------------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhce
Q psy9275 139 GMQKLNSKIKSLELQGKRLREV------------YKAAKLNNKIKSLELQGKRLREVYKAASQEFRETVYLLFGY 201 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~------------~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFReav~~LlGY 201 (284)
.++.|..+++.+...+...... .+..+++.+....+.+.+.-..-|+.....+...+..+-+|
T Consensus 889 ~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~y 963 (1311)
T TIGR00606 889 QLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENK 963 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777777766665432 12222333333333333333344444445555555555444
No 14
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=89.80 E-value=16 Score=33.55 Aligned_cols=62 Identities=16% Similarity=0.370 Sum_probs=41.6
Q ss_pred hceEEEee------CCeeE--------EEeeccCCCCC--ceEEEecCCeeeeeCCcchhhhHHHHHHHhhhCCCchhhh
Q psy9275 199 FGYKVDRT------NCMYK--------LASMYADGPDE--NLLFQSTEGQLNLIETDYSKVLKPLLDLHLGRHHSIPMLL 262 (284)
Q Consensus 199 lGYkIdf~------ng~~r--------L~S~Ya~s~ed--~LvF~~~~G~mkll~s~f~~~l~~~i~~wl~~~~SIPaFL 262 (284)
+|++|+.. +|.-+ -.+.|+.++|. +-+|++..|.-..++.+|...+...+... ++...|.|+
T Consensus 164 yg~~i~~~~~~i~~dG~~~~V~~LrlGr~~l~~~t~Dg~~~g~~~~~~~~W~~l~~~~~~~i~~ai~ia--~kq~~~~l~ 241 (251)
T PF11932_consen 164 YGRTIEVYQGTITLDGEERQVDFLRLGRVALYYQTLDGSQAGVWDPATGQWQWLPDSYRREIRKAIRIA--RKQRAPELL 241 (251)
T ss_pred hCCceeEEEEEEeECCeEEEEEEEeecchhheeECCCccceeeecCCCCCCeECCHHHHHHHHHHHHHH--hCCCCcHHh
Confidence 69888887 44221 13556666653 46677777777778778888888888754 566666664
No 15
>PRK09039 hypothetical protein; Validated
Probab=89.26 E-value=4.4 Score=39.40 Aligned_cols=50 Identities=14% Similarity=0.078 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHhhceEEEeeCCeeEE
Q psy9275 161 YKAAKLNNKIKSLEL-QGKRLREVYKAASQEFRETVYLLFGYKVDRTNCMYKL 212 (284)
Q Consensus 161 ~E~~~Lk~qi~~~eK-r~~RLKEVF~~Ks~EFReav~~LlGYkIdf~ng~~rL 212 (284)
..+..|+..|..+-. +.+.|..+-.+-....|++...--|.+|+ +++|.+
T Consensus 172 ~~i~~L~~~L~~a~~~~~~~l~~~~~~~~~~l~~~~~~~~~iri~--g~~~~~ 222 (343)
T PRK09039 172 AKIADLGRRLNVALAQRVQELNRYRSEFFGRLREILGDREGIRIV--GDRFVF 222 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCCcEEE--CCEEEe
Confidence 446666666554432 23333333222222235555444566665 555544
No 16
>KOG0971|consensus
Probab=88.89 E-value=9.9 Score=41.98 Aligned_cols=35 Identities=17% Similarity=0.359 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcccccccccc
Q psy9275 76 DRAKLEVLEKVIEGYRQRMEHIEADQGLVCVIPGQ 110 (284)
Q Consensus 76 l~~ki~eLE~~l~~~R~~~~~~~~~l~~~~lE~~~ 110 (284)
..+|.+.|+-.+...++++.+++.||+....|...
T Consensus 323 AEERaesLQ~eve~lkEr~deletdlEILKaEmee 357 (1243)
T KOG0971|consen 323 AEERAESLQQEVEALKERVDELETDLEILKAEMEE 357 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666777777777778888888887755555444
No 17
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=88.56 E-value=2.6 Score=36.47 Aligned_cols=29 Identities=24% Similarity=0.229 Sum_probs=21.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy9275 74 GSDRAKLEVLEKVIEGYRQRMEHIEADQG 102 (284)
Q Consensus 74 ~~l~~ki~eLE~~l~~~R~~~~~~~~~l~ 102 (284)
+.+..+|..||+.|+...+....+..+.+
T Consensus 20 dsle~~v~~LEreLe~~q~~~e~~~~daE 48 (140)
T PF10473_consen 20 DSLEDHVESLERELEMSQENKECLILDAE 48 (140)
T ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 46777888888887777777776666654
No 18
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=88.14 E-value=5.3 Score=35.45 Aligned_cols=141 Identities=15% Similarity=0.195 Sum_probs=34.8
Q ss_pred HHHHHhhhhhh-hHHHHHHHhhccccccc------CCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccc
Q psy9275 41 EKELKEKVDHL-TYQMEWRALKGNATFSE------SAAPPGSDRAKLEVLEKVIEGYRQRMEHIEADQGLVCVIPGQNSE 113 (284)
Q Consensus 41 ~~~~~~~~~~~-~~e~e~~~lk~~~~~~e------~~~~~~~l~~ki~eLE~~l~~~R~~~~~~~~~l~~~~lE~~~~~g 113 (284)
+..|-+..++. .+.-+...|.....+.. +++........+..++..+...|.++..+...-+ .+..
T Consensus 23 i~ay~~L~d~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~ELael~r~~~-------el~~ 95 (194)
T PF08614_consen 23 IDAYNRLADRTSLLKAENEQLQPEAESLPSSSSSSPSESGSVSSAQISSLEQKLAKLQEELAELYRSKG-------ELAQ 95 (194)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-------cccc
Confidence 44444444544 55555555555422211 1122334556777777777777766666544432 1111
Q ss_pred ccccccceeeeeecccCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH------------HHHHHHHHHHHhHHHHHHHHH
Q psy9275 114 KVAQQKVQELQMEADNNRETVKQMAGMQKLNSKIKSLELQGKRLREV------------YKAAKLNNKIKSLELQGKRLR 181 (284)
Q Consensus 114 ~~~~~~tkvlIL~lr~NP~a~~~~~~le~Lk~ENe~L~~~l~~~e~~------------~E~~~Lk~qi~~~eKr~~RLK 181 (284)
.+......+. .++. ........|..|+.++..|..++..++.. .|+..|+-+...++.+..+|+
T Consensus 96 ~L~~~~~~l~--~l~~--~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~ 171 (194)
T PF08614_consen 96 QLVELNDELQ--ELEK--ELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLE 171 (194)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccc--hhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111111 0000 00011124555555555555555444432 667778888888888888888
Q ss_pred HHHHHHHHHHH
Q psy9275 182 EVYKAASQEFR 192 (284)
Q Consensus 182 EVF~~Ks~EFR 192 (284)
+--..-+...-
T Consensus 172 ~En~~Lv~Rwm 182 (194)
T PF08614_consen 172 EENRELVERWM 182 (194)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77666555443
No 19
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=87.88 E-value=21 Score=34.47 Aligned_cols=46 Identities=20% Similarity=0.276 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHhhceEEEee
Q psy9275 161 YKAAKLNNKIKSLELQGKRLREVYKAASQEFR---ETVYLLFGYKVDRT 206 (284)
Q Consensus 161 ~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFR---eav~~LlGYkIdf~ 206 (284)
.++++++.+|..+++....-+..=..-+...+ ++.-.++||+|.-.
T Consensus 246 ~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~l~g~~~~~~ 294 (312)
T smart00787 246 NKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQSLTGWKITKL 294 (312)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCeeEec
Confidence 55777788888887755432222222222222 34677899999877
No 20
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=87.77 E-value=13 Score=35.71 Aligned_cols=58 Identities=14% Similarity=-0.028 Sum_probs=34.4
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhhhhh------HHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy9275 129 NNRETVKQMAGMQKLNSKIKSLELQGKRLRE------VYKAAKLNNKIKSLELQGKRLREVYKA 186 (284)
Q Consensus 129 ~NP~a~~~~~~le~Lk~ENe~L~~~l~~~e~------~~E~~~Lk~qi~~~eKr~~RLKEVF~~ 186 (284)
+||..+.-..+++.|++.......++..... ..+..+|+.+.+.+++..+-+-.-+.+
T Consensus 240 ~~P~v~~l~~~i~~l~~~i~~e~~~i~~~~~~~l~~~~~~~~~L~re~~~a~~~y~~~l~r~~~ 303 (362)
T TIGR01010 240 QNPQVPSLQARIKSLRKQIDEQRNQLSGGLGDSLNEQTADYQRLVLQNELAQQQLKAALTSLQQ 303 (362)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3886555444577777777776666654321 156667777777766665554444443
No 21
>KOG0977|consensus
Probab=87.50 E-value=9.4 Score=39.75 Aligned_cols=21 Identities=19% Similarity=0.292 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhh
Q psy9275 139 GMQKLNSKIKSLELQGKRLRE 159 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~ 159 (284)
++..|++||.+|...|.....
T Consensus 170 e~~~Lk~en~rl~~~l~~~r~ 190 (546)
T KOG0977|consen 170 ELKRLKAENSRLREELARARK 190 (546)
T ss_pred HHHHHHHHhhhhHHHHHHHHH
Confidence 888999999999888777654
No 22
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=87.31 E-value=3.1 Score=38.87 Aligned_cols=56 Identities=21% Similarity=0.265 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9275 139 GMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRLREVYKAASQEFRETVY 196 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFReav~ 196 (284)
....+..++..|+..+.... ....+|+.+|.++...+..++.++.+.+.+.+.-+.
T Consensus 97 ~~~~le~el~~lrk~ld~~~--~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~~ 152 (312)
T PF00038_consen 97 ERKDLEEELESLRKDLDEET--LARVDLENQIQSLKEELEFLKQNHEEEIEELREQIQ 152 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT--
T ss_pred HHHHHHHHHhhhhhhhhhhh--hhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccc
Confidence 34445555555554433211 345678889999999999999999998888776444
No 23
>KOG4603|consensus
Probab=86.93 E-value=7.7 Score=35.08 Aligned_cols=98 Identities=14% Similarity=0.177 Sum_probs=60.5
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccceeeeeecccCHHHHHHHHHHHHHHHHHHHH
Q psy9275 71 APPGSDRAKLEVLEKVIEGYRQRMEHIEADQGLVCVIPGQNSEKVAQQKVQELQMEADNNRETVKQMAGMQKLNSKIKSL 150 (284)
Q Consensus 71 ~~~~~l~~ki~eLE~~l~~~R~~~~~~~~~l~~~~lE~~~~~g~~~~~~tkvlIL~lr~NP~a~~~~~~le~Lk~ENe~L 150 (284)
++.+.|..+|..|+.-++.+++..+-.++++- .|.+|--...=.+.+..|++|+..-
T Consensus 79 eel~~ld~~i~~l~ek~q~l~~t~s~veaEik-----------------------~L~s~Lt~eemQe~i~~L~kev~~~ 135 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSLQQTCSYVEAEIK-----------------------ELSSALTTEEMQEEIQELKKEVAGY 135 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHhcChHHHHHHHHHHHHHHHHH
Confidence 55666888888888888888887777777762 2333331111112677899999999
Q ss_pred HHHHhhhhhH------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9275 151 ELQGKRLREV------YKAAKLNNKIKSLELQGKRLREVYKAASQEFRETVYLL 198 (284)
Q Consensus 151 ~~~l~~~e~~------~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFReav~~L 198 (284)
+++|.+...+ .++.+....-+.. ...|.+.-.=||+.+-.+
T Consensus 136 ~erl~~~k~g~~~vtpedk~~v~~~y~~~-------~~~wrk~krmf~ei~d~~ 182 (201)
T KOG4603|consen 136 RERLKNIKAGTNHVTPEDKEQVYREYQKY-------CKEWRKRKRMFREIIDKL 182 (201)
T ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 9999888876 3444444444444 444444444455555444
No 24
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=85.61 E-value=18 Score=38.32 Aligned_cols=52 Identities=10% Similarity=0.068 Sum_probs=31.4
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHhHHHHHHH
Q psy9275 128 DNNRETVKQMAGMQKLNSKIKSLELQGKRLREV-YKAAKLNNKIKSLELQGKR 179 (284)
Q Consensus 128 r~NP~a~~~~~~le~Lk~ENe~L~~~l~~~e~~-~E~~~Lk~qi~~~eKr~~R 179 (284)
.+||..+.-..++..|+++.+++..++..+... .++.+|+.+.+..+.-...
T Consensus 336 ~~hP~v~~l~~~~~~L~~~~~~l~~~~~~~p~~e~~~~~L~R~~~~~~~lY~~ 388 (726)
T PRK09841 336 KDHPTYRALLEKRQTLEQERKRLNKRVSAMPSTQQEVLRLSRDVEAGRAVYLQ 388 (726)
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 457855442224677888888888777766543 5566666665555544433
No 25
>PRK14127 cell division protein GpsB; Provisional
Probab=85.42 E-value=2.3 Score=35.32 Aligned_cols=58 Identities=12% Similarity=0.304 Sum_probs=34.1
Q ss_pred cCH----HHHHHHH-HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH--------------------hHHHHHHHH-HH
Q psy9275 129 NNR----ETVKQMA-GMQKLNSKIKSLELQGKRLREVYKAAKLNNKIK--------------------SLELQGKRL-RE 182 (284)
Q Consensus 129 ~NP----~a~~~~~-~le~Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi~--------------------~~eKr~~RL-KE 182 (284)
-|| ++.++.. +.+.|..||.+|..++..++ .++.+++.++. ..=||+.|| |+
T Consensus 23 Yd~~EVD~FLd~V~~dye~l~~e~~~Lk~e~~~l~--~~l~e~~~~~~~~~~~~~~~~~~~~~~~tn~DiLKRls~LEk~ 100 (109)
T PRK14127 23 YDQDEVDKFLDDVIKDYEAFQKEIEELQQENARLK--AQVDELTKQVSVGASSSSVATTQPSSSATNYDILKRLSNLEKH 100 (109)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhccccccccccccCCCCCcchHHHHHHHHHHHHH
Confidence 488 3344443 77777777777777776666 33334443332 234666666 67
Q ss_pred HHHHHH
Q psy9275 183 VYKAAS 188 (284)
Q Consensus 183 VF~~Ks 188 (284)
||++++
T Consensus 101 VFg~~~ 106 (109)
T PRK14127 101 VFGSQL 106 (109)
T ss_pred Hhcccc
Confidence 777654
No 26
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=85.39 E-value=7.4 Score=41.03 Aligned_cols=28 Identities=11% Similarity=0.243 Sum_probs=17.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy9275 75 SDRAKLEVLEKVIEGYRQRMEHIEADQG 102 (284)
Q Consensus 75 ~l~~ki~eLE~~l~~~R~~~~~~~~~l~ 102 (284)
...+++..+++.+..++.+++.|+..++
T Consensus 419 ~~~~~i~~~~~~ve~l~~e~~~L~~~~e 446 (652)
T COG2433 419 VYEKRIKKLEETVERLEEENSELKRELE 446 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666666666665554
No 27
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=85.39 E-value=14 Score=34.68 Aligned_cols=104 Identities=14% Similarity=0.169 Sum_probs=63.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccc--c--------------------ccccccccceeeeeecccCH
Q psy9275 74 GSDRAKLEVLEKVIEGYRQRMEHIEADQGLVCVIPGQ--N--------------------SEKVAQQKVQELQMEADNNR 131 (284)
Q Consensus 74 ~~l~~ki~eLE~~l~~~R~~~~~~~~~l~~~~lE~~~--~--------------------~g~~~~~~tkvlIL~lr~NP 131 (284)
+.+..++.+|+..+++.++.++.+|.||...+.+... . .|...|..+-+ .-..++
T Consensus 2 ~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~---~~~~~~ 78 (248)
T PF08172_consen 2 EELQKELSELEAKLEEQKELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSII---GGGGDS 78 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccCC---CCCCcc
Confidence 3577888999999999999999999999643222000 0 01122221111 001222
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHH
Q psy9275 132 ETVK-QMAGMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRLRE 182 (284)
Q Consensus 132 ~a~~-~~~~le~Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi~~~eKr~~RLKE 182 (284)
.... -.++-|+.+.-|.+|.+.++... .++..|+.+|+++.+-|..|=|
T Consensus 79 siLpIVtsQRDRFR~Rn~ELE~elr~~~--~~~~~L~~Ev~~L~~DN~kLYE 128 (248)
T PF08172_consen 79 SILPIVTSQRDRFRQRNAELEEELRKQQ--QTISSLRREVESLRADNVKLYE 128 (248)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 11245677777777777776655 6788899999999888877655
No 28
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=84.74 E-value=23 Score=36.96 Aligned_cols=28 Identities=29% Similarity=0.379 Sum_probs=19.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy9275 74 GSDRAKLEVLEKVIEGYRQRMEHIEADQ 101 (284)
Q Consensus 74 ~~l~~ki~eLE~~l~~~R~~~~~~~~~l 101 (284)
..+..+|..|+..|...+.+...+....
T Consensus 167 ~~l~~~v~~l~~eL~~~~ee~e~L~~~~ 194 (546)
T PF07888_consen 167 EQLREEVERLEAELEQEEEEMEQLKQQQ 194 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577777888877777777777666544
No 29
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=83.51 E-value=4.1 Score=38.27 Aligned_cols=48 Identities=21% Similarity=0.349 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy9275 139 GMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRLREVYKAAS 188 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks 188 (284)
.++.+++|++.|+..+..++ .++.+++..++++++.+.||-|+|...-
T Consensus 143 kl~E~~~EkeeL~~eleele--~e~ee~~erlk~le~E~s~LeE~~~~l~ 190 (290)
T COG4026 143 KLEELQKEKEELLKELEELE--AEYEEVQERLKRLEVENSRLEEMLKKLP 190 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 68899999999999988887 7888999999999999999999988744
No 30
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=83.44 E-value=16 Score=35.06 Aligned_cols=23 Identities=30% Similarity=0.307 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHH
Q psy9275 161 YKAAKLNNKIKSLELQGKRLREV 183 (284)
Q Consensus 161 ~E~~~Lk~qi~~~eKr~~RLKEV 183 (284)
.++..++.+|+..+.+.+.+.+-
T Consensus 237 ~el~~l~~~i~~~~~~k~~l~~e 259 (325)
T PF08317_consen 237 EELEELEEKIEELEEQKQELLAE 259 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444333
No 31
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=83.33 E-value=33 Score=30.66 Aligned_cols=89 Identities=22% Similarity=0.295 Sum_probs=57.5
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccceeeeeecccCHHHH-HHHHHHHHHHHHHHH
Q psy9275 71 APPGSDRAKLEVLEKVIEGYRQRMEHIEADQGLVCVIPGQNSEKVAQQKVQELQMEADNNRETV-KQMAGMQKLNSKIKS 149 (284)
Q Consensus 71 ~~~~~l~~ki~eLE~~l~~~R~~~~~~~~~l~~~~lE~~~~~g~~~~~~tkvlIL~lr~NP~a~-~~~~~le~Lk~ENe~ 149 (284)
.....+..++.+|.+.++..+..++.+...++.. . .| |.+..-+ ..+++++.|+.+++.
T Consensus 62 ~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~--~----~~--------------r~~~~eR~~~l~~l~~l~~~~~~ 121 (188)
T PF03962_consen 62 QAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEA--K----KG--------------REESEEREELLEELEELKKELKE 121 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H----hc--------------ccccHHHHHHHHHHHHHHHHHHH
Confidence 3444688889999999999999999888887510 0 01 2222222 344689999999999
Q ss_pred HHHHHhhhhhH--HHHHHHHHHHHhHHHHHHH
Q psy9275 150 LELQGKRLREV--YKAAKLNNKIKSLELQGKR 179 (284)
Q Consensus 150 L~~~l~~~e~~--~E~~~Lk~qi~~~eKr~~R 179 (284)
|...+...... ..+..++.++..+.....|
T Consensus 122 l~~el~~~~~~Dp~~i~~~~~~~~~~~~~anr 153 (188)
T PF03962_consen 122 LKKELEKYSENDPEKIEKLKEEIKIAKEAANR 153 (188)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 99888854432 4455555555544444433
No 32
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=83.30 E-value=27 Score=32.52 Aligned_cols=58 Identities=26% Similarity=0.282 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhH--HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9275 139 GMQKLNSKIKSLELQGKRLREV--YKAAKLNNKIKSLELQGKRLREVYKAASQEFRETVY 196 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~--~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFReav~ 196 (284)
+++.|+..|..|..++..++.. .+....+..|..++..+..++.--.....+|.+-+.
T Consensus 231 el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~ 290 (312)
T PF00038_consen 231 ELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQELLD 290 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555443 456666777777777777777777777777766443
No 33
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=82.67 E-value=21 Score=34.76 Aligned_cols=112 Identities=14% Similarity=0.134 Sum_probs=71.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhccccccccccc-------ccccccccceeeeeecccCH--------HHHHHHH-
Q psy9275 75 SDRAKLEVLEKVIEGYRQRMEHIEADQGLVCVIPGQN-------SEKVAQQKVQELQMEADNNR--------ETVKQMA- 138 (284)
Q Consensus 75 ~l~~ki~eLE~~l~~~R~~~~~~~~~l~~~~lE~~~~-------~g~~~~~~tkvlIL~lr~NP--------~a~~~~~- 138 (284)
.|..+++.||..+...++.+.++..++. +.-+-++. ...-....+. ++.|+ .....+.
T Consensus 94 ~L~~~~~~le~~L~~~~e~v~qLrHeL~-~kdeLL~~ys~~~ee~~~~~~~~~~-----~~~~~~~~~~~~~~~le~Lq~ 167 (306)
T PF04849_consen 94 DLSERNEALEEQLGAALEQVEQLRHELS-MKDELLQIYSNDDEESEPESSESTP-----LRRNESSLSSQKCIQLEALQE 167 (306)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCcHhhhcccccCCCcc-----ccccccccccccchhHHHHHH
Confidence 6789999999999999999999998886 32222111 1111111111 12222 1112222
Q ss_pred HHHHHHHHHHHHHHHHhhhhhH------HH---HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy9275 139 GMQKLNSKIKSLELQGKRLREV------YK---AAKLNNKIKSLELQGKRLREVYKAASQEFR 192 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~------~E---~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFR 192 (284)
.+..|..||..|+.....+... +| +.+--+++..++..+..|-+.-..|..++.
T Consensus 168 Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~ 230 (306)
T PF04849_consen 168 KLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENR 230 (306)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHH
Confidence 5888999999999877766543 12 334446778888888888888888887765
No 34
>PRK11281 hypothetical protein; Provisional
Probab=81.96 E-value=16 Score=41.06 Aligned_cols=136 Identities=13% Similarity=0.072 Sum_probs=75.7
Q ss_pred hHHHHHHHhhccccccc----CCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccceeeee--
Q psy9275 52 TYQMEWRALKGNATFSE----SAAPPGSDRAKLEVLEKVIEGYRQRMEHIEADQGLVCVIPGQNSEKVAQQKVQELQM-- 125 (284)
Q Consensus 52 ~~e~e~~~lk~~~~~~e----~~~~~~~l~~ki~eLE~~l~~~R~~~~~~~~~l~~~~lE~~~~~g~~~~~~tkvlIL-- 125 (284)
....++..+|....+.. .+.+...++.++.+++..+++.+..++.....+...+-.+.+.+.......++.--+
T Consensus 98 ~a~~~Le~Lk~~~~~~~~~~~~~~Sl~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~ 177 (1113)
T PRK11281 98 QAQAELEALKDDNDEETRETLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRN 177 (1113)
T ss_pred HHHHHHHHhhccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHH
Confidence 34445555665432221 112334588888888888888888888877776543333333332222111110000
Q ss_pred eccc-----CH--HH-HHHHH-HHHHHHHHHHHHHHHHhhhhhHHH-----HHHHHHHHHhHHHHHHHHHHHHHHH
Q psy9275 126 EADN-----NR--ET-VKQMA-GMQKLNSKIKSLELQGKRLREVYK-----AAKLNNKIKSLELQGKRLREVYKAA 187 (284)
Q Consensus 126 ~lr~-----NP--~a-~~~~~-~le~Lk~ENe~L~~~l~~~e~~~E-----~~~Lk~qi~~~eKr~~RLKEVF~~K 187 (284)
.+.. .| ++ +..+. ++.+|+.+|+-++..+.......+ .+.+..++..++...+.|.+.-+.|
T Consensus 178 ~L~~~~~~~~~l~~~~~~~l~ae~~~l~~~~~~~~~~l~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~k 253 (1113)
T PRK11281 178 LLKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAINSK 253 (1113)
T ss_pred HHhCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112 12 22 23443 788888888888888776655433 3344557777788888888777764
No 35
>PRK11637 AmiB activator; Provisional
Probab=81.91 E-value=28 Score=34.36 Aligned_cols=49 Identities=18% Similarity=0.215 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy9275 140 MQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRLREVYKAASQE 190 (284)
Q Consensus 140 le~Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~E 190 (284)
+..+..+...+...+...+ .++..++.+|..++.+...+++.+...+..
T Consensus 84 i~~~~~~i~~~~~~i~~~~--~ei~~l~~eI~~~q~~l~~~~~~l~~rlra 132 (428)
T PRK11637 84 ISQASRKLRETQNTLNQLN--KQIDELNASIAKLEQQQAAQERLLAAQLDA 132 (428)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333 566777777777777777777777665444
No 36
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=81.40 E-value=9.8 Score=40.10 Aligned_cols=53 Identities=23% Similarity=0.204 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhH-------------------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy9275 139 GMQKLNSKIKSLELQGKRLREV-------------------YKAAKLNNKIKSLELQGKRLREVYKAASQEF 191 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~-------------------~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EF 191 (284)
++.+.-..|..|+.+|..++.+ +-..+|.+++..++-+...+++.+..|..+.
T Consensus 154 t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~ 225 (617)
T PF15070_consen 154 TASRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEA 225 (617)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 4444555666777777766664 1134666677777777777888877776644
No 37
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=80.39 E-value=40 Score=31.65 Aligned_cols=53 Identities=25% Similarity=0.325 Sum_probs=32.4
Q ss_pred hhhhhHHHHHHHHhh-hhhh-hHHHHHHHhhcccccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy9275 33 RERDELLREKELKEK-VDHL-TYQMEWRALKGNATFSESAAPPGSDRAKLEVLEKVIEGYRQRMEHIEADQ 101 (284)
Q Consensus 33 ~~~~~~~~~~~~~~~-~~~~-~~e~e~~~lk~~~~~~e~~~~~~~l~~ki~eLE~~l~~~R~~~~~~~~~l 101 (284)
..++++-.++..++. |++. .+++|+..+ ...|..+|..|+..|.+++..+..+
T Consensus 28 ~~~~~l~k~~~e~e~~~~~~~~~~~e~e~l----------------e~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 28 EIRKALKKAKAELEALNKALEALEIELEDL----------------ENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444443 3333 666665444 4555788888888888888777666
No 38
>KOG0995|consensus
Probab=79.90 E-value=63 Score=34.02 Aligned_cols=36 Identities=8% Similarity=0.139 Sum_probs=15.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9275 163 AAKLNNKIKSLELQGKRLREVYKAASQEFRETVYLL 198 (284)
Q Consensus 163 ~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFReav~~L 198 (284)
+..|.+++-..+...++-.+--.++...|-..++.|
T Consensus 355 ~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l~~~i 390 (581)
T KOG0995|consen 355 LDRLSKEVWELKLEIEDFFKELEKKFIDLNSLIRRI 390 (581)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444443
No 39
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.72 E-value=27 Score=27.27 Aligned_cols=57 Identities=19% Similarity=0.333 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy9275 138 AGMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRLREVYKAASQEFRETVYLLFG 200 (284)
Q Consensus 138 ~~le~Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFReav~~LlG 200 (284)
.++..|+-|++.|+++-..+. .|...++...+.++.++.-||+--. ..-+-+.+|+|
T Consensus 18 dTI~LLQmEieELKEknn~l~--~e~q~~q~~reaL~~eneqlk~e~~----~WQerlrsLLG 74 (79)
T COG3074 18 DTITLLQMEIEELKEKNNSLS--QEVQNAQHQREALERENEQLKEEQN----GWQERLRALLG 74 (79)
T ss_pred HHHHHHHHHHHHHHHHhhHhH--HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHh
Confidence 488999999999988765544 7788888899999999999988643 35556677777
No 40
>PRK11519 tyrosine kinase; Provisional
Probab=79.62 E-value=39 Score=35.84 Aligned_cols=49 Identities=8% Similarity=0.073 Sum_probs=28.4
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHhHHHH
Q psy9275 128 DNNRETVKQMAGMQKLNSKIKSLELQGKRLREV-YKAAKLNNKIKSLELQ 176 (284)
Q Consensus 128 r~NP~a~~~~~~le~Lk~ENe~L~~~l~~~e~~-~E~~~Lk~qi~~~eKr 176 (284)
.+||..+.-.+++..|+++.+.+..++..+... .++.+|+.+.+..+.-
T Consensus 336 ~~hP~v~~l~~~~~~L~~~~~~l~~~~~~lp~~e~~~~~L~Re~~~~~~l 385 (719)
T PRK11519 336 KEHPAYRTLLEKRKALEDEKAKLNGRVTAMPKTQQEIVRLTRDVESGQQV 385 (719)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 347754442234567777777777777665543 4555666555554443
No 41
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=79.14 E-value=16 Score=38.60 Aligned_cols=44 Identities=25% Similarity=0.271 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhH-HHH----HHHHHHHHhHHHHHHHHHH
Q psy9275 139 GMQKLNSKIKSLELQGKRLREV-YKA----AKLNNKIKSLELQGKRLRE 182 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~-~E~----~~Lk~qi~~~eKr~~RLKE 182 (284)
+++.|+.|.+.|..++...-.. ..+ .+.+..|..++.+..|+.+
T Consensus 88 E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e 136 (617)
T PF15070_consen 88 EAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQE 136 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666777777776666553222 111 2223345555555555554
No 42
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=79.14 E-value=16 Score=39.52 Aligned_cols=104 Identities=13% Similarity=0.218 Sum_probs=68.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccceeeeeecccCHHH-HHHH---HHHHHHHHHHHH
Q psy9275 74 GSDRAKLEVLEKVIEGYRQRMEHIEADQGLVCVIPGQNSEKVAQQKVQELQMEADNNRET-VKQM---AGMQKLNSKIKS 149 (284)
Q Consensus 74 ~~l~~ki~eLE~~l~~~R~~~~~~~~~l~~~~lE~~~~~g~~~~~~tkvlIL~lr~NP~a-~~~~---~~le~Lk~ENe~ 149 (284)
..+..|++..|+....++=++..+.++|+. +..-.+|+.... -.+ .+++ ..+..|.+||.+
T Consensus 137 ~~l~~~l~~~eken~~Lkye~~~~~kelei-----r~~E~~~~~~~a----------e~a~kqhle~vkkiakLEaEC~r 201 (769)
T PF05911_consen 137 EDLMARLESTEKENSSLKYELHVLSKELEI-----RNEEREYSRRAA----------EAASKQHLESVKKIAKLEAECQR 201 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhHHHH----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777777777777777651 111111211100 012 2333 389999999999
Q ss_pred HHHHHhhhhhH---------------------------------------------HHHHHHHHHHHhHHHHHHHHHHHH
Q psy9275 150 LELQGKRLREV---------------------------------------------YKAAKLNNKIKSLELQGKRLREVY 184 (284)
Q Consensus 150 L~~~l~~~e~~---------------------------------------------~E~~~Lk~qi~~~eKr~~RLKEVF 184 (284)
|+..+++--+| .+..-|-.++-..+-.+.-|||+.
T Consensus 202 Lr~l~rk~lpgpaa~a~mk~ev~~~~~~~~~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~eeEnk~Lke~l 281 (769)
T PF05911_consen 202 LRALVRKKLPGPAALAQMKNEVESLGRDSGENRRRRSPSRPSSPHDFSPQNPQKRSKESEFLTERLQAMEEENKMLKEAL 281 (769)
T ss_pred HHHHHhccCCChHHHHHhHHHHHHhccccccccCCCCCCcccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99998885554 234455567777888889999999
Q ss_pred HHHHHHHH
Q psy9275 185 KAASQEFR 192 (284)
Q Consensus 185 ~~Ks~EFR 192 (284)
++|-.|.-
T Consensus 282 ~~k~~ELq 289 (769)
T PF05911_consen 282 AKKNSELQ 289 (769)
T ss_pred HHHHHHHH
Confidence 99988753
No 43
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=78.71 E-value=85 Score=32.87 Aligned_cols=13 Identities=8% Similarity=0.082 Sum_probs=7.3
Q ss_pred hHHHHHHHhhccc
Q psy9275 52 TYQMEWRALKGNA 64 (284)
Q Consensus 52 ~~e~e~~~lk~~~ 64 (284)
.++.|+..+..+.
T Consensus 402 ~~e~el~~l~~~l 414 (650)
T TIGR03185 402 ELEEELAEVDKKI 414 (650)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555554
No 44
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=77.34 E-value=9 Score=36.30 Aligned_cols=43 Identities=19% Similarity=0.238 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHH
Q psy9275 136 QMAGMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRLREV 183 (284)
Q Consensus 136 ~~~~le~Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi~~~eKr~~RLKEV 183 (284)
....+..|++||++|++++..+. .+++.....++..+.||++.
T Consensus 64 ~~~~~~~l~~EN~~Lr~e~~~l~-----~~~~~~~~~l~~EN~rLr~L 106 (283)
T TIGR00219 64 NLKDVNNLEYENYKLRQELLKKN-----QQLEILTQNLKQENVRLREL 106 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Confidence 44588899999999998876542 24444455588888999886
No 45
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=76.30 E-value=7.8 Score=36.81 Aligned_cols=45 Identities=22% Similarity=0.317 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy9275 136 QMAGMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRLREVYKA 186 (284)
Q Consensus 136 ~~~~le~Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi~~~eKr~~RLKEVF~~ 186 (284)
.......+..||+.|++++. ++.++..++.+++..++||++.+.-
T Consensus 64 ~~~~~~~~~~en~~Lk~~l~------~~~~~~~~~~~l~~EN~~Lr~lL~~ 108 (284)
T COG1792 64 FLKSLKDLALENEELKKELA------ELEQLLEEVESLEEENKRLKELLDF 108 (284)
T ss_pred HHHHhHHHHHHhHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 44589999999999999975 4558889999999999999998654
No 46
>KOG4673|consensus
Probab=76.01 E-value=51 Score=35.74 Aligned_cols=131 Identities=15% Similarity=0.148 Sum_probs=65.7
Q ss_pred hHHHHHHHhhcccccccC-----CCCCc----chHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccee
Q psy9275 52 TYQMEWRALKGNATFSES-----AAPPG----SDRAKLEVLEKVIEGYRQRMEHIEADQGLVCVIPGQNSEKVAQQKVQE 122 (284)
Q Consensus 52 ~~e~e~~~lk~~~~~~e~-----~~~~~----~l~~ki~eLE~~l~~~R~~~~~~~~~l~~~~lE~~~~~g~~~~~~tkv 122 (284)
++-.|++.|.-..-.+|. ...|. -|-++|+.|++.++..-.--+.++..| ...++.+.|..
T Consensus 609 ~~R~Ei~~LqrRlqaaE~R~eel~q~v~~TTrPLlRQIE~lQ~tl~~~~tawereE~~l----------~~rL~dSQtll 678 (961)
T KOG4673|consen 609 MFRGEIEDLQRRLQAAERRCEELIQQVPETTRPLLRQIEALQETLSKAATAWEREERSL----------NERLSDSQTLL 678 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhhhhhHHHHHHHHH----------HHhhhhHHHHH
Confidence 666677777665544441 11121 277888888887776555444444444 23333333422
Q ss_pred eeeecccCH---HHHH-HH-----H-HHHHHHHHHHHHHHHHhhhhhH------------HHHHHHHHHHHhHHHHHHHH
Q psy9275 123 LQMEADNNR---ETVK-QM-----A-GMQKLNSKIKSLELQGKRLREV------------YKAAKLNNKIKSLELQGKRL 180 (284)
Q Consensus 123 lIL~lr~NP---~a~~-~~-----~-~le~Lk~ENe~L~~~l~~~e~~------------~E~~~Lk~qi~~~eKr~~RL 180 (284)
+|+.++.-- +... +. . .+..|++|+.+|.+++..-... -|+..|+..+.+++--++|+
T Consensus 679 r~~v~~eqgekqElL~~~~~l~s~~~q~sllraE~~~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le~e~r~~ 758 (961)
T KOG4673|consen 679 RINVLEEQGEKQELLSLNFSLPSSPIQLSLLRAEQGQLSKSLEKERNRAAENRQEYLAAQEEADTLEGRANQLEVEIREL 758 (961)
T ss_pred HHHHHHHhhhHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222221100 0000 00 1 5677888888887776543221 23444555555555555555
Q ss_pred HHHHHHHHHHHH
Q psy9275 181 REVYKAASQEFR 192 (284)
Q Consensus 181 KEVF~~Ks~EFR 192 (284)
|+--+..-++-+
T Consensus 759 k~~~~q~lq~~l 770 (961)
T KOG4673|consen 759 KRKHKQELQEVL 770 (961)
T ss_pred HHHHHHHhhHHH
Confidence 555555444443
No 47
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=75.74 E-value=27 Score=29.19 Aligned_cols=27 Identities=15% Similarity=0.256 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy9275 76 DRAKLEVLEKVIEGYRQRMEHIEADQG 102 (284)
Q Consensus 76 l~~ki~eLE~~l~~~R~~~~~~~~~l~ 102 (284)
+...+..+....+.|...+..+..|+.
