Query psy9275
Match_columns 284
No_of_seqs 146 out of 187
Neff 4.8
Searched_HMMs 29240
Date Fri Aug 16 23:18:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9275.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9275hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dzo_A Mitotic spindle assembl 100.0 1.1E-44 3.6E-49 300.8 15.0 116 161-276 4-123 (123)
2 1go4_E MAD1 (mitotic arrest de 99.5 2.1E-14 7E-19 115.2 7.1 83 71-160 12-97 (100)
3 3i00_A HIP-I, huntingtin-inter 91.7 0.75 2.6E-05 37.5 8.2 49 139-187 69-118 (120)
4 3na7_A HP0958; flagellar bioge 91.3 3.6 0.00012 36.6 13.0 20 221-240 219-238 (256)
5 2ve7_A Kinetochore protein HEC 88.9 0.36 1.2E-05 44.9 4.5 112 139-265 186-305 (315)
6 3vkg_A Dynein heavy chain, cyt 87.3 5.4 0.00018 47.7 13.7 62 139-200 2029-2105(3245)
7 4emc_A Monopolin complex subun 87.0 3.7 0.00013 36.0 9.4 63 139-204 21-87 (190)
8 1go4_E MAD1 (mitotic arrest de 85.8 3.8 0.00013 32.5 8.1 45 139-183 20-90 (100)
9 2jee_A YIIU; FTSZ, septum, coi 85.2 5.7 0.0002 30.4 8.6 57 138-200 20-76 (81)
10 3na7_A HP0958; flagellar bioge 84.7 1.5 5.2E-05 39.1 6.1 26 164-189 128-153 (256)
11 2yy0_A C-MYC-binding protein; 84.7 1.2 4.1E-05 31.3 4.3 30 139-170 20-49 (53)
12 3cvf_A Homer-3, homer protein 84.3 7.2 0.00025 29.6 8.7 58 139-198 14-74 (79)
13 3cve_A Homer protein homolog 1 83.7 7.8 0.00027 29.0 8.6 58 139-198 8-68 (72)
14 1wlq_A Geminin; coiled-coil; 2 82.7 11 0.00037 29.0 9.2 63 128-200 14-83 (83)
15 2dfs_A Myosin-5A; myosin-V, in 82.7 3.7 0.00013 44.2 8.9 18 165-182 1020-1037(1080)
16 3oja_A Leucine-rich immune mol 82.1 29 0.001 32.7 14.3 108 75-195 364-476 (487)
17 2v71_A Nuclear distribution pr 81.4 20 0.00067 31.3 11.6 22 139-160 96-117 (189)
18 3oja_B Anopheles plasmodium-re 76.0 15 0.00052 35.4 10.2 37 161-197 544-580 (597)
19 1l8d_A DNA double-strand break 71.4 29 0.00099 26.5 9.0 26 76-101 15-40 (112)
20 3viq_B Mating-type switching p 71.2 7.8 0.00027 29.9 5.5 54 141-201 4-63 (85)
21 2wvr_A Geminin; DNA replicatio 70.2 29 0.00099 30.8 9.6 69 128-206 91-166 (209)
22 1gk4_A Vimentin; intermediate 69.9 32 0.0011 25.7 8.8 55 139-193 2-58 (84)
23 3tnu_B Keratin, type II cytosk 69.8 2 6.7E-05 34.8 1.9 54 41-96 38-100 (129)
24 1ez3_A Syntaxin-1A; three heli 69.4 37 0.0013 26.2 12.5 32 165-196 92-123 (127)
25 3hnw_A Uncharacterized protein 67.8 34 0.0012 28.1 9.1 26 76-101 73-98 (138)
26 3t98_B Nucleoporin NUP58/NUP45 66.9 42 0.0014 25.9 9.0 32 71-102 5-36 (93)
27 1c1g_A Tropomyosin; contractIl 66.2 46 0.0016 27.2 9.9 17 165-181 115-131 (284)
28 2v4h_A NF-kappa-B essential mo 65.0 18 0.00061 29.1 6.6 21 76-96 29-49 (110)
29 3ghg_A Fibrinogen alpha chain; 64.8 8.4 0.00029 38.6 5.6 62 143-206 115-176 (562)
30 3oja_B Anopheles plasmodium-re 64.7 29 0.00099 33.4 9.4 26 75-100 467-492 (597)
31 1uii_A Geminin; human, DNA rep 64.4 32 0.0011 26.4 7.6 48 128-184 22-76 (83)
32 3o0z_A RHO-associated protein 64.3 45 0.0015 28.6 9.4 35 139-175 98-132 (168)
33 3a7p_A Autophagy protein 16; c 62.1 38 0.0013 28.6 8.4 52 139-190 69-132 (152)
34 3cvf_A Homer-3, homer protein 60.7 52 0.0018 24.9 9.1 67 73-173 8-74 (79)
35 1x8y_A Lamin A/C; structural p 60.1 18 0.00061 27.3 5.6 54 139-192 4-59 (86)
36 3s9g_A Protein hexim1; cyclin 59.6 34 0.0012 27.1 7.2 46 136-183 41-87 (104)
37 3tnu_B Keratin, type II cytosk 59.4 65 0.0022 25.6 9.6 55 139-193 51-107 (129)
38 3efg_A Protein SLYX homolog; x 59.1 14 0.00047 27.7 4.7 22 138-159 42-63 (78)
39 2lf0_A Uncharacterized protein 58.0 13 0.00043 30.5 4.6 37 161-197 36-72 (123)
40 3tnu_A Keratin, type I cytoske 57.5 72 0.0025 25.5 9.6 55 139-193 53-109 (131)
41 4gkw_A Spindle assembly abnorm 56.5 83 0.0028 26.3 9.4 27 162-188 120-146 (167)
42 3mov_A Lamin-B1; LMNB1, B-type 56.5 16 0.00054 28.3 4.8 54 139-192 13-68 (95)
43 3qh9_A Liprin-beta-2; coiled-c 56.1 51 0.0017 25.1 7.4 46 138-183 19-76 (81)
44 2dfs_A Myosin-5A; myosin-V, in 54.7 80 0.0027 33.9 11.4 11 52-62 925-935 (1080)
45 1dip_A Delta-sleep-inducing pe 54.4 18 0.00062 27.3 4.6 39 71-109 15-53 (78)
46 3hnw_A Uncharacterized protein 53.8 41 0.0014 27.6 7.2 20 161-180 110-129 (138)
47 1ci6_A Transcription factor AT 53.5 45 0.0015 23.7 6.5 38 139-185 24-61 (63)
48 1deq_A Fibrinogen (alpha chain 52.9 48 0.0017 31.9 8.4 63 142-206 117-179 (390)
49 1i84_S Smooth muscle myosin he 50.9 5.1 0.00017 43.1 1.5 26 76-101 918-943 (1184)
50 1hjb_A Ccaat/enhancer binding 50.2 69 0.0023 24.5 7.4 27 161-187 50-76 (87)
51 3s4r_A Vimentin; alpha-helix, 49.5 48 0.0016 25.4 6.5 43 139-181 24-76 (93)
52 2j5u_A MREC protein; bacterial 48.6 8.3 0.00028 34.6 2.3 42 136-183 17-58 (255)
53 2zxx_A Geminin; coiled-coil, c 48.0 88 0.003 23.7 8.5 60 128-197 10-76 (79)
54 3azd_A Short alpha-tropomyosin 47.7 7.6 0.00026 25.3 1.4 33 70-102 3-35 (37)
55 3cve_A Homer protein homolog 1 47.3 84 0.0029 23.3 9.5 65 75-173 4-68 (72)
56 3ter_A Mammalian stromal inter 47.3 1E+02 0.0035 25.6 8.5 111 86-204 7-132 (136)
57 2wuj_A Septum site-determining 46.9 21 0.0007 25.0 3.7 30 129-158 20-54 (57)
58 4dzn_A Coiled-coil peptide CC- 46.8 36 0.0012 21.3 4.3 12 140-151 4-15 (33)
59 1x79_B RAB GTPase binding effe 46.2 1.1E+02 0.0039 24.4 10.5 57 139-195 21-79 (112)
60 3he5_A Synzip1; heterodimeric 45.3 49 0.0017 22.3 5.1 41 135-177 6-47 (49)
61 1a93_B MAX protein, coiled coi 44.4 29 0.001 22.4 3.8 28 74-101 3-30 (34)
62 1deb_A APC protein, adenomatou 44.3 77 0.0026 22.2 6.2 21 138-158 10-30 (54)
63 2efr_A General control protein 44.1 1.4E+02 0.0049 25.0 13.5 68 139-206 71-143 (155)
64 2ke4_A CDC42-interacting prote 43.8 83 0.0028 24.4 7.1 27 75-101 19-45 (98)
65 3mdq_A Exopolyphosphatase; str 43.0 10 0.00035 34.6 2.1 48 188-235 91-145 (315)
66 1m1j_C Fibrinogen gamma chain; 42.9 2E+02 0.0069 27.6 11.2 44 143-188 89-132 (409)
67 2v71_A Nuclear distribution pr 41.9 1.7E+02 0.0059 25.3 13.3 85 75-181 21-108 (189)
68 1hjb_A Ccaat/enhancer binding 41.2 37 0.0012 26.0 4.6 30 139-170 44-73 (87)
69 1t2k_D Cyclic-AMP-dependent tr 40.7 73 0.0025 22.1 5.9 20 164-183 39-58 (61)
70 3a2a_A Voltage-gated hydrogen 40.5 84 0.0029 22.4 6.0 28 131-158 2-31 (58)
71 1m1j_A Fibrinogen alpha subuni 40.0 67 0.0023 31.7 7.3 46 161-206 132-177 (491)
72 3m91_A Proteasome-associated A 39.4 22 0.00075 24.8 2.8 29 74-102 19-47 (51)
73 2avr_X Adhesion A; antiparalle 39.4 1.5E+02 0.0052 24.0 10.1 28 133-160 39-66 (119)
74 1ci6_A Transcription factor AT 35.9 92 0.0032 22.0 5.8 29 139-169 31-59 (63)
75 3i00_A HIP-I, huntingtin-inter 35.5 85 0.0029 25.3 6.2 20 139-158 16-35 (120)
76 3u1c_A Tropomyosin alpha-1 cha 35.4 1.5E+02 0.0051 22.7 9.7 18 163-180 81-98 (101)
77 2lw1_A ABC transporter ATP-bin 35.2 1.4E+02 0.0047 22.2 8.7 61 76-156 20-81 (89)
78 3ra3_B P2F; coiled coil domain 35.1 26 0.00089 21.2 2.3 18 141-158 3-20 (28)
79 1gu4_A CAAT/enhancer binding p 34.1 97 0.0033 23.1 5.9 24 162-185 51-74 (78)
80 1g6u_A Domain swapped dimer; d 33.9 1.1E+02 0.0037 20.6 6.1 42 140-184 2-43 (48)