T Consensus 8 l~~e~~~~~~~~~~~~~~~~~~~~dl~ 34 (132)
T PF07926_consen 8 LQSELQRLKEQEEDAEEQLQSLREDLE 34 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555555555553
No 48
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=75.73 E-value=83 Score=30.74 Aligned_cols=18 Identities=0% Similarity=0.082 Sum_probs=11.7
Q ss_pred eeeccccccchhhhhhhH
Q psy9275 21 LVELGYLSSNRERERDEL 38 (284)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~ 38 (284)
+++++|...+.+.-.+=+
T Consensus 133 ii~is~~~~dp~~A~~i~ 150 (444)
T TIGR03017 133 VISIEFSGVDPRFAATVA 150 (444)
T ss_pred EEEEEEeCCCHHHHHHHH
Confidence 667778777766554433
No 49
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=75.32 E-value=10 Score=32.80 Aligned_cols=57 Identities=25% Similarity=0.355 Sum_probs=42.1
Q ss_pred HHHHHhhhhhhhHHHHHHHhhcccccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHh
Q psy9275 41 EKELKEKVDHLTYQMEWRALKGNATFSESAAPPGSDRAKLEVLEKVIEGYRQRMEHIEA 99 (284)
Q Consensus 41 ~~~~~~~~~~~~~e~e~~~lk~~~~~~e~~~~~~~l~~ki~eLE~~l~~~R~~~~~~~~ 99 (284)
..+|.+.+. .++.+++.|.+...+..+....+.+...|.+|+..+..+.+++..+..
T Consensus 81 i~~L~~el~--~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 81 IKELREELA--ELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555555 677777777777666666666777999999999888888888877655
No 50
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=75.18 E-value=32 Score=26.59 Aligned_cols=52 Identities=21% Similarity=0.233 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhH-------------HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy9275 138 AGMQKLNSKIKSLELQGKRLREV-------------YKAAKLNNKIKSLELQGKRLREVYKAASQ 189 (284)
Q Consensus 138 ~~le~Lk~ENe~L~~~l~~~e~~-------------~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~ 189 (284)
.+++.|+.||=.|+-++.-++.. .+.-+|+.++.++.+.+++++........
T Consensus 7 ~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~ 71 (75)
T PF07989_consen 7 EQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEAEK 71 (75)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999888777664 44557888888888888888877655433
No 51
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=74.70 E-value=2.7 Score=33.60 Aligned_cols=40 Identities=18% Similarity=0.154 Sum_probs=21.0
Q ss_pred ccCHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhH---HHHHHHHH
Q psy9275 128 DNNRE-TVKQMAGMQKLNSKIKSLELQGKRLREV---YKAAKLNN 168 (284)
Q Consensus 128 r~NP~-a~~~~~~le~Lk~ENe~L~~~l~~~e~~---~E~~~Lk~ 168 (284)
-.||. ++-.+ +--.|++||.+|+.-....+.. .+++.|+.
T Consensus 41 e~nPevtr~A~-EN~rL~ee~rrl~~f~~~gerE~l~~eis~L~~ 84 (86)
T PF12711_consen 41 EHNPEVTRFAM-ENIRLREELRRLQSFYVEGEREMLLQEISELRD 84 (86)
T ss_pred HhCHHHHHHHH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 34883 33343 4556777777776665333322 44555544
No 52
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=74.46 E-value=52 Score=37.13 Aligned_cols=24 Identities=13% Similarity=0.144 Sum_probs=11.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Q psy9275 75 SDRAKLEVLEKVIEGYRQRMEHIE 98 (284)
Q Consensus 75 ~l~~ki~eLE~~l~~~R~~~~~~~ 98 (284)
.+..+|+.+...++..++.....-
T Consensus 729 ~~d~~i~~i~~~i~~~~~~~~~~~ 752 (1201)
T PF12128_consen 729 ELDEQIEQIKQEIAAAKQEAKEQL 752 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555554444444333
No 53
>PHA02562 46 endonuclease subunit; Provisional
Probab=74.37 E-value=1e+02 Score=31.03 Aligned_cols=22 Identities=18% Similarity=0.377 Sum_probs=9.8
Q ss_pred HHHHHhhhhhhhHHHHHHHhhccc
Q psy9275 41 EKELKEKVDHLTYQMEWRALKGNA 64 (284)
Q Consensus 41 ~~~~~~~~~~~~~e~e~~~lk~~~ 64 (284)
.+++...++ .++.++..++++.
T Consensus 176 ~~e~~~~i~--~l~~~i~~l~~~i 197 (562)
T PHA02562 176 IRELNQQIQ--TLDMKIDHIQQQI 197 (562)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHH
Confidence 444444444 4444444444443
No 54
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=74.07 E-value=88 Score=33.12 Aligned_cols=26 Identities=15% Similarity=0.146 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy9275 76 DRAKLEVLEKVIEGYRQRMEHIEADQ 101 (284)
Q Consensus 76 l~~ki~eLE~~l~~~R~~~~~~~~~l 101 (284)
...++.+|+..+...+.+....+..+
T Consensus 235 ~~~~L~~l~~ql~~a~~~~~~a~a~~ 260 (754)
T TIGR01005 235 ATQQLAELNTELSRARANRAAAEGTA 260 (754)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34777777777777776665544443
No 55
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=73.86 E-value=44 Score=29.56 Aligned_cols=37 Identities=19% Similarity=0.270 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9275 161 YKAAKLNNKIKSLELQGKRLREVYKAASQEFRETVYL 197 (284)
Q Consensus 161 ~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFReav~~ 197 (284)
+|++-+++.|.+.++....|...|.+|=.||.++...
T Consensus 84 kEv~~vRkkID~vNreLkpl~~~cqKKEkEykealea 120 (159)
T PF04949_consen 84 KEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEA 120 (159)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999988754
No 56
>PRK11020 hypothetical protein; Provisional
Probab=73.17 E-value=24 Score=29.75 Aligned_cols=37 Identities=22% Similarity=0.196 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9275 161 YKAAKLNNKIKSLELQGKRLREVYKAASQEFRETVYL 197 (284)
Q Consensus 161 ~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFReav~~ 197 (284)
.-++++..+++.+++++.|||.+-..+.+.=+..+-.
T Consensus 31 ~~i~qf~~E~~~l~k~I~~lk~~~~~~lske~~~l~~ 67 (118)
T PRK11020 31 EKYAQFEKEKATLEAEIARLKEVQSQKLSKEAQKLMK 67 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3488999999999999999999988877766655554
No 57
>PRK11637 AmiB activator; Provisional
Probab=72.22 E-value=55 Score=32.37 Aligned_cols=27 Identities=15% Similarity=0.075 Sum_probs=11.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy9275 75 SDRAKLEVLEKVIEGYRQRMEHIEADQ 101 (284)
Q Consensus 75 ~l~~ki~eLE~~l~~~R~~~~~~~~~l 101 (284)
.+..+|..|+..|+.++.++......+
T Consensus 100 ~~~~ei~~l~~eI~~~q~~l~~~~~~l 126 (428)
T PRK11637 100 QLNKQIDELNASIAKLEQQQAAQERLL 126 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 58
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=71.93 E-value=33 Score=26.39 Aligned_cols=37 Identities=14% Similarity=0.244 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHH
Q psy9275 138 AGMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRLREV 183 (284)
Q Consensus 138 ~~le~Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi~~~eKr~~RLKEV 183 (284)
.+++.|+.||+.|+++... |..+...+...+.+|++-
T Consensus 18 eti~~Lq~e~eeLke~n~~---------L~~e~~~L~~en~~L~~e 54 (72)
T PF06005_consen 18 ETIALLQMENEELKEKNNE---------LKEENEELKEENEQLKQE 54 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh---------HHHHHHHHHHHHHHHHHH
Confidence 4889999999999876544 334455555555555543
No 59
>PRK01156 chromosome segregation protein; Provisional
Probab=71.86 E-value=1.3e+02 Score=32.51 Aligned_cols=23 Identities=22% Similarity=0.508 Sum_probs=10.8
Q ss_pred HHHHhhhCCCch-hhhHHhcHHhh
Q psy9275 248 LDLHLGRHHSIP-MLLSALTQELF 270 (284)
Q Consensus 248 i~~wl~~~~SIP-aFLAALTLeLf 270 (284)
+...+...+++| .++.+...++-
T Consensus 850 l~~~~~~~~~~~~ii~ish~~~~~ 873 (895)
T PRK01156 850 IEYSLKDSSDIPQVIMISHHRELL 873 (895)
T ss_pred HHHHHHhcCCCCeEEEEECchHHH
Confidence 333344444443 45566555543
No 60
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=71.71 E-value=67 Score=31.43 Aligned_cols=39 Identities=13% Similarity=0.141 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy9275 139 GMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRLREVYKA 186 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi~~~eKr~~RLKEVF~~ 186 (284)
++|+|-.||.=|.+++. +++.+...+.-.+.++|.+...
T Consensus 190 DIDaLi~ENRyL~erl~---------q~qeE~~l~k~~i~KYK~~le~ 228 (319)
T PF09789_consen 190 DIDALIMENRYLKERLK---------QLQEEKELLKQTINKYKSALER 228 (319)
T ss_pred cHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHh
Confidence 79999999999998876 5667777777778888888764
No 61
>KOG0971|consensus
Probab=71.57 E-value=1.4e+02 Score=33.63 Aligned_cols=13 Identities=38% Similarity=0.478 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHh
Q psy9275 186 AASQEFRETVYLL 198 (284)
Q Consensus 186 ~Ks~EFReav~~L 198 (284)
..|..||+-|..|
T Consensus 525 qTI~KfRelva~L 537 (1243)
T KOG0971|consen 525 QTIKKFRELVAHL 537 (1243)
T ss_pred HHHHHHHHHHHHH
Confidence 3566677766654
No 62
>KOG4360|consensus
Probab=70.87 E-value=56 Score=34.17 Aligned_cols=81 Identities=9% Similarity=0.047 Sum_probs=54.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhccccccccccc--ccccccccceeeeeecccCH--HHHHH-----HH-HHHHHH
Q psy9275 75 SDRAKLEVLEKVIEGYRQRMEHIEADQGLVCVIPGQN--SEKVAQQKVQELQMEADNNR--ETVKQ-----MA-GMQKLN 144 (284)
Q Consensus 75 ~l~~ki~eLE~~l~~~R~~~~~~~~~l~~~~lE~~~~--~g~~~~~~tkvlIL~lr~NP--~a~~~-----~~-~le~Lk 144 (284)
++..+++-||+.++.-.+++..+..++. +..|.++. .+.-+....-|--.-++.|| .+.++ +. .|.-+.
T Consensus 94 ~Lq~~nesLeEqv~~~~d~vvql~hels-~k~ellr~ys~~~ees~~~~v~~~P~~~~~s~S~~~~~~~EaL~ekLk~~~ 172 (596)
T KOG4360|consen 94 ALQEDNESLEEQVDAPWDRVVQLGHELS-RKDELLRGYSAAIEESEAASVCSTPLVSNESRSAFQRELLEALQEKLKPLE 172 (596)
T ss_pred hhhhhhhhhHhhhcchHHHHHHhhhhhh-hhhhhhheeeeccccccccccccCCCccCcchhhHHHHHHHHHHhhcCChH
Confidence 7999999999999999999999999997 77777765 22222222222112456788 32222 22 566677
Q ss_pred HHHHHHHHHHhh
Q psy9275 145 SKIKSLELQGKR 156 (284)
Q Consensus 145 ~ENe~L~~~l~~ 156 (284)
+||..|+.+..-
T Consensus 173 een~~lr~k~~l 184 (596)
T KOG4360|consen 173 EENTQLRSKAML 184 (596)
T ss_pred HHHHHHHHHHHH
Confidence 888888866543
No 63
>KOG0933|consensus
Probab=70.82 E-value=47 Score=37.31 Aligned_cols=28 Identities=29% Similarity=0.334 Sum_probs=20.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy9275 75 SDRAKLEVLEKVIEGYRQRMEHIEADQG 102 (284)
Q Consensus 75 ~l~~ki~eLE~~l~~~R~~~~~~~~~l~ 102 (284)
.-.+|..+|+.+|..+.++++.-.++++
T Consensus 784 ~re~rlkdl~keik~~k~~~e~~~~~~e 811 (1174)
T KOG0933|consen 784 NRERRLKDLEKEIKTAKQRAEESSKELE 811 (1174)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567778888888888888877666664
No 64
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=70.32 E-value=51 Score=31.74 Aligned_cols=48 Identities=15% Similarity=0.257 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhH-----HHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy9275 139 GMQKLNSKIKSLELQGKRLREV-----YKAAKLNNKIKSLELQGKRLREVYKA 186 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~-----~E~~~Lk~qi~~~eKr~~RLKEVF~~ 186 (284)
+++.|+.|.++|.+.|..++.. .++.+++.+.+.++....++-..++.
T Consensus 51 el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~ 103 (314)
T PF04111_consen 51 ELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNE 103 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666666543 44455555444444444444444443
No 65
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=70.28 E-value=47 Score=27.96 Aligned_cols=21 Identities=19% Similarity=0.461 Sum_probs=10.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHH
Q psy9275 169 KIKSLELQGKRLREVYKAASQ 189 (284)
Q Consensus 169 qi~~~eKr~~RLKEVF~~Ks~ 189 (284)
+++.+.....=||++|...+.
T Consensus 97 ~veEL~~Dv~DlK~myr~Qi~ 117 (120)
T PF12325_consen 97 EVEELRADVQDLKEMYREQID 117 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555555444
No 66
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=70.19 E-value=45 Score=36.32 Aligned_cols=62 Identities=18% Similarity=0.210 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhH-------------------HHHHHHHH-------HHHhHHHHHHHHHHHHHHHHHHHH
Q psy9275 139 GMQKLNSKIKSLELQGKRLREV-------------------YKAAKLNN-------KIKSLELQGKRLREVYKAASQEFR 192 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~-------------------~E~~~Lk~-------qi~~~eKr~~RLKEVF~~Ks~EFR 192 (284)
.-+.|+.++++|+.+|...... .|+.+++. +|..+.+++.-|-+.+..|-..-.
T Consensus 337 ~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~ 416 (775)
T PF10174_consen 337 EAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLD 416 (775)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777766655443 22222222 455556666666666666666655
Q ss_pred HHHHHhhc
Q psy9275 193 ETVYLLFG 200 (284)
Q Consensus 193 eav~~LlG 200 (284)
...-.+.+
T Consensus 417 ~~k~Rl~~ 424 (775)
T PF10174_consen 417 EEKERLSS 424 (775)
T ss_pred HHHHHHhc
Confidence 55555443
No 67
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=69.62 E-value=49 Score=29.57 Aligned_cols=21 Identities=33% Similarity=0.479 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhh
Q psy9275 139 GMQKLNSKIKSLELQGKRLRE 159 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~ 159 (284)
.++.|+++++.+..++..+..
T Consensus 70 ~~~~l~~~~~~~~~~i~~l~~ 90 (188)
T PF03962_consen 70 KLEKLQKEIEELEKKIEELEE 90 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666555544
No 68
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=68.62 E-value=63 Score=34.38 Aligned_cols=38 Identities=21% Similarity=0.331 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy9275 139 GMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRLREVYK 185 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi~~~eKr~~RLKEVF~ 185 (284)
+++++..++..|...|. +-+..++.++.+..+|+.++.
T Consensus 475 ei~~~~~~I~~L~~~L~---------e~~~~ve~L~~~l~~l~k~~~ 512 (652)
T COG2433 475 EIRARDRRIERLEKELE---------EKKKRVEELERKLAELRKMRK 512 (652)
T ss_pred HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHh
Confidence 45555555555554332 334456666667777776666
No 69
>KOG0963|consensus
Probab=68.40 E-value=39 Score=35.80 Aligned_cols=62 Identities=16% Similarity=0.155 Sum_probs=37.9
Q ss_pred HHHHHHhhhhhh-hHHHHHHHhhcccccccCC------CCCcchHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy9275 40 REKELKEKVDHL-TYQMEWRALKGNATFSESA------APPGSDRAKLEVLEKVIEGYRQRMEHIEADQ 101 (284)
Q Consensus 40 ~~~~~~~~~~~~-~~e~e~~~lk~~~~~~e~~------~~~~~l~~ki~eLE~~l~~~R~~~~~~~~~l 101 (284)
-|.+|-.++.+. .+|.|+..|.+|...+.++ +..+......-..++.++.+-..+..+++-+
T Consensus 240 im~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~ 308 (629)
T KOG0963|consen 240 IMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASL 308 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 367777777777 8888888888887766644 2333344444445555555555555544444
No 70
>KOG4643|consensus
Probab=67.61 E-value=75 Score=35.77 Aligned_cols=64 Identities=17% Similarity=0.165 Sum_probs=35.0
Q ss_pred HHHHHHHHhhhhhh-----hHHHHHHHhhcccccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy9275 38 LLREKELKEKVDHL-----TYQMEWRALKGNATFSESAAPPGSDRAKLEVLEKVIEGYRQRMEHIEADQ 101 (284)
Q Consensus 38 ~~~~~~~~~~~~~~-----~~e~e~~~lk~~~~~~e~~~~~~~l~~ki~eLE~~l~~~R~~~~~~~~~l 101 (284)
+.|+.||++.|..+ ||+-+|+-+.++..-..-..+.=.+..++.-|+...+-.|.+.+++..+.
T Consensus 263 kdRveelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEn 331 (1195)
T KOG4643|consen 263 KDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEEN 331 (1195)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 46799999998754 55555555555542111111122355555555555555555555555444
No 71
>PRK03918 chromosome segregation protein; Provisional
Probab=67.02 E-value=1.5e+02 Score=31.68 Aligned_cols=10 Identities=20% Similarity=0.328 Sum_probs=4.3
Q ss_pred hhHHhcHHhh
Q psy9275 261 LLSALTQELF 270 (284)
Q Consensus 261 FLAALTLeLf 270 (284)
++.+.-.++.
T Consensus 848 iiith~~~~~ 857 (880)
T PRK03918 848 IIVSHDEELK 857 (880)
T ss_pred EEEECCHHHH
Confidence 4444444444
No 72
>KOG0977|consensus
Probab=66.32 E-value=27 Score=36.45 Aligned_cols=66 Identities=20% Similarity=0.159 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHH----------HHHHHHHHHHHHHHHHh-hceEEEee
Q psy9275 139 GMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRLR----------EVYKAASQEFRETVYLL-FGYKVDRT 206 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi~~~eKr~~RLK----------EVF~~Ks~EFReav~~L-lGYkIdf~ 206 (284)
.+..+++|..-++.++..++ .++..|++++..+..-+.|++ .-+..++++.++-|.-+ .+++.++.
T Consensus 149 ~l~~leAe~~~~krr~~~le--~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~ 225 (546)
T KOG0977|consen 149 RLSELEAEINTLKRRIKALE--DELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIE 225 (546)
T ss_pred hhhhhhhHHHHHHHHHHHHH--HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHH
Confidence 45555566655555555555 334444444444444444444 33445555555544433 45555544
No 73
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=66.31 E-value=28 Score=35.94 Aligned_cols=40 Identities=18% Similarity=0.214 Sum_probs=25.9
Q ss_pred ccccccchhhhhhhHHHHHHHHhhhhhhhHHHHHHHhhcccc
Q psy9275 24 LGYLSSNRERERDELLREKELKEKVDHLTYQMEWRALKGNAT 65 (284)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~~~lk~~~~ 65 (284)
.||..+ ++-.+....+.+-|......-+..|+.-+|++--
T Consensus 19 ~~~~~r--r~~~~~i~~Le~~k~~l~~~pv~~el~kvk~l~l 58 (569)
T PRK04778 19 AGLILR--KRNYKRIDELEERKQELENLPVNDELEKVKKLNL 58 (569)
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCC
Confidence 444444 3444555557777777777778888888887743
No 74
>KOG2129|consensus
Probab=65.95 E-value=1.7e+02 Score=30.21 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhH
Q psy9275 139 GMQKLNSKIKSLELQGKRLREV 160 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~ 160 (284)
.++.|++|.++|+..+...+-.
T Consensus 254 hi~~l~~EveRlrt~l~~Aqk~ 275 (552)
T KOG2129|consen 254 HIDKLQAEVERLRTYLSRAQKS 275 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999988876654
No 75
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=65.74 E-value=20 Score=34.57 Aligned_cols=22 Identities=18% Similarity=0.369 Sum_probs=15.9
Q ss_pred CcchHHHHHHHHHHHHHHHHHH
Q psy9275 73 PGSDRAKLEVLEKVIEGYRQRM 94 (284)
Q Consensus 73 ~~~l~~ki~eLE~~l~~~R~~~ 94 (284)
+...-.||++||..+|.++.+.
T Consensus 13 ~~~aLqKIqelE~QldkLkKE~ 34 (307)
T PF10481_consen 13 PTRALQKIQELEQQLDKLKKER 34 (307)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 4456789999997777776543
No 76
>PRK10884 SH3 domain-containing protein; Provisional
Probab=65.62 E-value=61 Score=29.57 Aligned_cols=54 Identities=17% Similarity=0.288 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhH---------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy9275 140 MQKLNSKIKSLELQGKRLREV---------YKAAKLNNKIKSLELQGKRLREVYKAASQEFRE 193 (284)
Q Consensus 140 le~Lk~ENe~L~~~l~~~e~~---------~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFRe 193 (284)
+..|++|++.|.+++...... ..+++...++..++..+++|++-......+-+.
T Consensus 95 lp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~ 157 (206)
T PRK10884 95 VPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDA 157 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555444444322 335555666777777788887776665555443
No 77
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=65.44 E-value=81 Score=33.92 Aligned_cols=26 Identities=19% Similarity=0.234 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy9275 76 DRAKLEVLEKVIEGYRQRMEHIEADQ 101 (284)
Q Consensus 76 l~~ki~eLE~~l~~~R~~~~~~~~~l 101 (284)
|..|+.+|....+..|+.++.+|+.|
T Consensus 472 Lq~Kl~~L~~aRq~DKq~l~~LEkrL 497 (697)
T PF09726_consen 472 LQNKLQNLVQARQQDKQSLQQLEKRL 497 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444445555555555544
No 78
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=65.42 E-value=55 Score=25.94 Aligned_cols=57 Identities=19% Similarity=0.331 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy9275 138 AGMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRLREVYKAASQEFRETVYLLFG 200 (284)
Q Consensus 138 ~~le~Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFReav~~LlG 200 (284)
.++..|+-|.+.|+++-..+. .+...++..-..++-.++.||+--+. +-+-+.+|+|
T Consensus 18 dtI~LLqmEieELKekn~~L~--~e~~~~~~~r~~L~~en~qLk~E~~~----WqerLr~LLG 74 (79)
T PRK15422 18 DTITLLQMEIEELKEKNNSLS--QEVQNAQHQREELERENNHLKEQQNG----WQERLQALLG 74 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHhhHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 488889999999988765555 45555666556667777777765332 4445566666
No 79
>PF15294 Leu_zip: Leucine zipper
Probab=65.07 E-value=17 Score=34.79 Aligned_cols=37 Identities=22% Similarity=0.297 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhH-----HHHHHHHHHHHhHHH
Q psy9275 139 GMQKLNSKIKSLELQGKRLREV-----YKAAKLNNKIKSLEL 175 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~-----~E~~~Lk~qi~~~eK 175 (284)
++.+|++||+.|+.++..++.. .|...++.++..+..
T Consensus 133 Ei~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 133 EIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999998875 444455555544444
No 80
>KOG4674|consensus
Probab=64.48 E-value=89 Score=37.21 Aligned_cols=29 Identities=21% Similarity=0.265 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy9275 161 YKAAKLNNKIKSLELQGKRLREVYKAASQ 189 (284)
Q Consensus 161 ~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~ 189 (284)
.+++.+..++.+++....||.+.|..+-.
T Consensus 1353 ~e~~~lt~~~~ql~~~~~rL~~~~~e~~~ 1381 (1822)
T KOG4674|consen 1353 NEKANLTKELEQLEDLKTRLAAALSEKNA 1381 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677778888888888888888776443
No 81
>KOG0994|consensus
Probab=63.84 E-value=28 Score=39.73 Aligned_cols=71 Identities=13% Similarity=0.080 Sum_probs=52.2
Q ss_pred chhhhhhhHHHHHHHHhhhhhhhHHHHHHHhhcccc-cccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy9275 30 NRERERDELLREKELKEKVDHLTYQMEWRALKGNAT-FSESAAPPGSDRAKLEVLEKVIEGYRQRMEHIEADQG 102 (284)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~e~e~~~lk~~~~-~~e~~~~~~~l~~ki~eLE~~l~~~R~~~~~~~~~l~ 102 (284)
+|-.++++-+-+-.|..... -+|..|+..|+-.+ +.-++++++.+...+++|++.|.+.+..+..++.+|.
T Consensus 1185 ~~A~~l~~tGv~gay~s~f~--~me~kl~~ir~il~~~svs~~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Ls 1256 (1758)
T KOG0994|consen 1185 NRAKELKQTGVLGAYASRFL--DMEEKLEEIRAILSAPSVSAEDIAQLASATESLRRQLQALTEDLPQEEETLS 1256 (1758)
T ss_pred HHHHHhhhccCchhhHhHHH--HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Confidence 34556666666666666555 56667777777764 3335577888999999999999999999999888884
No 82
>PF07061 Swi5: Swi5; InterPro: IPR010760 This entry represents Swi5 and is involved in meiotic DNA repair synthesis and meiotic joint molecule formation []. It is known to interact with Swi2, Rhp51 and Swi6 [].
Probab=63.81 E-value=41 Score=26.52 Aligned_cols=55 Identities=24% Similarity=0.292 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHH-----HHhHHHHHHHHHHHHHHHHHHHHHHHHHhhce
Q psy9275 140 MQKLNSKIKSLELQGKRLREVYKAAKLNNK-----IKSLELQGKRLREVYKAASQEFRETVYLLFGY 201 (284)
Q Consensus 140 le~Lk~ENe~L~~~l~~~e~~~E~~~Lk~q-----i~~~eKr~~RLKEVF~~Ks~EFReav~~LlGY 201 (284)
++.|.+++++|.++....+ .+++++..+ .....+-++.|.++ +|.++++..|+|-
T Consensus 2 ~~~l~~~~~~L~~~~~~l~--~~i~~~~~~l~~~~~~~v~~hI~lLheY-----NeiKD~gQ~Lig~ 61 (83)
T PF07061_consen 2 IESLEAEIQELKEQIEQLE--KEISELEAELIEDPEKIVKRHIKLLHEY-----NEIKDIGQGLIGL 61 (83)
T ss_pred hhHHHHHHHHHHHHHHHHH--HHHHHHHhhcccCHHHHHHHHHHHHHHH-----hHHHHHHHHHHHH
Confidence 4566677777766555444 344444443 22333444555554 6788888888874
No 83
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=63.65 E-value=70 Score=25.06 Aligned_cols=55 Identities=11% Similarity=0.315 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhH------------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy9275 139 GMQKLNSKIKSLELQGKRLREV------------YKAAKLNNKIKSLELQGKRLREVYKAASQEFRE 193 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~------------~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFRe 193 (284)
-|+++++|-+.+-..+...... .|+..++..|..++.....+|+-|-+-|...|.
T Consensus 5 lLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~ 71 (79)
T PF08581_consen 5 LLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRR 71 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666666666665533222111 788899999999999999999999998887664
No 84
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=63.54 E-value=1.1e+02 Score=27.35 Aligned_cols=112 Identities=18% Similarity=0.236 Sum_probs=56.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccceeeeeecccCH---HHHHHH----HHHHHHHHHHH
Q psy9275 76 DRAKLEVLEKVIEGYRQRMEHIEADQGLVCVIPGQNSEKVAQQKVQELQMEADNNR---ETVKQM----AGMQKLNSKIK 148 (284)
Q Consensus 76 l~~ki~eLE~~l~~~R~~~~~~~~~l~~~~lE~~~~~g~~~~~~tkvlIL~lr~NP---~a~~~~----~~le~Lk~ENe 148 (284)
.+.=|..|+.-+..||.....++..+.+ ++..+..... .......+| .+..++ ..-+.|..-|.
T Consensus 14 qa~Lv~~LQ~KV~qYr~rc~ele~~l~~--------~~~l~~~~~~-~~~~~e~s~dLe~~l~rLeEEqqR~~~L~qvN~ 84 (182)
T PF15035_consen 14 QAQLVQRLQAKVLQYRKRCAELEQQLSA--------SQVLESPSQR-RRSEEEHSPDLEEALIRLEEEQQRSEELAQVNA 84 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc--------ccCcCccccc-ccccccCcccHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4455778888888999999998888742 1111111000 000222334 232222 13445555566
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9275 149 SLELQGKRLREVYKAAKLNNKIKSLELQGKRLREVYKAASQEFRETVYLL 198 (284)
Q Consensus 149 ~L~~~l~~~e~~~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFReav~~L 198 (284)
-|++++.... ..-..|..++..+..-..|+.+-...|-.+|+.--..+
T Consensus 85 lLReQLEq~~--~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~~~ 132 (182)
T PF15035_consen 85 LLREQLEQAR--KANEALQEDLQKLTQDWERLRDELEQKEAEWREEEENF 132 (182)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666665544 23344555555555555555555555555555444433
No 85
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=62.99 E-value=58 Score=34.99 Aligned_cols=94 Identities=13% Similarity=0.141 Sum_probs=53.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccceeeeeec-ccCH-HHHHHHHHHHHHHHHHHHHHH
Q psy9275 75 SDRAKLEVLEKVIEGYRQRMEHIEADQGLVCVIPGQNSEKVAQQKVQELQMEA-DNNR-ETVKQMAGMQKLNSKIKSLEL 152 (284)
Q Consensus 75 ~l~~ki~eLE~~l~~~R~~~~~~~~~l~~~~lE~~~~~g~~~~~~tkvlIL~l-r~NP-~a~~~~~~le~Lk~ENe~L~~ 152 (284)
.++.|+++||.++..+|.++...+.... .+|.. . ...+ ++ +.|+ +...=+..|.++|.+|.-|..
T Consensus 542 ~~r~r~~~lE~E~~~lr~elk~kee~~~--~~e~~-----~----~~lr--~~~~e~~~~~e~L~~aL~amqdk~~~LE~ 608 (697)
T PF09726_consen 542 SCRQRRRQLESELKKLRRELKQKEEQIR--ELESE-----L----QELR--KYEKESEKDTEVLMSALSAMQDKNQHLEN 608 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH-----H----HHHH--HHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999977665552 22211 1 0011 11 3333 443333467777777777766
Q ss_pred HHhhhhhH------------HHHHHHHHHHHhHHHHHHHHH
Q psy9275 153 QGKRLREV------------YKAAKLNNKIKSLELQGKRLR 181 (284)
Q Consensus 153 ~l~~~e~~------------~E~~~Lk~qi~~~eKr~~RLK 181 (284)
-|.+--.- .++..++.+|-..++.+.=||
T Consensus 609 sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk 649 (697)
T PF09726_consen 609 SLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELK 649 (697)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65542211 344444555555555554444
No 86
>PRK02224 chromosome segregation protein; Provisional
Probab=62.66 E-value=1.2e+02 Score=32.40 Aligned_cols=8 Identities=25% Similarity=0.451 Sum_probs=4.5
Q ss_pred CCeeEEEe
Q psy9275 207 NCMYKLAS 214 (284)
Q Consensus 207 ng~~rL~S 214 (284)
++.|.|+-
T Consensus 762 ~~~~~i~~ 769 (880)
T PRK02224 762 DGEYELTV 769 (880)
T ss_pred cCCcceee
Confidence 45566654
No 87
>KOG4571|consensus
Probab=62.63 E-value=28 Score=33.65 Aligned_cols=39 Identities=18% Similarity=0.283 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy9275 139 GMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRLREVYKA 186 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi~~~eKr~~RLKEVF~~ 186 (284)
+.+.|..|++.|-.+ -.+|+.++.++++.+++||+.|-.
T Consensus 249 e~E~l~ge~~~Le~r---------N~~LK~qa~~lerEI~ylKqli~e 287 (294)
T KOG4571|consen 249 EKEALLGELEGLEKR---------NEELKDQASELEREIRYLKQLILE 287 (294)
T ss_pred HHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666677777766544 337888888999999998887544
No 88
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=62.48 E-value=94 Score=31.67 Aligned_cols=57 Identities=11% Similarity=0.047 Sum_probs=38.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccceeeeeecccCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9275 75 SDRAKLEVLEKVIEGYRQRMEHIEADQGLVCVIPGQNSEKVAQQKVQELQMEADNNRETVKQMAGMQKLNSKIKSLELQG 154 (284)
Q Consensus 75 ~l~~ki~eLE~~l~~~R~~~~~~~~~l~~~~lE~~~~~g~~~~~~tkvlIL~lr~NP~a~~~~~~le~Lk~ENe~L~~~l 154 (284)
....-|..||..+...+.++..+...+. -+||....-...+.+|+++++..+.++
T Consensus 283 ~~~~lI~~Le~qLa~~~aeL~~L~~~~~-------------------------p~sPqV~~l~~rI~aLe~QIa~er~kl 337 (434)
T PRK15178 283 AIYQLIAGFETQLAEAKAEYAQLMVNGL-------------------------DQNPLIPRLSAKIKVLEKQIGEQRNRL 337 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcC-------------------------CCCCchhHHHHHHHHHHHHHHHHHHHh
Confidence 4666777788777777766665433321 356754443336899999999999998
Q ss_pred hh
Q psy9275 155 KR 156 (284)
Q Consensus 155 ~~ 156 (284)
..
T Consensus 338 ~~ 339 (434)
T PRK15178 338 SN 339 (434)
T ss_pred hc
Confidence 64
No 89
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=62.33 E-value=71 Score=32.39 Aligned_cols=107 Identities=14% Similarity=0.237 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccceeeeeeccc---CHH--H-HHHHH-HHHHHHHHHHH
Q psy9275 77 RAKLEVLEKVIEGYRQRMEHIEADQGLVCVIPGQNSEKVAQQKVQELQMEADN---NRE--T-VKQMA-GMQKLNSKIKS 149 (284)
Q Consensus 77 ~~ki~eLE~~l~~~R~~~~~~~~~l~~~~lE~~~~~g~~~~~~tkvlIL~lr~---NP~--a-~~~~~-~le~Lk~ENe~ 149 (284)
...|+.|.+.|+-+|+.-..-..+. +..+..-++++. .++. |+. + +.... -...|..+.+.
T Consensus 150 ~~Ev~~LRreLavLRQl~~~~~~~~----------~~~i~~i~~ki~--~~k~~s~~~~~~~~R~~~~~~k~~L~~~sd~ 217 (424)
T PF03915_consen 150 LKEVQSLRRELAVLRQLYSEFQSEV----------KESISSIREKIK--KVKSASTNASGDSNRAYMESGKKKLSEESDR 217 (424)
T ss_dssp --------------------------------------------------------------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHH--HHHHhhccccccchhHHHHHHHHHHHHHHHH
Confidence 4566677777777776555544443 333333344333 2222 221 1 22222 45667777777
Q ss_pred HHHHHhhhhhH------------------------HHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHH
Q psy9275 150 LELQGKRLREV------------------------YKAAKLNNKIKSLELQGKRLREVYKAA-SQEFRETV 195 (284)
Q Consensus 150 L~~~l~~~e~~------------------------~E~~~Lk~qi~~~eKr~~RLKEVF~~K-s~EFReav 195 (284)
|..++..+++. .++..+.+.+...+-.+.++|.+|++- -.|+..+|
T Consensus 218 Ll~kVdDLQD~VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkKiWE~EL~~V~ 288 (424)
T PF03915_consen 218 LLTKVDDLQDLVEDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEKPIWKKIWESELQKVC 288 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 77777666653 456666777777777777888888763 34444444
No 90
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=61.98 E-value=22 Score=26.78 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q psy9275 136 QMAGMQKLNSKIKSLELQGKRLR 158 (284)
Q Consensus 136 ~~~~le~Lk~ENe~L~~~l~~~e 158 (284)
+..+++.|+..+..|..+++.+.
T Consensus 30 Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 30 QQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 33479999999999999998876
No 91
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=61.38 E-value=1.4e+02 Score=27.88 Aligned_cols=100 Identities=15% Similarity=0.206 Sum_probs=45.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccc-ccceeeeeecccCHHHHHHHHHHHHHHHHHHHHHH
Q psy9275 74 GSDRAKLEVLEKVIEGYRQRMEHIEADQGLVCVIPGQNSEKVAQ-QKVQELQMEADNNRETVKQMAGMQKLNSKIKSLEL 152 (284)
Q Consensus 74 ~~l~~ki~eLE~~l~~~R~~~~~~~~~l~~~~lE~~~~~g~~~~-~~tkvlIL~lr~NP~a~~~~~~le~Lk~ENe~L~~ 152 (284)
+.+...+..|+..++..++++.....+. ..++++ ..|.+- -.-|.+..+.+.++..+++.+.+.+
T Consensus 138 ~~~~~~i~~l~~~~~~~~~~~~~~~~~~----------~~E~~g~~~tg~~----G~Gp~~~~~~~~~~~~~~~l~~l~~ 203 (301)
T PF14362_consen 138 ARLDAEIAALQAEIDQLEKEIDRAQQEA----------QCEIFGTGGTGVP----GKGPRYKEKRAQLDAAQAELDTLQA 203 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHhhcCCCCCCCC----CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555554444443 122222 233222 3456555544456666666666665
Q ss_pred HHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy9275 153 QGKRLREVYKAAKLNNKIKSLELQGKRLREVYKAASQEFRETV 195 (284)
Q Consensus 153 ~l~~~e~~~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFReav 195 (284)
++.... ..+...+. .+.+++.+.-.++..++...+
T Consensus 204 ~~~~~~-----~~l~~~~~---~~~~~l~~~~~~~~a~~~~~~ 238 (301)
T PF14362_consen 204 QIDAAI-----AALDAQIA---ARKARLDEARQAKVAEFQAII 238 (301)
T ss_pred hHHHHH-----HHHHhhHH---HHHHHHHHHHHHHHHHHhHhh
Confidence 533221 12221111 445555555555555554443
No 92
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=61.15 E-value=43 Score=33.97 Aligned_cols=30 Identities=17% Similarity=0.178 Sum_probs=20.4
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy9275 72 PPGSDRAKLEVLEKVIEGYRQRMEHIEADQ 101 (284)
Q Consensus 72 ~~~~l~~ki~eLE~~l~~~R~~~~~~~~~l 101 (284)
.++.++.+|++|++.++..++++..+++.+
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~ 101 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLEDRGDALKALA 101 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677777777777777777776666555
No 93
>KOG0976|consensus
Probab=60.97 E-value=1.9e+02 Score=32.19 Aligned_cols=31 Identities=13% Similarity=0.283 Sum_probs=11.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy9275 163 AAKLNNKIKSLELQGKRLREVYKAASQEFRE 193 (284)
Q Consensus 163 ~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFRe 193 (284)
+.+++.|..++-..+.|++..--.|+..|++
T Consensus 178 lt~~~~q~~tkl~e~~~en~~le~k~~k~~e 208 (1265)
T KOG0976|consen 178 LNEFNMEFQTKLAEANREKKALEEKLEKFKE 208 (1265)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333444443
No 94
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=60.96 E-value=33 Score=31.69 Aligned_cols=43 Identities=23% Similarity=0.326 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy9275 136 QMAGMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRLREVY 184 (284)
Q Consensus 136 ~~~~le~Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi~~~eKr~~RLKEVF 184 (284)
....+..+++||++|++++..++ ....++..+...++||++.-
T Consensus 67 ~~~~~~~l~~en~~L~~e~~~l~------~~~~~~~~l~~en~~L~~lL 109 (276)
T PRK13922 67 SLASLFDLREENEELKKELLELE------SRLQELEQLEAENARLRELL 109 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHh
Confidence 44578899999999997765444 33334457777888888763
No 95
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=60.80 E-value=13 Score=40.40 Aligned_cols=103 Identities=15% Similarity=0.090 Sum_probs=44.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccceeeeeecccCH--HHHHHHH-HHHHHHHHHHHHH
Q psy9275 75 SDRAKLEVLEKVIEGYRQRMEHIEADQGLVCVIPGQNSEKVAQQKVQELQMEADNNR--ETVKQMA-GMQKLNSKIKSLE 151 (284)
Q Consensus 75 ~l~~ki~eLE~~l~~~R~~~~~~~~~l~~~~lE~~~~~g~~~~~~tkvlIL~lr~NP--~a~~~~~-~le~Lk~ENe~L~ 151 (284)
.+..|.++|=+.++..++++..+-....+.--+.+.++..|+-..++|. +.+ +- .-.+..+ .|++-..||..|.
T Consensus 452 ~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik-~ev--~eal~~~k~~q~kLe~sekEN~iL~ 528 (861)
T PF15254_consen 452 LLQSKNEELLKVIENQKEENKRLRKMFQEKDQELLENKQQFDIETTRIK-IEV--EEALVNVKSLQFKLEASEKENQILG 528 (861)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HHH--HHHHHHHHHHhhhHHHHHhhhhHhh
Confidence 4555555555555555555555444332212222333334444444332 011 11 0011122 4555555555554
Q ss_pred HHHhhhhhHHHHHHHHHHHHhHHHHHHHHHH
Q psy9275 152 LQGKRLREVYKAAKLNNKIKSLELQGKRLRE 182 (284)
Q Consensus 152 ~~l~~~e~~~E~~~Lk~qi~~~eKr~~RLKE 182 (284)
--|+.- +.|+..|+.-...+..-|.||--
T Consensus 529 itlrQr--DaEi~RL~eLtR~LQ~Sma~lL~ 557 (861)
T PF15254_consen 529 ITLRQR--DAEIERLRELTRTLQNSMAKLLS 557 (861)
T ss_pred hHHHHH--HHHHHHHHHHHHHHHHHHHHHhh
Confidence 444332 24555555555555555555443
No 96
>PRK04325 hypothetical protein; Provisional
Probab=60.67 E-value=32 Score=26.39 Aligned_cols=20 Identities=15% Similarity=0.195 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q psy9275 139 GMQKLNSKIKSLELQGKRLR 158 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e 158 (284)
.++.|+..+..|..+++..+
T Consensus 38 ~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 38 TLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 68888888888888887654
No 97
>KOG1655|consensus
Probab=60.18 E-value=35 Score=31.49 Aligned_cols=107 Identities=17% Similarity=0.185 Sum_probs=61.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhccc-----ccccccccccccccccceeeeeecccCH-HH------HH-HHHHH
Q psy9275 74 GSDRAKLEVLEKVIEGYRQRMEHIEADQGL-----VCVIPGQNSEKVAQQKVQELQMEADNNR-ET------VK-QMAGM 140 (284)
Q Consensus 74 ~~l~~ki~eLE~~l~~~R~~~~~~~~~l~~-----~~lE~~~~~g~~~~~~tkvlIL~lr~NP-~a------~~-~~~~l 140 (284)
+.+..||..|+..|..|++++.....-..- .++..+..+..|...+..+. +-+-|- ++ .+ -..|+
T Consensus 29 dSve~KIskLDaeL~k~~~Qi~k~R~gpaq~~~KqrAlrVLkQKK~yE~q~d~L~--~QsfNMeQa~~t~e~LKdtq~Tv 106 (218)
T KOG1655|consen 29 DSVEKKISKLDAELCKYKDQIKKTRPGPAQNALKQRALRVLKQKKMYENQKDSLD--QQSFNMEQANFTAESLKDTQATV 106 (218)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH--HhcccHHHHHHHHHHHHHHHHHH
Confidence 358899999999999999999875322110 12233333444444333221 112243 11 12 22389
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHH
Q psy9275 141 QKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRLREV 183 (284)
Q Consensus 141 e~Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi~~~eKr~~RLKEV 183 (284)
.+++.-|..++.++.....+ .+..|+.++...=-...-+.|+
T Consensus 107 ~AmK~~~k~mK~~ykkvnId-~IedlQDem~Dlmd~a~EiQE~ 148 (218)
T KOG1655|consen 107 AAMKDTNKEMKKQYKKVNID-KIEDLQDEMEDLMDQADEIQEV 148 (218)
T ss_pred HHHHHHHHHHHHHHccCCHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888776643 4556666655544444444444
No 98
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=59.95 E-value=1.4e+02 Score=27.28 Aligned_cols=63 Identities=25% Similarity=0.295 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhH-----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhce
Q psy9275 139 GMQKLNSKIKSLELQGKRLREV-----YKAAKLNNKIKSLELQGKRLREVYKAASQEFRETVYLLFGY 201 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~-----~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFReav~~LlGY 201 (284)
..+.+...+..|..++...+.- ..+..|+.+|..++..+...|+-|..-..+.=.+...|-||
T Consensus 170 re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~l~el~~~ 237 (237)
T PF00261_consen 170 REDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQTLNELNEM 237 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 4566677777777777766654 55778888888888888888888887777665655555443
No 99
>KOG0018|consensus
Probab=59.92 E-value=1.6e+02 Score=33.50 Aligned_cols=28 Identities=14% Similarity=0.250 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhceEEEee
Q psy9275 178 KRLREVYKAASQEFRETVYLLFGYKVDRT 206 (284)
Q Consensus 178 ~RLKEVF~~Ks~EFReav~~LlGYkIdf~ 206 (284)
.++.+.|..+-.+|-..+.. ++|+|+|.
T Consensus 773 ~~~~~~~a~k~~ef~~q~~~-l~~~l~fe 800 (1141)
T KOG0018|consen 773 RELQQEFAKKRLEFENQKAK-LENQLDFE 800 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHH-Hhhhhhhe
Confidence 34589999999999887764 79999998
No 100
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=59.92 E-value=17 Score=27.23 Aligned_cols=32 Identities=6% Similarity=0.062 Sum_probs=26.9
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy9275 71 APPGSDRAKLEVLEKVIEGYRQRMEHIEADQG 102 (284)
Q Consensus 71 ~~~~~l~~ki~eLE~~l~~~R~~~~~~~~~l~ 102 (284)
+||+.|+.+|.+|+.....+..++..+..-..
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~~~~ 45 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQNAS 45 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 67889999999999888888888888776654
No 101
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=59.86 E-value=25 Score=37.90 Aligned_cols=53 Identities=25% Similarity=0.297 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhH--------HHHHHHHHHHHhHHHH---HHHHHHHHHHHHHHH
Q psy9275 139 GMQKLNSKIKSLELQGKRLREV--------YKAAKLNNKIKSLELQ---GKRLREVYKAASQEF 191 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~--------~E~~~Lk~qi~~~eKr---~~RLKEVF~~Ks~EF 191 (284)
.-.-|.+||=.|..++..+... +|+..|..++.-++-. ..|||+|--+...|=
T Consensus 98 dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qleEA 161 (717)
T PF09730_consen 98 DYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLEEA 161 (717)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666665544 4555555544443333 346666665555443
No 102
>KOG1029|consensus
Probab=59.65 E-value=2.6e+02 Score=31.18 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHhh-----ceEEEee
Q psy9275 182 EVYKAASQEFRETVYLLF-----GYKVDRT 206 (284)
Q Consensus 182 EVF~~Ks~EFReav~~Ll-----GYkIdf~ 206 (284)
++|+....|+|+.+|+.. -|++++.
T Consensus 566 di~n~qlkelk~~~~~q~lake~~yk~e~d 595 (1118)
T KOG1029|consen 566 DIFNNQLKELKEDVNSQQLAKEELYKNERD 595 (1118)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777777664 3555543
No 103
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=59.62 E-value=1.5e+02 Score=33.47 Aligned_cols=38 Identities=29% Similarity=0.492 Sum_probs=28.6
Q ss_pred HHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy9275 163 AAKLNNKIKSL-ELQGKRLREVYKAASQEFRETVYLLFG 200 (284)
Q Consensus 163 ~~~Lk~qi~~~-eKr~~RLKEVF~~Ks~EFReav~~LlG 200 (284)
...++..|... +++..|+++.|..-...|......|||
T Consensus 993 ~~~l~~~i~~~d~~~~~~f~~~f~~In~~F~~if~~L~~ 1031 (1163)
T COG1196 993 KEKLLEVIEELDKEKRERFKETFDKINENFSEIFKELFG 1031 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 44444555443 345679999999999999999999988
No 104
>KOG2751|consensus
Probab=59.56 E-value=1.9e+02 Score=29.57 Aligned_cols=93 Identities=19% Similarity=0.304 Sum_probs=53.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccceeeeeecccCH--HHHHHHHHHHHHHHHHHHHHH
Q psy9275 75 SDRAKLEVLEKVIEGYRQRMEHIEADQGLVCVIPGQNSEKVAQQKVQELQMEADNNR--ETVKQMAGMQKLNSKIKSLEL 152 (284)
Q Consensus 75 ~l~~ki~eLE~~l~~~R~~~~~~~~~l~~~~lE~~~~~g~~~~~~tkvlIL~lr~NP--~a~~~~~~le~Lk~ENe~L~~ 152 (284)
.+.+.++-+++..+.|..=++.++..- | ...+...+++.+..|+++|.+
T Consensus 147 ~ld~e~~~~~~e~~~Y~~~l~~Le~~~-----------------------------~~~~~~~~~~e~~~l~~eE~~L~q 197 (447)
T KOG2751|consen 147 KLDKEVEDAEDEVDTYKACLQRLEQQN-----------------------------QDVSEEDLLKELKNLKEEEERLLQ 197 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcC-----------------------------cccchHHHHHHHHHHHHHHHHHHH
Confidence 466666677777777776666544332 2 111223368888899999998
Q ss_pred HHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9275 153 QGKRLREVYKAAKLNNKIKSLELQGKRLREVYKAASQEFRETVYLL 198 (284)
Q Consensus 153 ~l~~~e~~~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFReav~~L 198 (284)
++..++. +-.++-.++..++-+-.|+-|-=....++|+.--+.+
T Consensus 198 ~lk~le~--~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~~~~~q~ 241 (447)
T KOG2751|consen 198 QLEELEK--EEAELDHQLKELEFKAERLNEEEDQYWREYNNFQRQL 241 (447)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8887773 3333444444444444555444444455555444443
No 105
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=59.28 E-value=47 Score=25.83 Aligned_cols=48 Identities=21% Similarity=0.269 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy9275 139 GMQKLNSKIKSLELQGKRLREV-YKAAKLNNKIKSLELQGKRLREVYKA 186 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~-~E~~~Lk~qi~~~eKr~~RLKEVF~~ 186 (284)
....|+.-.+..++.++.+... ..+.+.+.+|++++.++.+.+++.++
T Consensus 29 ~~~~lk~Klq~ar~~i~~lpgi~~s~eeq~~~i~~Le~~i~~k~~~L~~ 77 (83)
T PF07544_consen 29 ATGSLKHKLQKARAAIRELPGIDRSVEEQEEEIEELEEQIRKKREVLQK 77 (83)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888887754 56888888999999999999998554
No 106
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=59.27 E-value=94 Score=25.09 Aligned_cols=33 Identities=30% Similarity=0.484 Sum_probs=23.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy9275 163 AAKLNNKIKSLELQGKRLREVYKAASQEFRETV 195 (284)
Q Consensus 163 ~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFReav 195 (284)
+..++..|..++++...|.+-+.+.-..+++++
T Consensus 76 ~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~~ 108 (110)
T TIGR02338 76 KETLELRVKTLQRQEERLREQLKELQEKIQEAL 108 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455566777777777777777777777777665
No 107
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=59.17 E-value=22 Score=31.72 Aligned_cols=49 Identities=16% Similarity=0.317 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhH----------HHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy9275 139 GMQKLNSKIKSLELQGKRLREV----------YKAAKLNNKIKSLELQGKRLREVYKAA 187 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~----------~E~~~Lk~qi~~~eKr~~RLKEVF~~K 187 (284)
.++.+.+..++|...+....+. .|+.++-++|.++|-++.++-+++...
T Consensus 93 ~~~~l~~ri~eLe~~l~~kad~vvsYqll~hr~e~ee~~~~l~~le~~~~~~e~~~~~~ 151 (175)
T PRK13182 93 QLNTITRRLDELERQLQQKADDVVSYQLLQHRREMEEMLERLQKLEARLKKLEPIYITP 151 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 4445555555555555554443 789999999999999999987776543
No 108
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=59.04 E-value=47 Score=30.51 Aligned_cols=67 Identities=16% Similarity=0.231 Sum_probs=47.2
Q ss_pred ccCH--HHHH-----HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy9275 128 DNNR--ETVK-----QMAGMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRLREVYKAASQEFRETVYLLFG 200 (284)
Q Consensus 128 r~NP--~a~~-----~~~~le~Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFReav~~LlG 200 (284)
..+| ..|+ |...|..--.||+.|-.. +..++.+|..+...+..|+++ ..-.+-+.++|-.|+|
T Consensus 101 ~e~Pse~YWk~lAE~RR~AL~eaL~ENe~Lh~~---------ie~~~eEi~~lk~en~~L~el-ae~~~~la~~ie~l~~ 170 (200)
T PF07412_consen 101 SEGPSENYWKELAEERRKALEEALEENEKLHKE---------IEQKDEEIAKLKEENEELKEL-AEHVQYLAEVIERLTG 170 (200)
T ss_dssp SSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHCCHHH-HHHHHHHHHHHHHCC-
T ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhc
Confidence 5688 5565 222566666788887644 447778888888899999998 7778999999999998
Q ss_pred eEEE
Q psy9275 201 YKVD 204 (284)
Q Consensus 201 YkId 204 (284)
=..+
T Consensus 171 ~~~~ 174 (200)
T PF07412_consen 171 QELD 174 (200)
T ss_dssp ----
T ss_pred cCcc
Confidence 6555
No 109
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=59.00 E-value=1.6e+02 Score=29.31 Aligned_cols=28 Identities=14% Similarity=0.232 Sum_probs=17.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy9275 74 GSDRAKLEVLEKVIEGYRQRMEHIEADQ 101 (284)
Q Consensus 74 ~~l~~ki~eLE~~l~~~R~~~~~~~~~l 101 (284)
+.+..++..++..+...+.++...+..+
T Consensus 200 ~~~~~~l~~l~~~l~~~~~~l~~~~a~~ 227 (498)
T TIGR03007 200 GDYYSEISEAQEELEAARLELNEAIAQR 227 (498)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466677777766666666655554443
No 110
>KOG0245|consensus
Probab=58.71 E-value=26 Score=39.29 Aligned_cols=68 Identities=16% Similarity=0.176 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhH--------------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH------HHHHHHh
Q psy9275 139 GMQKLNSKIKSLELQGKRLREV--------------YKAAKLNNKIKSLELQGKRLREVYKAASQEF------RETVYLL 198 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~--------------~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EF------Reav~~L 198 (284)
-+..|++|+.+|+..+.....+ .++.++..++++.||-+.+|-+.|.+|..+= |++.-.=
T Consensus 362 LIRELreEv~rLksll~~~~~~~~~~~~~p~~~~~~~~~e~~~~~L~E~Ek~mael~etW~EKl~~aEair~e~~~~L~e 441 (1221)
T KOG0245|consen 362 LIRELREEVARLKSLLRAQGLGDIAVEGSPSALLSQPEIEELRERLQETEKIMAELNETWEEKLREAEAIRMEREALLAE 441 (1221)
T ss_pred HHHHHHHHHHHHHHHHhccccccccccCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 3778999999999999876654 4589999999999999999999999986542 3444444
Q ss_pred hceEEEee
Q psy9275 199 FGYKVDRT 206 (284)
Q Consensus 199 lGYkIdf~ 206 (284)
.|..+...
T Consensus 442 mGva~~~D 449 (1221)
T KOG0245|consen 442 MGVAVRED 449 (1221)
T ss_pred cCceeeec
Confidence 57666554
No 111
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=58.05 E-value=31 Score=33.38 Aligned_cols=72 Identities=21% Similarity=0.152 Sum_probs=45.3
Q ss_pred eeeccccccchhhh-----hhhHHHHHHHHhhhhhhhHHHHHHHhhcccccccCC-------CCCcchHHHHHHHHHHHH
Q psy9275 21 LVELGYLSSNRERE-----RDELLREKELKEKVDHLTYQMEWRALKGNATFSESA-------APPGSDRAKLEVLEKVIE 88 (284)
Q Consensus 21 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~e~e~~~lk~~~~~~e~~-------~~~~~l~~ki~eLE~~l~ 88 (284)
+-.+|-.+|+|... .+...-..+++.. +.|.|=++=|+|++-+-=. =.|+.|.-++++||+.+.
T Consensus 54 ~~S~~~sSSRRsS~DtSsS~dse~s~r~lk~~----l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~ 129 (302)
T PF09738_consen 54 LNSLRGSSSRRSSGDTSSSVDSEASLRDLKDS----LAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLA 129 (302)
T ss_pred hcCCCCCCCCCCCCcccccccccccHHHHHHH----HHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667677777652 2333334455332 6688888999998655411 356677777788887777
Q ss_pred HHHHHHHH
Q psy9275 89 GYRQRMEH 96 (284)
Q Consensus 89 ~~R~~~~~ 96 (284)
.++.+...
T Consensus 130 ~~~re~~e 137 (302)
T PF09738_consen 130 QLQREYRE 137 (302)
T ss_pred HHHHHHHH
Confidence 66655543
No 112
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=57.27 E-value=74 Score=31.68 Aligned_cols=71 Identities=20% Similarity=0.266 Sum_probs=38.0
Q ss_pred eeeeeeeccccccchhhhhhhHHHHHHHHhhhhhhhHHHHHHHhhcccccccCCCCCcchHHHHHHHHHHHHHHHHHHHH
Q psy9275 17 VLVILVELGYLSSNRERERDELLREKELKEKVDHLTYQMEWRALKGNATFSESAAPPGSDRAKLEVLEKVIEGYRQRMEH 96 (284)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~~~lk~~~~~~e~~~~~~~l~~ki~eLE~~l~~~R~~~~~ 96 (284)
|..|.-++|+.-+-+-|| +.||.+-.+ .|+-.++-+-.+- +.....++-|++=+-+.+++|..+..
T Consensus 45 ~f~~iss~gwff~i~~re-------~qlk~aa~~-llq~kirk~~e~~------eglr~i~es~~e~q~e~~qL~~qnqk 110 (401)
T PF06785_consen 45 VFSIISSLGWFFAIGRRE-------KQLKTAAGQ-LLQTKIRKITEKD------EGLRKIRESVEERQQESEQLQSQNQK 110 (401)
T ss_pred ehHHHHHhHHHHHhhHHH-------HHHHHHHHH-HHHHHHHHHHhcc------HHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 444556677765544333 233332221 4555555443322 33334566666666666777777777
Q ss_pred HHhhc
Q psy9275 97 IEADQ 101 (284)
Q Consensus 97 ~~~~l 101 (284)
+.+.|
T Consensus 111 L~nqL 115 (401)
T PF06785_consen 111 LKNQL 115 (401)
T ss_pred HHHHH
Confidence 77666
No 113
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=57.19 E-value=76 Score=25.36 Aligned_cols=26 Identities=23% Similarity=0.390 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy9275 76 DRAKLEVLEKVIEGYRQRMEHIEADQ 101 (284)
Q Consensus 76 l~~ki~eLE~~l~~~R~~~~~~~~~l 101 (284)
....|..||+.+..+|.+++..+..|
T Consensus 3 V~~eId~lEekl~~cr~~le~ve~rL 28 (85)
T PF15188_consen 3 VAKEIDGLEEKLAQCRRRLEAVESRL 28 (85)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999988887
No 114
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=57.14 E-value=1.1e+02 Score=33.17 Aligned_cols=42 Identities=19% Similarity=0.247 Sum_probs=28.1
Q ss_pred HHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHhhceEEEee
Q psy9275 165 KLNNKIKSLEL-QGKRLREVYKAASQEFRETVYLLFGYKVDRT 206 (284)
Q Consensus 165 ~Lk~qi~~~eK-r~~RLKEVF~~Ks~EFReav~~LlGYkIdf~ 206 (284)
.++.-|..+++ +...+.+.|..-...|.+....|||..-.+.
T Consensus 1004 ~l~~~i~~l~~~~~~~f~~~f~~~~~~f~~~~~~l~~~~~~l~ 1046 (1164)
T TIGR02169 1004 AILERIEEYEKKKREVFMEAFEAINENFNEIFAELSGGTGELI 1046 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEE
Confidence 33333443333 3455677788889999999999988876554
No 115
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=57.00 E-value=42 Score=35.36 Aligned_cols=51 Identities=20% Similarity=0.206 Sum_probs=33.3
Q ss_pred hHHHHHHHhhcccccccCC-----CCCcchHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy9275 52 TYQMEWRALKGNATFSESA-----APPGSDRAKLEVLEKVIEGYRQRMEHIEADQG 102 (284)
Q Consensus 52 ~~e~e~~~lk~~~~~~e~~-----~~~~~l~~ki~eLE~~l~~~R~~~~~~~~~l~ 102 (284)
-|..|++.|+...+.-++- .++..++.++++++.++..--+....+.++++
T Consensus 423 pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e 478 (594)
T PF05667_consen 423 PLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELE 478 (594)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777665533321 45556777777777777776666667666664
No 116
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=56.97 E-value=61 Score=28.13 Aligned_cols=60 Identities=22% Similarity=0.276 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhH---HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9275 139 GMQKLNSKIKSLELQGKRLREV---YKAAKLNNKIKSLELQGKRLREVYKAASQEFRETVYLL 198 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~---~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFReav~~L 198 (284)
+...|++|..+|++.+.+.... ..-+.++.++..+++..+.+++.-......|-..++.+
T Consensus 41 ~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~~~ 103 (161)
T PF04420_consen 41 EQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSFDKSLSKV 103 (161)
T ss_dssp HHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667888888888888776554 44556677777777777777776666555555554443
No 117
>PLN02939 transferase, transferring glycosyl groups
Probab=56.93 E-value=1.8e+02 Score=32.63 Aligned_cols=143 Identities=20% Similarity=0.183 Sum_probs=75.1
Q ss_pred HHHHhhhhhhhHHHHHHHhhcccccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccc-
Q psy9275 42 KELKEKVDHLTYQMEWRALKGNATFSESAAPPGSDRAKLEVLEKVIEGYRQRMEHIEADQGLVCVIPGQNSEKVAQQKV- 120 (284)
Q Consensus 42 ~~~~~~~~~~~~e~e~~~lk~~~~~~e~~~~~~~l~~ki~eLE~~l~~~R~~~~~~~~~l~~~~lE~~~~~g~~~~~~t- 120 (284)
.-||+.|- .|-..+.+||+.. .+++...+++-.||++-..+..-+..++..+. ..+.++....+
T Consensus 229 ~~~~~~~~--~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ 293 (977)
T PLN02939 229 DVLKEENM--LLKDDIQFLKAEL------IEVAETEERVFKLEKERSLLDASLRELESKFI-------VAQEDVSKLSPL 293 (977)
T ss_pred HHHHHHhH--HHHHHHHHHHHHH------HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH-------hhhhhhhhccch
Confidence 34455555 6666777888776 34556778888888766666666666665552 11222211111
Q ss_pred --eeeeeecccCHHH-H----HHHHHHHHHHHHHHHHHHHHhhhhhH-----------HHHHHHHHHHHhHHHHHHH---
Q psy9275 121 --QELQMEADNNRET-V----KQMAGMQKLNSKIKSLELQGKRLREV-----------YKAAKLNNKIKSLELQGKR--- 179 (284)
Q Consensus 121 --kvlIL~lr~NP~a-~----~~~~~le~Lk~ENe~L~~~l~~~e~~-----------~E~~~Lk~qi~~~eKr~~R--- 179 (284)
.++ ..=-.|-+. . ++.+.-...-.+|.+|+.++.+++.. .-+.-++.+++.++-+.++
T Consensus 294 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (977)
T PLN02939 294 QYDCW-WEKVENLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEASLKEANVSKFSSYKVELLQQKLKLLEERLQASDH 372 (977)
T ss_pred hHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHhhHH
Confidence 000 000011100 0 11112222345667777777776664 1133345555555554443
Q ss_pred ----HHHHHHHHHHHHHHHHHHhhc
Q psy9275 180 ----LREVYKAASQEFRETVYLLFG 200 (284)
Q Consensus 180 ----LKEVF~~Ks~EFReav~~LlG 200 (284)
.-++|...+.+|++....|-+
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (977)
T PLN02939 373 EIHSYIQLYQESIKEFQDTLSKLKE 397 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456788888888888777643
No 118
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=56.06 E-value=2.6e+02 Score=29.28 Aligned_cols=16 Identities=13% Similarity=0.318 Sum_probs=8.3
Q ss_pred eEEEeeCCeeEEEeecc
Q psy9275 201 YKVDRTNCMYKLASMYA 217 (284)
Q Consensus 201 YkIdf~ng~~rL~S~Ya 217 (284)
++|.+..+.|.| ++|.
T Consensus 526 ~~v~id~~~~~~-~l~~ 541 (650)
T TIGR03185 526 SRLKIDPETFAV-SLYD 541 (650)
T ss_pred eEEEEcCCceeE-EEEc
Confidence 556654345665 3454
No 119
>KOG0250|consensus
Probab=55.82 E-value=3.6e+02 Score=30.74 Aligned_cols=13 Identities=15% Similarity=0.079 Sum_probs=6.4
Q ss_pred ccccchhhhhhhH
Q psy9275 26 YLSSNRERERDEL 38 (284)
Q Consensus 26 ~~~~~~~~~~~~~ 38 (284)
+....+.+++.++
T Consensus 654 ~~~~s~d~~ie~l 666 (1074)
T KOG0250|consen 654 VDEFSFDDEIEDL 666 (1074)
T ss_pred ccchhHhHHHHHH
Confidence 3444455555554
No 120
>KOG0996|consensus
Probab=55.66 E-value=1.4e+02 Score=34.26 Aligned_cols=44 Identities=23% Similarity=0.286 Sum_probs=23.7
Q ss_pred HHHHHHHHHhHHHHHHHH-HHHH-HHHHHHHHHHHHHhhceEEEee
Q psy9275 163 AAKLNNKIKSLELQGKRL-REVY-KAASQEFRETVYLLFGYKVDRT 206 (284)
Q Consensus 163 ~~~Lk~qi~~~eKr~~RL-KEVF-~~Ks~EFReav~~LlGYkIdf~ 206 (284)
+.+++++|+.+++...-+ .+-- .+.+.+++..+-.++|-++...
T Consensus 860 l~~~~~~ie~l~kE~e~~qe~~~Kk~~i~~lq~~i~~i~~e~~q~q 905 (1293)
T KOG0996|consen 860 LKELEEQIEELKKEVEELQEKAAKKARIKELQNKIDEIGGEKVQAQ 905 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhchhhHHh
Confidence 444555555555555555 1111 2456666666666666666554
No 121
>KOG0250|consensus
Probab=55.33 E-value=46 Score=37.38 Aligned_cols=28 Identities=11% Similarity=0.281 Sum_probs=14.1
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHH
Q psy9275 71 APPGSDRAKLEVLEKVIEGYRQRMEHIE 98 (284)
Q Consensus 71 ~~~~~l~~ki~eLE~~l~~~R~~~~~~~ 98 (284)
.++++...+|+.+-..++++|.+...++
T Consensus 330 ~e~~~~d~Ei~~~r~~~~~~~re~~~~~ 357 (1074)
T KOG0250|consen 330 DEVDAQDEEIEEARKDLDDLRREVNDLK 357 (1074)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555444443
No 122
>KOG0999|consensus
Probab=54.34 E-value=92 Score=33.10 Aligned_cols=129 Identities=22% Similarity=0.274 Sum_probs=76.7
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccc------------c--ccee---eeeecccCHHH
Q psy9275 71 APPGSDRAKLEVLEKVIEGYRQRMEHIEADQGLVCVIPGQNSEKVAQ------------Q--KVQE---LQMEADNNRET 133 (284)
Q Consensus 71 ~~~~~l~~ki~eLE~~l~~~R~~~~~~~~~l~~~~lE~~~~~g~~~~------------~--~tkv---lIL~lr~NP~a 133 (284)
++...|..+.++||...|..|+++..+...+.. -.+.+..+.. + +... .|+.|- | +.
T Consensus 43 eeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q----~~s~hkk~~~~g~e~EesLLqESaakE~~yl~kI~ele-n-eL 116 (772)
T KOG0999|consen 43 EEKEDLKQQLEELEAEYDLARTELDQTKEALGQ----YRSQHKKVARDGEEREESLLQESAAKEEYYLQKILELE-N-EL 116 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhccchhhHHHHHHHHHHhHHHHHHHHHHHH-H-HH
Confidence 455578999999999999999999998887741 1111111100 0 0000 011110 0 11
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHhhhhhH-----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---HHHHHHHhhceEEE
Q psy9275 134 VKQMA-GMQKLNSKIKSLELQGKRLREV-----YKAAKLNNKIKSLELQGKRLREVYKAASQE---FRETVYLLFGYKVD 204 (284)
Q Consensus 134 ~~~~~-~le~Lk~ENe~L~~~l~~~e~~-----~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~E---FReav~~LlGYkId 204 (284)
++.+ .+..-+.||+++........+. .+--.|+.+|....-|.+||-.-|+.-=.| .-..|..|=|-+|+
T Consensus 117 -Kq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~sQVE 195 (772)
T KOG0999|consen 117 -KQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQSQVE 195 (772)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhhhhh
Confidence 1222 6666777777777665555443 334567889999999999998888764333 23456666666666
Q ss_pred ee
Q psy9275 205 RT 206 (284)
Q Consensus 205 f~ 206 (284)
|-
T Consensus 196 yE 197 (772)
T KOG0999|consen 196 YE 197 (772)
T ss_pred hh
Confidence 54
No 123
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=54.22 E-value=4.2 Score=42.98 Aligned_cols=15 Identities=27% Similarity=0.654 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH
Q psy9275 80 LEVLEKVIEGYRQRM 94 (284)
Q Consensus 80 i~eLE~~l~~~R~~~ 94 (284)
+..||..++.||..+
T Consensus 310 ~~klE~~ve~YKkKL 324 (713)
T PF05622_consen 310 ADKLENEVEKYKKKL 324 (713)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444333
No 124
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=54.00 E-value=1.3e+02 Score=32.78 Aligned_cols=62 Identities=18% Similarity=0.186 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccceeeeeecccCHHH-------H---HHH-HHHHHHH
Q psy9275 76 DRAKLEVLEKVIEGYRQRMEHIEADQGLVCVIPGQNSEKVAQQKVQELQMEADNNRET-------V---KQM-AGMQKLN 144 (284)
Q Consensus 76 l~~ki~eLE~~l~~~R~~~~~~~~~l~~~~lE~~~~~g~~~~~~tkvlIL~lr~NP~a-------~---~~~-~~le~Lk 144 (284)
-..+|+.|+-.+..-+++...++..+. + ++.||.. . .+. .....-+
T Consensus 512 ~~s~i~~l~I~lEk~rek~~kl~~ql~---------k--------------~~~~~e~~~r~~~Le~ev~~~~ee~~kaq 568 (775)
T PF10174_consen 512 KDSEIERLEIELEKKREKHEKLEKQLE---------K--------------LRANAELRDRIQQLEQEVTRYREESEKAQ 568 (775)
T ss_pred hhhHHHHHHHHHHHhhhHHHHHHHHHH---------H--------------HHhCHhhcchHHHHHHHHHHHHHHHHHHH
Confidence 466788888888888888888877774 1 2333311 1 122 2677889
Q ss_pred HHHHHHHHHHhhhhhH
Q psy9275 145 SKIKSLELQGKRLREV 160 (284)
Q Consensus 145 ~ENe~L~~~l~~~e~~ 160 (284)
.|.++|+..|+..+..
T Consensus 569 ~EVERLl~~L~~~E~E 584 (775)
T PF10174_consen 569 AEVERLLDILREAENE 584 (775)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999888743
No 125
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=53.90 E-value=1.6e+02 Score=30.47 Aligned_cols=31 Identities=19% Similarity=0.267 Sum_probs=16.6
Q ss_pred CCCcc---hHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy9275 71 APPGS---DRAKLEVLEKVIEGYRQRMEHIEADQ 101 (284)
Q Consensus 71 ~~~~~---l~~ki~eLE~~l~~~R~~~~~~~~~l 101 (284)
+|.++ +-.++.++++.++.+..+++.+.++.
T Consensus 56 TP~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN 89 (472)
T TIGR03752 56 TPADTLRTLVAEVKELRKRLAKLISENEALKAEN 89 (472)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45554 55555666655555555555544444
No 126
>PRK02793 phi X174 lysis protein; Provisional
Probab=53.90 E-value=48 Score=25.33 Aligned_cols=22 Identities=23% Similarity=0.218 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh
Q psy9275 138 AGMQKLNSKIKSLELQGKRLRE 159 (284)
Q Consensus 138 ~~le~Lk~ENe~L~~~l~~~e~ 159 (284)
..++.|+.++..|..+++..+.
T Consensus 36 ~~I~~L~~~l~~L~~rl~~~~~ 57 (72)
T PRK02793 36 MEMAKLRDHLRLLTEKLKASQP 57 (72)
T ss_pred HHHHHHHHHHHHHHHHHHhhcc
Confidence 3688899999999888877654
No 127
>PRK04406 hypothetical protein; Provisional
Probab=52.78 E-value=67 Score=24.82 Aligned_cols=22 Identities=14% Similarity=0.125 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q psy9275 137 MAGMQKLNSKIKSLELQGKRLR 158 (284)
Q Consensus 137 ~~~le~Lk~ENe~L~~~l~~~e 158 (284)
...++.|+.++..|..+++..+
T Consensus 38 q~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 38 QLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 3378999999999988887665
No 128
>KOG3433|consensus
Probab=52.43 E-value=1.2e+02 Score=27.73 Aligned_cols=105 Identities=14% Similarity=0.186 Sum_probs=67.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccceeeeeecccCH--HHH-HHHH-HHHHHHHHHHH
Q psy9275 74 GSDRAKLEVLEKVIEGYRQRMEHIEADQGLVCVIPGQNSEKVAQQKVQELQMEADNNR--ETV-KQMA-GMQKLNSKIKS 149 (284)
Q Consensus 74 ~~l~~ki~eLE~~l~~~R~~~~~~~~~l~~~~lE~~~~~g~~~~~~tkvlIL~lr~NP--~a~-~~~~-~le~Lk~ENe~ 149 (284)
-..+.+.++||+.+++.++....+..-.+ ... +.+- +-+ +++. .+..|+.+.+.
T Consensus 77 ~~~ks~~qeLe~~L~~~~qk~~tl~e~~e-----n~K-----------------~~~e~tEer~~el~kklnslkk~~e~ 134 (203)
T KOG3433|consen 77 CDRKSVLQELESQLATGSQKKATLGESIE-----NRK-----------------AGREETEERTDELTKKLNSLKKILES 134 (203)
T ss_pred HHHHHHHHHHHHHHHHhhhhHhHHHHHHH-----HHH-----------------hhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 35778889999999998888877654332 110 1111 111 1343 67888888888
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhceE
Q psy9275 150 LELQGKRLREVYKAAKLNNKIKSLELQGKRLREVYKAASQEFRETVYLLFGYK 202 (284)
Q Consensus 150 L~~~l~~~e~~~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFReav~~LlGYk 202 (284)
++..+.+.+.. -.+....+-..+|.+.---.-|...|--..+.||.=||+.