81 3bas_A Myosin heavy chain, str 33.9 1.3E+02 0.0046 22.5 6.8 46 139-184 15-72 (89)
82 2wt7_A Proto-oncogene protein 33.8 1E+02 0.0035 21.6 5.8 20 165-184 41-60 (63)
83 1t2k_D Cyclic-AMP-dependent tr 33.8 1.2E+02 0.004 21.0 6.1 20 139-158 30-49 (61)
84 1wt6_A Myotonin-protein kinase 32.7 1.2E+02 0.004 23.1 6.1 40 139-180 32-71 (81)
85 2jee_A YIIU; FTSZ, septum, coi 32.6 1.4E+02 0.0047 22.7 6.5 39 139-177 28-71 (81)
86 3cer_A Possible exopolyphospha 32.4 13 0.00043 34.6 0.9 48 188-235 104-160 (343)
87 3vkg_A Dynein heavy chain, cyt 32.2 1.6E+02 0.0056 35.5 10.1 8 247-254 2128-2135(3245)
88 3u1c_A Tropomyosin alpha-1 cha 32.1 1.7E+02 0.0058 22.4 10.4 45 140-184 11-60 (101)
89 2akf_A Coronin-1A; coiled coil 31.2 63 0.0022 20.3 3.6 25 162-186 7-31 (32)
90 1fxk_A Prefoldin; archaeal pro 31.0 1.6E+02 0.0055 21.8 9.1 36 165-200 69-107 (107)
91 3s84_A Apolipoprotein A-IV; fo 31.0 2.1E+02 0.0073 25.6 8.8 6 190-195 242-247 (273)
92 2etd_A LEMA protein; bromodoma 30.8 1.8E+02 0.0061 24.4 7.8 37 161-197 103-139 (171)
93 3mq9_A Bone marrow stromal ant 30.6 3.3E+02 0.011 25.3 12.8 21 161-181 450-470 (471)
94 3u59_A Tropomyosin beta chain; 30.4 1.8E+02 0.0061 22.1 10.4 52 139-190 10-66 (101)
95 2yy0_A C-MYC-binding protein; 29.8 27 0.00093 24.3 2.0 32 71-102 19-50 (53)
96 1vcs_A Vesicle transport throu 29.5 1.9E+02 0.0065 22.1 9.4 28 74-101 34-61 (102)
97 1jnm_A Proto-oncogene C-JUN; B 29.4 52 0.0018 23.0 3.5 16 166-181 41-56 (62)
98 2wt7_A Proto-oncogene protein 28.6 1.5E+02 0.0052 20.7 6.5 19 139-157 31-49 (63)
99 2qyw_A Vesicle transport throu 28.1 2E+02 0.0069 22.0 10.1 28 74-101 45-72 (102)
100 3ghg_A Fibrinogen alpha chain; 27.8 1.3E+02 0.0045 30.2 7.2 40 137-176 130-191 (562)
101 3m9b_A Proteasome-associated A 27.3 57 0.0019 29.7 4.2 54 139-192 25-85 (251)
102 2l5g_B Putative uncharacterize 26.7 1.2E+02 0.004 20.4 4.6 33 149-183 6-38 (42)
103 1x8y_A Lamin A/C; structural p 26.3 18 0.00063 27.2 0.7 10 55-64 3-12 (86)
104 3q0x_A Centriole protein; cent 26.3 3.4E+02 0.012 24.0 9.2 65 124-190 152-221 (228)
105 2e4m_C HA-17; botulinum toxin, 26.1 55 0.0019 27.1 3.5 30 205-238 7-37 (146)
106 1zme_C Proline utilization tra 26.1 27 0.00093 24.1 1.5 21 80-100 46-66 (70)
107 3swy_A Cyclic nucleotide-gated 26.1 61 0.0021 22.1 3.2 28 75-102 2-29 (46)
108 3s9g_A Protein hexim1; cyclin 25.8 1.1E+02 0.0037 24.2 5.0 26 77-102 64-89 (104)
109 1dh3_A Transcription factor CR 25.2 97 0.0033 21.4 4.2 19 139-157 30-48 (55)
110 2qfa_C Inner centromere protei 24.8 59 0.002 22.4 2.9 18 178-195 9-26 (47)
111 3a7o_A Autophagy protein 16; c 24.6 1.3E+02 0.0044 22.5 4.9 16 163-178 48-63 (75)
112 3tnu_A Keratin, type I cytoske 24.6 2.6E+02 0.0089 22.1 12.8 31 71-101 38-68 (131)
113 2w6a_A ARF GTPase-activating p 24.2 1.7E+02 0.0059 21.1 5.4 31 162-192 14-44 (63)
114 1rja_A Tyrosine-protein kinase 24.1 1E+02 0.0034 22.8 4.5 34 229-262 59-92 (100)
115 1p9i_A Cortexillin I/GCN4 hybr 23.9 67 0.0023 19.8 2.8 18 139-156 7-24 (31)
116 2c5k_T Syntaxin TLG1, T-snare 23.8 67 0.0023 24.7 3.5 57 130-186 34-93 (95)
117 1t6c_A Exopolyphosphatase; alp 23.8 23 0.00079 32.3 1.0 47 188-235 99-152 (315)
118 1blj_A P55 BLK protein tyrosin 23.6 1.5E+02 0.0051 22.3 5.5 34 229-262 73-106 (114)
119 2v4h_A NF-kappa-B essential mo 23.5 2.5E+02 0.0087 22.4 6.9 14 139-152 46-59 (110)
120 1lq7_A Alpha3W; three helix bu 23.4 1.1E+02 0.0037 21.8 4.2 32 140-171 27-58 (67)
121 2v66_B Nuclear distribution pr 23.3 2.8E+02 0.0096 22.0 9.6 21 139-159 43-63 (111)
122 2eqb_B RAB guanine nucleotide 23.2 2.7E+02 0.0092 21.7 10.8 85 75-186 9-94 (97)
123 1gd2_E Transcription factor PA 23.0 1.9E+02 0.0067 21.0 5.7 40 139-180 30-69 (70)
124 1ses_A Seryl-tRNA synthetase; 22.3 3.1E+02 0.011 25.9 8.6 58 139-197 43-100 (421)
125 1lwu_C Fibrinogen gamma chain; 22.0 2.3E+02 0.0077 26.4 7.4 45 140-186 7-51 (323)
126 4ioe_A Secreted protein ESXB; 22.0 2.1E+02 0.0073 20.1 10.2 68 127-194 7-89 (93)
127 3q8t_A Beclin-1; autophagy, AT 21.9 2.7E+02 0.0091 21.2 10.2 41 139-181 12-52 (96)
128 3he4_A Synzip6; heterodimeric 21.0 1.4E+02 0.0047 20.6 4.2 12 163-174 40-51 (56)
129 1lq7_A Alpha3W; three helix bu 20.9 1.4E+02 0.0048 21.2 4.3 40 140-179 4-43 (67)
130 3viq_B Mating-type switching p 20.8 2.7E+02 0.0092 21.2 6.3 28 74-101 4-31 (85)
131 3m9b_A Proteasome-associated A 20.4 1E+02 0.0034 28.0 4.4 36 139-183 62-97 (251)
132 1fxk_A Prefoldin; archaeal pro 20.3 2.7E+02 0.0091 20.6 9.2 24 132-155 65-89 (107)
No 1
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=100.00 E-value=1.1e-44 Score=300.83 Aligned_cols=116 Identities=43% Similarity=0.788 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhceEEEee-CCeeEEEeeccCCCCCceEEEecC--Ce-eeee
Q psy9275 161 YKAAKLNNKIKSLELQGKRLREVYKAASQEFRETVYLLFGYKVDRT-NCMYKLASMYADGPDENLLFQSTE--GQ-LNLI 236 (284)
Q Consensus 161 ~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFReav~~LlGYkIdf~-ng~~rL~S~Ya~s~ed~LvF~~~~--G~-mkll 236 (284)
+|+++|++||++++||++||||||++||+|||+|||+||||||||. ||+|||+||||++++|||+|++++ |+ |+++
T Consensus 4 ~e~~~l~~qi~~~ekr~~RLKevF~~ks~eFReav~~LlGykId~~~~~~~rl~S~Ya~~~~d~L~F~~~~~~g~~~~ll 83 (123)
T 4dzo_A 4 KEVAELKKQVESAELKNQRLKEVFQTKIQEFRKACYTLTGYQIDITTENQYRLTSLYAEHPGDCLIFKATSPSGSKMQLL 83 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEETTTEEEEEETTCSSTTCCEEEEECC--CCCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeEEEEccCCeEEEEEeecCCCCCeEEEEecCCCCceeeec
Confidence 6899999999999999999999999999999999999999999999 999999999999999999999873 55 9999
Q ss_pred CCcchhhhHHHHHHHhhhCCCchhhhHHhcHHhhhccccc
Q psy9275 237 ETDYSKVLKPLLDLHLGRHHSIPMLLSALTQELFQRQTMS 276 (284)
Q Consensus 237 ~s~f~~~l~~~i~~wl~~~~SIPaFLAALTLeLfek~T~~ 276 (284)
+++|+++|+++|++||++++|||||||||||+||+++|++
T Consensus 84 ~t~f~~~~~~~i~~~l~~~~siP~FLaalTLelfe~~T~~ 123 (123)
T 4dzo_A 84 ETEFSHTVGELIEVHLRRQDSIPAFLSSLTLELFSRQTVA 123 (123)
T ss_dssp CCTTGGGCHHHHHHHTTSSCCHHHHHHHHHHHHHHHHC--
T ss_pred CChhHhHHHHHHHHHHHcCCCCchHhHHHHHHHHhcccCC
Confidence 9999999999999999999999999999999999999975
No 2
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=99.51 E-value=2.1e-14 Score=115.17 Aligned_cols=83 Identities=14% Similarity=0.097 Sum_probs=69.6
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccceeeeeecccCH--HHHHHH-HHHHHHHHHH
Q psy9275 71 APPGSDRAKLEVLEKVIEGYRQRMEHIEADQGLVCVIPGQNSEKVAQQKVQELQMEADNNR--ETVKQM-AGMQKLNSKI 147 (284)
Q Consensus 71 ~~~~~l~~ki~eLE~~l~~~R~~~~~~~~~l~~~~lE~~~~~g~~~~~~tkvlIL~lr~NP--~a~~~~-~~le~Lk~EN 147 (284)
+++..++++|++||.+-+.+|++++.++..| |...++|+|||++|+|+ ||++|| .+.++. .+++.|++||
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~L-----e~~~l~Gd~~~~~TKVl--H~~~NPa~~a~~~~~~~~e~Lq~E~ 84 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQL-----ERRALQGDYDQSRTKVL--HMSLNPTSVARQRLREDHSQLQAEC 84 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHSSCCSCCCTTTEEEE--EESSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhhccccCCccCeee--eecCChHHHHHHHHHHHHHHHHHHH