T Consensus 135 lr~el~k~~e~--dpqv~~k~~~~~K~~~eaanrwtDnI~il~dy~~rkf~~e 185 (203)
T KOG3433|consen 135 LRWELAKIQET--DPQVFEKKVHLEKTMAEAANRWTDNIFILIDYLYRKFGLE 185 (203)
T ss_pred HHHHHHHHhhc--CHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhcCCC
Confidence 88888777653 1122333444555555555567888888889999888874
No 129
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=52.23 E-value=47 Score=32.17 Aligned_cols=47 Identities=21% Similarity=0.338 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhH---HHHHHHHHHH--HhHHHHHHHHHHHHHH
Q psy9275 140 MQKLNSKIKSLELQGKRLREV---YKAAKLNNKI--KSLELQGKRLREVYKA 186 (284)
Q Consensus 140 le~Lk~ENe~L~~~l~~~e~~---~E~~~Lk~qi--~~~eKr~~RLKEVF~~ 186 (284)
|.--..|+++|+.+|.++.++ .|....++|+ +++.|.++.||+|.-.
T Consensus 84 l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieT 135 (305)
T PF15290_consen 84 LHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIET 135 (305)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333456899999999999888 6788888874 7788889999998654
No 130
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=52.18 E-value=1.9e+02 Score=30.27 Aligned_cols=26 Identities=12% Similarity=0.327 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy9275 76 DRAKLEVLEKVIEGYRQRMEHIEADQ 101 (284)
Q Consensus 76 l~~ki~eLE~~l~~~R~~~~~~~~~l 101 (284)
|...|+.-|+.|..+|+....+++.+
T Consensus 335 l~~eie~kEeei~~L~~~~d~L~~q~ 360 (622)
T COG5185 335 LKSEIELKEEEIKALQSNIDELHKQL 360 (622)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 44444444444444444444444444
No 131
>PRK00736 hypothetical protein; Provisional
Probab=52.10 E-value=55 Score=24.71 Aligned_cols=20 Identities=15% Similarity=0.235 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q psy9275 139 GMQKLNSKIKSLELQGKRLR 158 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e 158 (284)
.++.|+..+..|..+++..+
T Consensus 34 ~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 34 TVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 68888888888888887654
No 132
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=52.05 E-value=2.7e+02 Score=28.12 Aligned_cols=13 Identities=15% Similarity=0.074 Sum_probs=7.6
Q ss_pred hHHHHHHHhhccc
Q psy9275 52 TYQMEWRALKGNA 64 (284)
Q Consensus 52 ~~e~e~~~lk~~~ 64 (284)
.|+.++..||.+.
T Consensus 230 ~L~~~~e~Lk~~~ 242 (395)
T PF10267_consen 230 RLEESIEKLKEQY 242 (395)
T ss_pred HHHHHHHHHHHHH
Confidence 5666666666543
No 133
>PRK00295 hypothetical protein; Provisional
Probab=51.62 E-value=57 Score=24.61 Aligned_cols=21 Identities=10% Similarity=0.199 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q psy9275 138 AGMQKLNSKIKSLELQGKRLR 158 (284)
Q Consensus 138 ~~le~Lk~ENe~L~~~l~~~e 158 (284)
..++.|+..+..|..++...+
T Consensus 33 ~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 33 RVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 368888888888888877654
No 134
>KOG0243|consensus
Probab=51.58 E-value=1.3e+02 Score=33.96 Aligned_cols=30 Identities=13% Similarity=0.212 Sum_probs=24.9
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy9275 72 PPGSDRAKLEVLEKVIEGYRQRMEHIEADQ 101 (284)
Q Consensus 72 ~~~~l~~ki~eLE~~l~~~R~~~~~~~~~l 101 (284)
+......+|++||..++.++.++..+...+
T Consensus 442 e~~~~~~~ieele~el~~~~~~l~~~~e~~ 471 (1041)
T KOG0243|consen 442 EKKEMAEQIEELEEELENLEKQLKDLTELY 471 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455788899999999999999998877665
No 135
>PF12178 INCENP_N: Chromosome passenger complex (CPC) protein INCENP N terminal; InterPro: IPR022006 This domain family is found in eukaryotes, and is approximately 40 amino acids in length. INCENP is a regulatory protein in the chromosome passenger complex. It is involved in regulation of the catalytic protein Aurora B. It performs this function in association with two other proteins - Survivin and Borealin. These proteins form a tight three-helical bundle. The N-terminal domain is the domain involved in formation of this three helical bundle. ; PDB: 2QFA_C.
Probab=51.38 E-value=15 Score=25.33 Aligned_cols=20 Identities=35% Similarity=0.265 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy9275 177 GKRLREVYKAASQEFRETVY 196 (284)
Q Consensus 177 ~~RLKEVF~~Ks~EFReav~ 196 (284)
.+||.++|..|+++|...|-
T Consensus 4 ~~~L~e~~~~Kl~efl~~vd 23 (38)
T PF12178_consen 4 PQHLLEVCDQKLQEFLCNVD 23 (38)
T ss_dssp GGGHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcc
Confidence 36899999999999987664
No 136
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=51.07 E-value=60 Score=24.70 Aligned_cols=41 Identities=27% Similarity=0.249 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHH----HHHHHH
Q psy9275 139 GMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLEL----QGKRLR 181 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi~~~eK----r~~RLK 181 (284)
-.+.|+.||..|++++.... .|-..|..+.+.+.. -+.|||
T Consensus 15 ~~~~L~~EN~~Lr~q~~~~~--~ER~~L~ekne~Ar~rvEamI~RLk 59 (65)
T TIGR02449 15 YLERLKSENRLLRAQEKTWR--EERAQLLEKNEQARQKVEAMITRLK 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 57789999999999988776 455556555544443 445555
No 137
>KOG0996|consensus
Probab=50.55 E-value=2e+02 Score=33.06 Aligned_cols=8 Identities=38% Similarity=0.422 Sum_probs=5.4
Q ss_pred chhhhHHh
Q psy9275 258 IPMLLSAL 265 (284)
Q Consensus 258 IPaFLAAL 265 (284)
=|||-.||
T Consensus 708 r~aFYfaL 715 (1293)
T KOG0996|consen 708 RPAFYFAL 715 (1293)
T ss_pred HHHHHHHH
Confidence 47777765
No 138
>PRK02119 hypothetical protein; Provisional
Probab=50.42 E-value=71 Score=24.47 Aligned_cols=22 Identities=9% Similarity=0.179 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q psy9275 137 MAGMQKLNSKIKSLELQGKRLR 158 (284)
Q Consensus 137 ~~~le~Lk~ENe~L~~~l~~~e 158 (284)
...++.|+.++..|..+++..+
T Consensus 36 q~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 36 QFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 3378999999999988887765
No 139
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=49.38 E-value=1e+02 Score=22.67 Aligned_cols=60 Identities=25% Similarity=0.409 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccceeeeeecccCH-HHHH-HHHHHHHHHHHHHHHHHHHh
Q psy9275 78 AKLEVLEKVIEGYRQRMEHIEADQGLVCVIPGQNSEKVAQQKVQELQMEADNNR-ETVK-QMAGMQKLNSKIKSLELQGK 155 (284)
Q Consensus 78 ~ki~eLE~~l~~~R~~~~~~~~~l~~~~lE~~~~~g~~~~~~tkvlIL~lr~NP-~a~~-~~~~le~Lk~ENe~L~~~l~ 155 (284)
+-+..|+..++.+...++.+...|+ ...|.. .=| +.+. ....++.++.+.+.|...|.
T Consensus 4 ~E~~rL~Kel~kl~~~i~~~~~kL~---------n~~F~~-----------kAP~eVve~er~kl~~~~~~~~~l~~~l~ 63 (66)
T PF10458_consen 4 AEIERLEKELEKLEKEIERLEKKLS---------NENFVE-----------KAPEEVVEKEREKLEELEEELEKLEEALE 63 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC---------STTHHH-----------HS-CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc---------Cccccc-----------cCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666666666663 122111 113 2222 33367777777777777665
Q ss_pred hh
Q psy9275 156 RL 157 (284)
Q Consensus 156 ~~ 157 (284)
.+
T Consensus 64 ~L 65 (66)
T PF10458_consen 64 QL 65 (66)
T ss_dssp H-
T ss_pred hc
Confidence 43
No 140
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=49.29 E-value=93 Score=27.33 Aligned_cols=55 Identities=24% Similarity=0.390 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy9275 139 GMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRLREVYKAASQEFRETV 195 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFReav 195 (284)
.++.|+++|..|..++....+ ....+..+-.++.+...++.+-.++-+....+.|
T Consensus 97 ~v~~Le~e~r~L~~~~~~~~~--q~~rlee~e~~l~~e~~~l~er~~e~l~~~~e~v 151 (158)
T PF09744_consen 97 QVEQLEEENRQLELKLKNLSD--QSSRLEEREAELKKEYNRLHERERELLRKLKEHV 151 (158)
T ss_pred HHHHHHHHHHHHHHHhhhhhh--hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666655544331 1223333333344444555555554444444444
No 141
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=49.20 E-value=1.2e+02 Score=27.62 Aligned_cols=42 Identities=21% Similarity=0.221 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHH
Q psy9275 139 GMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRLRE 182 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi~~~eKr~~RLKE 182 (284)
.-..+.+||..|+..|..+- .+...|++....+++..+.|+.
T Consensus 157 ~~~~i~~EN~~L~k~L~~l~--~e~~~L~~~~~~Le~qk~~L~~ 198 (206)
T PF14988_consen 157 FTRSIKRENQQLRKELLQLI--QEAQKLEARKSQLEKQKQQLQQ 198 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 55678899999988877655 6777788888888888887765
No 142
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=49.17 E-value=2e+02 Score=25.90 Aligned_cols=51 Identities=16% Similarity=0.160 Sum_probs=28.1
Q ss_pred HHHHHhhhhhhhHHHHHHHhhcccccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy9275 41 EKELKEKVDHLTYQMEWRALKGNATFSESAAPPGSDRAKLEVLEKVIEGYRQRMEHIEADQ 101 (284)
Q Consensus 41 ~~~~~~~~~~~~~e~e~~~lk~~~~~~e~~~~~~~l~~ki~eLE~~l~~~R~~~~~~~~~l 101 (284)
++.||-..-+.-|+. |+.||.+. +.++.+.+..++.+.+...++..+..-|
T Consensus 14 iK~YYndIT~~NL~l-IksLKeei---------~emkk~e~~~~k~m~ei~~eN~~L~epL 64 (201)
T PF13851_consen 14 IKNYYNDITLNNLEL-IKSLKEEI---------AEMKKKEERNEKLMAEISQENKRLSEPL 64 (201)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 566665554442222 56666654 3456666666666666666655544444
No 143
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=48.99 E-value=1.9e+02 Score=26.10 Aligned_cols=37 Identities=19% Similarity=0.097 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9275 161 YKAAKLNNKIKSLELQGKRLREVYKAASQEFRETVYL 197 (284)
Q Consensus 161 ~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFReav~~ 197 (284)
..+..|..+++-.++-..|--.....|+.+-...|..
T Consensus 139 ~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~ 175 (194)
T PF15619_consen 139 KKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKS 175 (194)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666666666666666666655544
No 144
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=48.63 E-value=1.6e+02 Score=29.47 Aligned_cols=113 Identities=19% Similarity=0.190 Sum_probs=60.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccceeeeeecccCHHH------HHHHH-HHHHHHHH
Q psy9275 74 GSDRAKLEVLEKVIEGYRQRMEHIEADQGLVCVIPGQNSEKVAQQKVQELQMEADNNRET------VKQMA-GMQKLNSK 146 (284)
Q Consensus 74 ~~l~~ki~eLE~~l~~~R~~~~~~~~~l~~~~lE~~~~~g~~~~~~tkvlIL~lr~NP~a------~~~~~-~le~Lk~E 146 (284)
..+..||.++-+.=+++|+--+.++.... |..+++-.-.+...+. +|.++ .+ .++++ .+..+++|
T Consensus 71 ~llq~kirk~~e~~eglr~i~es~~e~q~----e~~qL~~qnqkL~nqL--~~~~~--vf~k~k~~~q~LE~li~~~~EE 142 (401)
T PF06785_consen 71 QLLQTKIRKITEKDEGLRKIRESVEERQQ----ESEQLQSQNQKLKNQL--FHVRE--VFMKTKGDIQHLEGLIRHLREE 142 (401)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHH----HHHHHHHhHHHHHHHH--HHHHH--HHHHhcchHHHHHHHHHHHHHH
Confidence 35778888887777777776666554432 1111111111111111 13232 11 12455 78889999
Q ss_pred HHHHHHHHhhhhhH-----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy9275 147 IKSLELQGKRLREV-----YKAAKLNNKIKSLELQGKRLREVYKAASQEFRET 194 (284)
Q Consensus 147 Ne~L~~~l~~~e~~-----~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFRea 194 (284)
|..|..+|...... .|...|..+++++-...+-|-+-|+....+=+..
T Consensus 143 n~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq~~m 195 (401)
T PF06785_consen 143 NQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQATFVEQHSM 195 (401)
T ss_pred HHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhh
Confidence 99999998876543 2344455555555555555555555544444433
No 145
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=47.60 E-value=1.3e+02 Score=26.04 Aligned_cols=57 Identities=25% Similarity=0.285 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhH-----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy9275 139 GMQKLNSKIKSLELQGKRLREV-----YKAAKLNNKIKSLELQGKRLREVYKAASQEFRETV 195 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~-----~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFReav 195 (284)
.+..|.+|..++..++...... ......+....+.+.+.+.+.+.|.....+|++.-
T Consensus 89 ~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 89 QLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555544444432 22333445566667777777777777777766654
No 146
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=47.50 E-value=17 Score=22.41 Aligned_cols=19 Identities=16% Similarity=0.195 Sum_probs=13.2
Q ss_pred CCcchHHHHHHHHHHHHHH
Q psy9275 72 PPGSDRAKLEVLEKVIEGY 90 (284)
Q Consensus 72 ~~~~l~~ki~eLE~~l~~~ 90 (284)
+++.++.||..||+.|+.-
T Consensus 2 E~~rlr~rI~dLer~L~~C 20 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLSEC 20 (23)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4556778888888776654
No 147
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=47.36 E-value=1.7e+02 Score=24.48 Aligned_cols=54 Identities=20% Similarity=0.206 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy9275 139 GMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRLREVYKAASQEFRET 194 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFRea 194 (284)
.++.+..+|..|-...-..+ .++..++.++...-.....|++-|..+-+..-.+
T Consensus 35 ~~~~l~~~n~~lAe~nL~~~--~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l 88 (150)
T PF07200_consen 35 EREELLAENEELAEQNLSLE--PELEELRSQLQELYEELKELESEYQEKEQQQDEL 88 (150)
T ss_dssp HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67778888888877654444 5677778888777777788888888877776665
No 148
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=47.29 E-value=1.2e+02 Score=32.76 Aligned_cols=120 Identities=13% Similarity=0.139 Sum_probs=69.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhccccc--ccccc---------cccccccccceeeeeecccCH---HHHHHHHHH
Q psy9275 75 SDRAKLEVLEKVIEGYRQRMEHIEADQGLVC--VIPGQ---------NSEKVAQQKVQELQMEADNNR---ETVKQMAGM 140 (284)
Q Consensus 75 ~l~~ki~eLE~~l~~~R~~~~~~~~~l~~~~--lE~~~---------~~g~~~~~~tkvlIL~lr~NP---~a~~~~~~l 140 (284)
.+...|+.||+.=..+|+.++.+..++.... ++..- ..+.+.....++.||.=.-|- .......-+
T Consensus 531 ~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k~lenk~~~LrKqvEnk~K~i 610 (786)
T PF05483_consen 531 KMLKQIENLEETNTQLRNELESVKEELKQKGEEVKCKLDKSEENARSIECEILKKEKQMKILENKCNNLRKQVENKNKNI 610 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4778899999988888888887776663100 00000 011111122222211111111 111222368
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9275 141 QKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRLREVYKAASQEFRETVY 196 (284)
Q Consensus 141 e~Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFReav~ 196 (284)
+.|+.||+.|..++.+-. .....+.-+|..++..++.++.-|..-.+.|+.-+-
T Consensus 611 eeLqqeNk~LKKk~~aE~--kq~~~~eikVn~L~~E~e~~kk~~eE~~~~~~keie 664 (786)
T PF05483_consen 611 EELQQENKALKKKITAES--KQSNVYEIKVNKLQEELENLKKKHEEETDKYQKEIE 664 (786)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 889999999998876533 445566667777777777777777777777665443
No 149
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=46.62 E-value=53 Score=34.01 Aligned_cols=33 Identities=21% Similarity=0.128 Sum_probs=21.4
Q ss_pred hhhhhhHHHHHHHHhhhhhhhHHHHHHHhhccc
Q psy9275 32 ERERDELLREKELKEKVDHLTYQMEWRALKGNA 64 (284)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~e~e~~~lk~~~ 64 (284)
++-.+....+..-|......-+..|+.-+|++.
T Consensus 21 k~~~k~i~~Le~~k~~l~~~pv~~el~kvk~l~ 53 (560)
T PF06160_consen 21 KRYYKEIDELEERKNELMNLPVADELSKVKKLN 53 (560)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcc
Confidence 344455555666666666667777888887763
No 150
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=46.39 E-value=2.1e+02 Score=27.38 Aligned_cols=19 Identities=16% Similarity=0.197 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q psy9275 139 GMQKLNSKIKSLELQGKRL 157 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~ 157 (284)
.+..|+.+...+..++..+
T Consensus 215 ~i~~L~~~l~~~~~~l~~l 233 (362)
T TIGR01010 215 LISTLEGELIRVQAQLAQL 233 (362)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555544
No 151
>KOG1029|consensus
Probab=46.28 E-value=2.3e+02 Score=31.56 Aligned_cols=17 Identities=12% Similarity=0.051 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy9275 139 GMQKLNSKIKSLELQGK 155 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~ 155 (284)
+|+++..+-+.++++|+
T Consensus 532 ~L~aa~~~ke~irq~ik 548 (1118)
T KOG1029|consen 532 ELEAARRKKELIRQAIK 548 (1118)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444443
No 152
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=46.26 E-value=1.6e+02 Score=29.95 Aligned_cols=43 Identities=12% Similarity=0.116 Sum_probs=22.9
Q ss_pred hHHHHHHHhhcccccccC-----CCCCcchHHHHHHHHHHHHHHHHHH
Q psy9275 52 TYQMEWRALKGNATFSES-----AAPPGSDRAKLEVLEKVIEGYRQRM 94 (284)
Q Consensus 52 ~~e~e~~~lk~~~~~~e~-----~~~~~~l~~ki~eLE~~l~~~R~~~ 94 (284)
.|+.+|+.++...++.+. ......+.++|..++..+..++.+-
T Consensus 63 kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 63 KLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 667777766666544431 1334445555555555555544433
No 153
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=46.10 E-value=58 Score=33.43 Aligned_cols=105 Identities=15% Similarity=0.188 Sum_probs=48.9
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccceeeeeec-----ccCHHHHHHHH-HHHHHHH
Q psy9275 72 PPGSDRAKLEVLEKVIEGYRQRMEHIEADQGLVCVIPGQNSEKVAQQKVQELQMEA-----DNNRETVKQMA-GMQKLNS 145 (284)
Q Consensus 72 ~~~~l~~ki~eLE~~l~~~R~~~~~~~~~l~~~~lE~~~~~g~~~~~~tkvlIL~l-----r~NP~a~~~~~-~le~Lk~ 145 (284)
+...+...++.|...|...+..+..+.....+.......+.++.+..+.++-.++- +..| ..+. .|+.+..
T Consensus 303 E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~---~~l~~~Lqql~~ 379 (522)
T PF05701_consen 303 EASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAM---SELPKALQQLSS 379 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhH---HHHHHHHHHHHH
Confidence 44456666666666666666666666555543333333334444433332210000 1111 1111 4444444
Q ss_pred HHHHHHHHHhhhhhH-----HHHHHHHHHHHhHHHHHHH
Q psy9275 146 KIKSLELQGKRLREV-----YKAAKLNNKIKSLELQGKR 179 (284)
Q Consensus 146 ENe~L~~~l~~~e~~-----~E~~~Lk~qi~~~eKr~~R 179 (284)
|-+..+......... .++...+..+..++.|++=
T Consensus 380 Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~a 418 (522)
T PF05701_consen 380 EAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEA 418 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444333322211 4566666677777776653
No 154
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=46.08 E-value=1.4e+02 Score=23.35 Aligned_cols=52 Identities=10% Similarity=0.055 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhH------------HHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy9275 136 QMAGMQKLNSKIKSLELQGKRLREV------------YKAAKLNNKIKSLELQGKRLREVYKAA 187 (284)
Q Consensus 136 ~~~~le~Lk~ENe~L~~~l~~~e~~------------~E~~~Lk~qi~~~eKr~~RLKEVF~~K 187 (284)
|..++..|.+.|+.|..-..-...- .-+.+++..++...+|+..||..+..+
T Consensus 20 Q~~~l~~ln~tn~~L~~~n~~s~~rl~~~~~~f~~~~~~l~~mK~DLd~i~krir~lk~kl~~~ 83 (88)
T PF10241_consen 20 QAQTLGRLNKTNEELLNLNDLSQQRLAEARERFARHTKLLKEMKKDLDYIFKRIRSLKAKLAKQ 83 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4457888888888887554433322 347788899999999999999877653
No 155
>KOG0161|consensus
Probab=45.81 E-value=90 Score=37.46 Aligned_cols=97 Identities=19% Similarity=0.223 Sum_probs=55.2
Q ss_pred hHHHHHHHhhcccccccCCC------CCcchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccceeeee
Q psy9275 52 TYQMEWRALKGNATFSESAA------PPGSDRAKLEVLEKVIEGYRQRMEHIEADQGLVCVIPGQNSEKVAQQKVQELQM 125 (284)
Q Consensus 52 ~~e~e~~~lk~~~~~~e~~~------~~~~l~~ki~eLE~~l~~~R~~~~~~~~~l~~~~lE~~~~~g~~~~~~tkvlIL 125 (284)
.||..++.|+.+..-+++++ -++++..||.+||..+++...+-....+.+- ..| ..+..-..
T Consensus 1776 ~LE~~~kdLq~rL~e~E~~a~~~~k~~i~~Learir~LE~~l~~E~~~~~e~~k~~r--k~e-----r~vkEl~~----- 1843 (1930)
T KOG0161|consen 1776 SLERQVKDLQLRLDEAEQAALKGGKKQIAKLEARIRELESELEGEQRRKAEAIKGLR--KKE-----RRVKELQF----- 1843 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHhHhhhhhHHHhHHHH--HHH-----HHHHHHHH-----
Confidence 77888888888766666541 2446888888888888777666554333331 000 00111111
Q ss_pred ecccCHHHHHHHH-HHHHHHHHHHHHHHHHhhhhhH
Q psy9275 126 EADNNRETVKQMA-GMQKLNSKIKSLELQGKRLREV 160 (284)
Q Consensus 126 ~lr~NP~a~~~~~-~le~Lk~ENe~L~~~l~~~e~~ 160 (284)
+...-|-.+.+.+ .++.|++-+..++.++...+..
T Consensus 1844 q~eed~k~~~~~q~~~dkl~~k~~~~krQleeaE~~ 1879 (1930)
T KOG0161|consen 1844 QVEEDKKNIERLQDLVDKLQAKIKQYKRQLEEAEEE 1879 (1930)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 1122232233443 6778888888888777776653
No 156
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=45.61 E-value=1.1e+02 Score=29.10 Aligned_cols=20 Identities=25% Similarity=0.278 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q psy9275 139 GMQKLNSKIKSLELQGKRLR 158 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e 158 (284)
.+..|+.||..|-+.++.+.
T Consensus 171 rlk~le~E~s~LeE~~~~l~ 190 (290)
T COG4026 171 RLKRLEVENSRLEEMLKKLP 190 (290)
T ss_pred HHHHHHHHHHHHHHHHHhch
Confidence 35556666666665555444
No 157
>KOG4674|consensus
Probab=45.54 E-value=3.5e+02 Score=32.57 Aligned_cols=59 Identities=25% Similarity=0.338 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhH---------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9275 139 GMQKLNSKIKSLELQGKRLREV---------YKAAKLNNKIKSLELQGKRLREVYKAASQEFRETVYL 197 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~---------~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFReav~~ 197 (284)
+.+.|-+|-.+|...+..++.. .....++.+|.+++--.++||.-+..++.+||+....
T Consensus 767 e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~ 834 (1822)
T KOG4674|consen 767 ELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLKKKLQEKSSDLRELTNS 834 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5555555555555555554443 3355667789999999999999999999999987654
No 158
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.03 E-value=1.4e+02 Score=28.55 Aligned_cols=28 Identities=21% Similarity=0.202 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy9275 161 YKAAKLNNKIKSLELQGKRLREVYKAAS 188 (284)
Q Consensus 161 ~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks 188 (284)
.++..++.+|+.++.++.-..++|.+..
T Consensus 80 ~eik~l~~eI~~~~~~I~~r~~~l~~ra 107 (265)
T COG3883 80 AEIKKLQKEIAELKENIVERQELLKKRA 107 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777777777777777743
No 159
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=44.87 E-value=2.3e+02 Score=25.32 Aligned_cols=22 Identities=9% Similarity=0.166 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhH
Q psy9275 139 GMQKLNSKIKSLELQGKRLREV 160 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~ 160 (284)
.+..|+.||..|+.-+...+.+
T Consensus 71 qi~~Lq~EN~eL~~~leEhq~a 92 (181)
T PF05769_consen 71 QIRQLQQENRELRQSLEEHQSA 92 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999988887765
No 160
>PRK02224 chromosome segregation protein; Provisional
Probab=44.32 E-value=4.3e+02 Score=28.35 Aligned_cols=16 Identities=19% Similarity=0.297 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q psy9275 139 GMQKLNSKIKSLELQG 154 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l 154 (284)
++..|+.+.+.+..++
T Consensus 385 ~l~~l~~el~el~~~l 400 (880)
T PRK02224 385 EIEELEEEIEELRERF 400 (880)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444443
No 161
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=44.29 E-value=1.6e+02 Score=31.14 Aligned_cols=15 Identities=13% Similarity=0.375 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q psy9275 82 VLEKVIEGYRQRMEH 96 (284)
Q Consensus 82 eLE~~l~~~R~~~~~ 96 (284)
+|++.++..+.+++.
T Consensus 332 ~l~~~l~~l~~~i~~ 346 (594)
T PF05667_consen 332 ELQEQLDELESQIEE 346 (594)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 162
>PHA00728 hypothetical protein
Probab=44.18 E-value=23 Score=30.41 Aligned_cols=24 Identities=13% Similarity=0.259 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhH
Q psy9275 137 MAGMQKLNSKIKSLELQGKRLREV 160 (284)
Q Consensus 137 ~~~le~Lk~ENe~L~~~l~~~e~~ 160 (284)
..+++.|+.||+.|+.++..++.-
T Consensus 4 ~teveql~keneelkkkla~leal 27 (151)
T PHA00728 4 LTEVEQLKKENEELKKKLAELEAL 27 (151)
T ss_pred hhHHHHHHHhHHHHHHHHHHHHHH
Confidence 347999999999999998877753
No 163
>KOG0933|consensus
Probab=43.94 E-value=5e+02 Score=29.69 Aligned_cols=52 Identities=13% Similarity=0.142 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy9275 138 AGMQKLNSKIKSLELQGKRLREV-YKAAKLNNKIKSLELQGKRLREVYKAASQ 189 (284)
Q Consensus 138 ~~le~Lk~ENe~L~~~l~~~e~~-~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~ 189 (284)
..+++++.|++.|+.+++.+... .....|+.....+.....|||.....-..
T Consensus 448 ~~ld~~q~eve~l~~~l~~l~~~~~~~e~l~q~~~~l~~~~~~lk~~~~~l~a 500 (1174)
T KOG0933|consen 448 EELDALQNEVEKLKKRLQSLGYKIGQEEALKQRRAKLHEDIGRLKDELDRLLA 500 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47999999999999999988754 33556666667777777777776655443
No 164
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=43.67 E-value=1.9e+02 Score=26.53 Aligned_cols=34 Identities=18% Similarity=0.328 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHhhceEEEee-CCeeE
Q psy9275 175 LQGKRLREVYKA----ASQEFRETVYLLFGYKVDRT-NCMYK 211 (284)
Q Consensus 175 Kr~~RLKEVF~~----Ks~EFReav~~LlGYkIdf~-ng~~r 211 (284)
+|..+|+++-.. -+..||.++.. |.|++. ++.+-
T Consensus 131 ~Rl~~L~~~l~~~dv~~~ek~r~vlea---~~~E~~yg~~i~ 169 (251)
T PF11932_consen 131 ERLARLRAMLDDADVSLAEKFRRVLEA---YQIEMEYGRTIE 169 (251)
T ss_pred HHHHHHHHhhhccCCCHHHHHHHHHHH---HHHHHHhCCcee
Confidence 444455555433 23446655443 445655 55544
No 165
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=43.55 E-value=3.9e+02 Score=30.96 Aligned_cols=74 Identities=8% Similarity=0.078 Sum_probs=38.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccceeeeeecccCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9275 75 SDRAKLEVLEKVIEGYRQRMEHIEADQGLVCVIPGQNSEKVAQQKVQELQMEADNNRETVKQMAGMQKLNSKIKSLELQG 154 (284)
Q Consensus 75 ~l~~ki~eLE~~l~~~R~~~~~~~~~l~~~~lE~~~~~g~~~~~~tkvlIL~lr~NP~a~~~~~~le~Lk~ENe~L~~~l 154 (284)
.+..++..++..++..+.++..++..+. .+.++....++++. .|+.+|.+..+. +++.|+.+.+.+...+
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~le~~~~~l~~~~~--~l~~~~a~~~~~-eL~el~~ql~~~~~~a 349 (1353)
T TIGR02680 280 QLSRDLGRARDELETAREEERELDARTE-------ALEREADALRTRLE--ALQGSPAYQDAE-ELERARADAEALQAAA 349 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH--HhcCCHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 4555555555555555555555554442 11233333333332 678889765543 4556666666655555
Q ss_pred hhhh
Q psy9275 155 KRLR 158 (284)
Q Consensus 155 ~~~e 158 (284)
....
T Consensus 350 ~~~~ 353 (1353)
T TIGR02680 350 ADAR 353 (1353)
T ss_pred HHHH
Confidence 4443
No 166
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=43.36 E-value=70 Score=32.97 Aligned_cols=17 Identities=29% Similarity=0.261 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy9275 139 GMQKLNSKIKSLELQGK 155 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~ 155 (284)
.|+.|..||+.|+.++.
T Consensus 105 KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 105 RIEKLGQDNAALAEQVK 121 (475)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46677777777776663
No 167
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=42.97 E-value=80 Score=31.44 Aligned_cols=22 Identities=18% Similarity=0.284 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhH
Q psy9275 139 GMQKLNSKIKSLELQGKRLREV 160 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~ 160 (284)
+-++|++||++|+.++.+++..
T Consensus 40 EN~~LKkEN~~Lk~eVerLE~e 61 (420)
T PF07407_consen 40 ENHSLKKENNDLKIEVERLENE 61 (420)
T ss_pred HhHHHHHHHHHHHHHHHHHHHH
Confidence 5667888888888777777654
No 168
>KOG3119|consensus
Probab=42.64 E-value=60 Score=30.61 Aligned_cols=62 Identities=15% Similarity=0.184 Sum_probs=46.2
Q ss_pred chhhhhhhHHHHHHHHhhhhhhhHHHHHHHhhcccccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy9275 30 NRERERDELLREKELKEKVDHLTYQMEWRALKGNATFSESAAPPGSDRAKLEVLEKVIEGYRQRMEHIEADQG 102 (284)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~e~e~~~lk~~~~~~e~~~~~~~l~~ki~eLE~~l~~~R~~~~~~~~~l~ 102 (284)
....+.++.-|.+-.+++|++..-.++=...+. +.+..||..||++-+.+|.+++++..++.
T Consensus 185 ~~~~~~~~~~y~err~rNN~A~~kSR~~~k~~~-----------~e~~~r~~~leken~~lr~~v~~l~~el~ 246 (269)
T KOG3119|consen 185 SSPVEKKDPEYKERRRRNNEAVRKSRDKRKQKE-----------DEMAHRVAELEKENEALRTQVEQLKKELA 246 (269)
T ss_pred CCchhcCCHHHHHHHHhhhHHHHHhhhhHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566778888888888887655444222222 46889999999999999999999998884
No 169
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=42.49 E-value=26 Score=30.03 Aligned_cols=27 Identities=11% Similarity=0.278 Sum_probs=14.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy9275 75 SDRAKLEVLEKVIEGYRQRMEHIEADQ 101 (284)
Q Consensus 75 ~l~~ki~eLE~~l~~~R~~~~~~~~~l 101 (284)
.+.+||+-||..++.....+......|
T Consensus 77 ~l~rriq~LEeele~ae~~L~e~~ekl 103 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAEKKLKETTEKL 103 (143)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666655555555554444443
No 170
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=42.44 E-value=68 Score=23.51 Aligned_cols=27 Identities=19% Similarity=0.278 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy9275 76 DRAKLEVLEKVIEGYRQRMEHIEADQG 102 (284)
Q Consensus 76 l~~ki~eLE~~l~~~R~~~~~~~~~l~ 102 (284)
+...+.+|+..++.+++++..++.++.
T Consensus 22 ~~~ei~~l~~~i~~l~~e~~~L~~ei~ 48 (80)
T PF04977_consen 22 LNQEIAELQKEIEELKKENEELKEEIE 48 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666654
No 171
>smart00338 BRLZ basic region leucin zipper.
Probab=42.09 E-value=94 Score=22.57 Aligned_cols=37 Identities=22% Similarity=0.426 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy9275 139 GMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRLREVY 184 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi~~~eKr~~RLKEVF 184 (284)
.+..|..+...|.. +..+|+.++..+...+..|++.+
T Consensus 27 ~~~~Le~~~~~L~~---------en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 27 EIEELERKVEQLEA---------ENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555555555553 33355555555555555555543
No 172
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=41.89 E-value=31 Score=27.92 Aligned_cols=56 Identities=9% Similarity=0.185 Sum_probs=25.5
Q ss_pred ccCH----HHHHHHH-HHHHHHHHHHHHHHHHhhhhhH-----HHHHHHHHHHHhHHHHHHHHHHH
Q psy9275 128 DNNR----ETVKQMA-GMQKLNSKIKSLELQGKRLREV-----YKAAKLNNKIKSLELQGKRLREV 183 (284)
Q Consensus 128 r~NP----~a~~~~~-~le~Lk~ENe~L~~~l~~~e~~-----~E~~~Lk~qi~~~eKr~~RLKEV 183 (284)
-.|| .+..... +++.|..||..|..++..+... .....++..+..+++....++..
T Consensus 17 GYd~~eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~aq~~a~~~~~~ 82 (131)
T PF05103_consen 17 GYDPDEVDDFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQAQETADEIKAE 82 (131)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT----------------------------
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhhhhhhHHHHHHH
Confidence 4588 3344555 8999999999999999887754 12333344444444444444433
No 173
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=41.60 E-value=4.5e+02 Score=27.75 Aligned_cols=33 Identities=9% Similarity=0.118 Sum_probs=23.7
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy9275 71 APPGSDRAKLEVLEKVIEGYRQRMEHIEADQGL 103 (284)
Q Consensus 71 ~~~~~l~~ki~eLE~~l~~~R~~~~~~~~~l~~ 103 (284)
.+.+.+...++.++..++.-++....+..+|..
T Consensus 283 ~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~ 315 (546)
T PF07888_consen 283 QENEALKEQLRSAQEQLQASQQEAELLRKELSD 315 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567777788888888888888777777753
No 174
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=41.39 E-value=3.4e+02 Score=30.70 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=11.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHH
Q psy9275 163 AAKLNNKIKSLELQGKRLREVYKA 186 (284)
Q Consensus 163 ~~~Lk~qi~~~eKr~~RLKEVF~~ 186 (284)
..++..++..++.....+++.-..
T Consensus 886 ~~~l~~~l~~~~~~~~~~~~~~~~ 909 (1163)
T COG1196 886 KEELEEELRELESELAELKEEIEK 909 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555544333
No 175
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=41.26 E-value=4.8e+02 Score=29.72 Aligned_cols=30 Identities=23% Similarity=0.296 Sum_probs=23.3
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy9275 73 PGSDRAKLEVLEKVIEGYRQRMEHIEADQG 102 (284)
Q Consensus 73 ~~~l~~ki~eLE~~l~~~R~~~~~~~~~l~ 102 (284)
...++.+++.++..++....+.+.+++.+.
T Consensus 602 ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~ 631 (1201)
T PF12128_consen 602 EEELRERLEQAEDQLQSAEERQEELEKQLK 631 (1201)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 336888888888888888888877777764
No 176
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=41.15 E-value=2.2e+02 Score=24.10 Aligned_cols=62 Identities=19% Similarity=0.237 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhH---------------H--HHHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHh
Q psy9275 139 GMQKLNSKIKSLELQGKRLREV---------------Y--KAAKLNNKIKSLELQGKRLR---EVYKAASQEFRETVYLL 198 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~---------------~--E~~~Lk~qi~~~eKr~~RLK---EVF~~Ks~EFReav~~L 198 (284)
++++--.|++.-+..+..+.++ + -+.+|++.++.+++|..+|. +.-.++..+.+..++..
T Consensus 31 ~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~ 110 (119)
T COG1382 31 QLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKA 110 (119)
T ss_pred HHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666677666666666654 1 14555555555555555443 33344555667777777
Q ss_pred hc
Q psy9275 199 FG 200 (284)
Q Consensus 199 lG 200 (284)
||
T Consensus 111 l~ 112 (119)
T COG1382 111 LG 112 (119)
T ss_pred hh
Confidence 65
No 177
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=41.13 E-value=1.4e+02 Score=21.92 Aligned_cols=45 Identities=24% Similarity=0.305 Sum_probs=25.3
Q ss_pred HHH-HHHHHHHHHHHHHHHHhhhhhH------------HHHHHHHHHHHhHHHHHHHH
Q psy9275 136 QMA-GMQKLNSKIKSLELQGKRLREV------------YKAAKLNNKIKSLELQGKRL 180 (284)
Q Consensus 136 ~~~-~le~Lk~ENe~L~~~l~~~e~~------------~E~~~Lk~qi~~~eKr~~RL 180 (284)
+++ +++.++.+.+.+..+|.+-.-. ..+.+++.++..++..+.+|
T Consensus 8 rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~L 65 (66)
T PF10458_consen 8 RLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQL 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444 7777777777777777653322 22444555555555555444
No 178
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=41.00 E-value=1.6e+02 Score=29.17 Aligned_cols=55 Identities=24% Similarity=0.311 Sum_probs=41.4
Q ss_pred CH-HHHHHHH-HHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHhHHHHHHHHHHHH
Q psy9275 130 NR-ETVKQMA-GMQKLNSKIKSLELQGKRLREV-YKAAKLNNKIKSLELQGKRLREVY 184 (284)
Q Consensus 130 NP-~a~~~~~-~le~Lk~ENe~L~~~l~~~e~~-~E~~~Lk~qi~~~eKr~~RLKEVF 184 (284)
|+ +..+.+. .++.|+.+.+.|.+++.+.... ..+.+++.++++.+|+..-+++.-
T Consensus 239 ~~~~~~~~l~~~~~~~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~~~~~~~ 296 (406)
T PF02388_consen 239 NGKEYLESLQEKLEKLEKEIEKLEEKLEKNPKKKNKLKELEEQLASLEKRIEEAEELI 296 (406)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66 6666554 7889999999998887766532 557788889999999888877763
No 179
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=40.87 E-value=1.4e+02 Score=22.89 Aligned_cols=46 Identities=20% Similarity=0.245 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhH------------HHHHHHHHHHHhHHHHHHHHHHHH
Q psy9275 139 GMQKLNSKIKSLELQGKRLREV------------YKAAKLNNKIKSLELQGKRLREVY 184 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~------------~E~~~Lk~qi~~~eKr~~RLKEVF 184 (284)
+|..|..|-+.|..+--..... .++..++..++..++....|++..
T Consensus 13 ~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l 70 (74)
T PF12329_consen 13 QIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERL 70 (74)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5666776666665443332211 334445555555555555555443
No 180
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=40.72 E-value=86 Score=30.71 Aligned_cols=25 Identities=24% Similarity=0.453 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9275 76 DRAKLEVLEKVIEGYRQRMEHIEAD 100 (284)
Q Consensus 76 l~~ki~eLE~~l~~~R~~~~~~~~~ 100 (284)
.+.++..|...+..+|+++.++.-|
T Consensus 77 sre~Nk~L~~Ev~~Lrqkl~E~qGD 101 (319)
T PF09789_consen 77 SREQNKKLKEEVEELRQKLNEAQGD 101 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhch
Confidence 5666667777777777777665555
No 181
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=40.45 E-value=63 Score=27.65 Aligned_cols=34 Identities=15% Similarity=0.195 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhH-----HHHHHHHHHHH
Q psy9275 138 AGMQKLNSKIKSLELQGKRLREV-----YKAAKLNNKIK 171 (284)
Q Consensus 138 ~~le~Lk~ENe~L~~~l~~~e~~-----~E~~~Lk~qi~ 171 (284)
+++.+|+.||.-|+..+..+++. +.+.-|+.|+.
T Consensus 85 ETI~~lk~EN~fLKeAl~s~QE~y~ed~kTI~~L~~qL~ 123 (126)
T PF13118_consen 85 ETIEALKNENRFLKEALYSMQELYEEDRKTIELLREQLK 123 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 59999999999999998877654 33555555543
No 182
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=40.02 E-value=31 Score=36.62 Aligned_cols=47 Identities=13% Similarity=0.164 Sum_probs=0.0
Q ss_pred hHHHHHHHhhcccccccCC----CCCcchHHHHHHHHHHHHHHHHHHHHHH
Q psy9275 52 TYQMEWRALKGNATFSESA----APPGSDRAKLEVLEKVIEGYRQRMEHIE 98 (284)
Q Consensus 52 ~~e~e~~~lk~~~~~~e~~----~~~~~l~~ki~eLE~~l~~~R~~~~~~~ 98 (284)
++-.|+.+|+.+..+++.- .+......++.+++..++.+.+....++
T Consensus 410 L~~kE~d~LR~~L~syd~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ele 460 (722)
T PF05557_consen 410 LATKERDYLRAQLKSYDKEETTMNPSEQDTQRIKEIEDLEQLVDEYKAELE 460 (722)
T ss_dssp ---------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHhhhhhccccCchhHHHHHhhHHHHHHHHHHHHHHHH
Confidence 6778888888888877732 1222345566666655555555333333
No 183
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=39.88 E-value=1.4e+02 Score=26.61 Aligned_cols=44 Identities=20% Similarity=0.311 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy9275 140 MQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRLREVYK 185 (284)
Q Consensus 140 le~Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi~~~eKr~~RLKEVF~ 185 (284)
...++.||++|...+..+. ..+..|++++..+.++..=+.|=|.
T Consensus 99 ~~~~~~e~~~l~~e~~~l~--~~~e~Le~e~~~L~~~~~~~~eDY~ 142 (161)
T TIGR02894 99 DQALQKENERLKNQNESLQ--KRNEELEKELEKLRQRLSTIEEDYQ 142 (161)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666654433322 2233344444444444443344333
No 184
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=39.85 E-value=3.3e+02 Score=29.88 Aligned_cols=38 Identities=26% Similarity=0.222 Sum_probs=28.7
Q ss_pred hHHHHHHHhhcccccc-cCC-CCCc-chHHHHHHHHHHHHH
Q psy9275 52 TYQMEWRALKGNATFS-ESA-APPG-SDRAKLEVLEKVIEG 89 (284)
Q Consensus 52 ~~e~e~~~lk~~~~~~-e~~-~~~~-~l~~ki~eLE~~l~~ 89 (284)
-||.|+..||.+.+-+ +|+ .++. .|..+|+.|-++++.
T Consensus 433 ~Le~elekLk~eilKAk~s~~~~~~~~L~e~IeKLk~E~d~ 473 (762)
T PLN03229 433 ELEGEVEKLKEQILKAKESSSKPSELALNEMIEKLKKEIDL 473 (762)
T ss_pred cHHHHHHHHHHHHHhcccccCCCCChHHHHHHHHHHHHHHH
Confidence 6888999999998877 443 3333 589999999887764
No 185
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=39.74 E-value=1.8e+02 Score=26.84 Aligned_cols=32 Identities=22% Similarity=0.233 Sum_probs=27.2
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy9275 71 APPGSDRAKLEVLEKVIEGYRQRMEHIEADQG 102 (284)
Q Consensus 71 ~~~~~l~~ki~eLE~~l~~~R~~~~~~~~~l~ 102 (284)
.++..+...|.++|..+++.|+++....+...
T Consensus 32 s~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~ 63 (207)
T PF05546_consen 32 SEIEKLKKSIEELEDELEAARQEVREAKAAYD 63 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999988777664
No 186
>KOG1853|consensus
Probab=39.72 E-value=2.7e+02 Score=26.96 Aligned_cols=72 Identities=18% Similarity=0.220 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccccccccccccccccceeeeeecccCHHHHHHHH-HHHHHHHHHHHHHHHHhhhhh
Q psy9275 81 EVLEKVIEGYRQRMEHIEADQGLVCVIPGQNSEKVAQQKVQELQMEADNNRETVKQMA-GMQKLNSKIKSLELQGKRLRE 159 (284)
Q Consensus 81 ~eLE~~l~~~R~~~~~~~~~l~~~~lE~~~~~g~~~~~~tkvlIL~lr~NP~a~~~~~-~le~Lk~ENe~L~~~l~~~e~ 159 (284)
.+||..|+.+.+++..++.+..-+..|..+++..++-...+-. ...-+++ .+..+++-++.|+..++.++.
T Consensus 48 aelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y--------~q~s~Leddlsqt~aikeql~kyiReLEQ 119 (333)
T KOG1853|consen 48 AELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFY--------QQESQLEDDLSQTHAIKEQLRKYIRELEQ 119 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777777666664333333333443333322100 0011333 566666666777766666665
Q ss_pred H
Q psy9275 160 V 160 (284)
Q Consensus 160 ~ 160 (284)
.
T Consensus 120 a 120 (333)
T KOG1853|consen 120 A 120 (333)
T ss_pred h
Confidence 3
No 187
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=39.57 E-value=3.9e+02 Score=26.45 Aligned_cols=89 Identities=17% Similarity=0.282 Sum_probs=53.1
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHhh----------ceEEEee-CCeeEEE
Q psy9275 146 KIKSLELQGKRLREVYKAAKLNNKIKSLELQGKR-LREVYKAASQEFRETVYLLF----------GYKVDRT-NCMYKLA 213 (284)
Q Consensus 146 ENe~L~~~l~~~e~~~E~~~Lk~qi~~~eKr~~R-LKEVF~~Ks~EFReav~~Ll----------GYkIdf~-ng~~rL~ 213 (284)
....+..+|....+..-+...+..+..+..++.+ ++..+..+-..+......|- ||-|-.. +|+ -|+
T Consensus 335 ~L~~l~~rL~~lsP~~~L~r~~qrL~~L~~rL~~a~~~~L~~~~~rL~~l~~rL~~lsP~~~L~RGya~v~~~~g~-~i~ 413 (438)
T PRK00286 335 RLERLSQRLQQQNPQRRIERAQQRLEQLEQRLRRAMRRQLKRKRQRLEALAQQLEALSPLATLARGYAIVRDEDGK-VIR 413 (438)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHhcCceEEEEeCCCC-Eec
Confidence 3333444444444334455556666666655433 33333444444444444443 9998876 666 678
Q ss_pred eeccCCCCCceEEEecCCeeee
Q psy9275 214 SMYADGPDENLLFQSTEGQLNL 235 (284)
Q Consensus 214 S~Ya~s~ed~LvF~~~~G~mkl 235 (284)
|.-.-+++|.|.....+|.++.
T Consensus 414 s~~~~~~~d~i~i~~~dG~~~~ 435 (438)
T PRK00286 414 SAKQLKPGDRLTIRLADGEVEA 435 (438)
T ss_pred cHHHCCCCCEEEEEECCeeEEE
Confidence 8888888999999998987654
No 188
>KOG0994|consensus
Probab=39.53 E-value=4.4e+02 Score=30.80 Aligned_cols=64 Identities=17% Similarity=0.175 Sum_probs=48.7
Q ss_pred HHHH-HHHHHHHHHHHHHHHHhhhhhH------------HHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHh
Q psy9275 135 KQMA-GMQKLNSKIKSLELQGKRLREV------------YKAAKLNNKIKSLELQGKRLREVYKA-ASQEFRETVYLL 198 (284)
Q Consensus 135 ~~~~-~le~Lk~ENe~L~~~l~~~e~~------------~E~~~Lk~qi~~~eKr~~RLKEVF~~-Ks~EFReav~~L 198 (284)
.++. ..+.|+.+..++.++|...|.. +++..|+.+...+.+-..+|+|-+.+ |...|+-|..++
T Consensus 1228 ~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL~e~~~~ik~sdi~GA~~~~ 1305 (1758)
T KOG0994|consen 1228 AQLASATESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESLQREFNGLLTTYKELREQLEKIKESDILGAFNST 1305 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhHHHHH
Confidence 3443 6788888888888888777764 67888999999999999999998876 555666665554
No 189
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=39.47 E-value=2.4e+02 Score=24.07 Aligned_cols=31 Identities=13% Similarity=0.145 Sum_probs=25.4
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy9275 72 PPGSDRAKLEVLEKVIEGYRQRMEHIEADQG 102 (284)
Q Consensus 72 ~~~~l~~ki~eLE~~l~~~R~~~~~~~~~l~ 102 (284)
++..|..|+..||..++.+.+.+......++
T Consensus 36 EI~sL~~K~~~lE~eld~~~~~l~~~k~~le 66 (143)
T PF12718_consen 36 EITSLQKKNQQLEEELDKLEEQLKEAKEKLE 66 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888899999999999988888777764
No 190
>KOG0976|consensus
Probab=39.28 E-value=2e+02 Score=32.05 Aligned_cols=40 Identities=10% Similarity=0.068 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy9275 161 YKAAKLNNKIKSLELQGKRLREVYKAASQEFRETVYLLFG 200 (284)
Q Consensus 161 ~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFReav~~LlG 200 (284)
.++..|+.+.....||+.=|||-.++.--++|.+...+-.
T Consensus 483 qe~emlKaen~rqakkiefmkEeiQethldyR~els~lA~ 522 (1265)
T KOG0976|consen 483 QEYEMLKAENERQAKKIEFMKEEIQETHLDYRSELSELAH 522 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7788899999999999999999999999999999888753
No 191
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=38.74 E-value=77 Score=29.59 Aligned_cols=119 Identities=21% Similarity=0.228 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhceEEEee-CCeeEEEeeccCCC
Q psy9275 142 KLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRLREVYKAASQEFRETVYLLFGYKVDRT-NCMYKLASMYADGP 220 (284)
Q Consensus 142 ~Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFReav~~LlGYkIdf~-ng~~rL~S~Ya~s~ 220 (284)
.++.||+.|+.+++.++ .++..|+.++...++-...|+.+|..- | ++ +..--|-++.+. +..-.=.++|+-+|
T Consensus 15 ~~~~e~~~Lk~kir~le--~~l~~Lk~~l~~~~~l~~~L~~~Fs~~-Q-i~--~lk~~~k~~~wt~e~~~~Al~L~~~sp 88 (236)
T PF12017_consen 15 TLKIENKKLKKKIRRLE--KELKKLKQKLEKYQKLENSLKQIFSED-Q-IR--NLKNGGKRRRWTKEDKSFALSLYKCSP 88 (236)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhCcHH-H-HH--HHhcCCCccccCHHHHHhhheeeecCh
Confidence 36667777777777666 556666666655555556667776662 1 11 111112223222 11111111111112
Q ss_pred CCceEEEecCCeeeeeCCcchhhhHHHHHHHhhhCCCchhhhHHhcHHhhhccccc
Q psy9275 221 DENLLFQSTEGQLNLIETDYSKVLKPLLDLHLGRHHSIPMLLSALTQELFQRQTMS 276 (284)
Q Consensus 221 ed~LvF~~~~G~mkll~s~f~~~l~~~i~~wl~~~~SIPaFLAALTLeLfek~T~~ 276 (284)
.-|= -| ....|.==-..-++.|+..-+-=|||+. ..+++-+..++.
T Consensus 89 r~Y~-------yL--~kk~~pLPs~rTL~r~l~~v~~~pGi~~-~il~~l~~~~~~ 134 (236)
T PF12017_consen 89 RAYN-------YL--RKKGYPLPSVRTLQRWLSKVNIDPGILD-FILDLLKNKSMS 134 (236)
T ss_pred HHHH-------HH--HHcCCCCCCHHHHHHHHHhCCCCCCchH-HHHHHHHHccCc
Confidence 1110 01 1111111123456788999999999986 467776665543
No 192
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=38.50 E-value=1.7e+02 Score=24.05 Aligned_cols=21 Identities=14% Similarity=0.126 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhh
Q psy9275 139 GMQKLNSKIKSLELQGKRLRE 159 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~ 159 (284)
+=..|+-||+.|+.+|...+.
T Consensus 37 EN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 37 ENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 455688888888888776553
No 193
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=38.41 E-value=12 Score=34.51 Aligned_cols=48 Identities=19% Similarity=0.250 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhhceEEEee----CCeeEEE---eeccCCCCCceEEEecCCeeeee
Q psy9275 188 SQEFRETVYLLFGYKVDRT----NCMYKLA---SMYADGPDENLLFQSTEGQLNLI 236 (284)
Q Consensus 188 s~EFReav~~LlGYkIdf~----ng~~rL~---S~Ya~s~ed~LvF~~~~G~mkll 236 (284)
..+|.+.|..-+|++|++. ++.|... +-+ +++.+.++||..+|++++.
T Consensus 73 ~~~~~~~i~~~tGi~i~iIsgeeEa~l~~~gv~~~l-~~~~~~lviDIGGGStEl~ 127 (285)
T PF02541_consen 73 SDEFLDRIKKETGIDIEIISGEEEARLSFLGVLSSL-PPDKNGLVIDIGGGSTELI 127 (285)
T ss_dssp HHHHHHHHHHHHSS-EEEE-HHHHHHHHHHHHHHHS-TTTSSEEEEEEESSEEEEE
T ss_pred HHHHHHHHHHHhCCceEEecHHHHHHHHHHHHHhhc-cccCCEEEEEECCCceEEE
Confidence 5678899999999999999 3333322 233 3466789999999987773
No 194
>KOG4603|consensus
Probab=38.28 E-value=1.7e+02 Score=26.64 Aligned_cols=14 Identities=21% Similarity=0.079 Sum_probs=7.3
Q ss_pred HHHhhcccccccCC
Q psy9275 57 WRALKGNATFSESA 70 (284)
Q Consensus 57 ~~~lk~~~~~~e~~ 70 (284)
++++..+--|+.++
T Consensus 13 l~~~~eqNrP~ssq 26 (201)
T KOG4603|consen 13 LRYLQEQNRPYSSQ 26 (201)
T ss_pred HHHHHHhcCCCchH
Confidence 45555555554444
No 195
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=38.00 E-value=1.5e+02 Score=27.17 Aligned_cols=45 Identities=20% Similarity=0.221 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhH-------HHHHHHHHHHHhHHHHHHHHHHH
Q psy9275 139 GMQKLNSKIKSLELQGKRLREV-------YKAAKLNNKIKSLELQGKRLREV 183 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~-------~E~~~Lk~qi~~~eKr~~RLKEV 183 (284)
.++.|+++-++|++.+.+-... .++++.+.+|++++.+...|.+-
T Consensus 140 rl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~ 191 (262)
T PF14257_consen 140 RLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQLKYLDDR 191 (262)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6788888888888877755433 56777777888888887777665
No 196
>PRK10203 hypothetical protein; Provisional
Probab=37.86 E-value=1.8e+02 Score=24.61 Aligned_cols=57 Identities=12% Similarity=0.106 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHhhhhhHHH-HHHHHHHHHhHHHHHHHH--HHHHHHHHHHHHHHHHHhh
Q psy9275 141 QKLNSKIKSLELQGKRLREVYK-AAKLNNKIKSLELQGKRL--REVYKAASQEFRETVYLLF 199 (284)
Q Consensus 141 e~Lk~ENe~L~~~l~~~e~~~E-~~~Lk~qi~~~eKr~~RL--KEVF~~Ks~EFReav~~Ll 199 (284)
-.|++|...|+..|....+..+ ...+.+++..++.|++-+ +-.|-. .+|++-|+.=|
T Consensus 60 l~LrKE~~~l~~~l~~~~d~~~~~~~~~k~L~~l~lr~~~~~~~~~~~~--~~Y~~ki~~kl 119 (122)
T PRK10203 60 LEQRREAIQLLDLLKGIREDDPQYQEVSRRLSLLELKLRQAGLSTDFLR--GDYADKLLNKI 119 (122)
T ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhhhhhhH--HHHHHHHHHHH
Confidence 3588999999999888876543 457888888888877633 222222 55666555443
No 197
>PRK10854 exopolyphosphatase; Provisional
Probab=37.86 E-value=22 Score=36.28 Aligned_cols=48 Identities=10% Similarity=0.194 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhhceEEEeeC----CeeEEEeeccCC--CCCceEEEecCCeeee
Q psy9275 188 SQEFRETVYLLFGYKVDRTN----CMYKLASMYADG--PDENLLFQSTEGQLNL 235 (284)
Q Consensus 188 s~EFReav~~LlGYkIdf~n----g~~rL~S~Ya~s--~ed~LvF~~~~G~mkl 235 (284)
..+|.+.|...+|++|+..+ .+|....+-... +++.++||..+|++++
T Consensus 98 ~~~fl~~i~~~tGl~i~vIsG~EEA~l~~~gv~~~l~~~~~~lvvDIGGGStEl 151 (513)
T PRK10854 98 ATDFLKRAEKVIPYPIEIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTEL 151 (513)
T ss_pred HHHHHHHHHHHHCCCeEEeCHHHHHHHHHhhhhcccCCCCCeEEEEeCCCeEEE
Confidence 46799999999999999993 344333333222 2458999999998777
No 198
>KOG0963|consensus
Probab=37.37 E-value=4.3e+02 Score=28.38 Aligned_cols=25 Identities=20% Similarity=0.040 Sum_probs=17.1
Q ss_pred hHHHHHHHhhhCCCchhhhHHhcHH
Q psy9275 244 LKPLLDLHLGRHHSIPMLLSALTQE 268 (284)
Q Consensus 244 l~~~i~~wl~~~~SIPaFLAALTLe 268 (284)
+..+-+.|....++.|.+.+.--..
T Consensus 427 i~klE~dl~~~~~~~~~~~~~~~~~ 451 (629)
T KOG0963|consen 427 IAKLEQDLLKVQVSPPAEGATARRE 451 (629)
T ss_pred HHHHHhhHhhcccCCCCCcchhhhc
Confidence 4555667777788888887764443
No 199
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=37.28 E-value=3.1e+02 Score=24.68 Aligned_cols=22 Identities=18% Similarity=0.231 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhH
Q psy9275 139 GMQKLNSKIKSLELQGKRLREV 160 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~ 160 (284)
++..|+-|++.|..++..++..
T Consensus 101 ~l~~Lk~e~evL~qr~~kle~E 122 (201)
T PF13851_consen 101 ELKDLKWEHEVLEQRFEKLEQE 122 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777777777776653
No 200
>PRK09343 prefoldin subunit beta; Provisional
Probab=37.00 E-value=2.4e+02 Score=23.32 Aligned_cols=60 Identities=20% Similarity=0.176 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhH------------------------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy9275 139 GMQKLNSKIKSLELQGKRLREV------------------------YKAAKLNNKIKSLELQGKRLREVYKAASQEFRET 194 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~------------------------~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFRea 194 (284)
.++.=..||+.-...|..+.++ ..+.-+...|..++|+..+|.+-+.+.=..+|++
T Consensus 32 ~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~l 111 (121)
T PRK09343 32 QIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEM 111 (121)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555566555555555543 2234455678888888888988888888888888
Q ss_pred HHHh
Q psy9275 195 VYLL 198 (284)
Q Consensus 195 v~~L 198 (284)
+...
T Consensus 112 l~~~ 115 (121)
T PRK09343 112 LSKY 115 (121)
T ss_pred HHhc
Confidence 7753
No 201
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=36.79 E-value=78 Score=25.75 Aligned_cols=58 Identities=17% Similarity=0.263 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhH-HH---HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9275 140 MQKLNSKIKSLELQGKRLREV-YK---AAKLNNKIKSLELQGKRLREVYKAASQEFRETVYL 197 (284)
Q Consensus 140 le~Lk~ENe~L~~~l~~~e~~-~E---~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFReav~~ 197 (284)
+..+.+|+++|+++++..+.- .| .-.++.=+...+.-..-|..+|..-...||.....
T Consensus 4 ~s~I~~eIekLqe~lk~~e~keaERigr~AlKaGL~eieI~d~eL~~~FeeIa~RFrk~~~~ 65 (92)
T PF07820_consen 4 SSKIREEIEKLQEQLKQAETKEAERIGRIALKAGLGEIEISDAELQAAFEEIAARFRKGKKK 65 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccCCHHHHHHHHHHHHHHHhccccc
Confidence 456777888888887776643 11 33456667777778888999999999999976543
No 202
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=36.54 E-value=4e+02 Score=25.76 Aligned_cols=24 Identities=17% Similarity=0.095 Sum_probs=12.0
Q ss_pred HHHHHhhhhhh--hHHHHHHHhhccc
Q psy9275 41 EKELKEKVDHL--TYQMEWRALKGNA 64 (284)
Q Consensus 41 ~~~~~~~~~~~--~~e~e~~~lk~~~ 64 (284)
.+||+..++.. .+.+.++-.|+.+
T Consensus 101 F~EY~~a~~d~r~lm~~Qf~lvK~~a 126 (312)
T smart00787 101 FKEYFSASPDVKLLMDKQFQLVKTFA 126 (312)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 35566555544 4444445555544
No 203
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=36.53 E-value=1.6e+02 Score=21.36 Aligned_cols=13 Identities=31% Similarity=0.560 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHH
Q psy9275 139 GMQKLNSKIKSLE 151 (284)
Q Consensus 139 ~le~Lk~ENe~L~ 151 (284)
.++.|..++..|.
T Consensus 27 ~~~~Le~~~~~L~ 39 (64)
T PF00170_consen 27 YIEELEEKVEELE 39 (64)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 4555555555544
No 204
>COG5493 Uncharacterized conserved protein containing a coiled-coil domain [Function unknown]
Probab=36.51 E-value=3.6e+02 Score=25.16 Aligned_cols=64 Identities=28% Similarity=0.401 Sum_probs=36.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHhh---ceEEEee-----CCeeEEEeeccCCCCCc-eEEEecCCeeeeeC
Q psy9275 168 NKIKSLELQGKRLREVYKAAS-QEFRETVYLLF---GYKVDRT-----NCMYKLASMYADGPDEN-LLFQSTEGQLNLIE 237 (284)
Q Consensus 168 ~qi~~~eKr~~RLKEVF~~Ks-~EFReav~~Ll---GYkIdf~-----ng~~rL~S~Ya~s~ed~-LvF~~~~G~mkll~ 237 (284)
..|..++..+.=|---|+--+ .-||++|+.++ ||.|..- +|- +|.. |.|. +-.-..+|..-+++
T Consensus 95 edi~rlE~~i~~lgaRwGilsEdAFR~gv~eil~e~g~~v~rw~~yDkeG~-----VYg~-PS~VE~DvvVKDg~vvlVE 168 (231)
T COG5493 95 EDIKRLETIITGLGARWGILSEDAFRQGVREILREVGYVVERWLYYDKEGH-----VYGH-PSDVEYDVVVKDGVVVLVE 168 (231)
T ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhchheeeEEEEcCCcc-----eecC-CcceEEEEEEecCcEEEEE
Confidence 344444444444444454433 35999999996 9998865 454 4553 4432 22223377766666
No 205
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=36.44 E-value=1.5e+02 Score=25.75 Aligned_cols=70 Identities=19% Similarity=0.247 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-------hhceEEEee---CCeeEEEeeccCCCCCceEE-Eec
Q psy9275 161 YKAAKLNNKIKSLELQGKRLREVYKAASQEFRETVYL-------LFGYKVDRT---NCMYKLASMYADGPDENLLF-QST 229 (284)
Q Consensus 161 ~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFReav~~-------LlGYkIdf~---ng~~rL~S~Ya~s~ed~LvF-~~~ 229 (284)
.++.+++.+++..++++..+........+..-=+=|. =+-|-+-+. |+-|-|+|+|.. ++|-++ ++.
T Consensus 53 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~kvgvvRYnAF~dmGg~LSFslAlLD~~~nGvVltsI~~R--e~s~~YaK~I 130 (151)
T PF14584_consen 53 DQIDELKEELEELEKRIEELEEKLRNCVQKVGVVRYNAFEDMGGDLSFSLALLDDNNNGVVLTSIHSR--EESRTYAKPI 130 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccceEEEEEccCcccccccceeeeEEEeCCCCEEEEEeeecC--CCcEEEEEEe
Confidence 5677777788888888887777766544332111111 234556666 678999999985 455444 555
Q ss_pred -CCe
Q psy9275 230 -EGQ 232 (284)
Q Consensus 230 -~G~ 232 (284)
+|.
T Consensus 131 ~~G~ 134 (151)
T PF14584_consen 131 VNGQ 134 (151)
T ss_pred cCCc
Confidence 553
No 206
>PTZ00449 104 kDa microneme/rhoptry antigen; Provisional
Probab=36.41 E-value=55 Score=34.73 Aligned_cols=88 Identities=18% Similarity=0.260 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHH--HhhceEEEee--CCeeEEEeeccCCCCCceEEEecCCe-eeeeCCcchhhhHHHHHHHhhhCCCc
Q psy9275 184 YKAASQEFRETVY--LLFGYKVDRT--NCMYKLASMYADGPDENLLFQSTEGQ-LNLIETDYSKVLKPLLDLHLGRHHSI 258 (284)
Q Consensus 184 F~~Ks~EFReav~--~LlGYkIdf~--ng~~rL~S~Ya~s~ed~LvF~~~~G~-mkll~s~f~~~l~~~i~~wl~~~~SI 258 (284)
|-++.++.|++|. +.|...+.|+ |++|-+.|-+.. ..+-.+|-+.+|. .+|+-..-.+-+..+-..+| -|+
T Consensus 133 ylaklq~irq~ih~es~fsln~afq~en~kye~~s~~~~-~~~mv~f~pknghickmvy~kniri~ka~~n~~v---tsv 208 (943)
T PTZ00449 133 YLAKLQEIRQAIHIESFFSLNLAFQHENNKYEMESHAKH-GAKMVTFIPKNGHICKMVYDKNIRIFKALGNDTV---TSV 208 (943)
T ss_pred HHHHHHHHHHHHhhhhheeeeeeeeecccceeeeehhhc-cceEEEEecCCCceEeeeeccceeeeehhccchh---hhh
Confidence 3445566677664 5677788888 999999998764 3456788888885 44442100111122222222 356
Q ss_pred hhhhHHhcHHhhhcccc
Q psy9275 259 PMLLSALTQELFQRQTM 275 (284)
Q Consensus 259 PaFLAALTLeLfek~T~ 275 (284)
=+|+-.|-|-|.+--.+
T Consensus 209 igffrglklllinif~i 225 (943)
T PTZ00449 209 IGFFRGLKLLLINIFSI 225 (943)
T ss_pred HHHhhhhhhheEEEEEe
Confidence 67777776666554433
No 207
>PRK04863 mukB cell division protein MukB; Provisional
Probab=36.15 E-value=8e+02 Score=29.06 Aligned_cols=103 Identities=11% Similarity=0.085 Sum_probs=0.0
Q ss_pred CcchHHHHHHHHHHH----------HHHHHHHHHHHhhcccccccccccccccccccceeeeeecccCHHHHHHHH-HHH
Q psy9275 73 PGSDRAKLEVLEKVI----------EGYRQRMEHIEADQGLVCVIPGQNSEKVAQQKVQELQMEADNNRETVKQMA-GMQ 141 (284)
Q Consensus 73 ~~~l~~ki~eLE~~l----------~~~R~~~~~~~~~l~~~~lE~~~~~g~~~~~~tkvlIL~lr~NP~a~~~~~-~le 141 (284)
.+++..+|++++..+ ......++.++..+. .|..+|+....+. +.+
T Consensus 889 ~~~~~~~~~~~~~~~~~~~~a~~y~~~~~~~L~qLE~~l~-----------------------~L~~Dp~~~e~lr~e~~ 945 (1486)
T PRK04863 889 DETLADRVEEIREQLDEAEEAKRFVQQHGNALAQLEPIVS-----------------------VLQSDPEQFEQLKQDYQ 945 (1486)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HhCCCHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhhhhhH---------------------------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy9275 142 KLNSKIKSLELQGKRLREV---------------------------YKAAKLNNKIKSLELQGKRLREVYKAASQEFRET 194 (284)
Q Consensus 142 ~Lk~ENe~L~~~l~~~e~~---------------------------~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFRea 194 (284)
..++.-..+..++..+.+. ..+..++.+-..+.+..+..+.-|++..+.+...
T Consensus 946 ~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~l~~~~~~~~~Le~~Le~iE~~~~~areql~qaq~q~~q~~q~l~sl 1025 (1486)
T PRK04863 946 QAQQTQRDAKQQAFALTEVVQRRAHFSYEDAAEMLAKNSDLNEKLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASL 1025 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHhHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHh
Q psy9275 195 VYLL 198 (284)
Q Consensus 195 v~~L 198 (284)
-.++
T Consensus 1026 kssl 1029 (1486)
T PRK04863 1026 KSSY 1029 (1486)
T ss_pred HHHH
No 208
>KOG4807|consensus
Probab=35.69 E-value=1.7e+02 Score=30.03 Aligned_cols=18 Identities=6% Similarity=0.235 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHhh
Q psy9275 139 GMQKLNSKIKSLELQGKR 156 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~ 156 (284)
.|...+.||+.|.++-..
T Consensus 457 aLRqCQrEnQELnaHNQE 474 (593)
T KOG4807|consen 457 ALRQCQRENQELNAHNQE 474 (593)
T ss_pred HHHHHHHhhHHHHHHHHH
Confidence 566666666666554444
No 209
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=35.68 E-value=3.1e+02 Score=24.12 Aligned_cols=59 Identities=24% Similarity=0.270 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHhhhhhH-----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9275 141 QKLNSKIKSLELQGKRLREV-----YKAAKLNNKIKSLELQGKRLREVYKAASQEFRETVYLLF 199 (284)
Q Consensus 141 e~Lk~ENe~L~~~l~~~e~~-----~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFReav~~Ll 199 (284)
+.++.|+.+|..++..++.. .....+..++..++-+..-||--|+.-....++.+-.+-
T Consensus 85 d~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~er~~e~l~~~~ 148 (158)
T PF09744_consen 85 DQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLHERERELLRKLK 148 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777776666643 111222234444444555555556666666666665543
No 210
>PF10850 DUF2653: Protein of unknown function (DUF2653); InterPro: IPR020516 This entry contains proteins with no known function.
Probab=35.57 E-value=79 Score=25.68 Aligned_cols=79 Identities=16% Similarity=0.123 Sum_probs=56.9
Q ss_pred HHHHHHHHHhhceEEEeeCCeeEEEeeccCCCCCceEEEec-CCeeeeeCCcchhhhHHHHHHHhhhCCCchhhhHHhcH
Q psy9275 189 QEFRETVYLLFGYKVDRTNCMYKLASMYADGPDENLLFQST-EGQLNLIETDYSKVLKPLLDLHLGRHHSIPMLLSALTQ 267 (284)
Q Consensus 189 ~EFReav~~LlGYkIdf~ng~~rL~S~Ya~s~ed~LvF~~~-~G~mkll~s~f~~~l~~~i~~wl~~~~SIPaFLAALTL 267 (284)
++...||+..+..+=...-..+-+.=+|.+ +--+.-... +|+.+.+. ..++-+.+..|+.+...+-.|.+.+.|
T Consensus 8 qeIiNAvCl~~A~~~~i~P~dVeVeL~yDd--d~GFsAEv~~ngr~q~l~---~~nlieAIr~~l~~~~~~~p~~~~i~L 82 (91)
T PF10850_consen 8 QEIINAVCLHIAERKGIQPEDVEVELMYDD--DYGFSAEVWVNGRSQYLI---EANLIEAIRQYLEEEYNMDPFRAGIEL 82 (91)
T ss_pred HHHHHHHHHHHHHhcCCCcccEEEEEEEec--CCCeeEEEEECCeEEEEc---hhhHHHHHHHHHHHHhCCCcchhheEE
Confidence 567778887777665555456666777762 122554544 67767665 367889999999999999999999999
Q ss_pred Hhhhc
Q psy9275 268 ELFQR 272 (284)
Q Consensus 268 eLfek 272 (284)
++=++
T Consensus 83 ~ldde 87 (91)
T PF10850_consen 83 ELDDE 87 (91)
T ss_pred EEccc
Confidence 87554
No 211
>KOG4360|consensus
Probab=35.49 E-value=5.6e+02 Score=27.11 Aligned_cols=52 Identities=13% Similarity=0.240 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy9275 139 GMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRLREVYKAASQEFR 192 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFR 192 (284)
++..+.-|++.+.+.|....+. -.++.++....+-+..-.+++|...=.|..
T Consensus 248 k~k~~~~Ekeel~~~Lq~~~da--~~ql~aE~~EleDkyAE~m~~~~EaeeELk 299 (596)
T KOG4360|consen 248 KIKYLRHEKEELDEHLQAYKDA--QRQLTAELEELEDKYAECMQMLHEAEEELK 299 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777777777665533 234566667777777777777776555543
No 212
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=35.33 E-value=39 Score=31.88 Aligned_cols=27 Identities=26% Similarity=0.335 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy9275 76 DRAKLEVLEKVIEGYRQRMEHIEADQG 102 (284)
Q Consensus 76 l~~ki~eLE~~l~~~R~~~~~~~~~l~ 102 (284)
.-.||..||++|..+|.+++.+-+..+
T Consensus 120 AlqKIsALEdELs~LRaQIA~IV~~qe 146 (253)
T PF05308_consen 120 ALQKISALEDELSRLRAQIAKIVAAQE 146 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 568999999999999999999877665
No 213
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=35.12 E-value=66 Score=25.27 Aligned_cols=19 Identities=11% Similarity=0.258 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q psy9275 140 MQKLNSKIKSLELQGKRLR 158 (284)
Q Consensus 140 le~Lk~ENe~L~~~l~~~e 158 (284)
+..|++||.+|..++.+++
T Consensus 2 i~ei~eEn~~Lk~eiqkle 20 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLE 20 (76)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4567778887776666544
No 214
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=35.05 E-value=3.6e+02 Score=24.73 Aligned_cols=21 Identities=14% Similarity=0.223 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhh
Q psy9275 139 GMQKLNSKIKSLELQGKRLRE 159 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~ 159 (284)
.++.|+.||..|......+..
T Consensus 103 ~i~~Lqeen~kl~~e~~~lk~ 123 (193)
T PF14662_consen 103 EIETLQEENGKLLAERDGLKK 123 (193)
T ss_pred HHHHHHHHHhHHHHhhhhHHH
Confidence 677777777777766555444
No 215
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=34.99 E-value=2.4e+02 Score=27.21 Aligned_cols=22 Identities=27% Similarity=0.241 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHH
Q psy9275 161 YKAAKLNNKIKSLELQGKRLRE 182 (284)
Q Consensus 161 ~E~~~Lk~qi~~~eKr~~RLKE 182 (284)
.+...++.++........||+.