Confidence 4566799999999988888888888877666 57788999999999886 999999 444444 4999999999
Q ss_pred HHHHHHHhhhhhH
Q psy9275 148 KSLELQGKRLREV 160 (284)
Q Consensus 148 e~L~~~l~~~e~~ 160 (284)
++|+.+++.++++
T Consensus 85 erLr~~v~~lEeg 97 (100)
T 1go4_E 85 ERLRGLLRAMERG 97 (100)
T ss_dssp HHHHHHHTTCC--
T ss_pred HHHHHHHHHHhcc
Confidence 9999999999865
No 3
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=91.75 E-value=0.75 Score=37.52 Aligned_cols=49 Identities=16% Similarity=0.246 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy9275 139 GMQKLNSKIKSLELQGKRLREV-YKAAKLNNKIKSLELQGKRLREVYKAA 187 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~-~E~~~Lk~qi~~~eKr~~RLKEVF~~K 187 (284)
+.+.|+.|.+.|+......... .-+.+.+......+-|.+.||++|++-
T Consensus 69 e~e~Lr~e~~~l~~~~~~~~~~q~~~~e~E~kAqa~Eerf~KLKe~yteL 118 (120)
T 3i00_A 69 DCEFLRAELDELRRQREDTEKAQRSLSEIERKAQANEQRYSKLKEKYSEL 118 (120)
T ss_dssp HHHHHHHHHHHHHTTCC---------------------------------
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555544332222211 123445556667788999999999864
No 4
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=91.28 E-value=3.6 Score=36.62 Aligned_cols=20 Identities=15% Similarity=0.260 Sum_probs=12.5
Q ss_pred CCceEEEecCCeeeeeCCcc
Q psy9275 221 DENLLFQSTEGQLNLIETDY 240 (284)
Q Consensus 221 ed~LvF~~~~G~mkll~s~f 240 (284)
.|.+++-++.|.+=+...+|
T Consensus 219 ~~~Iv~Cp~CgRIL~~~~~~ 238 (256)
T 3na7_A 219 SGDMITCPYCGRILYAEGAY 238 (256)
T ss_dssp SSSCEECTTTCCEEECSCC-
T ss_pred CCCEEECCCCCeeEEeCcch
Confidence 45677777788766655444
No 5
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=88.90 E-value=0.36 Score=44.92 Aligned_cols=112 Identities=13% Similarity=0.244 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHhhceEEEee-CC--eeEEEe
Q psy9275 139 GMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQ-GKRLREVYKAASQEFRETVYLLFGYKVDRT-NC--MYKLAS 214 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi~~~eKr-~~RLKEVF~~Ks~EFReav~~LlGYkIdf~-ng--~~rL~S 214 (284)
+++.|+++|++|.+.+..+ ++++.+..+- -+|++++ ++-.+-+...||.+|+-. ++ +|..+.
T Consensus 186 eie~L~~~~~~L~eEi~~L---------e~~~e~~~k~n~~rl~~L-----qk~~~~~~~~LGl~ie~~~~d~lkf~F~~ 251 (315)
T 2ve7_A 186 KLESLEAKNRALNEQIARL---------EQERSTANKANAERLKRL-----QKSADLYKDRLGLEIRKIYGEKLQFIFTN 251 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHTTTTTH-----HHHHHHHHHHSCCCCC----------CCC
T ss_pred HHHHHHHHHHHHHHHHHHH---------HHHHHhhhhhhHHHHHHH-----HHHHHHHHHHcceEEEeccCCeEEEEEEe
Confidence 5666677777666555443 3333333332 3344433 222355567999999988 34 666666
Q ss_pred eccCCCCCceEEE--ec-CCeeeeeC-CcchhhhHHHHHHHhhhCCCchhhhHHh
Q psy9275 215 MYADGPDENLLFQ--ST-EGQLNLIE-TDYSKVLKPLLDLHLGRHHSIPMLLSAL 265 (284)
Q Consensus 215 ~Ya~s~ed~LvF~--~~-~G~mkll~-s~f~~~l~~~i~~wl~~~~SIPaFLAAL 265 (284)
+=..+|+..+.|. .. ++.-+++. +|-...+++++ .-|+..+.++.||..+
T Consensus 252 id~~d~~re~~f~l~~~~~~~Y~v~~c~P~l~~~~~l~-~~lN~~~d~~~Fl~~~ 305 (315)
T 2ve7_A 252 IDPKNPESPFMFSLHLNEARDYEVSDSAPHLEGLAEFQ-ENVRKTNNFSAFLANV 305 (315)
T ss_dssp C---CCCCCC---------------------------------------------
T ss_pred cCCCCCCceEEEEEEecCCCceEEEecCCCCccHHHHH-HHHhccCCHHHHHHHH
Confidence 6665666554444 44 45667766 33333444443 3456778899998765
No 6
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=87.32 E-value=5.4 Score=47.69 Aligned_cols=62 Identities=13% Similarity=0.206 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhH-----HHHHHHHHHHHhHHHHHHHHHH----------HHHHHHHHHHHHHHHhhc
Q psy9275 139 GMQKLNSKIKSLELQGKRLREV-----YKAAKLNNKIKSLELQGKRLRE----------VYKAASQEFRETVYLLFG 200 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~-----~E~~~Lk~qi~~~eKr~~RLKE----------VF~~Ks~EFReav~~LlG 200 (284)
.+...+++.+++.++|..+... .|...|+.+++..+.|+.|-.. =|++.+.+|......|.|
T Consensus 2029 ~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~L~G 2105 (3245)
T 3vkg_A 2029 KQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTVVG 2105 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhccH
Confidence 5555666666666666665554 6778888888888888877544 488888888765444443
No 7
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=86.97 E-value=3.7 Score=36.04 Aligned_cols=63 Identities=19% Similarity=0.112 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH----HHHHHhhceEEE
Q psy9275 139 GMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRLREVYKAASQEFR----ETVYLLFGYKVD 204 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFR----eav~~LlGYkId 204 (284)
-+..|..||..|..++.... .|+..|+.++++++....+...-.++ -.|=. +-.-.|+|.+|-
T Consensus 21 LV~~L~~En~~L~~ql~~k~--~ei~~L~~ql~sl~~~~~~~~~~~~~-~~e~i~i~~DL~e~LTGl~V~ 87 (190)
T 4emc_A 21 LVANLVNENFVLSEKLDTKA--TEIKQLQKQIDSLNAQVKELKTQTSQ-QAENSEVIKDLYEYLCNVRVH 87 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHSEECC
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhhhhhhhHHHH-HHHhhhHHHHHHHHccCcEEE
Confidence 68899999999999998665 78999999999999999887766654 22222 333345676554
No 8
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=85.80 E-value=3.8 Score=32.53 Aligned_cols=45 Identities=20% Similarity=0.303 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhH--------------------------HHHHHHHHHHHhHHHHHHHHHHH
Q psy9275 139 GMQKLNSKIKSLELQGKRLREV--------------------------YKAAKLNNKIKSLELQGKRLREV 183 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~--------------------------~E~~~Lk~qi~~~eKr~~RLKEV 183 (284)
.++.|+.||++|+.++..++.- .-..+.+..++.+...+.||++-
T Consensus 20 ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~ 90 (100)
T 1go4_E 20 KVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGL 90 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999888776542 11335667788888888888765
No 9
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=85.23 E-value=5.7 Score=30.38 Aligned_cols=57 Identities=19% Similarity=0.331 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy9275 138 AGMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRLREVYKAASQEFRETVYLLFG 200 (284)
Q Consensus 138 ~~le~Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFReav~~LlG 200 (284)
.++..|+-|++.|+.+-..+. .+..+++...+.+...+++|++--+. +.+-+.+|+|
T Consensus 20 dtI~lLqmEieELKekN~~L~--~e~~e~~~~~~~L~~en~qLk~E~~~----wq~Rl~~LLg 76 (81)
T 2jee_A 20 DTITLLQMEIEELKEKNNSLS--QEVQNAQHQREELERENNHLKEQQNG----WQERLQALLG 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHhhhHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 488899999999988876655 66777888888888899999887554 4444555555
No 10
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=84.70 E-value=1.5 Score=39.06 Aligned_cols=26 Identities=15% Similarity=0.224 Sum_probs=10.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy9275 164 AKLNNKIKSLELQGKRLREVYKAASQ 189 (284)
Q Consensus 164 ~~Lk~qi~~~eKr~~RLKEVF~~Ks~ 189 (284)
..++.++...+......+.-+...+.