T Consensus 113 ~e~~sl~~q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 113 EERDSLKNQYEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3455566666666666666654
No 216
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=34.90 E-value=1.4e+02 Score=26.70 Aligned_cols=59 Identities=15% Similarity=0.226 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccceeeeeecccCH-----HHHHHHH-HHHHHHHHHHH
Q psy9275 76 DRAKLEVLEKVIEGYRQRMEHIEADQGLVCVIPGQNSEKVAQQKVQELQMEADNNR-----ETVKQMA-GMQKLNSKIKS 149 (284)
Q Consensus 76 l~~ki~eLE~~l~~~R~~~~~~~~~l~~~~lE~~~~~g~~~~~~tkvlIL~lr~NP-----~a~~~~~-~le~Lk~ENe~ 149 (284)
+..+|..|+.....+..++..+....+ .+..+- ...++.+ +++.|+..|+.
T Consensus 125 l~~~i~~L~~e~~~L~~~~~~l~~~~e-----------------------~~ek~~~e~~~~~~k~~~~ei~~lk~~~~q 181 (189)
T PF10211_consen 125 LEEEIEELEEEKEELEKQVQELKNKCE-----------------------QLEKREEELRQEEEKKHQEEIDFLKKQNQQ 181 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhh
Q psy9275 150 LELQGKRL 157 (284)
Q Consensus 150 L~~~l~~~ 157 (284)
|+.++..+
T Consensus 182 l~~~l~~~ 189 (189)
T PF10211_consen 182 LKAQLEQI 189 (189)
T ss_pred HHHHHhcC
No 217
>PHA02562 46 endonuclease subunit; Provisional
Probab=34.54 E-value=4.9e+02 Score=26.12 Aligned_cols=25 Identities=4% Similarity=0.294 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q psy9275 77 RAKLEVLEKVIEGYRQRMEHIEADQ 101 (284)
Q Consensus 77 ~~ki~eLE~~l~~~R~~~~~~~~~l 101 (284)
..++..|+..++.+++++..++..+
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i 322 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAI 322 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666665555444
No 218
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=34.47 E-value=5e+02 Score=26.57 Aligned_cols=61 Identities=18% Similarity=0.245 Sum_probs=28.4
Q ss_pred HHHHHhhhhhh--hHHHHHHHhhcccccccCC------------CCCcchHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy9275 41 EKELKEKVDHL--TYQMEWRALKGNATFSESA------------APPGSDRAKLEVLEKVIEGYRQRMEHIEADQ 101 (284)
Q Consensus 41 ~~~~~~~~~~~--~~e~e~~~lk~~~~~~e~~------------~~~~~l~~ki~eLE~~l~~~R~~~~~~~~~l 101 (284)
+.+||.+-.+- .-|.-+..||+........ .+.+.+...|..|+..|+.++.++...+..+
T Consensus 237 l~~Yk~kA~~iLq~kEklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~ 311 (511)
T PF09787_consen 237 LQQYKQKAQRILQSKEKLIESLKEGCLEEGFDSSTNSIELEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQL 311 (511)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHhcccccccccccchhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666442222 3444567777743331111 1222344555555555555555555544444
No 219
>PF11363 DUF3164: Protein of unknown function (DUF3164); InterPro: IPR021505 This entry is represented by Bacteriophage B3, Orf6. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=34.47 E-value=2e+02 Score=26.02 Aligned_cols=98 Identities=20% Similarity=0.214 Sum_probs=61.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhceEE-------Eee--CCeeEEEeeccCCCCCceEEEecCCee
Q psy9275 163 AAKLNNKIKSLELQGKRLREVYKAASQEFRETVYLLFGYKV-------DRT--NCMYKLASMYADGPDENLLFQSTEGQL 233 (284)
Q Consensus 163 ~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFReav~~LlGYkI-------df~--ng~~rL~S~Ya~s~ed~LvF~~~~G~m 233 (284)
+.++-.+...+...+.+.|.-.-.-+..|.+......|.++ .|. +|+|||+=.++ +.+.|++. +
T Consensus 26 V~~~~~~a~~l~~~l~~fK~~~f~d~~af~~l~~e~Yg~k~gg~kGn~Tl~sfDG~~kV~i~~~----~~~~Fde~---l 98 (195)
T PF11363_consen 26 VREIVGKAKELSEQLAEFKAHTFEDIEAFIELSAEEYGVKLGGKKGNVTLTSFDGRYKVTIAVQ----DRISFDER---L 98 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCcCcEEEEEeCCCEEEEEEec----ccCCcChH---H
Confidence 44555566677777788887777778999999999998875 343 66666666665 34455532 1
Q ss_pred eeeCCcchhhhHHHHHHHhhhCCCchhhhHHhcHHhhhccc
Q psy9275 234 NLIETDYSKVLKPLLDLHLGRHHSIPMLLSALTQELFQRQT 274 (284)
Q Consensus 234 kll~s~f~~~l~~~i~~wl~~~~SIPaFLAALTLeLfek~T 274 (284)
+. -..-+++-+..|-.+ +=| -|-++-...|....
T Consensus 99 ~~----Ak~lIde~l~~w~~g--~~~-~l~~lV~~af~~dk 132 (195)
T PF11363_consen 99 QA----AKALIDECLNEWAKG--ADP-ELRALVNRAFQVDK 132 (195)
T ss_pred HH----HHHHHHHHHHHHhcC--CCh-HHHHHHHHHHhcCC
Confidence 10 012355666666544 324 45667777777754
No 220
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=33.92 E-value=14 Score=39.21 Aligned_cols=58 Identities=17% Similarity=0.258 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhH------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9275 139 GMQKLNSKIKSLELQGKRLREV------YKAAKLNNKIKSLELQGKRLREVYKAASQEFRETVY 196 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~------~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFReav~ 196 (284)
++..++.|+..++..+..++.. ..+.+|+..+...+.-+..+.+-|.+.+...+++|-
T Consensus 548 ~l~e~~~e~~~~~~~le~l~~~~~~~~~~ki~~Le~~L~~k~~e~~~~eer~k~~lekak~vi~ 611 (713)
T PF05622_consen 548 KLRELKDELQKKREQLEELEQELNQSLSQKIEELEEALQKKEEEMRAMEERYKKYLEKAKEVIK 611 (713)
T ss_dssp ----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHhh
Confidence 3444445555555555554332 335566666555555555444545444444555544
No 221
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=33.85 E-value=1.6e+02 Score=23.47 Aligned_cols=42 Identities=26% Similarity=0.346 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhH-----HHHHHHHHH
Q psy9275 139 GMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSL-----ELQGKRLRE 182 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi~~~-----eKr~~RLKE 182 (284)
+++.|++|.+....++...+ ..+..|+.+...+ .+|.-||.+
T Consensus 2 ~Le~l~~e~e~~~~kl~q~e--~~~k~L~nr~k~l~k~eRK~RtHRLi~ 48 (86)
T PF12958_consen 2 TLEELQAEIEKAEKKLEQAE--HKIKQLENRKKKLEKKERKERTHRLIE 48 (86)
T ss_pred cHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47778888888887777655 4566666655554 466667765
No 222
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=33.84 E-value=5.8e+02 Score=29.24 Aligned_cols=49 Identities=14% Similarity=0.140 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHH-----HHHHHHHHhHHHHHHHHHHHHHHH
Q psy9275 139 GMQKLNSKIKSLELQGKRLREVYKA-----AKLNNKIKSLELQGKRLREVYKAA 187 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~~E~-----~~Lk~qi~~~eKr~~RLKEVF~~K 187 (284)
+...++.+|+.+...+.......++ ..++.++..++...+.|.+.-+.|
T Consensus 181 e~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~k 234 (1109)
T PRK10929 181 ESAALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQ 234 (1109)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666777777776665554443333 233445666666666666666553
No 223
>KOG1760|consensus
Probab=33.73 E-value=2.4e+02 Score=24.34 Aligned_cols=23 Identities=22% Similarity=0.439 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHhhceEEEe
Q psy9275 183 VYKAASQEFRETVYLLFGYKVDR 205 (284)
Q Consensus 183 VF~~Ks~EFReav~~LlGYkIdf 205 (284)
.-.....+...+.|.=||=.|..
T Consensus 106 ~I~~~m~~LK~~LYaKFgdnINL 128 (131)
T KOG1760|consen 106 SISARMDELKKVLYAKFGDNINL 128 (131)
T ss_pred HHHHHHHHHHHHHHHHhccccCc
Confidence 34455667777789889977753
No 224
>KOG1962|consensus
Probab=33.67 E-value=3.7e+02 Score=24.99 Aligned_cols=17 Identities=18% Similarity=0.135 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy9275 139 GMQKLNSKIKSLELQGK 155 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~ 155 (284)
+-++|-+|++.|++++.
T Consensus 194 EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 194 EYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 44555555555555443
No 225
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=33.37 E-value=2.6e+02 Score=22.67 Aligned_cols=21 Identities=29% Similarity=0.352 Sum_probs=9.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q psy9275 76 DRAKLEVLEKVIEGYRQRMEH 96 (284)
Q Consensus 76 l~~ki~eLE~~l~~~R~~~~~ 96 (284)
+..++..|+..+++|..-.+.
T Consensus 18 l~~~~~~l~~~~~e~~~~~~~ 38 (129)
T cd00584 18 LQQELARLNEAIAEYEQAKET 38 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433
No 226
>KOG4787|consensus
Probab=33.36 E-value=2.2e+02 Score=30.70 Aligned_cols=57 Identities=16% Similarity=0.169 Sum_probs=39.3
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccceeeeeecccCHHH
Q psy9275 71 APPGSDRAKLEVLEKVIEGYRQRMEHIEADQGLVCVIPGQNSEKVAQQKVQELQMEADNNRET 133 (284)
Q Consensus 71 ~~~~~l~~ki~eLE~~l~~~R~~~~~~~~~l~~~~lE~~~~~g~~~~~~tkvlIL~lr~NP~a 133 (284)
.|-++....|..++..+++.|+-.-.-+ . .++. .++-++++...+++||++|-|-..
T Consensus 430 ~~~~s~~~Ei~~~QA~M~E~~Dt~~~~d--V--~~~~--sL~~~LeqAsK~CRIL~~RL~K~~ 486 (852)
T KOG4787|consen 430 VPSGTTTTELRKEQAQMNELKDTVFKSD--V--QKVI--SLATKLEQANKQCRILNERLNKLH 486 (852)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHH--H--HHHH--HHHHHHHHHhchhHHHHHHHhHHH
Confidence 5666788888889988888887764422 1 1111 125667777888999999999833
No 227
>KOG0946|consensus
Probab=33.34 E-value=7.2e+02 Score=27.88 Aligned_cols=26 Identities=12% Similarity=0.239 Sum_probs=16.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy9275 165 KLNNKIKSLELQGKRLREVYKAASQE 190 (284)
Q Consensus 165 ~Lk~qi~~~eKr~~RLKEVF~~Ks~E 190 (284)
+......++.+..+++|+--.++...
T Consensus 803 e~~~~l~~~q~e~~~~keq~~t~~~~ 828 (970)
T KOG0946|consen 803 EESTRLQELQSELTQLKEQIQTLLER 828 (970)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445666677777777776665544
No 228
>PF05678 VQ: VQ motif; InterPro: IPR008889 This short motif is found in a variety of plant proteins. These proteins vary greatly in length and are mostly composed of low complexity regions. They all conserve a short motif FXhVQChTG, where X is any amino acid and h is a hydrophobic amino acid. The function of this motif is uncertain, however one protein in this family has been found to bind the SigA sigma factor Q9LDH1 from SWISSPROT. It would seem plausible that this motif is needed for this activity and that this whole family might be involved in modulating plastid sigma factors.
Probab=33.22 E-value=32 Score=22.46 Aligned_cols=16 Identities=31% Similarity=0.374 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHhhce
Q psy9275 186 AASQEFRETVYLLFGY 201 (284)
Q Consensus 186 ~Ks~EFReav~~LlGY 201 (284)
....+||+.|..|+|-
T Consensus 10 ~d~~~Fr~lVQ~LTG~ 25 (31)
T PF05678_consen 10 TDPSNFRALVQRLTGA 25 (31)
T ss_pred eCHHHHHHHHHHhHCc
Confidence 3467999999999995
No 229
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=33.20 E-value=2e+02 Score=21.82 Aligned_cols=16 Identities=19% Similarity=0.131 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHH
Q psy9275 139 GMQKLNSKIKSLELQG 154 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l 154 (284)
+...|+.||+.|+..+
T Consensus 48 e~~~Lk~E~e~L~~el 63 (69)
T PF14197_consen 48 ENNKLKEENEALRKEL 63 (69)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555555555443
No 230
>KOG3208|consensus
Probab=33.13 E-value=2.3e+02 Score=26.66 Aligned_cols=103 Identities=16% Similarity=0.136 Sum_probs=51.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccceeeeeecccCHHHHHHHHHHHHHHHHHHHHHHH
Q psy9275 74 GSDRAKLEVLEKVIEGYRQRMEHIEADQGLVCVIPGQNSEKVAQQKVQELQMEADNNRETVKQMAGMQKLNSKIKSLELQ 153 (284)
Q Consensus 74 ~~l~~ki~eLE~~l~~~R~~~~~~~~~l~~~~lE~~~~~g~~~~~~tkvlIL~lr~NP~a~~~~~~le~Lk~ENe~L~~~ 153 (284)
++++++-..||-.+|..=-..+.+.+. .+|-|+-..+.+. . . ++ ....+-.|++.|+++
T Consensus 8 e~LRkqArslE~~ld~kL~syskl~as----------~~gg~~~~~s~~~----~--~---~~--s~ks~~~eie~LLeq 66 (231)
T KOG3208|consen 8 EALRKQARSLENQLDSKLVSYSKLGAS----------THGGYDIDTSPLS----G--S---DR--SFKSLENEIEGLLEQ 66 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc----------cCCCCCCCccccc----C--c---Cc--chhhhHHHHHHHHHH
Confidence 478888888886655433222322211 1344544433221 1 0 00 234455666666666
Q ss_pred HhhhhhH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9275 154 GKRLREV-YKAAKLNNKIKSLELQGKRLREVYKAASQEFRETVYL 197 (284)
Q Consensus 154 l~~~e~~-~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFReav~~ 197 (284)
+..+.+. .+.+..=+--+..--..+|=+|+-+.--+|||.++..
T Consensus 67 l~~vndsm~~~~~s~a~~aa~~htL~RHrEILqdy~qef~rir~n 111 (231)
T KOG3208|consen 67 LQDVNDSMNDCASSPANSAAVMHTLQRHREILQDYTQEFRRIRSN 111 (231)
T ss_pred HHHHHHHHHhhccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655432 1100011111233344566777777777788877765
No 231
>PF05414 DUF1717: Viral domain of unknown function (DUF1717); InterPro: IPR008745 The domain is found towards the N terminus of the polyprotein of Apple stem grooving virus (strain P-209) (ASGV), Citrus tatter leaf virus and from Apple stem grooving virus (strain Korea) (ASGV) (Pear black necrotic leaf spot virus). Its function is unknown [, ].
Probab=33.12 E-value=50 Score=26.76 Aligned_cols=20 Identities=25% Similarity=0.394 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhhceEEEee
Q psy9275 187 ASQEFRETVYLLFGYKVDRT 206 (284)
Q Consensus 187 Ks~EFReav~~LlGYkIdf~ 206 (284)
-|.+..++|+..+||+|-+.
T Consensus 27 iSskllE~cc~flgyrVhiy 46 (101)
T PF05414_consen 27 ISSKLLEICCKFLGYRVHIY 46 (101)
T ss_pred ccHHHHHHHHhhcccEEEEE
Confidence 46788899999999999988
No 232
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=33.11 E-value=1.1e+02 Score=30.57 Aligned_cols=29 Identities=21% Similarity=0.274 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q psy9275 139 GMQKLNSKIKSLELQGKRLREVYKAAKLNNK 169 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~~E~~~Lk~q 169 (284)
+.-+||.||.+|++....+. .++..|+.+
T Consensus 33 e~~aLr~EN~~LKkEN~~Lk--~eVerLE~e 61 (420)
T PF07407_consen 33 ENFALRMENHSLKKENNDLK--IEVERLENE 61 (420)
T ss_pred hhhhHHHHhHHHHHHHHHHH--HHHHHHHHH
Confidence 56789999999985544333 344444443
No 233
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=32.84 E-value=4.8e+02 Score=25.52 Aligned_cols=28 Identities=21% Similarity=0.302 Sum_probs=24.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy9275 74 GSDRAKLEVLEKVIEGYRQRMEHIEADQ 101 (284)
Q Consensus 74 ~~l~~ki~eLE~~l~~~R~~~~~~~~~l 101 (284)
+.|.+|+..||++-..+|++...+..+-
T Consensus 163 e~Lq~Klk~LEeEN~~LR~Ea~~L~~et 190 (306)
T PF04849_consen 163 EALQEKLKSLEEENEQLRSEASQLKTET 190 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 5799999999999999999998877554
No 234
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=32.73 E-value=2.7e+02 Score=30.24 Aligned_cols=30 Identities=17% Similarity=0.307 Sum_probs=24.8
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy9275 73 PGSDRAKLEVLEKVIEGYRQRMEHIEADQG 102 (284)
Q Consensus 73 ~~~l~~ki~eLE~~l~~~R~~~~~~~~~l~ 102 (284)
-+.+..||.+||..+...|..+.....+.+
T Consensus 29 E~~~~~~i~~l~~elk~~~~~~~~~~~e~~ 58 (717)
T PF09730_consen 29 EAYLQQRILELENELKQLRQELSNVQAENE 58 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346899999999999999988888777664
No 235
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=32.57 E-value=2.5e+02 Score=22.12 Aligned_cols=55 Identities=16% Similarity=0.202 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhH-------HHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHH
Q psy9275 139 GMQKLNSKIKSLELQGKRLREV-------YKAAKLNNKIKSLELQG-KRLREVYKAASQEFRE 193 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~-------~E~~~Lk~qi~~~eKr~-~RLKEVF~~Ks~EFRe 193 (284)
++..|+.+|+.|...++.+... .|+..|+.+++.+=++. .|=.+++...+...+.
T Consensus 20 e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ 82 (100)
T PF01486_consen 20 EIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKK 82 (100)
T ss_pred HHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999888876643 67777777775543333 2334445554544443
No 236
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=32.41 E-value=2.1e+02 Score=21.19 Aligned_cols=28 Identities=18% Similarity=0.337 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy9275 161 YKAAKLNNKIKSLELQGKRLREVYKAAS 188 (284)
Q Consensus 161 ~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks 188 (284)
.|..++++.++..+...++|..+|---+
T Consensus 21 ~en~~i~~~ve~i~envk~ll~lYE~Vs 48 (55)
T PF05377_consen 21 KENEEISESVEKIEENVKDLLSLYEVVS 48 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555566666666665443
No 237
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=32.40 E-value=3.4e+02 Score=24.21 Aligned_cols=19 Identities=21% Similarity=0.379 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q psy9275 140 MQKLNSKIKSLELQGKRLR 158 (284)
Q Consensus 140 le~Lk~ENe~L~~~l~~~e 158 (284)
.++|+.|++.|..++..++
T Consensus 106 ~~~l~~e~~~l~~~~e~Le 124 (161)
T TIGR02894 106 NERLKNQNESLQKRNEELE 124 (161)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444433
No 238
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=32.37 E-value=3.3e+02 Score=24.55 Aligned_cols=32 Identities=22% Similarity=0.343 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy9275 161 YKAAKLNNKIKSLELQGKRLREVYKAASQEFR 192 (284)
Q Consensus 161 ~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFR 192 (284)
..++.++.++...+++++-|.---.-....|+
T Consensus 125 ~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~ 156 (194)
T PF15619_consen 125 RKLSQLEQKLQEKEKKIQELEKQLELENKSFR 156 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 34555566666666666655544333344443
No 239
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=32.36 E-value=2.3e+02 Score=24.85 Aligned_cols=30 Identities=17% Similarity=0.216 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy9275 161 YKAAKLNNKIKSLELQGKRLREVYKAASQE 190 (284)
Q Consensus 161 ~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~E 190 (284)
.|+.+++++++.+++-...||.--..-..|
T Consensus 161 ~ei~~lk~el~~~~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 161 EEIEKLKKELEKKEKEIEALKKQSEGLQKE 190 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 567777777777777777776654444333
No 240
>PRK00846 hypothetical protein; Provisional
Probab=32.15 E-value=2.4e+02 Score=22.10 Aligned_cols=22 Identities=14% Similarity=0.021 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh
Q psy9275 138 AGMQKLNSKIKSLELQGKRLRE 159 (284)
Q Consensus 138 ~~le~Lk~ENe~L~~~l~~~e~ 159 (284)
..++.|+.....|..+++.++.
T Consensus 41 ~~I~~L~~ql~~L~~rL~~~~~ 62 (77)
T PRK00846 41 LTGARNAELIRHLLEDLGKVRS 62 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 3688888888888888877653
No 241
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=31.96 E-value=64 Score=28.72 Aligned_cols=19 Identities=16% Similarity=0.270 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q psy9275 139 GMQKLNSKIKSLELQGKRL 157 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~ 157 (284)
+-+.|+.|+++|+..++.+
T Consensus 25 EKE~L~~~~QRLkDE~RDL 43 (166)
T PF04880_consen 25 EKENLREEVQRLKDELRDL 43 (166)
T ss_dssp HHHHHHHCH----------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5666777777777555543
No 242
>PF05588 Botulinum_HA-17: Clostridium botulinum HA-17 protein; InterPro: IPR008903 This family consists of several Clostridium botulinum haemagglutinin (HA) subcomponents. C. botulinum type D strain 4947 produces two different sizes of progenitor toxins (M and L) as intact forms without proteolytic processing. The M toxin is composed of neurotoxin (NT) and nontoxic-nonhaemagglutinin (NTNHA), whereas the L toxin is composed of the M toxin and haemagglutinin (HA) subcomponents (HA-70, HA-17, and HA-33) [].; PDB: 2E4M_C.
Probab=31.92 E-value=62 Score=27.99 Aligned_cols=29 Identities=24% Similarity=0.462 Sum_probs=21.3
Q ss_pred ee-CCeeEEEeeccCCCCCceEEEecCCeeeeeC
Q psy9275 205 RT-NCMYKLASMYADGPDENLLFQSTEGQLNLIE 237 (284)
Q Consensus 205 f~-ng~~rL~S~Ya~s~ed~LvF~~~~G~mkll~ 237 (284)
|. +|.|++.|+|. ++|.|.+.+|.+.+..
T Consensus 7 flp~gny~iks~fs----~sLyl~~vSg~lSfsn 36 (146)
T PF05588_consen 7 FLPNGNYKIKSIFS----TSLYLTPVSGNLSFSN 36 (146)
T ss_dssp ---SEEEEEEESS-----SSEEEEE-SS-EEEEE
T ss_pred ecCCCCeeEeeeec----CcEEEEeecceEEecc
Confidence 55 99999999997 6899999999887765
No 243
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=31.67 E-value=1.4e+02 Score=20.89 Aligned_cols=8 Identities=25% Similarity=0.542 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q psy9275 164 AKLNNKIK 171 (284)
Q Consensus 164 ~~Lk~qi~ 171 (284)
..|+++|.
T Consensus 29 ~~L~aev~ 36 (45)
T PF02183_consen 29 EKLRAEVQ 36 (45)
T ss_pred HHHHHHHH
Confidence 33444433
No 244
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=31.36 E-value=84 Score=23.60 Aligned_cols=17 Identities=24% Similarity=0.458 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy9275 139 GMQKLNSKIKSLELQGK 155 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~ 155 (284)
+|..|.+|+++|+.+-.
T Consensus 22 tL~~LH~EIe~Lq~~~~ 38 (60)
T PF14916_consen 22 TLKGLHAEIERLQKRNK 38 (60)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 56666666666665543
No 245
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=31.26 E-value=1.5e+02 Score=27.49 Aligned_cols=46 Identities=24% Similarity=0.283 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy9275 139 GMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRLREVYKA 186 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi~~~eKr~~RLKEVF~~ 186 (284)
.++.++++...+...+..+. ..+..|+.+|...+.+..=++--++.
T Consensus 100 ~~~~~~~~~~~~~~~~~~l~--~~~~~Le~Ki~e~~~~~~~l~ar~~~ 145 (225)
T COG1842 100 LAKALEAELQQAEEQVEKLK--KQLAALEQKIAELRAKKEALKARKAA 145 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555544444 45666777777776666666655544
No 246
>KOG4572|consensus
Probab=31.20 E-value=81 Score=35.08 Aligned_cols=29 Identities=10% Similarity=0.057 Sum_probs=23.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy9275 75 SDRAKLEVLEKVIEGYRQRMEHIEADQGL 103 (284)
Q Consensus 75 ~l~~ki~eLE~~l~~~R~~~~~~~~~l~~ 103 (284)
+..+.+.++|.+....|..++...++++.
T Consensus 992 a~aRh~kefE~~mrdhrselEe~kKe~ea 1020 (1424)
T KOG4572|consen 992 AFARHEKEFEIEMRDHRSELEEKKKELEA 1020 (1424)
T ss_pred HHHHHHHHHHHHHHHhHhhHHHHHHHHHH
Confidence 46778889999999999999888888764
No 247
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=31.17 E-value=1.3e+02 Score=28.31 Aligned_cols=19 Identities=16% Similarity=0.081 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q psy9275 139 GMQKLNSKIKSLELQGKRL 157 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~ 157 (284)
+++.|++.|-.|=++++=+
T Consensus 115 Ev~~L~~DN~kLYEKiRyl 133 (248)
T PF08172_consen 115 EVESLRADNVKLYEKIRYL 133 (248)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6777888888887776544
No 248
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=30.89 E-value=4.2e+02 Score=24.28 Aligned_cols=14 Identities=29% Similarity=0.214 Sum_probs=7.3
Q ss_pred hHHHHHHHhhcccc
Q psy9275 52 TYQMEWRALKGNAT 65 (284)
Q Consensus 52 ~~e~e~~~lk~~~~ 65 (284)
+++.|+.-||..+.
T Consensus 64 ~l~eEledLk~~~~ 77 (193)
T PF14662_consen 64 ALEEELEDLKTLAK 77 (193)
T ss_pred HHHHHHHHHHHHHH
Confidence 45555555555543
No 249
>PF13166 AAA_13: AAA domain
Probab=30.74 E-value=6.4e+02 Score=26.28 Aligned_cols=17 Identities=18% Similarity=0.276 Sum_probs=12.3
Q ss_pred hceEEEee--CCeeEEEee
Q psy9275 199 FGYKVDRT--NCMYKLASM 215 (284)
Q Consensus 199 lGYkIdf~--ng~~rL~S~ 215 (284)
-+++|++. .+.|+|..-
T Consensus 474 ~~~~l~~~~~~~~y~l~~~ 492 (712)
T PF13166_consen 474 SNFSLEIVDDDKGYKLQRK 492 (712)
T ss_pred CCeEEEEecCCCeEEEEEC
Confidence 46788877 567888774
No 250
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=30.52 E-value=3.7e+02 Score=27.46 Aligned_cols=49 Identities=18% Similarity=0.103 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhH-----HHHHHHHHHHHhHHHHHHHHHHHH
Q psy9275 136 QMAGMQKLNSKIKSLELQGKRLREV-----YKAAKLNNKIKSLELQGKRLREVY 184 (284)
Q Consensus 136 ~~~~le~Lk~ENe~L~~~l~~~e~~-----~E~~~Lk~qi~~~eKr~~RLKEVF 184 (284)
....+..|+.+...++.++..+... ..+..++.+|..+++.+...+.-+
T Consensus 284 ~~~lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l~~rI~aLe~QIa~er~kl 337 (434)
T PRK15178 284 IYQLIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRLSAKIKVLEKQIGEQRNRL 337 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHh
Confidence 3345667777777777666655432 456666666666666655554444
No 251
>KOG0161|consensus
Probab=30.44 E-value=4.5e+02 Score=31.99 Aligned_cols=26 Identities=23% Similarity=0.190 Sum_probs=11.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy9275 170 IKSLELQGKRLREVYKAASQEFRETV 195 (284)
Q Consensus 170 i~~~eKr~~RLKEVF~~Ks~EFReav 195 (284)
.-..+..+..|+.-.+..+.+..+.+
T Consensus 1173 ~~~~e~~~~~lr~~~~~~~~el~~ql 1198 (1930)
T KOG0161|consen 1173 TLDHEAQIEELRKKHADSLAELQEQL 1198 (1930)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443333
No 252
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=30.39 E-value=1.7e+02 Score=21.30 Aligned_cols=14 Identities=21% Similarity=0.351 Sum_probs=6.1
Q ss_pred HHHHHHHHHH-hhce
Q psy9275 188 SQEFRETVYL-LFGY 201 (284)
Q Consensus 188 s~EFReav~~-LlGY 201 (284)
+.+|.+-+.. -+||
T Consensus 53 ~~~~ie~~AR~~lgm 67 (80)
T PF04977_consen 53 DPDYIEKVAREKLGM 67 (80)
T ss_pred CHHHHHHHHHHHcCC
Confidence 3344433333 4565
No 253
>KOG0243|consensus
Probab=30.03 E-value=6.1e+02 Score=28.91 Aligned_cols=21 Identities=33% Similarity=0.472 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhh
Q psy9275 139 GMQKLNSKIKSLELQGKRLRE 159 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~ 159 (284)
.++.|..|.+.+..++..+.+
T Consensus 449 ~ieele~el~~~~~~l~~~~e 469 (1041)
T KOG0243|consen 449 QIEELEEELENLEKQLKDLTE 469 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444433
No 254
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=29.73 E-value=1.1e+02 Score=21.85 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=19.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHH
Q psy9275 163 AAKLNNKIKSLELQGKRLREVYKA 186 (284)
Q Consensus 163 ~~~Lk~qi~~~eKr~~RLKEVF~~ 186 (284)
++.|+.|+..++.+.++|...|..
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~~fs~ 24 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQAAFSQ 24 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888888888888888888876
No 255
>KOG4807|consensus
Probab=29.60 E-value=3.2e+02 Score=28.14 Aligned_cols=27 Identities=15% Similarity=0.219 Sum_probs=22.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy9275 75 SDRAKLEVLEKVIEGYRQRMEHIEADQ 101 (284)
Q Consensus 75 ~l~~ki~eLE~~l~~~R~~~~~~~~~l 101 (284)
.|+++|++|+..++..|.+.+-++.++
T Consensus 295 ~L~k~vQ~L~AQle~~R~q~e~~q~~~ 321 (593)
T KOG4807|consen 295 ALEKEVQALRAQLEAWRLQGEAPQSAL 321 (593)
T ss_pred HHHHHHHHHHHHHHHHHHhccCchhhH
Confidence 599999999999999998886666555
No 256
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=29.58 E-value=2.4e+02 Score=20.94 Aligned_cols=57 Identities=12% Similarity=0.203 Sum_probs=39.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccceeeeeecccCHHHHHHHH-HHHHHHHHHHHHHH
Q psy9275 74 GSDRAKLEVLEKVIEGYRQRMEHIEADQGLVCVIPGQNSEKVAQQKVQELQMEADNNRETVKQMA-GMQKLNSKIKSLEL 152 (284)
Q Consensus 74 ~~l~~ki~eLE~~l~~~R~~~~~~~~~l~~~~lE~~~~~g~~~~~~tkvlIL~lr~NP~a~~~~~-~le~Lk~ENe~L~~ 152 (284)
+.-...|.+.|..|+...+.+..++-++. ..+|..+.... .+...+.+...|..
T Consensus 21 ~~r~~~i~~~e~~l~ea~~~l~qMe~E~~-------------------------~~p~s~r~~~~~kl~~yr~~l~~lk~ 75 (79)
T PF05008_consen 21 EQRKSLIREIERDLDEAEELLKQMELEVR-------------------------SLPPSERNQYKSKLRSYRSELKKLKK 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------------------------TS-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------hCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778889999999999999999777762 12334444443 67777777777776
Q ss_pred HHh
Q psy9275 153 QGK 155 (284)
Q Consensus 153 ~l~ 155 (284)
.++
T Consensus 76 ~l~ 78 (79)
T PF05008_consen 76 ELK 78 (79)
T ss_dssp HHH
T ss_pred Hhc
Confidence 654
No 257
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=29.33 E-value=6.1e+02 Score=25.62 Aligned_cols=36 Identities=14% Similarity=-0.000 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9275 161 YKAAKLNNKIKSLELQGKRLREVYKAASQEFRETVY 196 (284)
Q Consensus 161 ~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFReav~ 196 (284)
.|+..|+.+++..|-|++=.-.-...-+.|..+.|.
T Consensus 276 ~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~q 311 (395)
T PF10267_consen 276 NEIYNLKQELASMEEKMAYQSYERARDIWEVMESCQ 311 (395)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 566666666666666555333333333444444444
No 258
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=29.32 E-value=1.3e+02 Score=27.86 Aligned_cols=17 Identities=12% Similarity=0.108 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy9275 139 GMQKLNSKIKSLELQGK 155 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~ 155 (284)
+++.|++||++|++.+.
T Consensus 94 ~~~~l~~en~~L~~lL~ 110 (276)
T PRK13922 94 ELEQLEAENARLRELLN 110 (276)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 34556666666665543
No 259
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=29.11 E-value=4.9e+02 Score=25.54 Aligned_cols=22 Identities=14% Similarity=0.164 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhH
Q psy9275 139 GMQKLNSKIKSLELQGKRLREV 160 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~ 160 (284)
-+..|+.|+.+|++++...+..
T Consensus 230 hI~~Lr~EV~RLR~qL~~sq~e 251 (310)
T PF09755_consen 230 HIRSLRQEVSRLRQQLAASQQE 251 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6888999999999999987765
No 260
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=29.06 E-value=4.7e+02 Score=24.28 Aligned_cols=84 Identities=18% Similarity=0.162 Sum_probs=48.6
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccceeeeeecccCHHHHHHHH-HHHHHHHHHHHHH
Q psy9275 73 PGSDRAKLEVLEKVIEGYRQRMEHIEADQGLVCVIPGQNSEKVAQQKVQELQMEADNNRETVKQMA-GMQKLNSKIKSLE 151 (284)
Q Consensus 73 ~~~l~~ki~eLE~~l~~~R~~~~~~~~~l~~~~lE~~~~~g~~~~~~tkvlIL~lr~NP~a~~~~~-~le~Lk~ENe~L~ 151 (284)
++.++.|+.+||+..+...+.++.++.+- .+..... +++.|..|=....
T Consensus 3 i~~ir~K~~~lek~k~~i~~e~~~~e~ee------------------------------~~L~e~~kE~~~L~~Er~~h~ 52 (230)
T PF10146_consen 3 IKEIRNKTLELEKLKNEILQEVESLENEE------------------------------KCLEEYRKEMEELLQERMAHV 52 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------HHHHHHHHHHHHHHHHHHHHH
Confidence 34577777888876666666665544332 1112222 5666777766666
Q ss_pred HHHhhhhhH-----HHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy9275 152 LQGKRLREV-----YKAAKLNNKIKSLELQGKRLREVYKA 186 (284)
Q Consensus 152 ~~l~~~e~~-----~E~~~Lk~qi~~~eKr~~RLKEVF~~ 186 (284)
+.|+....+ ..+.+.+.+-........|+-+.|..
T Consensus 53 eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~ 92 (230)
T PF10146_consen 53 EELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKP 92 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666665543 33455555555555666666666655
No 261
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=28.97 E-value=6e+02 Score=25.46 Aligned_cols=35 Identities=14% Similarity=0.239 Sum_probs=27.8
Q ss_pred ceEEEee-CCeeEEEeeccCCCCCceEEEecCCeeee
Q psy9275 200 GYKVDRT-NCMYKLASMYADGPDENLLFQSTEGQLNL 235 (284)
Q Consensus 200 GYkIdf~-ng~~rL~S~Ya~s~ed~LvF~~~~G~mkl 235 (284)
||-|-.. +|+ -|+|.=.-+++|.|.....+|.++.
T Consensus 395 GYai~~~~~g~-~v~s~~~l~~gd~l~i~~~dG~~~a 430 (432)
T TIGR00237 395 GYSIALNEKGK-AIKSVKQVDRGDRLTTKLKDGVITS 430 (432)
T ss_pred ceEEEEecCCC-EecCHHHCCCCCEEEEEECCeEEEE
Confidence 9999876 776 5677777778899998888887654
No 262
>PF14282 FlxA: FlxA-like protein
Probab=28.88 E-value=2.2e+02 Score=23.00 Aligned_cols=48 Identities=23% Similarity=0.268 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhH---------HHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy9275 139 GMQKLNSKIKSLELQGKRLREV---------YKAAKLNNKIKSLELQGKRLREVYKA 186 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~---------~E~~~Lk~qi~~~eKr~~RLKEVF~~ 186 (284)
.++.|+..++.|..+|..+..+ .....|+.+|..++-.+.+|..-=..
T Consensus 20 ~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~ 76 (106)
T PF14282_consen 20 QIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAE 76 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777777777666652 33667788888888888777554333
No 263
>KOG4809|consensus
Probab=28.83 E-value=2.4e+02 Score=29.96 Aligned_cols=28 Identities=25% Similarity=0.338 Sum_probs=20.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy9275 75 SDRAKLEVLEKVIEGYRQRMEHIEADQG 102 (284)
Q Consensus 75 ~l~~ki~eLE~~l~~~R~~~~~~~~~l~ 102 (284)
.+..+...||-+|..-..+...++.+|.
T Consensus 377 k~ds~Lk~leIalEqkkEec~kme~qLk 404 (654)
T KOG4809|consen 377 KRDSKLKSLEIALEQKKEECSKMEAQLK 404 (654)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777777787877777777773
No 264
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=28.68 E-value=6e+02 Score=25.30 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=17.8
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHH
Q psy9275 71 APPGSDRAKLEVLEKVIEGYRQRM 94 (284)
Q Consensus 71 ~~~~~l~~ki~eLE~~l~~~R~~~ 94 (284)
...+.+..++.+||..++.++.+.