T Consensus 128 ~~~~~~l~~~~~~l~~~~~~~~~~~~ 153 (256)
T 3na7_A 128 EDLKKEMLELEKLALELESLVENEVK 153 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344443333333333333333
No 11
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=84.69 E-value=1.2 Score=31.32 Aligned_cols=30 Identities=13% Similarity=0.212 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q psy9275 139 GMQKLNSKIKSLELQGKRLREVYKAAKLNNKI 170 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi 170 (284)
++++|+.||+.|+.++..+. .+..+++.++
T Consensus 20 d~eaLk~E~~eLk~k~~~L~--~~~~el~~~l 49 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIV--EENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 78999999999998876554 3444444443
No 12
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=84.27 E-value=7.2 Score=29.63 Aligned_cols=58 Identities=17% Similarity=0.168 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---HHHHHHHh
Q psy9275 139 GMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRLREVYKAASQE---FRETVYLL 198 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~E---FReav~~L 198 (284)
.|..+..+|..|..+|+.++ ..+.+-+.+=..+.....|+.+++.-||.+ ||+...+|
T Consensus 14 klq~~E~rN~~Le~~v~~le--~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLakL 74 (79)
T 3cvf_A 14 KVQDLETRNAELEHQLRAME--RSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLARL 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 68889999999999999888 556666666677778888999999999875 55555553
No 13
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=83.70 E-value=7.8 Score=28.97 Aligned_cols=58 Identities=21% Similarity=0.220 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---HHHHHHHh
Q psy9275 139 GMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRLREVYKAASQE---FRETVYLL 198 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~E---FReav~~L 198 (284)
.|..+..+|..|..+|+.++ ..+.+-+.+=........++.+++.-||.+ ||+...+|
T Consensus 8 kLq~~E~~N~~Le~~v~~le--~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~LakL 68 (72)
T 3cve_A 8 KLQEVEIRNKDLEGQLSEME--QRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLAKL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 68889999999999999888 456666666667777788999999999865 55555553
No 14
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=82.74 E-value=11 Score=28.98 Aligned_cols=63 Identities=19% Similarity=0.172 Sum_probs=44.1
Q ss_pred ccCH--HHHH-----HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy9275 128 DNNR--ETVK-----QMAGMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRLREVYKAASQEFRETVYLLFG 200 (284)
Q Consensus 128 r~NP--~a~~-----~~~~le~Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFReav~~LlG 200 (284)
..|| ..|+ |...|..--.||+.|... +..++.+|..+...+.+|+++=. ..+-+-.+|-.|+|
T Consensus 14 ~e~pse~YWk~lAE~Rr~AL~eaL~EN~~Lh~~---------ie~~~eEi~~Lk~en~~L~elA~-~~q~la~~i~~L~~ 83 (83)
T 1wlq_A 14 KENPSSQYWKEVAEQRRKALYEALKENEKLHKE---------IEQKDSEIARLRKENKDLAEVAE-HVQYMAEVIERLSN 83 (83)
T ss_dssp CCCTTCTHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHTHHHHH-HHHHHHHHHHHTTC
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcC
Confidence 4678 4444 333677777889988755 44677888999999999998743 35666666766665
No 15
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=82.67 E-value=3.7 Score=44.15 Aligned_cols=18 Identities=17% Similarity=0.239 Sum_probs=9.0
Q ss_pred HHHHHHHhHHHHHHHHHH
Q psy9275 165 KLNNKIKSLELQGKRLRE 182 (284)
Q Consensus 165 ~Lk~qi~~~eKr~~RLKE 182 (284)
+|+.++.++++.++.|++
T Consensus 1020 ~L~~kv~~L~~e~~~L~q 1037 (1080)
T 2dfs_A 1020 ETEQLVSELKEQNTLLKT 1037 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444455555555555544
No 16
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=82.14 E-value=29 Score=32.74 Aligned_cols=108 Identities=13% Similarity=0.177 Sum_probs=50.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccc-cccceeeeeecccCH-HHHH-HHHHHHHHHHHHHHHH
Q psy9275 75 SDRAKLEVLEKVIEGYRQRMEHIEADQGLVCVIPGQNSEKVA-QQKVQELQMEADNNR-ETVK-QMAGMQKLNSKIKSLE 151 (284)
Q Consensus 75 ~l~~ki~eLE~~l~~~R~~~~~~~~~l~~~~lE~~~~~g~~~-~~~tkvlIL~lr~NP-~a~~-~~~~le~Lk~ENe~L~ 151 (284)
.+..+-.+||..++..|.........+. ...++++ +..+.+ -+| ...+ .....+.+.++.+..+
T Consensus 364 ~l~~~~~~le~~~~~~~~~~~~~~~~~~-------~~~~~~e~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (487)
T 3oja_A 364 TLEQKKKALDEQVSNGRRAHAELDGTLQ-------QAVGQIELQHATEE------QSPLQLLRAIVKRYEEMYVEQQSVQ 430 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHTTSSCCCCCSSC------CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHH-------Hhhchhhhcccccc------cCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555666666666655555544442 1123343 333322 256 3333 3335666666666666
Q ss_pred HHHhhhhhH--HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy9275 152 LQGKRLREV--YKAAKLNNKIKSLELQGKRLREVYKAASQEFRETV 195 (284)
Q Consensus 152 ~~l~~~e~~--~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFReav 195 (284)
.+....... .++..++++-+.++|-++-+...-..+.+.+.+||
T Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (487)
T 3oja_A 431 NNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELV 476 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHH
Confidence 654433222 23334444444444444444444444444444444
No 17
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=81.37 E-value=20 Score=31.31 Aligned_cols=22 Identities=9% Similarity=0.131 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhH
Q psy9275 139 GMQKLNSKIKSLELQGKRLREV 160 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~ 160 (284)
++..|+.+|..|..+++.++..
T Consensus 96 el~~l~~~~~~l~~~ireLEq~ 117 (189)
T 2v71_A 96 DLSQTRAIKEQLHKYVRELEQA 117 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888888888888754
No 18
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=75.96 E-value=15 Score=35.40 Aligned_cols=37 Identities=11% Similarity=0.117 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9275 161 YKAAKLNNKIKSLELQGKRLREVYKAASQEFRETVYL 197 (284)
Q Consensus 161 ~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFReav~~ 197 (284)
.++.+++.+++...++..++++--....+++.+-...
T Consensus 544 ~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~ 580 (597)
T 3oja_B 544 QENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAK 580 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777777776666655444
No 19
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=71.39 E-value=29 Score=26.52 Aligned_cols=26 Identities=4% Similarity=0.128 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy9275 76 DRAKLEVLEKVIEGYRQRMEHIEADQ 101 (284)
Q Consensus 76 l~~ki~eLE~~l~~~R~~~~~~~~~l 101 (284)
+..++.+|......+++++..+...+
T Consensus 15 ~~~~l~~L~~~~~~l~~~i~~l~~~l 40 (112)
T 1l8d_A 15 IEEERNEITQRIGELKNKIGDLKTAI 40 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555544
No 20
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=71.15 E-value=7.8 Score=29.87 Aligned_cols=54 Identities=22% Similarity=0.293 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHHHHHHHHHHhhce
Q psy9275 141 QKLNSKIKSLELQGKRLREVYKAAKLNNKIK------SLELQGKRLREVYKAASQEFRETVYLLFGY 201 (284)
Q Consensus 141 e~Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi~------~~eKr~~RLKEVF~~Ks~EFReav~~LlGY 201 (284)
+.|+++++.|.++...++ .++.+++.++. ...+-+..|.++ +|.++++..|+|-
T Consensus 4 ~~L~~~i~~L~~q~~~L~--~ei~~~~a~L~~~~~~~~~~~hI~~Lh~Y-----NeiKD~gq~L~g~ 63 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLE--SSLQDALAKLKNRDAKQTVQKHIDLLHTY-----NEIRDIALGMIGK 63 (85)
T ss_dssp HHHHHHHHHHHHHHHHHH--HHHHHHHHTCSSSCHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHhccCCHHHHHHHHHHHHHHH-----hHHHHHHHHHHHH
Confidence 455666666665555444 44444444322 234445555554 6788999998885
No 21
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=70.20 E-value=29 Score=30.75 Aligned_cols=69 Identities=22% Similarity=0.189 Sum_probs=48.9
Q ss_pred ccCH--HHHH-----HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy9275 128 DNNR--ETVK-----QMAGMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRLREVYKAASQEFRETVYLLFG 200 (284)
Q Consensus 128 r~NP--~a~~-----~~~~le~Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFReav~~LlG 200 (284)
..+| ..|+ |+..|..--.||+.|-..+ ..++.+|..+.+.+.+|+++... .+-+-++|-.|+|
T Consensus 91 ~e~Pse~YWk~lAE~RR~AL~eaLeEN~~Lh~~i---------e~l~eEi~~LkeEn~eLkeLae~-~q~la~vi~~l~~ 160 (209)
T 2wvr_A 91 KENPSSQYWKEVAEKRRKALYEALKENEKLHKEI---------EQKDNEIARLKKENKELAEVAEH-VQYMAELIERLNG 160 (209)
T ss_dssp CCSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHC
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhc
Confidence 4577 4444 3336777778899988654 46888999999999999998655 8889999999999
Q ss_pred eEEEee
Q psy9275 201 YKVDRT 206 (284)
Q Consensus 201 YkIdf~ 206 (284)
=..+-.
T Consensus 161 ~~~~~~ 166 (209)
T 2wvr_A 161 EPLDNF 166 (209)
T ss_dssp ------
T ss_pred CCcccc
Confidence 877743
No 22
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=69.89 E-value=32 Score=25.69 Aligned_cols=55 Identities=22% Similarity=0.299 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhH--HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy9275 139 GMQKLNSKIKSLELQGKRLREV--YKAAKLNNKIKSLELQGKRLREVYKAASQEFRE 193 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~--~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFRe 193 (284)
+++.|+..|..|...+...+.. .++.+.+..|..++....+++.--.....+|-+
T Consensus 2 el~~l~~~~~sLE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~ 58 (84)
T 1gk4_A 2 EVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQD 58 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778888888888888877765 446666667777777766666666666666543
No 23
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=69.77 E-value=2 Score=34.79 Aligned_cols=54 Identities=20% Similarity=0.252 Sum_probs=32.0
Q ss_pred HHHHHhhhhhhhHHHHHHHhhcccccccCC---------CCCcchHHHHHHHHHHHHHHHHHHHH
Q psy9275 41 EKELKEKVDHLTYQMEWRALKGNATFSESA---------APPGSDRAKLEVLEKVIEGYRQRMEH 96 (284)
Q Consensus 41 ~~~~~~~~~~~~~e~e~~~lk~~~~~~e~~---------~~~~~l~~ki~eLE~~l~~~R~~~~~ 96 (284)
+.|+++.++ .|+.|+..++++-++.+.+ .++..+..+|..||..++..|..++.
T Consensus 38 i~elrr~iq--~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ 100 (129)
T 3tnu_B 38 ISEMNRMIQ--RLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMAR 100 (129)
T ss_dssp HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 678888888 8888999998886444422 12223444445555555444444433
No 24
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=69.43 E-value=37 Score=26.23 Aligned_cols=32 Identities=16% Similarity=0.201 Sum_probs=27.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9275 165 KLNNKIKSLELQGKRLREVYKAASQEFRETVY 196 (284)
Q Consensus 165 ~Lk~qi~~~eKr~~RLKEVF~~Ks~EFReav~ 196 (284)
--+.++..+.++..-+..-|+..-.+||+.|-
T Consensus 92 ir~~q~~~L~~kf~e~m~~y~~~q~~yre~~k 123 (127)
T 1ez3_A 92 IRKTQHSTLSRKFVEVMSEYNATQSDYRERCK 123 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34668899999999999999999999999885
No 25
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=67.80 E-value=34 Score=28.09 Aligned_cols=26 Identities=12% Similarity=0.160 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy9275 76 DRAKLEVLEKVIEGYRQRMEHIEADQ 101 (284)
Q Consensus 76 l~~ki~eLE~~l~~~R~~~~~~~~~l 101 (284)
+..+++.|+..++.+..++..+..++
T Consensus 73 ~~~~~~~L~~~l~~~~kE~~~lK~el 98 (138)
T 3hnw_A 73 AKKMADSLSLDIENKDKEIYDLKHEL 98 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555544444444444
No 26
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=66.87 E-value=42 Score=25.93 Aligned_cols=32 Identities=28% Similarity=0.451 Sum_probs=27.8
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy9275 71 APPGSDRAKLEVLEKVIEGYRQRMEHIEADQG 102 (284)
Q Consensus 71 ~~~~~l~~ki~eLE~~l~~~R~~~~~~~~~l~ 102 (284)
+|.....+.|.+.|.-|+.||+.+++++..+.
T Consensus 5 ~P~~yF~~lv~~fe~rL~~Yr~~IeelE~~L~ 36 (93)
T 3t98_B 5 APADYFRVLVQQFEVQLQQYRQQIEELENHLA 36 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456889999999999999999999999984
No 27
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=66.21 E-value=46 Score=27.23 Aligned_cols=17 Identities=12% Similarity=0.010 Sum_probs=6.9
Q ss_pred HHHHHHHhHHHHHHHHH
Q psy9275 165 KLNNKIKSLELQGKRLR 181 (284)
Q Consensus 165 ~Lk~qi~~~eKr~~RLK 181 (284)
.+..++..++.....+.
T Consensus 115 ~~~~~l~~~~~~~~~~~ 131 (284)
T 1c1g_A 115 EAEKAADESERGMKVIE 131 (284)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444444333
No 28
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=65.04 E-value=18 Score=29.14 Aligned_cols=21 Identities=14% Similarity=0.256 Sum_probs=8.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q psy9275 76 DRAKLEVLEKVIEGYRQRMEH 96 (284)
Q Consensus 76 l~~ki~eLE~~l~~~R~~~~~ 96 (284)
|..++...|+.|+.-...+..
T Consensus 29 L~~~L~~AEeaL~~Kq~~ide 49 (110)
T 2v4h_A 29 LRQQLQQAEEALVAKQELIDK 49 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444443333333
No 29
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=64.79 E-value=8.4 Score=38.65 Aligned_cols=62 Identities=18% Similarity=0.141 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhceEEEee
Q psy9275 143 LNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRLREVYKAASQEFRETVYLLFGYKVDRT 206 (284)
Q Consensus 143 Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFReav~~LlGYkIdf~ 206 (284)
|+.-.+.|+.+|...- .-+..||.-|+.+-.+|+||---...|+..=|.-|...+-|+||..
T Consensus 115 LRRrIqyLKekVdnQl--snIrvLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~ 176 (562)
T 3ghg_A 115 LRSRIEVLKRKVIEKV--QHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLK 176 (562)
T ss_dssp HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHH
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchheeecchH
Confidence 3444444444433222 4567899999999999999999999999999999999999999987
No 30
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=64.66 E-value=29 Score=33.41 Aligned_cols=26 Identities=8% Similarity=0.088 Sum_probs=13.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9275 75 SDRAKLEVLEKVIEGYRQRMEHIEAD 100 (284)
Q Consensus 75 ~l~~ki~eLE~~l~~~R~~~~~~~~~ 100 (284)
.+..++...|+.+...++.+.....+
T Consensus 467 ~l~~~~~~~~~~l~~~~~~i~~~~~~ 492 (597)
T 3oja_B 467 QLTNEQIQQEQLLQGLHAEIDTNLRR 492 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 45555555555555555555443333
No 31
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=64.45 E-value=32 Score=26.36 Aligned_cols=48 Identities=21% Similarity=0.212 Sum_probs=34.0
Q ss_pred ccCH--HHHH-----HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy9275 128 DNNR--ETVK-----QMAGMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRLREVY 184 (284)
Q Consensus 128 r~NP--~a~~-----~~~~le~Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi~~~eKr~~RLKEVF 184 (284)
..+| ..|+ |+.-|..--.||+.|..++. .++.++..+.+.+++|+++-
T Consensus 22 ~e~Pse~YWk~lAE~RR~AL~eaL~EN~~Lh~~ie---------~l~eEi~~lk~en~eL~ela 76 (83)
T 1uii_A 22 KENPSSQYWKEVAEKRRKALYEALKENEKLHKEIE---------QKDNEIARLKKENKELAEVA 76 (83)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH
Confidence 5688 4454 33367777788999886654 67788888888888888864
No 32
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=64.31 E-value=45 Score=28.58 Aligned_cols=35 Identities=11% Similarity=0.223 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHH
Q psy9275 139 GMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLEL 175 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi~~~eK 175 (284)
.+..|..|.++++.++..... +...|...|..+||
T Consensus 98 ri~~L~~El~~~k~~~~k~~~--e~r~L~Ekl~~lEK 132 (168)
T 3o0z_A 98 RITSLQEEVKHLKHNLEKVEG--ERKEAQDMLNHSEK 132 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 688899999999988888774 44444444444444
No 33
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=62.06 E-value=38 Score=28.62 Aligned_cols=52 Identities=19% Similarity=0.140 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhH------------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy9275 139 GMQKLNSKIKSLELQGKRLREV------------YKAAKLNNKIKSLELQGKRLREVYKAASQE 190 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~------------~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~E 190 (284)
.+..|+.|+..|..++..++.. .|+..|+-+...++.+..+|++-...-+..
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~R 132 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVAR 132 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888888888887753 567777778888888888888765544443
No 34
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=60.65 E-value=52 Score=24.85 Aligned_cols=67 Identities=10% Similarity=0.125 Sum_probs=43.6
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccceeeeeecccCHHHHHHHHHHHHHHHHHHHHHH
Q psy9275 73 PGSDRAKLEVLEKVIEGYRQRMEHIEADQGLVCVIPGQNSEKVAQQKVQELQMEADNNRETVKQMAGMQKLNSKIKSLEL 152 (284)
Q Consensus 73 ~~~l~~ki~eLE~~l~~~R~~~~~~~~~l~~~~lE~~~~~g~~~~~~tkvlIL~lr~NP~a~~~~~~le~Lk~ENe~L~~ 152 (284)
.+.+..|++++|..=+++..++..++.+++ .....-+.++.|.+.+.+
T Consensus 8 ~e~~~~klq~~E~rN~~Le~~v~~le~~Le--------------------------------~s~~~q~~~~~Elk~l~e 55 (79)
T 3cvf_A 8 REETQQKVQDLETRNAELEHQLRAMERSLE--------------------------------EARAERERARAEVGRAAQ 55 (79)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--------------------------------HHHHHHHHHHHHHHHHHH
Confidence 456778888888777777777777777764 111145567777777776
Q ss_pred HHhhhhhHHHHHHHHHHHHhH
Q psy9275 153 QGKRLREVYKAAKLNNKIKSL 173 (284)
Q Consensus 153 ~l~~~e~~~E~~~Lk~qi~~~ 173 (284)
.+...- +|+.+|+..++++
T Consensus 56 ~Ld~KI--~eL~elRqgLakL 74 (79)
T 3cvf_A 56 LLDVSL--FELSELREGLARL 74 (79)
T ss_dssp HHHHHH--HHHHHHHHHHHHH
T ss_pred HHhhHH--HHHHHHHHHHHHh
Confidence 664322 6777777777654
No 35
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=60.10 E-value=18 Score=27.32 Aligned_cols=54 Identities=11% Similarity=0.185 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhH--HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy9275 139 GMQKLNSKIKSLELQGKRLREV--YKAAKLNNKIKSLELQGKRLREVYKAASQEFR 192 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~--~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFR 192 (284)
+++.|+..+..|...+...+.. .++.+++..|..++....+++.--.....+|-
T Consensus 4 eie~L~~q~~~Le~~l~e~E~~~~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq 59 (86)
T 1x8y_A 4 QLSQLQCQLAAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRARMQQQLDEYQ 59 (86)
T ss_dssp --------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666655544 34555555555555555555555544444443
No 36
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=59.61 E-value=34 Score=27.14 Aligned_cols=46 Identities=15% Similarity=0.280 Sum_probs=36.0
Q ss_pred HHH-HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHH
Q psy9275 136 QMA-GMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRLREV 183 (284)
Q Consensus 136 ~~~-~le~Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi~~~eKr~~RLKEV 183 (284)
.++ .++.+..||.+|+..-. ..+..+.+|..+|..+...|+||..-
T Consensus 41 ~LE~~~s~le~e~~rlr~~~~--~~~~~v~eLe~everL~~ENq~L~~e 87 (104)
T 3s9g_A 41 ELEKSLSRMEDENNRLRLESK--RLDARVRELELELDRLRAENLQLLTE 87 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc--cchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 444 78899999999987732 33477889999999999999998753
No 37
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=59.40 E-value=65 Score=25.61 Aligned_cols=55 Identities=13% Similarity=0.159 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhH--HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy9275 139 GMQKLNSKIKSLELQGKRLREV--YKAAKLNNKIKSLELQGKRLREVYKAASQEFRE 193 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~--~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFRe 193 (284)
+++.|+.-|..|...+...+.. .++..++..|..++....+++.--.....+|-+
T Consensus 51 el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~ 107 (129)
T 3tnu_B 51 EIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARLLREYQE 107 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555443 446667777777777777777666666666543
No 38
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=59.13 E-value=14 Score=27.73 Aligned_cols=22 Identities=14% Similarity=0.021 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh
Q psy9275 138 AGMQKLNSKIKSLELQGKRLRE 159 (284)
Q Consensus 138 ~~le~Lk~ENe~L~~~l~~~e~ 159 (284)
.+++.|+..+..|..++...+.