T Consensus 247 ~~~~~l~~~l~~l~~~l~~l~~~y 270 (498)
T TIGR03007 247 VANSELDGRIEALEKQLDALRLRY 270 (498)
T ss_pred cCCCchHHHHHHHHHHHHHHHHHh
Confidence 345578889999998888776543
No 265
>KOG0999|consensus
Probab=28.62 E-value=6e+02 Score=27.36 Aligned_cols=113 Identities=19% Similarity=0.234 Sum_probs=59.4
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHhhcccccccc---cccccccccccceeeeeecccCH-H--HH-HHH-HHHHHHH
Q psy9275 73 PGSDRAKLEVLEKVIEGYRQRMEHIEADQGLVCVIP---GQNSEKVAQQKVQELQMEADNNR-E--TV-KQM-AGMQKLN 144 (284)
Q Consensus 73 ~~~l~~ki~eLE~~l~~~R~~~~~~~~~l~~~~lE~---~~~~g~~~~~~tkvlIL~lr~NP-~--a~-~~~-~~le~Lk 144 (284)
...+-.||-+||..|...|+.+.....+++.+.-.. .....++...+- .||+-- + ++ +|+ ++-..|.
T Consensus 102 E~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~-----rlr~elKe~KfRE~RllseYSELE 176 (772)
T KOG0999|consen 102 EEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRR-----RLRDELKEYKFREARLLSEYSELE 176 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335888999999999999998887776664110000 000111111111 122221 1 11 122 3555666
Q ss_pred HHHHHHHHHHhhhhhH--------HHHHHHHHHHHhHHHH---HHHHHHHHHHHHHH
Q psy9275 145 SKIKSLELQGKRLREV--------YKAAKLNNKIKSLELQ---GKRLREVYKAASQE 190 (284)
Q Consensus 145 ~ENe~L~~~l~~~e~~--------~E~~~Lk~qi~~~eKr---~~RLKEVF~~Ks~E 190 (284)
+||=.|..++..+... +|+..|..+++-++-. ..|||+|--+...|
T Consensus 177 EENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln~q~ee~~~Lk~IAekQlEE 233 (772)
T KOG0999|consen 177 EENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQLEEAIRLKEIAEKQLEE 233 (772)
T ss_pred HhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777666665543 5566666654433332 34777776655443
No 266
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=28.46 E-value=3.1e+02 Score=22.76 Aligned_cols=52 Identities=12% Similarity=0.072 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccceeeeeecccCHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9275 76 DRAKLEVLEKVIEGYRQRMEHIEADQGLVCVIPGQNSEKVAQQKVQELQMEADNNRETVKQMAGMQKLNSKIKSLELQGK 155 (284)
Q Consensus 76 l~~ki~eLE~~l~~~R~~~~~~~~~l~~~~lE~~~~~g~~~~~~tkvlIL~lr~NP~a~~~~~~le~Lk~ENe~L~~~l~ 155 (284)
+-.++..||..+...-.++..+++.+. .=.++-.+|+-||+.|+.++.
T Consensus 6 lfd~l~~le~~l~~l~~el~~LK~~~~--------------------------------el~EEN~~L~iEN~~Lr~~l~ 53 (110)
T PRK13169 6 IFDALDDLEQNLGVLLKELGALKKQLA--------------------------------ELLEENTALRLENDKLRERLE 53 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------------HHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhh
Q psy9275 156 RLRE 159 (284)
Q Consensus 156 ~~e~ 159 (284)
..+.
T Consensus 54 ~~~~ 57 (110)
T PRK13169 54 ELEA 57 (110)
T ss_pred Hhhc
No 267
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=28.27 E-value=5.8e+02 Score=25.04 Aligned_cols=22 Identities=18% Similarity=0.292 Sum_probs=16.8
Q ss_pred HHHH-HHHHHHHHHHHHHHHHhh
Q psy9275 135 KQMA-GMQKLNSKIKSLELQGKR 156 (284)
Q Consensus 135 ~~~~-~le~Lk~ENe~L~~~l~~ 156 (284)
.++- .++.|.+|+..|..+|..
T Consensus 181 N~L~Kqm~~l~~eKr~Lq~~l~~ 203 (310)
T PF09755_consen 181 NRLWKQMDKLEAEKRRLQEKLEQ 203 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc
Confidence 3553 788888888888888774
No 268
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=28.06 E-value=2.7e+02 Score=21.13 Aligned_cols=38 Identities=18% Similarity=0.083 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHH
Q psy9275 139 GMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGK 178 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi~~~eKr~~ 178 (284)
.+..|..|++....++...- .+..+|+.+++.+.+.+.
T Consensus 27 ~~k~L~~ERd~~~~~l~~a~--~e~~~Lk~E~e~L~~el~ 64 (69)
T PF14197_consen 27 ENKRLRRERDSAERQLGDAY--EENNKLKEENEALRKELE 64 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 34455556665555554322 445556666655555543
No 269
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=27.97 E-value=3.1e+02 Score=21.76 Aligned_cols=16 Identities=31% Similarity=0.464 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHH
Q psy9275 139 GMQKLNSKIKSLELQG 154 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l 154 (284)
.++.+..+.+.+..++
T Consensus 71 ~~e~le~~i~~l~~~~ 86 (105)
T cd00632 71 RLETIELRIKRLERQE 86 (105)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444333
No 270
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=27.96 E-value=3.6e+02 Score=22.57 Aligned_cols=47 Identities=26% Similarity=0.358 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhH-----HHHHHHHHHHHhHHHHHHHHHHHHH
Q psy9275 139 GMQKLNSKIKSLELQGKRLREV-----YKAAKLNNKIKSLELQGKRLREVYK 185 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~-----~E~~~Lk~qi~~~eKr~~RLKEVF~ 185 (284)
+++.|...+++|..++...+.. .....++.++.+++..+...++-++
T Consensus 67 d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~ 118 (151)
T PF11559_consen 67 DIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQ 118 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444332 2233444444444444444444333
No 271
>PHA03162 hypothetical protein; Provisional
Probab=27.91 E-value=57 Score=28.24 Aligned_cols=23 Identities=26% Similarity=0.242 Sum_probs=19.4
Q ss_pred HHHH-HHHHHHHHHHHHHHHHhhh
Q psy9275 135 KQMA-GMQKLNSKIKSLELQGKRL 157 (284)
Q Consensus 135 ~~~~-~le~Lk~ENe~L~~~l~~~ 157 (284)
.++. +|..|+-||..|+.+++..
T Consensus 16 EeLaaeL~kLqmENK~LKkkl~~~ 39 (135)
T PHA03162 16 EDLAAEIAKLQLENKALKKKIKEG 39 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444 8999999999999999765
No 272
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=27.81 E-value=61 Score=33.38 Aligned_cols=48 Identities=19% Similarity=0.263 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHhhceEEEee----CCee---EEEeeccCCCCCceEEEecCCeeee
Q psy9275 187 ASQEFRETVYLLFGYKVDRT----NCMY---KLASMYADGPDENLLFQSTEGQLNL 235 (284)
Q Consensus 187 Ks~EFReav~~LlGYkIdf~----ng~~---rL~S~Ya~s~ed~LvF~~~~G~mkl 235 (284)
...+|..-+...|||.|+.+ +.++ =+.|.+.+ ..+-+++|..+|+.++
T Consensus 89 N~~eFl~rv~~~~G~~ievIsGeeEArl~~lGv~~~~~~-~~~~lv~DIGGGStEl 143 (492)
T COG0248 89 NGDEFLARVEKELGLPIEVISGEEEARLIYLGVASTLPR-KGDGLVIDIGGGSTEL 143 (492)
T ss_pred CHHHHHHHHHHHhCCceEEeccHHHHHHHHHHHHhcCCC-CCCEEEEEecCCeEEE
Confidence 35788889999999999998 2233 34556665 5678999999887666
No 273
>PF03954 Lectin_N: Hepatic lectin, N-terminal domain; InterPro: IPR005640 Animal lectins display a wide variety of architectures. They are classified according to the carbohydrate-recognition domain (CRD) of which there are two main types, S-type and C-type. C-type lectins display a wide range of specificities. They require Ca2+ for their activity They are found predominantly but not exclusively in vertebrates. This entry presents N-terminal domain, which is found in C-type lectins.; GO: 0005529 sugar binding, 0016020 membrane
Probab=27.56 E-value=1e+02 Score=26.84 Aligned_cols=59 Identities=20% Similarity=0.201 Sum_probs=35.9
Q ss_pred cccchhhhhhhHHHHHHHHhhhhhhhHHHHHHHhhcccccccCCCCCcchHHHHHHHHHHHHHHHHHHH
Q psy9275 27 LSSNRERERDELLREKELKEKVDHLTYQMEWRALKGNATFSESAAPPGSDRAKLEVLEKVIEGYRQRME 95 (284)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~~~lk~~~~~~e~~~~~~~l~~ki~eLE~~l~~~R~~~~ 95 (284)
+.|-...=++|+.-++|-+.+-... -.+|+++|.++.. .+-++|..||..++.-++++.
T Consensus 53 igsQ~~qlq~dl~tLretfsNFsss-t~aEvqaL~S~G~---------sl~~kVtSLea~lEkqqQeLk 111 (138)
T PF03954_consen 53 IGSQNSQLQRDLRTLRETFSNFSSS-TLAEVQALSSQGG---------SLQDKVTSLEAKLEKQQQELK 111 (138)
T ss_pred hcCccHHHHHHHHHHHHHHhcccHH-HHHHHHHHHhccc---------cHHhHcccHHHHHHHHHHHHh
Confidence 3344455566666667766655433 4578999988762 356677777755555554443
No 274
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=27.39 E-value=4.4e+02 Score=24.43 Aligned_cols=22 Identities=18% Similarity=0.258 Sum_probs=10.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHH
Q psy9275 163 AAKLNNKIKSLELQGKRLREVY 184 (284)
Q Consensus 163 ~~~Lk~qi~~~eKr~~RLKEVF 184 (284)
+...+.++..+++..+|.+..|
T Consensus 117 ~~~a~~~l~~a~~~~~r~~~L~ 138 (334)
T TIGR00998 117 LEQAREKLLQAELDLRRRVPLF 138 (334)
T ss_pred HHHHHHHHHHhHHHHHHHHHHH
Confidence 3344444444555555555544
No 275
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=27.38 E-value=2.9e+02 Score=26.62 Aligned_cols=62 Identities=18% Similarity=0.272 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhH-----HHHHHHHHHHHhHHHHHHHHHHH----------HHHHHHHHHHHHHHhhc
Q psy9275 139 GMQKLNSKIKSLELQGKRLREV-----YKAAKLNNKIKSLELQGKRLREV----------YKAASQEFRETVYLLFG 200 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~-----~E~~~Lk~qi~~~eKr~~RLKEV----------F~~Ks~EFReav~~LlG 200 (284)
.|...+.+...+..++..+... .+...++.++...+.|..|-... |...+..|......|.|
T Consensus 236 ~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l~~~~~~l~G 312 (344)
T PF12777_consen 236 QLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSEQIEELEEQLKNLVG 312 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHHHHHHHHHhcccHH
Confidence 4555555555555555555443 56777788888888887776554 55666677766666655
No 276
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=27.37 E-value=35 Score=34.68 Aligned_cols=47 Identities=17% Similarity=0.212 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhhceEEEeeCC----eeE---EEeeccCCCCCceEEEecCCeeee
Q psy9275 188 SQEFRETVYLLFGYKVDRTNC----MYK---LASMYADGPDENLLFQSTEGQLNL 235 (284)
Q Consensus 188 s~EFReav~~LlGYkIdf~ng----~~r---L~S~Ya~s~ed~LvF~~~~G~mkl 235 (284)
..+|.+.|...+|++|+..+| +|. +.+.... +++.+++|..+|++++
T Consensus 93 ~~~fl~~i~~~tGl~ievIsG~eEA~l~~~gv~~~l~~-~~~~lviDIGGGStEl 146 (496)
T PRK11031 93 ADEFLAKAQEILGCPVQVISGEEEARLIYQGVAHTTGG-ADQRLVVDIGGASTEL 146 (496)
T ss_pred HHHHHHHHHHHHCCCeEEeCHHHHHHHHHHhhhhccCC-CCCEEEEEecCCeeeE
Confidence 467999999999999999932 333 3333222 3457999999887766
No 277
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=27.31 E-value=9e+02 Score=26.92 Aligned_cols=75 Identities=12% Similarity=0.066 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccc-ccccccccccccccccceeeeeeccc-CHHHHH----HHHHHHHHHHHHHHHHH
Q psy9275 79 KLEVLEKVIEGYRQRMEHIEADQGL-VCVIPGQNSEKVAQQKVQELQMEADN-NRETVK----QMAGMQKLNSKIKSLEL 152 (284)
Q Consensus 79 ki~eLE~~l~~~R~~~~~~~~~l~~-~~lE~~~~~g~~~~~~tkvlIL~lr~-NP~a~~----~~~~le~Lk~ENe~L~~ 152 (284)
-++.|..+.+.+|.++..+...|-+ -..++.....+++-.- +.|++ |--... -+..++.|+.-|++|+.
T Consensus 388 A~QplrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El-----~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk 462 (861)
T PF15254_consen 388 AMQPLRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLEL-----FSLQSLNMSLQNQLQESLKSQELLQSKNEELLK 462 (861)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhh-----HHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHH
Confidence 3566667777777777666665531 0112222223333321 12322 432222 22377888888888776
Q ss_pred HHhhhh
Q psy9275 153 QGKRLR 158 (284)
Q Consensus 153 ~l~~~e 158 (284)
-+....
T Consensus 463 ~~e~q~ 468 (861)
T PF15254_consen 463 VIENQK 468 (861)
T ss_pred HHHHHH
Confidence 665544
No 278
>KOG1937|consensus
Probab=27.27 E-value=7.3e+02 Score=25.89 Aligned_cols=127 Identities=13% Similarity=0.086 Sum_probs=71.4
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccc---eeeeeecccCHHHHHHHHHHHHHHHHHHH
Q psy9275 73 PGSDRAKLEVLEKVIEGYRQRMEHIEADQGLVCVIPGQNSEKVAQQKV---QELQMEADNNRETVKQMAGMQKLNSKIKS 149 (284)
Q Consensus 73 ~~~l~~ki~eLE~~l~~~R~~~~~~~~~l~~~~lE~~~~~g~~~~~~t---kvlIL~lr~NP~a~~~~~~le~Lk~ENe~ 149 (284)
-..++.+|.|+-.++...++.+-.+..+--+.+.+.-..+|.++.+=. ..+-..-+.-|.+++..+-+.++..-|..
T Consensus 384 rk~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se~L~Rsfavtdellf~sakhddhvR~aykllt~iH~nc~e 463 (521)
T KOG1937|consen 384 RKVYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESEALNRSFAVTDELLFMSAKHDDHVRLAYKLLTRIHLNCME 463 (521)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHH
Confidence 335888888888777777766644332221111111111222221100 00101112344445544579999999999
Q ss_pred HHHHHhhhhhH-HHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy9275 150 LELQGKRLREV-YKAAKLNNKIKS--LELQGKRLREVYKAASQEFRETVYLLFG 200 (284)
Q Consensus 150 L~~~l~~~e~~-~E~~~Lk~qi~~--~eKr~~RLKEVF~~Ks~EFReav~~LlG 200 (284)
+.+.+...+.- .++-+|+.||.. ..+...-|.. ...-.+.||+-.-.|+|
T Consensus 464 i~E~i~~tg~~~revrdlE~qI~~E~~k~~l~slEk-l~~Dyqairqen~~L~~ 516 (521)
T KOG1937|consen 464 ILEMIRETGALKREVRDLESQIYVEEQKQYLKSLEK-LHQDYQAIRQENDQLFS 516 (521)
T ss_pred HHHHHHHcchHHHHHHHHHHHHhHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHH
Confidence 99999876655 788899998876 3333333322 23346778887777776
No 279
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=26.91 E-value=3.5e+02 Score=27.83 Aligned_cols=18 Identities=6% Similarity=0.130 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHhh
Q psy9275 139 GMQKLNSKIKSLELQGKR 156 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~ 156 (284)
.+..|..|...++..|..
T Consensus 338 ~v~~L~~eL~~~r~eLea 355 (522)
T PF05701_consen 338 EVSSLEAELNKTRSELEA 355 (522)
T ss_pred HHhhHHHHHHHHHHHHHH
Confidence 344455555555444433
No 280
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=26.85 E-value=1.8e+02 Score=23.20 Aligned_cols=20 Identities=35% Similarity=0.438 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q psy9275 76 DRAKLEVLEKVIEGYRQRME 95 (284)
Q Consensus 76 l~~ki~eLE~~l~~~R~~~~ 95 (284)
+..+..+|++.+...+.+..
T Consensus 32 v~~kLneLd~Li~eA~~r~~ 51 (109)
T PF03980_consen 32 VVEKLNELDKLIEEAKERKN 51 (109)
T ss_pred HHHHHHHHHHHHHHHHHhHh
Confidence 56666777766666665444
No 281
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=26.77 E-value=7.3e+02 Score=25.70 Aligned_cols=18 Identities=6% Similarity=0.132 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHhh
Q psy9275 139 GMQKLNSKIKSLELQGKR 156 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~ 156 (284)
+++.+.+..+.+...+..
T Consensus 356 eL~~Le~~~~~~~~~i~~ 373 (569)
T PRK04778 356 QLESLEKQYDEITERIAE 373 (569)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 455555555544444433
No 282
>PF04350 PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B.
Probab=26.74 E-value=1.2e+02 Score=24.55 Aligned_cols=54 Identities=20% Similarity=0.234 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHH--HHHHHHHHHHHh
Q psy9275 139 GMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRLREVYKA--ASQEFRETVYLL 198 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi~~~eKr~~RLKEVF~~--Ks~EFReav~~L 198 (284)
++..|+++......++ ..+..++++++..+++...+...+-. .+..|...++.+
T Consensus 7 ~~~~l~~~~~~~~~~~------~~l~~~~~~~~~~~~~l~~~~~~lP~~~~~~~ll~~l~~~ 62 (144)
T PF04350_consen 7 QIQQLQQELAQLKEKV------ANLEELKKQLEQLEQQLEELLKKLPAEEEIPSLLEDLNRL 62 (144)
T ss_dssp -----HHHHHHTGGG-------SSHHHHHHHHHHHHHHHHHHHHCTTGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH------HhHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 3444444444444333 34557888888888888888887743 466777666665
No 283
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=26.73 E-value=4.8e+02 Score=23.63 Aligned_cols=135 Identities=15% Similarity=0.187 Sum_probs=66.6
Q ss_pred hHHHHHHHhhcccccc-c--CCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccc-------cccccccce
Q psy9275 52 TYQMEWRALKGNATFS-E--SAAPPGSDRAKLEVLEKVIEGYRQRMEHIEADQGLVCVIPGQNS-------EKVAQQKVQ 121 (284)
Q Consensus 52 ~~e~e~~~lk~~~~~~-e--~~~~~~~l~~ki~eLE~~l~~~R~~~~~~~~~l~~~~lE~~~~~-------g~~~~~~tk 121 (284)
.+..++..+++...+. + +.-+...|..++......+...+..+......+....-.+.+.+ .....-..+
T Consensus 56 ~l~~~l~~l~~~~~~~~~~~~~~s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~ 135 (240)
T PF12795_consen 56 ELQKELEALKSQDAPSKEILANLSLEELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQ 135 (240)
T ss_pred HHHHHHHhhhccccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666651111 1 12455567888877777777777777776666643222222221 111111111
Q ss_pred eeeeeccc-CH--HHHH-HHH-HHHHHHHHHHHHHHHHhhhhhHHHHHH-----HHHHHHhHHHHHHHHHHHHHH
Q psy9275 122 ELQMEADN-NR--ETVK-QMA-GMQKLNSKIKSLELQGKRLREVYKAAK-----LNNKIKSLELQGKRLREVYKA 186 (284)
Q Consensus 122 vlIL~lr~-NP--~a~~-~~~-~le~Lk~ENe~L~~~l~~~e~~~E~~~-----Lk~qi~~~eKr~~RLKEVF~~ 186 (284)
+-.+.-.. .| .+.. .+. ++..|..+|.-|...+.....-.++.. +..++..++...+-|.+.-+.
T Consensus 136 L~~~~~~~~~~l~~a~~~~l~ae~~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln~ 210 (240)
T PF12795_consen 136 LQNLPPNGESPLSEAQRWLLQAELAALEAQIEMLEQELLSNNNRQELLQLQRDLLKARIQRLQQQLQALQNLLNQ 210 (240)
T ss_pred HhccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11000111 23 3332 333 788888888888777665554433332 333445555555555544433
No 284
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=26.70 E-value=3.2e+02 Score=21.49 Aligned_cols=87 Identities=16% Similarity=0.200 Sum_probs=47.1
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccc-ccccccceeeeeecccCHHHHHHHHHHHHHHHHHHHHH
Q psy9275 73 PGSDRAKLEVLEKVIEGYRQRMEHIEADQGLVCVIPGQNSE-KVAQQKVQELQMEADNNRETVKQMAGMQKLNSKIKSLE 151 (284)
Q Consensus 73 ~~~l~~ki~eLE~~l~~~R~~~~~~~~~l~~~~lE~~~~~g-~~~~~~tkvlIL~lr~NP~a~~~~~~le~Lk~ENe~L~ 151 (284)
.+.-....+.+...++.++.++..+...+- ...| +++.. ++ .+|..|....+.-.
T Consensus 7 ~~~~~~~~e~~~~e~~~L~~~~~~L~~~~R-------~~~GedL~~L-----------s~------~eL~~LE~~Le~aL 62 (100)
T PF01486_consen 7 TDLWDSQHEELQQEIAKLRKENESLQKELR-------HLMGEDLESL-----------SL------KELQQLEQQLESAL 62 (100)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHh-------cccccccccc-----------ch------HHHHHHHHhhhhhH
Confidence 445566677778888888888888776652 1122 22222 11 13445555555544
Q ss_pred HHHhhhhhH---HHHHHHHHHHHhHHHHHHHHHHH
Q psy9275 152 LQGKRLREV---YKAAKLNNKIKSLELQGKRLREV 183 (284)
Q Consensus 152 ~~l~~~e~~---~E~~~Lk~qi~~~eKr~~RLKEV 183 (284)
.+++.-... .++..|+.+...+...+..|+.-
T Consensus 63 ~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~~~ 97 (100)
T PF01486_consen 63 KRVRSRKDQLLMEQIEELKKKERELEEENNQLRQK 97 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444443322 44555555555555555555543
No 285
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=26.63 E-value=1.8e+02 Score=25.86 Aligned_cols=23 Identities=13% Similarity=0.144 Sum_probs=13.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHH
Q psy9275 74 GSDRAKLEVLEKVIEGYRQRMEH 96 (284)
Q Consensus 74 ~~l~~ki~eLE~~l~~~R~~~~~ 96 (284)
..+..-|.+++..+...+..+..
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a~ 48 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALAR 48 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666665555555544
No 286
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=26.41 E-value=4.3e+02 Score=27.37 Aligned_cols=44 Identities=11% Similarity=0.157 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhH--HHHHHHHHHHHhHHHHHHHHHH
Q psy9275 139 GMQKLNSKIKSLELQGKRLREV--YKAAKLNNKIKSLELQGKRLRE 182 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~--~E~~~Lk~qi~~~eKr~~RLKE 182 (284)
-+.=|++..+..+.++...+.. .+-..|+.+|..+..-+.++.+
T Consensus 141 ll~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~~n~~i~~ 186 (475)
T PRK10361 141 LLSPLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQLNAQMAQ 186 (475)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666677777776666543 4455666666665555555443
No 287
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=26.39 E-value=3.5e+02 Score=21.87 Aligned_cols=26 Identities=23% Similarity=0.436 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy9275 77 RAKLEVLEKVIEGYRQRMEHIEADQG 102 (284)
Q Consensus 77 ~~ki~eLE~~l~~~R~~~~~~~~~l~ 102 (284)
+..+.+|++.++....++..++..+.
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~ 59 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLE 59 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777788888777773
No 288
>KOG1962|consensus
Probab=26.26 E-value=2.2e+02 Score=26.51 Aligned_cols=46 Identities=20% Similarity=0.301 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy9275 139 GMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRLREVYKA 186 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi~~~eKr~~RLKEVF~~ 186 (284)
+++.|+.|.+.....+...+ .+...|++|.+.......||.|-++.
T Consensus 159 ~~~kL~~el~~~~~~Le~~~--~~~~al~Kq~e~~~~EydrLlee~~~ 204 (216)
T KOG1962|consen 159 DLEKLETELEKKQKKLEKAQ--KKVDALKKQSEGLQDEYDRLLEEYSK 204 (216)
T ss_pred hHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 34444444444433333322 55778888888888888888876554
No 289
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=26.06 E-value=3.6e+02 Score=21.85 Aligned_cols=59 Identities=8% Similarity=0.161 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhH-HH----HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy9275 136 QMAGMQKLNSKIKSLELQGKRLREV-YK----AAKLNNKIKSLELQGKRLREVYKAASQEFRET 194 (284)
Q Consensus 136 ~~~~le~Lk~ENe~L~~~l~~~e~~-~E----~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFRea 194 (284)
+...++.|+++|+.+-+.+...+.. .+ ..+-+.-+....++.+.++.-=......+|.+
T Consensus 23 qs~~i~~L~a~n~~q~~tI~qq~~~~~~L~~~~~~~r~~~~~~~~~~qq~r~~~e~~~e~ik~~ 86 (110)
T PF10828_consen 23 QSQRIDRLRAENKAQAQTIQQQEDANQELKAQLQQNRQAVEEQQKREQQLRQQSEERRESIKTA 86 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3347899999999888887765543 11 22222334444444555554433333444443
No 290
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=25.64 E-value=5e+02 Score=23.44 Aligned_cols=12 Identities=42% Similarity=0.418 Sum_probs=5.9
Q ss_pred hhhHHHHHHHhh
Q psy9275 242 KVLKPLLDLHLG 253 (284)
Q Consensus 242 ~~l~~~i~~wl~ 253 (284)
..+-.++..|+.
T Consensus 205 ahlv~lls~yL~ 216 (302)
T PF10186_consen 205 AHLVSLLSRYLG 216 (302)
T ss_pred HHHHHHHHHHhC
Confidence 344455555553
No 291
>KOG0249|consensus
Probab=25.52 E-value=2.7e+02 Score=30.66 Aligned_cols=29 Identities=17% Similarity=0.324 Sum_probs=17.8
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHhhhhhH
Q psy9275 132 ETVKQMA-GMQKLNSKIKSLELQGKRLREV 160 (284)
Q Consensus 132 ~a~~~~~-~le~Lk~ENe~L~~~l~~~e~~ 160 (284)
+...++. +++.+.+|..+++.+++-.++.
T Consensus 163 er~~kl~~~~qe~naeL~rarqreemneeh 192 (916)
T KOG0249|consen 163 ERTRKLEEQLEELNAELQRARQREKMNEEH 192 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4433443 6777777777777776665553
No 292
>CHL00132 psaF photosystem I subunit III; Validated
Probab=25.36 E-value=1.6e+02 Score=26.82 Aligned_cols=49 Identities=16% Similarity=0.171 Sum_probs=35.1
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHhHHHHHHHHHH
Q psy9275 128 DNNRETVKQMAGMQKLNSKIKSLELQGKRLREV-YKAAKLNNKIKSLELQGKRLRE 182 (284)
Q Consensus 128 r~NP~a~~~~~~le~Lk~ENe~L~~~l~~~e~~-~E~~~Lk~qi~~~eKr~~RLKE 182 (284)
++||.+.+|. +.+...|..++..-+.+ .....+++||++..+|.+|+-+
T Consensus 33 ses~aF~kR~------~~~~k~Le~rlk~Y~~~s~p~lal~~qi~~tk~RFe~Y~~ 82 (185)
T CHL00132 33 SESPAFQKRL------NNSVKKLENRLAKYEANSPPALALQQQIDKTKARFDKYGR 82 (185)
T ss_pred ccCHHHHHHH------HHHHHHHHhhhhccCCCCChHHHHHHHHHHHHHHHHHhcc
Confidence 6788776655 34455566666666654 3456899999999999998765
No 293
>KOG4001|consensus
Probab=25.30 E-value=5.5e+02 Score=24.13 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=17.1
Q ss_pred HHHH-HHHHHHHHHHHHHHHHhh
Q psy9275 135 KQMA-GMQKLNSKIKSLELQGKR 156 (284)
Q Consensus 135 ~~~~-~le~Lk~ENe~L~~~l~~ 156 (284)
++.. +++.|+.-|..|+++|..
T Consensus 231 kk~~eei~fLk~tN~qLKaQLeg 253 (259)
T KOG4001|consen 231 KKMKEEIEFLKETNRQLKAQLEG 253 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 3443 899999999999988764
No 294
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=25.24 E-value=1.4e+02 Score=25.92 Aligned_cols=45 Identities=18% Similarity=0.146 Sum_probs=24.3
Q ss_pred hHHHHHHHhhcccccccCCCCCc---chHHHHHHHHHHHHHHHHHHHH
Q psy9275 52 TYQMEWRALKGNATFSESAAPPG---SDRAKLEVLEKVIEGYRQRMEH 96 (284)
Q Consensus 52 ~~e~e~~~lk~~~~~~e~~~~~~---~l~~ki~eLE~~l~~~R~~~~~ 96 (284)
.+..|+..++.+.....+.++=+ .+++|+.+|+++++...+....
T Consensus 44 ~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~ 91 (161)
T PF04420_consen 44 QLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSS 91 (161)
T ss_dssp HHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555665544333323333 4677777777666666655544
No 295
>PF14335 DUF4391: Domain of unknown function (DUF4391)
Probab=24.90 E-value=1.9e+02 Score=26.15 Aligned_cols=42 Identities=21% Similarity=0.426 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHH
Q psy9275 134 VKQMAGMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLEL 175 (284)
Q Consensus 134 ~~~~~~le~Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi~~~eK 175 (284)
..+..+++.|.+|+++|+.++++-....+..++..++..+++
T Consensus 178 ~~~~~~i~~L~kei~~L~~~~~kEkq~nrkveln~elk~l~~ 219 (221)
T PF14335_consen 178 IERLEQIEKLEKEIAKLKKKIKKEKQFNRKVELNTELKKLKK 219 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHh
Confidence 345558888888888888887754433445555555555443
No 296
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=24.77 E-value=5.5e+02 Score=23.60 Aligned_cols=60 Identities=22% Similarity=0.201 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhH----------------HHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHHHHHHHHh
Q psy9275 139 GMQKLNSKIKSLELQGKRLREV----------------YKAAKLNNKIKSLELQGKRL---REVYKAASQEFRETVYLL 198 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~----------------~E~~~Lk~qi~~~eKr~~RL---KEVF~~Ks~EFReav~~L 198 (284)
....|+.||++|+...--+.++ +....+++++..-.+|+.-| .+---.-..+.++.|..|
T Consensus 63 ~NqkLqedNqELRdLCCFLDddRqKgrklarEWQrFGryta~vmr~eV~~Y~~KL~eLE~kq~~L~rEN~eLKElcl~L 141 (195)
T PF10226_consen 63 VNQKLQEDNQELRDLCCFLDDDRQKGRKLAREWQRFGRYTASVMRQEVAQYQQKLKELEDKQEELIRENLELKELCLYL 141 (195)
T ss_pred HHHHHHHHHHHHHHHHcccchhHHHhHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4555667777777554333332 22344455555555544444 122222356677777643
No 297
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=24.62 E-value=4.7e+02 Score=22.76 Aligned_cols=63 Identities=21% Similarity=0.271 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhH--HHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9275 136 QMAGMQKLNSKIKSLELQGKRLREV--YKAAKLNNKI-KSLELQGKRLREVYKAASQEFRETVYLL 198 (284)
Q Consensus 136 ~~~~le~Lk~ENe~L~~~l~~~e~~--~E~~~Lk~qi-~~~eKr~~RLKEVF~~Ks~EFReav~~L 198 (284)
+......|+.+++.|+..+..+... .++..++..+ -..+..-.|.++.++..-..+.+.=+.+
T Consensus 71 ~k~~~~~lr~~~e~L~~eie~l~~~L~~ei~~l~a~~klD~n~eK~~~r~e~~~~~~ki~e~~~ki 136 (177)
T PF07798_consen 71 RKSEFAELRSENEKLQREIEKLRQELREEINKLRAEVKLDLNLEKGRIREEQAKQELKIQELNNKI 136 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
No 298
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=24.52 E-value=5.1e+02 Score=26.85 Aligned_cols=15 Identities=13% Similarity=0.235 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHhh
Q psy9275 142 KLNSKIKSLELQGKR 156 (284)
Q Consensus 142 ~Lk~ENe~L~~~l~~ 156 (284)
.|++||++|+++-..
T Consensus 84 ~l~~eN~~L~~r~~~ 98 (472)
T TIGR03752 84 ALKAENERLQKREQS 98 (472)
T ss_pred HHHHHHHHHHHhhhh
Confidence 355555555554333
No 299
>KOG4643|consensus
Probab=24.48 E-value=1e+03 Score=27.47 Aligned_cols=18 Identities=17% Similarity=0.342 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHhh
Q psy9275 139 GMQKLNSKIKSLELQGKR 156 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~ 156 (284)
.++.|..||.-|..+-..
T Consensus 323 kteeL~eEnstLq~q~eq 340 (1195)
T KOG4643|consen 323 KTEELHEENSTLQVQKEQ 340 (1195)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566677777666544333
No 300
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.33 E-value=3.1e+02 Score=21.53 Aligned_cols=48 Identities=19% Similarity=0.302 Sum_probs=26.2
Q ss_pred HHhhhhhh-hHHHHHHHhhcccccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9275 44 LKEKVDHL-TYQMEWRALKGNATFSESAAPPGSDRAKLEVLEKVIEGYRQRMEHIEAD 100 (284)
Q Consensus 44 ~~~~~~~~-~~e~e~~~lk~~~~~~e~~~~~~~l~~ki~eLE~~l~~~R~~~~~~~~~ 100 (284)
.+.++|-- .|+||+..||..- +.+...++++....+.++.+++.+..+
T Consensus 13 iqqAvdTI~LLQmEieELKEkn---------n~l~~e~q~~q~~reaL~~eneqlk~e 61 (79)
T COG3074 13 VQQAIDTITLLQMEIEELKEKN---------NSLSQEVQNAQHQREALERENEQLKEE 61 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh---------hHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444 8899999998653 234444444444444444455444443
No 301
>PLN02939 transferase, transferring glycosyl groups
Probab=24.25 E-value=5.9e+02 Score=28.84 Aligned_cols=46 Identities=15% Similarity=0.192 Sum_probs=23.4
Q ss_pred hHHHHHHHhhcccccccCCCCCc-chHHHHHHHHHHHHHHHHHHHHH
Q psy9275 52 TYQMEWRALKGNATFSESAAPPG-SDRAKLEVLEKVIEGYRQRMEHI 97 (284)
Q Consensus 52 ~~e~e~~~lk~~~~~~e~~~~~~-~l~~ki~eLE~~l~~~R~~~~~~ 97 (284)
.|+.+++.|+-..+-++.---.+ .-...++=||+.+..+|+++...
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (977)
T PLN02939 167 ALQGKINILEMRLSETDARIKLAAQEKIHVEILEEQLEKLRNELLIR 213 (977)
T ss_pred HHHhhHHHHHHHhhhhhhhhhhhhhccccchhhHHHHHHHhhhhhcc
Confidence 47777777776654332110000 11223345666666777766653
No 302
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=24.22 E-value=8.2e+02 Score=25.38 Aligned_cols=23 Identities=22% Similarity=0.170 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q psy9275 177 GKRLREVYKAASQEFRETVYLLF 199 (284)
Q Consensus 177 ~~RLKEVF~~Ks~EFReav~~Ll 199 (284)
+.-|-.=|..++..|++-|..+.