T Consensus 42 ~~Id~L~~ql~~L~~rl~~~~~ 63 (78)
T 3efg_A 42 LTGARNAELIRHLLEDLGKVRS 63 (78)
T ss_dssp HHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 3799999999999999887664
No 39
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=58.05 E-value=13 Score=30.49 Aligned_cols=37 Identities=27% Similarity=0.224 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9275 161 YKAAKLNNKIKSLELQGKRLREVYKAASQEFRETVYL 197 (284)
Q Consensus 161 ~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFReav~~ 197 (284)
.-++++..+++.+++++.|||.+-..+.+.=+..+..
T Consensus 36 ~~i~qf~~E~~~l~k~I~~lk~~q~~~lske~~~l~~ 72 (123)
T 2lf0_A 36 DKYAELEKEKATLEAEIARLREVHSQKLSKEAQKLMK 72 (123)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHc
Confidence 3488999999999999999999987765555544443
No 40
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=57.50 E-value=72 Score=25.48 Aligned_cols=55 Identities=25% Similarity=0.196 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhH--HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy9275 139 GMQKLNSKIKSLELQGKRLREV--YKAAKLNNKIKSLELQGKRLREVYKAASQEFRE 193 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~--~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFRe 193 (284)
+++.++.-|..|...+...+.. .++...+..|..++....+++.--.....+|-+
T Consensus 53 el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~ 109 (131)
T 3tnu_A 53 ELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKI 109 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666665554 456666777777777777777666666666543
No 41
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=56.52 E-value=83 Score=26.32 Aligned_cols=27 Identities=11% Similarity=0.214 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy9275 162 KAAKLNNKIKSLELQGKRLREVYKAAS 188 (284)
Q Consensus 162 E~~~Lk~qi~~~eKr~~RLKEVF~~Ks 188 (284)
.+..|+++++.-..+.+--+.-|-+-.
T Consensus 120 TiG~LrKELEdEklK~~E~MdSFE~Lk 146 (167)
T 4gkw_A 120 TIGILRKELENEKLKAAENMDSFEKLS 146 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 366777777777777777776666543
No 42
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=56.51 E-value=16 Score=28.34 Aligned_cols=54 Identities=6% Similarity=0.053 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhH--HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy9275 139 GMQKLNSKIKSLELQGKRLREV--YKAAKLNNKIKSLELQGKRLREVYKAASQEFR 192 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~--~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFR 192 (284)
++..|+..|..|...+...+.. .++..++..|..++....+++.--.....+|.
T Consensus 13 ~~~~Lq~~~~~LE~~l~e~E~~~~~e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq 68 (95)
T 3mov_A 13 LYFQGQKESRACLERIQELEDLLAKEKDNSRRMLTDKEREMAEIRDQMQQQLNDYE 68 (95)
T ss_dssp -----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777777664 44555555555555555555555444444443
No 43
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=56.07 E-value=51 Score=25.13 Aligned_cols=46 Identities=15% Similarity=0.262 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhH------------HHHHHHHHHHHhHHHHHHHHHHH
Q psy9275 138 AGMQKLNSKIKSLELQGKRLREV------------YKAAKLNNKIKSLELQGKRLREV 183 (284)
Q Consensus 138 ~~le~Lk~ENe~L~~~l~~~e~~------------~E~~~Lk~qi~~~eKr~~RLKEV 183 (284)
..-+-|-.|...|+-++..++.. .|++.|+.+++..+.-+.||.+-
T Consensus 19 ~~~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~ 76 (81)
T 3qh9_A 19 RKAEELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQ 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 34567888888888888887764 56888899999888888888763
No 44
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=54.72 E-value=80 Score=33.91 Aligned_cols=11 Identities=9% Similarity=0.015 Sum_probs=0.0
Q ss_pred hHHHHHHHhhc
Q psy9275 52 TYQMEWRALKG 62 (284)
Q Consensus 52 ~~e~e~~~lk~ 62 (284)
-||.++..|+.
T Consensus 925 ~LE~kl~eLq~ 935 (1080)
T 2dfs_A 925 GLENKIMQLQR 935 (1080)
T ss_dssp -----------
T ss_pred HHHHHHHHHHH
Confidence 33444444433
No 45
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=54.45 E-value=18 Score=27.28 Aligned_cols=39 Identities=3% Similarity=-0.166 Sum_probs=30.2
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Q psy9275 71 APPGSDRAKLEVLEKVIEGYRQRMEHIEADQGLVCVIPG 109 (284)
Q Consensus 71 ~~~~~l~~ki~eLE~~l~~~R~~~~~~~~~l~~~~lE~~ 109 (284)
++|+.|+.+|.+|++-+..+..++..+..-..-.++..+
T Consensus 15 EEVevLKe~I~EL~e~~~qLE~EN~~Lk~~aspEql~q~ 53 (78)
T 1dip_A 15 EEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKF 53 (78)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 678999999999999988888888888766542344444
No 46
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=53.79 E-value=41 Score=27.56 Aligned_cols=20 Identities=15% Similarity=0.197 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHhHHHHHHHH
Q psy9275 161 YKAAKLNNKIKSLELQGKRL 180 (284)
Q Consensus 161 ~E~~~Lk~qi~~~eKr~~RL 180 (284)
.++.+++.++..+++++.+|
T Consensus 110 ~e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 110 KEIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56667777777777777776
No 47
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=53.51 E-value=45 Score=23.68 Aligned_cols=38 Identities=24% Similarity=0.323 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy9275 139 GMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRLREVYK 185 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi~~~eKr~~RLKEVF~ 185 (284)
..+.|..+.+.|. .+..+|+.+|..++..+.-||+++.
T Consensus 24 ~~~~le~~~~~L~---------~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 24 EQEALTGECKELE---------KKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555555555554 3445677777777777777777653
No 48
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=52.93 E-value=48 Score=31.91 Aligned_cols=63 Identities=17% Similarity=0.133 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhceEEEee
Q psy9275 142 KLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRLREVYKAASQEFRETVYLLFGYKVDRT 206 (284)
Q Consensus 142 ~Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFReav~~LlGYkIdf~ 206 (284)
.|+.-..-|+.++...- ..+..|+..|+.+-.+|+||--...-++.--.-+|.--+=|+||..
T Consensus 117 eLe~~i~~lk~~V~~q~--~~ir~Lq~~l~~q~~kiqRLE~~Id~c~~~C~~sC~~~l~~~vD~e 179 (390)
T 1deq_A 117 DLRSRIEILRRKVIEQV--QRINLLQKNVRDQLVDMKRLEVDIDIKIRSCKGSCSRALEHKVDLE 179 (390)
T ss_pred HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhccHH
Confidence 34444444444443322 4677889999999999999988776666666678888899999987
No 49
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=50.91 E-value=5.1 Score=43.11 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy9275 76 DRAKLEVLEKVIEGYRQRMEHIEADQ 101 (284)
Q Consensus 76 l~~ki~eLE~~l~~~R~~~~~~~~~l 101 (284)
+..++.+|+..++.+..+++..+..+
T Consensus 918 l~~~~~~Le~~l~ele~elee~ee~l 943 (1184)
T 1i84_S 918 LAAKKQELEEILHEMEARIEEEEERS 943 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555554444433
No 50
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=50.23 E-value=69 Score=24.46 Aligned_cols=27 Identities=22% Similarity=0.397 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy9275 161 YKAAKLNNKIKSLELQGKRLREVYKAA 187 (284)
Q Consensus 161 ~E~~~Lk~qi~~~eKr~~RLKEVF~~K 187 (284)
.|-..|+.+|+.+++....|+++|...
T Consensus 50 ~EN~~Lr~~v~~L~~E~~~Lr~ll~~~ 76 (87)
T 1hjb_A 50 AENERLQKKVEQLSRELSTLRNLFKQL 76 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 445566777778888888888888763
No 51
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=49.54 E-value=48 Score=25.38 Aligned_cols=43 Identities=16% Similarity=0.186 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhH----------HHHHHHHHHHHhHHHHHHHHH
Q psy9275 139 GMQKLNSKIKSLELQGKRLREV----------YKAAKLNNKIKSLELQGKRLR 181 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~----------~E~~~Lk~qi~~~eKr~~RLK 181 (284)
.+-.|.++|..|..++...... .++.+|+.+|..+.....||.
T Consensus 24 KVR~LEqqN~~Le~~i~~l~~~~~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~ 76 (93)
T 3s4r_A 24 KVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVE 76 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777666544321 457777777777766666654
No 52
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=48.62 E-value=8.3 Score=34.57 Aligned_cols=42 Identities=17% Similarity=0.303 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHH
Q psy9275 136 QMAGMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRLREV 183 (284)
Q Consensus 136 ~~~~le~Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi~~~eKr~~RLKEV 183 (284)
....+..|++||++|++++..++ ....++..++..+.||++.
T Consensus 17 ~~~~~~~l~~eN~~Lk~e~~~l~------~~~~~~~~l~~En~rLr~l 58 (255)
T 2j5u_A 17 GVVDLKNTYTENQHLKERLEELA------QLESEVADLKKENKDLKES 58 (255)
T ss_dssp ---------CTTTTHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
Confidence 33467778888888887765443 4555677788888999886
No 53
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=47.97 E-value=88 Score=23.66 Aligned_cols=60 Identities=18% Similarity=0.151 Sum_probs=37.4
Q ss_pred ccCH--HHHH-----HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9275 128 DNNR--ETVK-----QMAGMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRLREVYKAASQEFRETVYL 197 (284)
Q Consensus 128 r~NP--~a~~-----~~~~le~Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFReav~~ 197 (284)
..|| ..|+ |+..|..--.||+.|-..+ .+++.+|..+...+..|+++-.. .+-+-+++-.
T Consensus 10 ~e~Pse~YWk~lAE~RR~AL~eaL~EN~~Lh~~i---------e~~~eEi~~LkeEN~~L~el~~~-~~~laevl~~ 76 (79)
T 2zxx_A 10 KENPSSQYWKEVAEQRRKALYEALKENEKLHKEI---------EQKDSEIARLRKENKDLAEVAEH-VQYMAEVIER 76 (79)
T ss_dssp CCCTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTHHHHHH-HHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 4688 4444 3335666667888887554 46667777777777778777443 4444444443
No 54
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=47.73 E-value=7.6 Score=25.27 Aligned_cols=33 Identities=12% Similarity=0.145 Sum_probs=26.7
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy9275 70 AAPPGSDRAKLEVLEKVIEGYRQRMEHIEADQG 102 (284)
Q Consensus 70 ~~~~~~l~~ki~eLE~~l~~~R~~~~~~~~~l~ 102 (284)
+++++++.+||+.|+...|.+.+++..+..+++
T Consensus 3 ~~~i~avKkKiq~lq~q~d~aee~~~~~~~~l~ 35 (37)
T 3azd_A 3 SSSLEAVRRKIRSLQEQNYHLENEVARLKKLVG 35 (37)
T ss_dssp ---CHHHHHHHHHHHHHTTTTHHHHHHHHTTTC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356778999999999999999999998887764
No 55
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=47.33 E-value=84 Score=23.29 Aligned_cols=65 Identities=15% Similarity=0.199 Sum_probs=40.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccceeeeeecccCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9275 75 SDRAKLEVLEKVIEGYRQRMEHIEADQGLVCVIPGQNSEKVAQQKVQELQMEADNNRETVKQMAGMQKLNSKIKSLELQG 154 (284)
Q Consensus 75 ~l~~ki~eLE~~l~~~R~~~~~~~~~l~~~~lE~~~~~g~~~~~~tkvlIL~lr~NP~a~~~~~~le~Lk~ENe~L~~~l 154 (284)
.+..|++++|..=+.+..++..++.+++ .....-+.++.|.+.+.+.+
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le--------------------------------~s~~~q~~~~~Elk~~~e~L 51 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQRLE--------------------------------KSQSEQDAFRSNLKTLLEIL 51 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------------HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHH--------------------------------HHHHHHHHHHHHHHHHHHHH
Confidence 4567777777776677777777666664 11113555667777766665
Q ss_pred hhhhhHHHHHHHHHHHHhH
Q psy9275 155 KRLREVYKAAKLNNKIKSL 173 (284)
Q Consensus 155 ~~~e~~~E~~~Lk~qi~~~ 173 (284)
...- +|+.+++..++++
T Consensus 52 d~KI--~eL~elrq~LakL 68 (72)
T 3cve_A 52 DGKI--FELTELRDNLAKL 68 (72)
T ss_dssp HHHH--HHHHHHHHHHHHH
T ss_pred hhHH--HHHHHHHHHHHHh
Confidence 4222 6777777776653
No 56
>3ter_A Mammalian stromal interaction molecule-1; dimer, metal binding protein; 2.55A {Caenorhabditis elegans}
Probab=47.31 E-value=1e+02 Score=25.57 Aligned_cols=111 Identities=13% Similarity=0.187 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHhhcccccccccccccccccccceeeeeecccCHHH-----HH-HHH-HHHHHHHHHHHHHHHHhhhh
Q psy9275 86 VIEGYRQRMEHIEADQGLVCVIPGQNSEKVAQQKVQELQMEADNNRET-----VK-QMA-GMQKLNSKIKSLELQGKRLR 158 (284)
Q Consensus 86 ~l~~~R~~~~~~~~~l~~~~lE~~~~~g~~~~~~tkvlIL~lr~NP~a-----~~-~~~-~le~Lk~ENe~L~~~l~~~e 158 (284)
+++..|..+...+.+|+. .. ++-..|..-+- -||+...++. ++ ... ++..-++.+++|+.+-...=
T Consensus 7 Ele~lr~aL~~AE~eLe~-----~~-~~w~~p~~Lq~-wLq~T~E~E~q~~~~kk~~Aekql~~Ake~~eKlkKKrsSv~ 79 (136)
T 3ter_A 7 EMENLRVQLEEAERRLEA-----NS-NGSQAPLALQP-LLRRTCENEMAFLEKQRQDCFKEMKEAIEMVDRLQKKQGSVL 79 (136)
T ss_dssp HHHHHHHHHHHHHHHHC-----------CCCCTTHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHh-----cC-CCcCCCHHHHH-HHHHHhHHHHHHHHHccccHHHHHHHHHHHHHHHHHhhhchh
Confidence 344889888888888751 00 12223333222 2566666622 22 122 78888888999887633321
Q ss_pred h------H--HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhceEEE
Q psy9275 159 E------V--YKAAKLNNKIKSLELQGKRLREVYKAASQEFRETVYLLFGYKVD 204 (284)
Q Consensus 159 ~------~--~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFReav~~LlGYkId 204 (284)
. + ..++++-..|-++...+...-..-......+.+ |-+|+||.|-
T Consensus 80 gs~~~aHs~~sslD~vD~~Il~Ak~aL~evt~~l~Er~~RW~q-IE~LcgF~iv 132 (136)
T 3ter_A 80 SSLKLATGAASTSDQVDSKIFALKSRMEKIHTLTRETQERWLQ-IESLCGFPLL 132 (136)
T ss_dssp -CCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHTSCCC
T ss_pred eeeeeecCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCcCc
Confidence 1 1 345555556655555555444444443333332 6778888764
No 57
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=46.94 E-value=21 Score=25.03 Aligned_cols=30 Identities=20% Similarity=0.187 Sum_probs=22.1
Q ss_pred cCH----HHHHHHH-HHHHHHHHHHHHHHHHhhhh
Q psy9275 129 NNR----ETVKQMA-GMQKLNSKIKSLELQGKRLR 158 (284)
Q Consensus 129 ~NP----~a~~~~~-~le~Lk~ENe~L~~~l~~~e 158 (284)
-|| ++.++.. +++.|..||.+|+.++..++
T Consensus 20 Y~~~EVD~FLd~v~~~~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 20 YDEDEVNEFLAQVRKDYEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378 4445555 89999999999999988765
No 58
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=46.76 E-value=36 Score=21.32 Aligned_cols=12 Identities=25% Similarity=0.501 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHH
Q psy9275 140 MQKLNSKIKSLE 151 (284)
Q Consensus 140 le~Lk~ENe~L~ 151 (284)
+.+|+.|+..|+
T Consensus 4 iaalkqeiaalk 15 (33)
T 4dzn_A 4 IAALKQEIAALK 15 (33)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444444
No 59
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=46.23 E-value=1.1e+02 Score=24.43 Aligned_cols=57 Identities=18% Similarity=0.135 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhH--HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy9275 139 GMQKLNSKIKSLELQGKRLREV--YKAAKLNNKIKSLELQGKRLREVYKAASQEFRETV 195 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~--~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFReav 195 (284)
+|+.+.++-..|...+....+. .+++.|..++...|.-..=|...|...-.+-++-.
T Consensus 21 qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL 79 (112)
T 1x79_B 21 QLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQM 79 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444333332 77999999999999999999999988655554433
No 60
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=45.27 E-value=49 Score=22.35 Aligned_cols=41 Identities=17% Similarity=0.182 Sum_probs=24.0
Q ss_pred HHHH-HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHH
Q psy9275 135 KQMA-GMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQG 177 (284)
Q Consensus 135 ~~~~-~le~Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi~~~eKr~ 177 (284)
.+++ ++..|..||+-|+.+--... .-++-|+++|+.+.|++
T Consensus 6 aqlenevaslenenetlkkknlhkk--dliaylekeianlrkki 47 (49)
T 3he5_A 6 AQLENEVASLENENETLKKKNLHKK--DLIAYLEKEIANLRKKI 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccHHHHHhcccHH--HHHHHHHHHHHHHHHHh
Confidence 3555 78888899998875522111 22445566666655554
No 61
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=44.36 E-value=29 Score=22.40 Aligned_cols=28 Identities=18% Similarity=0.280 Sum_probs=24.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy9275 74 GSDRAKLEVLEKVIEGYRQRMEHIEADQ 101 (284)
Q Consensus 74 ~~l~~ki~eLE~~l~~~R~~~~~~~~~l 101 (284)
..+++|+.+....|++++.+++.++...
T Consensus 3 ~~mRrKn~a~qqDIddlkrQN~~Le~Qi 30 (34)
T 1a93_B 3 GGMRRKNDTHQQDIDDLKRQNALLEQQV 30 (34)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhhhHhhHhhHHHHHHHHHHHHHHH
Confidence 4689999999999999999999988765
No 62
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=44.34 E-value=77 Score=22.23 Aligned_cols=21 Identities=10% Similarity=0.036 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q psy9275 138 AGMQKLNSKIKSLELQGKRLR 158 (284)
Q Consensus 138 ~~le~Lk~ENe~L~~~l~~~e 158 (284)
.+++.|+.||.-|+..|....