T Consensus 138 l~~ll~Pl~e~l~~f~~~v~~~~ 160 (475)
T PRK10361 138 LNSLLSPLREQLDGFRRQVQDSF 160 (475)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHH
Confidence 34455667778888887776544
No 303
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=24.19 E-value=5.1e+02 Score=24.52 Aligned_cols=48 Identities=10% Similarity=0.055 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhH-----HHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy9275 139 GMQKLNSKIKSLELQGKRLREV-----YKAAKLNNKIKSLELQGKRLREVYKA 186 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~-----~E~~~Lk~qi~~~eKr~~RLKEVF~~ 186 (284)
.+...+++.+.+...+...... .++...+.++..+++..+|.+..|.+
T Consensus 94 ~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~a~~~l~~a~~~~~R~~~L~~~ 146 (346)
T PRK10476 94 DLALADAQIMTTQRSVDAERSNAASANEQVERARANAKLATRTLERLEPLLAK 146 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 5666665555544333221111 33445555666666667777666653
No 304
>PF10147 CR6_interact: Growth arrest and DNA-damage-inducible proteins-interacting protein 1; InterPro: IPR018472 Members of this family of proteins act as negative regulators of G1 to S cell cycle phase progression by inhibiting cyclin-dependent kinases. Inhibitory effects are additive with GADD45 proteins but occur also in the absence of GADD45 proteins. Furthermore, they act as a repressor of the orphan nuclear receptor NR4A1 by inhibiting AB domain-mediated transcriptional activity []. They may be involved in the hormone-mediated regulation of NR4A1 transcriptional activity.; GO: 0007049 cell cycle, 0005634 nucleus
Probab=24.15 E-value=2.8e+02 Score=25.76 Aligned_cols=16 Identities=44% Similarity=0.646 Sum_probs=11.8
Q ss_pred HHHhhceEEEeeCCee
Q psy9275 195 VYLLFGYKVDRTNCMY 210 (284)
Q Consensus 195 v~~LlGYkIdf~ng~~ 210 (284)
|...|||.||-.+.+|
T Consensus 165 vre~fGy~vDprdprF 180 (217)
T PF10147_consen 165 VREHFGYKVDPRDPRF 180 (217)
T ss_pred HHHHhCCcCCCCChHH
Confidence 6778999999654443
No 305
>TIGR03142 cytochro_ccmI cytochrome c-type biogenesis protein CcmI. This TPR repeat-containing protein is the CcmI protein (also called CycH) of c-type cytochrome biogenesis. CcmI is thought to act as an apo-cytochrome c chaperone. This model describes the N-terminal region of the protein, Members of this protein family
Probab=24.08 E-value=1.1e+02 Score=24.92 Aligned_cols=18 Identities=28% Similarity=0.481 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHhhcc
Q psy9275 85 KVIEGYRQRMEHIEADQG 102 (284)
Q Consensus 85 ~~l~~~R~~~~~~~~~l~ 102 (284)
.+++=||+++++++.|++
T Consensus 36 ~n~~iyr~qL~ELe~d~~ 53 (117)
T TIGR03142 36 LNLAVYRDRLAELERDLA 53 (117)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345567777777777775
No 306
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=24.06 E-value=96 Score=24.16 Aligned_cols=15 Identities=20% Similarity=0.572 Sum_probs=10.0
Q ss_pred chHHHHHHHHHHHHH
Q psy9275 75 SDRAKLEVLEKVIEG 89 (284)
Q Consensus 75 ~l~~ki~eLE~~l~~ 89 (284)
.++.||+.||+-||+
T Consensus 53 rm~eRI~tLE~ILda 67 (75)
T PF06667_consen 53 RMEERIETLERILDA 67 (75)
T ss_pred HHHHHHHHHHHHHcC
Confidence 566777777766553
No 307
>PF15058 Speriolin_N: Speriolin N terminus
Probab=23.81 E-value=1.2e+02 Score=27.95 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHH
Q psy9275 139 GMQKLNSKIKSLELQGKRLREVYK 162 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~~E 162 (284)
++++|-.||++|+.+++-+.+.++
T Consensus 13 qierLv~ENeeLKKlVrLirEN~e 36 (200)
T PF15058_consen 13 QIERLVRENEELKKLVRLIRENHE 36 (200)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHH
Confidence 678888899988888776554433
No 308
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=23.80 E-value=1e+03 Score=26.27 Aligned_cols=60 Identities=22% Similarity=0.265 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhH--------------HH---HHHH--HHHHHhHHHHHHHHHHHHHHH------HHHHHH
Q psy9275 139 GMQKLNSKIKSLELQGKRLREV--------------YK---AAKL--NNKIKSLELQGKRLREVYKAA------SQEFRE 193 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~--------------~E---~~~L--k~qi~~~eKr~~RLKEVF~~K------s~EFRe 193 (284)
.|+...+||..|+-.+..+... .| ...| -++|+.+|-..+||+-+..+| +...|.
T Consensus 142 ~l~~~eken~~Lkye~~~~~keleir~~E~~~~~~~ae~a~kqhle~vkkiakLEaEC~rLr~l~rk~lpgpaa~a~mk~ 221 (769)
T PF05911_consen 142 RLESTEKENSSLKYELHVLSKELEIRNEEREYSRRAAEAASKQHLESVKKIAKLEAECQRLRALVRKKLPGPAALAQMKN 221 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHhHH
Confidence 7888899999998777665543 11 1122 237999999999999999864 466676
Q ss_pred HHHHh
Q psy9275 194 TVYLL 198 (284)
Q Consensus 194 av~~L 198 (284)
-|-.+
T Consensus 222 ev~~~ 226 (769)
T PF05911_consen 222 EVESL 226 (769)
T ss_pred HHHHh
Confidence 67665
No 309
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=23.59 E-value=2.8e+02 Score=27.09 Aligned_cols=115 Identities=17% Similarity=0.146 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhhhhHHHHHHHhhcccccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccc
Q psy9275 39 LREKELKEKVDHLTYQMEWRALKGNATFSESAAPPGSDRAKLEVLEKVIEGYRQRMEHIEADQGLVCVIPGQNSEKVAQQ 118 (284)
Q Consensus 39 ~~~~~~~~~~~~~~~e~e~~~lk~~~~~~e~~~~~~~l~~ki~eLE~~l~~~R~~~~~~~~~l~~~~lE~~~~~g~~~~~ 118 (284)
+-+..|+..|. ||--+|.-.|-.- +.||..+..||.+++..-.|.+..+....-+.-.|-..
T Consensus 63 ~QLn~L~aENt--~L~SkLe~EKq~k----------------erLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~ 124 (305)
T PF14915_consen 63 GQLNVLKAENT--MLNSKLEKEKQNK----------------ERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRA 124 (305)
T ss_pred hhHHHHHHHHH--HHhHHHHHhHHHH----------------HHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHH
Q ss_pred cceeeeeecccCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH--------------------------HHHHHHHHHHHh
Q psy9275 119 KVQELQMEADNNRETVKQMAGMQKLNSKIKSLELQGKRLREV--------------------------YKAAKLNNKIKS 172 (284)
Q Consensus 119 ~tkvlIL~lr~NP~a~~~~~~le~Lk~ENe~L~~~l~~~e~~--------------------------~E~~~Lk~qi~~ 172 (284)
+..-.-|+=++|-+ +..|+..|+-|-++|...+.. .++.+-+-++..
T Consensus 125 rdEw~~lqdkmn~d-------~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE 197 (305)
T PF14915_consen 125 RDEWVRLQDKMNSD-------VSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKE 197 (305)
T ss_pred hhHHHHHHHHhcch-------HHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH
Q psy9275 173 LELQGK 178 (284)
Q Consensus 173 ~eKr~~ 178 (284)
.+...+
T Consensus 198 ~e~m~q 203 (305)
T PF14915_consen 198 IEHMYQ 203 (305)
T ss_pred HHHHHH
No 310
>KOG0964|consensus
Probab=23.41 E-value=4.2e+02 Score=30.19 Aligned_cols=17 Identities=18% Similarity=0.270 Sum_probs=11.7
Q ss_pred hHHHHHHHhhccccccc
Q psy9275 52 TYQMEWRALKGNATFSE 68 (284)
Q Consensus 52 ~~e~e~~~lk~~~~~~e 68 (284)
.|+.+++.|.-+.+..+
T Consensus 304 ~lel~~kdlq~~i~~n~ 320 (1200)
T KOG0964|consen 304 KLELKIKDLQDQITGNE 320 (1200)
T ss_pred hhhhhhHHHHHHhhhhh
Confidence 57777777777765544
No 311
>TIGR00020 prfB peptide chain release factor 2. In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc.
Probab=23.26 E-value=7.5e+02 Score=24.64 Aligned_cols=11 Identities=27% Similarity=0.232 Sum_probs=8.2
Q ss_pred HHhhceEEEee
Q psy9275 196 YLLFGYKVDRT 206 (284)
Q Consensus 196 ~~LlGYkIdf~ 206 (284)
..--||++++.
T Consensus 154 a~~~g~~~evi 164 (364)
T TIGR00020 154 AERRGFKVEII 164 (364)
T ss_pred HHHcCCEEEEE
Confidence 34469999887
No 312
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=23.09 E-value=4.9e+02 Score=22.39 Aligned_cols=29 Identities=14% Similarity=0.368 Sum_probs=18.0
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy9275 73 PGSDRAKLEVLEKVIEGYRQRMEHIEADQ 101 (284)
Q Consensus 73 ~~~l~~ki~eLE~~l~~~R~~~~~~~~~l 101 (284)
......++.+|++.++++++.+..+..++
T Consensus 83 ~~~~~~~l~~l~~el~~l~~~~~~~~~~l 111 (191)
T PF04156_consen 83 LSELQQQLQQLQEELDQLQERIQELESEL 111 (191)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666666666655
No 313
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=23.07 E-value=3.3e+02 Score=20.39 Aligned_cols=40 Identities=18% Similarity=0.228 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHH
Q psy9275 139 GMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRL 180 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi~~~eKr~~RL 180 (284)
+|...+..|-.+..+|...+ ....+|..+|..+++.+.-+
T Consensus 19 EL~kvk~~n~~~e~kLqeaE--~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 19 ELTKVKSANLAFESKLQEAE--KRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHh
Confidence 77777777777777777655 44556666666666665543
No 314
>PF05494 Tol_Tol_Ttg2: Toluene tolerance, Ttg2 ; InterPro: IPR008869 Toluene tolerance is mediated by increased cell membrane rigidity resulting from changes in fatty acid and phospholipid compositions, exclusion of toluene from the cell membrane, and removal of intracellular toluene by degradation []. Many proteins are involved in these processes. This family is a transporter which shows similarity to ABC transporters [].; PDB: 2QGU_A.
Probab=23.01 E-value=4.7e+02 Score=22.19 Aligned_cols=88 Identities=11% Similarity=0.188 Sum_probs=55.2
Q ss_pred HHHHHHHHH-HHHHHHHHHHHhhceEEEee------C---CeeEEEeeccCCCCCce--EEEec--CCeeeeeC-----C
Q psy9275 178 KRLREVYKA-ASQEFRETVYLLFGYKVDRT------N---CMYKLASMYADGPDENL--LFQST--EGQLNLIE-----T 238 (284)
Q Consensus 178 ~RLKEVF~~-Ks~EFReav~~LlGYkIdf~------n---g~~rL~S~Ya~s~ed~L--vF~~~--~G~mkll~-----s 238 (284)
++.-+.|.. -+..+-......-|++|++. . +.+.|.+......++.+ .|... +|.-++.+ -
T Consensus 61 ~~F~~~f~~~l~~~Y~~~l~~y~~~~v~~~~~~~~~~~~~~~~~V~t~i~~~~g~~i~v~y~l~~~~g~Wki~Dv~ieGv 140 (170)
T PF05494_consen 61 QRFVEAFKQLLVRTYAKRLDEYSGQSVEVLSEPPNGRKGGNRAIVRTEIISKDGQPIPVDYRLRKKDGKWKIYDVIIEGV 140 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-SS-EEEE------S-TT-SEEEEEEEEEET-TEEEEEEEEEEEETTEEEEEEEEETTE
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeccCCCCCCCCEEEEEEEEEcCCCCcEEEEEEEEEcCCCeEEEEEEEcce
Confidence 566666666 34556666777789888888 2 58888888776554433 33332 56544433 3
Q ss_pred cchhhhHHHHHHHhhhCCCchhhhHHhc
Q psy9275 239 DYSKVLKPLLDLHLGRHHSIPMLLSALT 266 (284)
Q Consensus 239 ~f~~~l~~~i~~wl~~~~SIPaFLAALT 266 (284)
.+....+......+.+.+ |++.++.|.
T Consensus 141 Sl~~~~R~qF~~~l~~~G-id~li~~l~ 167 (170)
T PF05494_consen 141 SLVATYRSQFQSILRKNG-IDGLIEKLK 167 (170)
T ss_dssp EHHHHHHHHHHHHHHHHT-HHHHHHHHH
T ss_pred eHHHHHHHHHHHHHHhCC-HHHHHHHHH
Confidence 345677888899998886 999988763
No 315
>smart00338 BRLZ basic region leucin zipper.
Probab=22.97 E-value=3e+02 Score=19.87 Aligned_cols=32 Identities=22% Similarity=0.385 Sum_probs=20.8
Q ss_pred HHH-HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q psy9275 136 QMA-GMQKLNSKIKSLELQGKRLREVYKAAKLNNK 169 (284)
Q Consensus 136 ~~~-~le~Lk~ENe~L~~~l~~~e~~~E~~~Lk~q 169 (284)
.++ .+..|..+|..|..++..+. .++..|+.+
T Consensus 30 ~Le~~~~~L~~en~~L~~~~~~l~--~e~~~lk~~ 62 (65)
T smart00338 30 ELERKVEQLEAENERLKKEIERLR--RELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 444 78888888888887776655 444444443
No 316
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=22.96 E-value=6.4e+02 Score=23.71 Aligned_cols=59 Identities=10% Similarity=0.129 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHhh
Q psy9275 139 GMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRLREVYKA-ASQEFRETVYLLF 199 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi~~~eKr~~RLKEVF~~-Ks~EFReav~~Ll 199 (284)
+.+.|-+....-++++++++ .++.+++..++..+....+=-+-|.. |..||+++...+-
T Consensus 161 d~E~l~E~l~~rre~~~kLe--~~ie~~~~~ve~f~~~~~~E~~~Fe~~K~~e~k~~l~~~A 220 (240)
T cd07667 161 EYEAKLEAVALRKEERPKVP--TDVEKCQDRVECFNADLKADMERWQNNKRQDFRQLLMGMA 220 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555554433334444444 55666677776666666666667766 8889999887654
No 317
>PRK14127 cell division protein GpsB; Provisional
Probab=22.93 E-value=1.9e+02 Score=24.10 Aligned_cols=44 Identities=20% Similarity=0.308 Sum_probs=26.7
Q ss_pred HHHHhhhhhhhHHHHHHHhhcccccccCCC------CC-c-c---hHHHHHHHHHHH
Q psy9275 42 KELKEKVDHLTYQMEWRALKGNATFSESAA------PP-G-S---DRAKLEVLEKVI 87 (284)
Q Consensus 42 ~~~~~~~~~~~~e~e~~~lk~~~~~~e~~~------~~-~-~---l~~ki~eLE~~l 87 (284)
.+|++.+. .++.++..++++.+.++++. +. + + +.+||..||+..
T Consensus 47 ~~Lk~e~~--~l~~~l~e~~~~~~~~~~~~~~~~~~~~~~~tn~DiLKRls~LEk~V 101 (109)
T PRK14127 47 EELQQENA--RLKAQVDELTKQVSVGASSSSVATTQPSSSATNYDILKRLSNLEKHV 101 (109)
T ss_pred HHHHHHHH--HHHHHHHHHHHhhccccccccccccCCCCCcchHHHHHHHHHHHHHH
Confidence 35555555 66777777777766544321 11 1 1 778999999654
No 318
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=22.88 E-value=4.1e+02 Score=26.56 Aligned_cols=73 Identities=21% Similarity=0.316 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccceeeeeeccc----CHHHHHHHHHHHHHHHHHHHHH
Q psy9275 76 DRAKLEVLEKVIEGYRQRMEHIEADQGLVCVIPGQNSEKVAQQKVQELQMEADN----NRETVKQMAGMQKLNSKIKSLE 151 (284)
Q Consensus 76 l~~ki~eLE~~l~~~R~~~~~~~~~l~~~~lE~~~~~g~~~~~~tkvlIL~lr~----NP~a~~~~~~le~Lk~ENe~L~ 151 (284)
+.++++.|++.+...+.+++.+++.+. .+.. ++...++.+.+..++.....|.
T Consensus 332 l~~~~~~l~~~~~~~~~~l~~l~~~l~-----------------------~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 388 (451)
T PF03961_consen 332 LKEKLEELEEELEELKEELEKLKKNLK-----------------------KLKKLKKQGKLPPEKKEQLKKLKEKKKELK 388 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------hhhhhcccccCCHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhhhHHHHHHHHHHHHhH
Q psy9275 152 LQGKRLREVYKAAKLNNKIKSL 173 (284)
Q Consensus 152 ~~l~~~e~~~E~~~Lk~qi~~~ 173 (284)
+++..+. .++.+|+.++...
T Consensus 389 ~~~~~l~--~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 389 EELKELK--EELKELKEELERS 408 (451)
T ss_pred HHHHHHH--HHHHHHHHHHHhh
No 319
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=22.82 E-value=4e+02 Score=21.32 Aligned_cols=45 Identities=18% Similarity=0.189 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy9275 139 GMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRLREVYKA 186 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi~~~eKr~~RLKEVF~~ 186 (284)
+..+|++|++-|+.++.... ++...-.+-.++...+.||+..+..
T Consensus 25 e~~~L~eEI~~Lr~qve~nP---evtr~A~EN~rL~ee~rrl~~f~~~ 69 (86)
T PF12711_consen 25 ENEALKEEIQLLREQVEHNP---EVTRFAMENIRLREELRRLQSFYVE 69 (86)
T ss_pred HHHHHHHHHHHHHHHHHhCH---HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34678888888888877654 4444444555555556666665543
No 320
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=22.66 E-value=9.1e+02 Score=28.07 Aligned_cols=27 Identities=4% Similarity=0.169 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy9275 76 DRAKLEVLEKVIEGYRQRMEHIEADQG 102 (284)
Q Consensus 76 l~~ki~eLE~~l~~~R~~~~~~~~~l~ 102 (284)
-.++|.+|++.|+..+.++..++..+.
T Consensus 740 R~~ri~el~~~IaeL~~~i~~l~~~l~ 766 (1353)
T TIGR02680 740 RLRRIAELDARLAAVDDELAELARELR 766 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999998888888777663
No 321
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=22.63 E-value=3.6e+02 Score=25.29 Aligned_cols=71 Identities=7% Similarity=-0.035 Sum_probs=30.8
Q ss_pred ccccccccceeeeeecccCHHH---HHHH-HHHHHHHHHHHHHHHHHhhhhhH---HHHHHHHHHHHhHHHHHHHHHHHH
Q psy9275 112 SEKVAQQKVQELQMEADNNRET---VKQM-AGMQKLNSKIKSLELQGKRLREV---YKAAKLNNKIKSLELQGKRLREVY 184 (284)
Q Consensus 112 ~g~~~~~~tkvlIL~lr~NP~a---~~~~-~~le~Lk~ENe~L~~~l~~~e~~---~E~~~Lk~qi~~~eKr~~RLKEVF 184 (284)
.|++.....-+ +.| ++|.. ..+. +.++.++++.+.+....+..+-. .++...+.++..+++...|.+..|
T Consensus 61 ~Gd~V~kG~~L--~~l-d~~~~~~~l~~~~a~l~~~~~~l~~~~~~~~~~~i~~~~~~l~~ak~~l~~a~~~~~r~~~L~ 137 (331)
T PRK03598 61 EGDAVKAGQVL--GEL-DAAPYENALMQAKANVSVAQAQLDLMLAGYRDEEIAQARAAVKQAQAAYDYAQNFYNRQQGLW 137 (331)
T ss_pred CCCEEcCCCEE--EEE-ChHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46665555533 455 44422 1222 25555555554443222110000 233444445555555555555444
Q ss_pred H
Q psy9275 185 K 185 (284)
Q Consensus 185 ~ 185 (284)
.
T Consensus 138 ~ 138 (331)
T PRK03598 138 K 138 (331)
T ss_pred H
Confidence 4
No 322
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=22.57 E-value=4.6e+02 Score=22.71 Aligned_cols=52 Identities=23% Similarity=0.372 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy9275 140 MQKLNSKIKSLELQGKRLREV-YKAAKLNNKIKSLELQGKRLREVYKAASQEF 191 (284)
Q Consensus 140 le~Lk~ENe~L~~~l~~~e~~-~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EF 191 (284)
++.|+.+....-.+|..+... ....+|+++|+.++..+.-.++-|..++...
T Consensus 29 ~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~ 81 (155)
T PF06810_consen 29 RDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQM 81 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444433333333333321 3566788888888888887777777766554
No 323
>KOG4673|consensus
Probab=22.56 E-value=6.9e+02 Score=27.63 Aligned_cols=28 Identities=14% Similarity=0.265 Sum_probs=17.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy9275 74 GSDRAKLEVLEKVIEGYRQRMEHIEADQ 101 (284)
Q Consensus 74 ~~l~~ki~eLE~~l~~~R~~~~~~~~~l 101 (284)
+++.+|+..+=++-|.+|-++..+..+|
T Consensus 412 a~lEkKvqa~~kERDalr~e~kslk~el 439 (961)
T KOG4673|consen 412 ATLEKKVQALTKERDALRREQKSLKKEL 439 (961)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3455555555566667777777666666
No 324
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=22.49 E-value=9.4e+02 Score=25.49 Aligned_cols=19 Identities=11% Similarity=0.146 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy9275 78 AKLEVLEKVIEGYRQRMEH 96 (284)
Q Consensus 78 ~ki~eLE~~l~~~R~~~~~ 96 (284)
..|.+|...+...+.++..
T Consensus 288 ~~i~~L~~~l~~l~~~~~~ 306 (754)
T TIGR01005 288 DLIQRLRERQAELRATIAD 306 (754)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444443333
No 325
>TIGR01255 pyr_form_ly_1 formate acetyltransferase 1. This model describes formate acetyltransferase 1. More distantly related putative formate acetyltransferases have also been identified, including formate acetyltransferase 2 from E. coli, which is excluded from this model.
Probab=22.45 E-value=1.8e+02 Score=31.77 Aligned_cols=67 Identities=12% Similarity=0.092 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHH-------HHHHHHHHHHHHh-hceEEEee
Q psy9275 139 GMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRLREVYK-------AASQEFRETVYLL-FGYKVDRT 206 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi~~~eKr~~RLKEVF~-------~Ks~EFReav~~L-lGYkIdf~ 206 (284)
-++.|.+|.++-++.+. ........+|.+++++.+++..-|+++=. .-...|+|||..+ |+|-+-..
T Consensus 178 G~~~li~e~~~~~~~l~-~~~~~~~a~laeelAeq~~r~~EL~~iA~~c~~vp~~PA~tf~EAvQ~~wf~~l~~~~ 252 (744)
T TIGR01255 178 GIDYLMKEKAKEWDALT-EDNEEEQIRLREEINEQYRALQEVKNMAALYGLDISRPAMNAKEAIQWVYFGYLAVVK 252 (744)
T ss_pred HHHHHHHHHHHHHHhcC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcCCCCCCHHHHHHHHHHHHHHhee
Confidence 66778888877777765 22224578888888887887777777732 2367899999998 88865555
No 326
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=21.88 E-value=5.2e+02 Score=22.27 Aligned_cols=14 Identities=14% Similarity=0.131 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHH
Q psy9275 141 QKLNSKIKSLELQG 154 (284)
Q Consensus 141 e~Lk~ENe~L~~~l 154 (284)
+.|+.||..|..++
T Consensus 45 eqLkien~~l~~kI 58 (177)
T PF13870_consen 45 EQLKIENQQLNEKI 58 (177)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444444
No 327
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=21.86 E-value=4.2e+02 Score=22.29 Aligned_cols=44 Identities=20% Similarity=0.317 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhH---------HHHHHHHHHHHhHHHHHHHHHH
Q psy9275 139 GMQKLNSKIKSLELQGKRLREV---------YKAAKLNNKIKSLELQGKRLRE 182 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~---------~E~~~Lk~qi~~~eKr~~RLKE 182 (284)
++..|.+|.++|+.-++..|+- ..+.+|.+.+..+|-...-+|+
T Consensus 9 q~~~l~~~v~~lRed~r~SEdrsa~SRa~mhrRlDElV~Rv~~lEs~~~~lk~ 61 (112)
T PF07439_consen 9 QLGTLNAEVKELREDIRRSEDRSAASRASMHRRLDELVERVTTLESSVSTLKA 61 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence 6888999999999999988864 4466777777766655544443
No 328
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=21.75 E-value=7.1e+02 Score=23.81 Aligned_cols=53 Identities=17% Similarity=0.281 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9275 139 GMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRLREVYKAASQEFRETVY 196 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFReav~ 196 (284)
.++.-+.|.++...+|..+.... =+=.+.-|+-...|++.|..-+..||...|
T Consensus 198 KIekkk~ELER~qKRL~sLq~vR-----PAfmdEyEklE~EL~~lY~~Y~~kfRNl~y 250 (267)
T PF10234_consen 198 KIEKKKQELERNQKRLQSLQSVR-----PAFMDEYEKLEEELQKLYEIYVEKFRNLDY 250 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC-----hHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 57777777788777777666430 001233334444566677777778887766
No 329
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=21.73 E-value=4e+02 Score=20.87 Aligned_cols=53 Identities=19% Similarity=0.211 Sum_probs=42.1
Q ss_pred HHHHHhhhhhhhHHHHHHHhhcccccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy9275 41 EKELKEKVDHLTYQMEWRALKGNATFSESAAPPGSDRAKLEVLEKVIEGYRQRMEHIEADQ 101 (284)
Q Consensus 41 ~~~~~~~~~~~~~e~e~~~lk~~~~~~e~~~~~~~l~~ki~eLE~~l~~~R~~~~~~~~~l 101 (284)
++++-.|++ .++-.+..++++. ..+..+..|+..+...++...+.+......|
T Consensus 13 Ik~vd~KVd--aLq~~V~~l~~~~------~~v~~l~~klDa~~~~l~~l~~~V~~I~~iL 65 (75)
T PF05531_consen 13 IKAVDDKVD--ALQTQVDDLESNL------PDVTELNKKLDAQSAQLTTLNTKVNEIQDIL 65 (75)
T ss_pred HHHHHHHHH--HHHHHHHHHHhcC------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566666777 7788888888877 4566789999999988888888888887777
No 330
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=21.60 E-value=4.8e+02 Score=21.80 Aligned_cols=40 Identities=13% Similarity=0.244 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHH
Q psy9275 139 GMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRLREV 183 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi~~~eKr~~RLKEV 183 (284)
.+..++.|..++...+... ..+...++...+..+.+||+-
T Consensus 109 ~~k~~kee~~klk~~~~~~-----~tq~~~e~rkke~E~~kLk~r 148 (151)
T PF11559_consen 109 KLKQEKEELQKLKNQLQQR-----KTQYEHELRKKEREIEKLKER 148 (151)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555554443322 233444555566666666653
No 331
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=21.53 E-value=2.4e+02 Score=29.15 Aligned_cols=48 Identities=15% Similarity=0.234 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhH----------------------------HHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy9275 139 GMQKLNSKIKSLELQGKRLREV----------------------------YKAAKLNNKIKSLELQGKRLREVYKA 186 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~----------------------------~E~~~Lk~qi~~~eKr~~RLKEVF~~ 186 (284)
+|.+||.+..+|+.+|...... .++.+++.||+....|..-|++.+..
T Consensus 33 ql~aLq~~v~eL~~~laa~~~aa~~gA~~~~~~~a~~~aP~~~a~~~~T~d~~~~~~qqiAn~~lKv~~l~da~~t 108 (514)
T PF11336_consen 33 QLQALQDQVNELRAKLAAKPAAAPGGAAIGPAATAAAAAPSSDAQAGLTNDDATEMRQQIANAQLKVESLEDAAET 108 (514)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCccccccccccccccCCCcccccccChHHHHHHHHHHHhhhhhHHHHhhHHhc
Confidence 6677777777777776654332 46888899999999999888887654
No 332
>KOG4001|consensus
Probab=21.39 E-value=4.4e+02 Score=24.77 Aligned_cols=53 Identities=21% Similarity=0.229 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHH--HHHhhhhhH-----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy9275 139 GMQKLNSKIKSLE--LQGKRLREV-----YKAAKLNNKIKSLELQGKRLREVYKAASQEF 191 (284)
Q Consensus 139 ~le~Lk~ENe~L~--~~l~~~e~~-----~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EF 191 (284)
.-.+|++||+.-+ .++..++.. ..+++++++.+..++++.-..++--+|-.+-
T Consensus 177 mRKALqae~ek~~~~~~~k~le~~k~~Le~~ia~~k~K~e~~e~r~~E~r~ieEkk~~ee 236 (259)
T KOG4001|consen 177 MRKALQAENEKTRATTEWKVLEDKKKELELKIAQLKKKLETDEIRSEEEREIEEKKMKEE 236 (259)
T ss_pred HHHHHHHhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 5678888887654 455555544 3478888999999999988888877776653
No 333
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=21.38 E-value=1.2e+02 Score=25.73 Aligned_cols=21 Identities=24% Similarity=0.215 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhh
Q psy9275 139 GMQKLNSKIKSLELQGKRLRE 159 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~ 159 (284)
+|..|+-||..|+.++.....
T Consensus 11 eL~kLqmENk~LKkkl~~~~~ 31 (118)
T PF05812_consen 11 ELQKLQMENKALKKKLRQSVG 31 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHHccCC
Confidence 899999999999999998874
No 334
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=21.26 E-value=1.7e+02 Score=21.39 Aligned_cols=19 Identities=26% Similarity=0.350 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q psy9275 139 GMQKLNSKIKSLELQGKRL 157 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~ 157 (284)
.|..|..||..|+++|...
T Consensus 30 rl~~l~~EN~~Lr~eL~~~ 48 (52)
T PF12808_consen 30 RLSKLEGENRLLRAELERL 48 (52)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4778999999999887643
No 335
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=21.04 E-value=4e+02 Score=23.95 Aligned_cols=46 Identities=37% Similarity=0.476 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHhHHHHHHHHHHHH
Q psy9275 139 GMQKLNSKIKSLELQGKRLREV-YKAAKLNNKIKSLELQGKRLREVY 184 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~-~E~~~Lk~qi~~~eKr~~RLKEVF 184 (284)
....|+.|+++|..++..++.. .....|+.+...++....+..+-|
T Consensus 121 ~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~F~~~y 167 (171)
T PF04799_consen 121 TKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELERFQEQY 167 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555555555543 334455555555666655555554
No 336
>PF14182 YgaB: YgaB-like protein
Probab=21.03 E-value=4.3e+02 Score=20.98 Aligned_cols=55 Identities=16% Similarity=0.266 Sum_probs=41.0
Q ss_pred HHHHHHHHHHH---HHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy9275 140 MQKLNSKIKSL---ELQGKRLREVYKAAKLNNKIKSLELQGKRLREVYKAASQEFRET 194 (284)
Q Consensus 140 le~Lk~ENe~L---~~~l~~~e~~~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFRea 194 (284)
+=-|++|.++= -..+..++...++..++.+|...++...-+..+|.+...+-+..
T Consensus 16 LL~LQsElERCqeIE~eL~~l~~ea~l~~i~~EI~~mkk~Lk~Iq~~Fe~QTeeVI~s 73 (79)
T PF14182_consen 16 LLFLQSELERCQEIEKELKELEREAELHSIQEEISQMKKELKEIQRVFEKQTEEVIRS 73 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456665554 34555555557788899999999999999999999988876544
No 337
>KOG2264|consensus
Probab=21.02 E-value=55 Score=34.88 Aligned_cols=28 Identities=14% Similarity=0.257 Sum_probs=13.9
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9275 73 PGSDRAKLEVLEKVIEGYRQRMEHIEAD 100 (284)
Q Consensus 73 ~~~l~~ki~eLE~~l~~~R~~~~~~~~~ 100 (284)
.+.+..||++|.+.|...+.+++.++-.
T Consensus 109 I~~~n~kiEelk~~i~~~q~eL~~Lk~~ 136 (907)
T KOG2264|consen 109 IEEINTKIEELKRLIPQKQLELSALKGE 136 (907)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhH
Confidence 3345555555555555555555444433
No 338
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=20.93 E-value=3.6e+02 Score=20.03 Aligned_cols=40 Identities=10% Similarity=0.130 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhH-----HHHHHHHHHHHhHHHHHH
Q psy9275 139 GMQKLNSKIKSLELQGKRLREV-----YKAAKLNNKIKSLELQGK 178 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~-----~E~~~Lk~qi~~~eKr~~ 178 (284)
.++.|-.+...|-.++..+..+ .++...+.+.+.++.|+.
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlD 48 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLD 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666555533 344455555555555544
No 339
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=20.92 E-value=6e+02 Score=23.63 Aligned_cols=9 Identities=33% Similarity=0.361 Sum_probs=5.0
Q ss_pred HHHHHhhhh
Q psy9275 41 EKELKEKVD 49 (284)
Q Consensus 41 ~~~~~~~~~ 49 (284)
+++++.+..
T Consensus 3 i~~ir~K~~ 11 (230)
T PF10146_consen 3 IKEIRNKTL 11 (230)
T ss_pred HHHHHHHHH
Confidence 455665555
No 340
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=20.85 E-value=2.2e+02 Score=29.48 Aligned_cols=63 Identities=11% Similarity=0.215 Sum_probs=40.4
Q ss_pred hhhHHHHHHHHhhhhhhhHHHHHHHhhcccccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy9275 35 RDELLREKELKEKVDHLTYQMEWRALKGNATFSESAAPPGSDRAKLEVLEKVIEGYRQRMEHIEADQ 101 (284)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~e~e~~~lk~~~~~~e~~~~~~~l~~ki~eLE~~l~~~R~~~~~~~~~l 101 (284)
..+.-.+++-..+.+ .||.+|..|+..... .+...+.+.+||++||.+++.++++++.+...+
T Consensus 65 kVnqSALteqQ~kas--ELEKqLaaLrqElq~--~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~~~ 127 (475)
T PRK13729 65 KVRQHATTEMQVTAA--QMQKQYEEIRRELDV--LNKQRGDDQRRIEKLGQDNAALAEQVKALGANP 127 (475)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH--HhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 345555666666666 777777777644310 012234678999999999999998886544443
No 341
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=20.84 E-value=5.8e+02 Score=25.56 Aligned_cols=60 Identities=17% Similarity=0.193 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9275 139 GMQKLNSKIKSLELQGKRLREV-YKAAKLNNKIKSLELQGKRLREVYKAASQEFRETVYLL 198 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~-~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFReav~~L 198 (284)
+++.|++|-..+-..+...... .+..++.+++..+.+++..|.+-...--.++.+.+..|
T Consensus 43 ~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i 103 (425)
T PRK05431 43 ELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEELLLRI 103 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 7788888777777776652222 23445666666666666666666666666666655554
No 342
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=20.55 E-value=5.7e+02 Score=22.26 Aligned_cols=36 Identities=17% Similarity=0.243 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHH
Q psy9275 139 GMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQ 176 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi~~~eKr 176 (284)
+.+.+.+|.+.|...+.+.+ .++..|++|.+.+++.
T Consensus 155 ~~~~~~~ei~~lk~el~~~~--~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 155 ENKKLSEEIEKLKKELEKKE--KEIEALKKQSEGLQKE 190 (192)
T ss_pred hhhhhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhh
Confidence 44556666666666666544 5677788887777654
No 343
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=20.43 E-value=4e+02 Score=20.37 Aligned_cols=24 Identities=38% Similarity=0.555 Sum_probs=11.3
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHh
Q psy9275 132 ETVKQMA-GMQKLNSKIKSLELQGK 155 (284)
Q Consensus 132 ~a~~~~~-~le~Lk~ENe~L~~~l~ 155 (284)
.+...+. .++.+..+.+.|...+.
T Consensus 62 ~~~~~L~~~~~~~~~~i~~l~~~~~ 86 (106)
T PF01920_consen 62 EAIEELEERIEKLEKEIKKLEKQLK 86 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444333 45555555555544433
No 344
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=20.27 E-value=1.1e+03 Score=25.26 Aligned_cols=23 Identities=13% Similarity=0.060 Sum_probs=15.6
Q ss_pred eeeccccccchhhhhhhHHHHHH
Q psy9275 21 LVELGYLSSNRERERDELLREKE 43 (284)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~ 43 (284)
+++++|.+++...-.+=+-.+.+
T Consensus 229 ii~Is~~~~dP~~Aa~ilN~la~ 251 (726)
T PRK09841 229 MLELTMTGDDPQLITRILNSIAN 251 (726)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHH
Confidence 67888888888777654444333
No 345
>PRK09458 pspB phage shock protein B; Provisional
Probab=20.25 E-value=38 Score=26.53 Aligned_cols=15 Identities=20% Similarity=0.558 Sum_probs=10.3
Q ss_pred chHHHHHHHHHHHHH
Q psy9275 75 SDRAKLEVLEKVIEG 89 (284)
Q Consensus 75 ~l~~ki~eLE~~l~~ 89 (284)
.++.||+.||+-||.
T Consensus 53 rm~~RI~tLE~ILDa 67 (75)
T PRK09458 53 RMRERIQALEAILDA 67 (75)
T ss_pred HHHHHHHHHHHHHcc
Confidence 567777777766654
No 346
>cd07590 BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 3 (Bin3) is widely expressed in many tissues except in the brain. It plays roles in regulating filamentous actin localization and in cell division. In humans, the Bin3 gene is located in chromosome 8p21.3, a region that is implicated in cancer suppression. Homozygous inactivation of the Bin3 gene in mice led to the development of cataracts and an increased likelihood of lymphomas during aging, suggesting a role for Bin3 in lens development and cancer suppression. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=20.14 E-value=5.9e+02 Score=23.52 Aligned_cols=68 Identities=13% Similarity=0.096 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhceEEEee
Q psy9275 139 GMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRLREVYKAASQEFRETVYLLFGYKVDRT 206 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFReav~~LlGYkIdf~ 206 (284)
.-+...-..++.+.++.++.+-.....-..++..++.....-+++|..-...-.+-.=.|+.-+|.|.
T Consensus 116 KR~~Kl~DYD~~r~~~~kl~~K~~k~~~~~KL~kae~el~~Ak~~ye~~N~~L~~ELP~l~~~r~~f~ 183 (225)
T cd07590 116 RREQSLQEYERLQAKVEKLAEKEKTGPNLAKLEQAEKALAAARADFEKQNIKLLEELPKFYNGRTDYF 183 (225)
T ss_pred HHHhHHHHHHHHHHHHHHHHhCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHHH
Confidence 34444455555555555554322221115778889999999999999988888888888888888776
No 347
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=20.07 E-value=3.2e+02 Score=25.51 Aligned_cols=28 Identities=21% Similarity=0.216 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q psy9275 139 GMQKLNSKIKSLELQGKRLREVYKAAKLNN 168 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~~E~~~Lk~ 168 (284)
+|+.|+.|+.+|+.++..+. +++.++++
T Consensus 62 ql~~lq~ev~~LrG~~E~~~--~~l~~~~~ 89 (263)
T PRK10803 62 QLSDNQSDIDSLRGQIQENQ--YQLNQVVE 89 (263)
T ss_pred HHHHHHHHHHHHhhHHHHHH--HHHHHHHH
Confidence 68889999999998877655 44444443
Done!