T Consensus 10 ~QVe~Lk~ENshLrrEL~dNS 30 (54)
T 1deb_A 10 KQVEALKMENSNLRQELEDNS 30 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHhhH
Confidence 379999999999998776554
No 63
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=44.08 E-value=1.4e+02 Score=24.99 Aligned_cols=68 Identities=22% Similarity=0.131 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhH-----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhceEEEee
Q psy9275 139 GMQKLNSKIKSLELQGKRLREV-----YKAAKLNNKIKSLELQGKRLREVYKAASQEFRETVYLLFGYKVDRT 206 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~-----~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFReav~~LlGYkIdf~ 206 (284)
.-+.+..++..|..++...+.- ..+..|+..|..++-+...-|+-|..-..+...+...|.|+..+|.
T Consensus 71 rEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~ 143 (155)
T 2efr_A 71 KEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNY 143 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchH
Confidence 4566777777777777766654 4578888899999998888899999988999898888888765554
No 64
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=43.78 E-value=83 Score=24.41 Aligned_cols=27 Identities=11% Similarity=0.094 Sum_probs=19.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy9275 75 SDRAKLEVLEKVIEGYRQRMEHIEADQ 101 (284)
Q Consensus 75 ~l~~ki~eLE~~l~~~R~~~~~~~~~l 101 (284)
.+..||.+|+..|+...+.-+-+.+..
T Consensus 19 kL~~Ki~el~~ei~ke~~~regl~Km~ 45 (98)
T 2ke4_A 19 RLQQQLEERSRELQKEVDQREALKKMK 45 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477778888877777777666666554
No 65
>3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii}
Probab=42.98 E-value=10 Score=34.59 Aligned_cols=48 Identities=8% Similarity=0.066 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhhceEEEeeC----CeeEE---EeeccCCCCCceEEEecCCeeee
Q psy9275 188 SQEFRETVYLLFGYKVDRTN----CMYKL---ASMYADGPDENLLFQSTEGQLNL 235 (284)
Q Consensus 188 s~EFReav~~LlGYkIdf~n----g~~rL---~S~Ya~s~ed~LvF~~~~G~mkl 235 (284)
..+|.+.|...+|+.|++.+ .++.. .+.+..++.+.+++|..+|++++
T Consensus 91 ~~~fl~~i~~~tG~~i~vIsG~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl 145 (315)
T 3mdq_A 91 KQVLIDRIKKEVNIDVEVIDGAREAELIFRGVQQAVPMEDHISLAMDIGGGSVEF 145 (315)
T ss_dssp HHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHSCCTTCCEEEEEECSSCEEE
T ss_pred HHHHHHHHHHHHCCCeEEeCHHHHHHHHHHHHHhcCCCCCCCEEEEEeCCCceEE
Confidence 46899999999999999992 23222 23333334578999999887666
No 66
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=42.89 E-value=2e+02 Score=27.56 Aligned_cols=44 Identities=9% Similarity=-0.065 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy9275 143 LNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRLREVYKAAS 188 (284)
Q Consensus 143 Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks 188 (284)
+..|..+|...+...+ ..+..|+..+.+.+.+++.|++....-.
T Consensus 89 ml~~~~~~e~~~~~~~--~~i~~l~~~~~~~~~~i~~l~~~i~~l~ 132 (409)
T 1m1j_C 89 IIEEIIRYENTILAHE--NTIQQLTDMHIMNSNKITQLKQKIAQLE 132 (409)
T ss_dssp HHHHHHHTHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcchH--HHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4444444544443333 5678888888888888888877655443
No 67
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=41.85 E-value=1.7e+02 Score=25.30 Aligned_cols=85 Identities=11% Similarity=0.211 Sum_probs=52.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccceeeeeecccCHHHHHHH-HHHHHHHHHHHHHHHH
Q psy9275 75 SDRAKLEVLEKVIEGYRQRMEHIEADQGLVCVIPGQNSEKVAQQKVQELQMEADNNRETVKQM-AGMQKLNSKIKSLELQ 153 (284)
Q Consensus 75 ~l~~ki~eLE~~l~~~R~~~~~~~~~l~~~~lE~~~~~g~~~~~~tkvlIL~lr~NP~a~~~~-~~le~Lk~ENe~L~~~ 153 (284)
.+..++.+|+.+++.+++.-..++++|+ .++++...+. +.+ ..+..|+.|++.++.+
T Consensus 21 ~~~q~~~~le~El~EFqesSrELE~ELE----------~eL~~~Ek~~------------~~L~~~~~~L~~E~e~~k~K 78 (189)
T 2v71_A 21 KYKQSFQEARDELVEFQEGSRELEAELE----------AQLVQAEQRN------------RDLQADNQRLKYEVEALKEK 78 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHH
Confidence 4667889999999999999999999886 2222221111 122 2677788888888877
Q ss_pred HhhhhhH--HHHHHHHHHHHhHHHHHHHHH
Q psy9275 154 GKRLREV--YKAAKLNNKIKSLELQGKRLR 181 (284)
Q Consensus 154 l~~~e~~--~E~~~Lk~qi~~~eKr~~RLK 181 (284)
+...... ..++.|+.+|..+......|+
T Consensus 79 ~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~ 108 (189)
T 2v71_A 79 LEHQYAQSYKQVSVLEDDLSQTRAIKEQLH 108 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7665432 334445544444444444333
No 68
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=41.24 E-value=37 Score=26.02 Aligned_cols=30 Identities=17% Similarity=0.222 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q psy9275 139 GMQKLNSKIKSLELQGKRLREVYKAAKLNNKI 170 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi 170 (284)
..+.|..||..|+.++..+. .|+..|+.-+
T Consensus 44 r~~~Le~EN~~Lr~~v~~L~--~E~~~Lr~ll 73 (87)
T 1hjb_A 44 KVLELTAENERLQKKVEQLS--RELSTLRNLF 73 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 67889999999998887665 4555555543
No 69
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=40.69 E-value=73 Score=22.13 Aligned_cols=20 Identities=15% Similarity=0.351 Sum_probs=9.9
Q ss_pred HHHHHHHHhHHHHHHHHHHH
Q psy9275 164 AKLNNKIKSLELQGKRLREV 183 (284)
Q Consensus 164 ~~Lk~qi~~~eKr~~RLKEV 183 (284)
.+|+.+|..+...+..|+++
T Consensus 39 ~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 39 GQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555544
No 70
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=40.46 E-value=84 Score=22.39 Aligned_cols=28 Identities=14% Similarity=0.074 Sum_probs=16.7
Q ss_pred HHHHH-HHH-HHHHHHHHHHHHHHHHhhhh
Q psy9275 131 RETVK-QMA-GMQKLNSKIKSLELQGKRLR 158 (284)
Q Consensus 131 P~a~~-~~~-~le~Lk~ENe~L~~~l~~~e 158 (284)
|...+ |.+ .+..|++-|..|-.++..++
T Consensus 2 ~vSVktRse~q~~kLKq~n~~L~~kv~~Le 31 (58)
T 3a2a_A 2 PLGSKTRSERQLLRLKQMNVQLAAKIQHLE 31 (58)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHH
T ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43334 444 89999999999988876554
No 71
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=39.97 E-value=67 Score=31.73 Aligned_cols=46 Identities=22% Similarity=0.288 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhceEEEee
Q psy9275 161 YKAAKLNNKIKSLELQGKRLREVYKAASQEFRETVYLLFGYKVDRT 206 (284)
Q Consensus 161 ~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFReav~~LlGYkIdf~ 206 (284)
.-+..||.-|+.+-.+|+||-.....++.-=|..|...+-|+||..
T Consensus 132 ~~IrvLq~~l~~q~skIQRLE~dI~~q~~~Cr~pC~r~~~y~VD~~ 177 (491)
T 1m1j_A 132 NRIKALQNSIQEQVVEMKRLEVDIDIKIRACKGSCARSFDYQVDKE 177 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTBSSCCCCCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHhhhcHH
Confidence 5577899999999999999999999999999999999999999987
No 72
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=39.42 E-value=22 Score=24.78 Aligned_cols=29 Identities=17% Similarity=0.176 Sum_probs=25.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy9275 74 GSDRAKLEVLEKVIEGYRQRMEHIEADQG 102 (284)
Q Consensus 74 ~~l~~ki~eLE~~l~~~R~~~~~~~~~l~ 102 (284)
+.+..|.+.|...+...|+++..+..+++
T Consensus 19 ~~L~~rN~rL~~~L~~AR~el~~Lkeele 47 (51)
T 3m91_A 19 DSLAARNSKLMETLKEARQQLLALREEVD 47 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36888999999999999999999888774
No 73
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=39.35 E-value=1.5e+02 Score=23.96 Aligned_cols=28 Identities=4% Similarity=0.031 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q psy9275 133 TVKQMAGMQKLNSKIKSLELQGKRLREV 160 (284)
Q Consensus 133 a~~~~~~le~Lk~ENe~L~~~l~~~e~~ 160 (284)
+.+++.....++++++....++......
T Consensus 39 A~~~L~~~~~m~~~i~ek~~~i~~~~~~ 66 (119)
T 2avr_X 39 ARQALAQNEQVYNELSQRAQRLQAEANT 66 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3445567788899999999998887664
No 74
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=35.90 E-value=92 Score=21.98 Aligned_cols=29 Identities=17% Similarity=0.205 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q psy9275 139 GMQKLNSKIKSLELQGKRLREVYKAAKLNNK 169 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~~E~~~Lk~q 169 (284)
.++.|..+|..|..++..++ .|+..|+.-
T Consensus 31 ~~~~L~~~N~~L~~~i~~L~--~E~~~Lk~l 59 (63)
T 1ci6_A 31 ECKELEKKNEALKERADSLA--KEIQYLKDL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 78888999999888877666 455555443
No 75
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=35.51 E-value=85 Score=25.25 Aligned_cols=20 Identities=20% Similarity=0.333 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q psy9275 139 GMQKLNSKIKSLELQGKRLR 158 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e 158 (284)
.++.|+.|+++|+..+..+.
T Consensus 16 ~Ie~Lkreie~lk~ele~l~ 35 (120)
T 3i00_A 16 LIERLYREISGLKAQLENMK 35 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 57777777777777666653
No 76
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=35.38 E-value=1.5e+02 Score=22.72 Aligned_cols=18 Identities=28% Similarity=0.289 Sum_probs=11.8
Q ss_pred HHHHHHHHHhHHHHHHHH
Q psy9275 163 AAKLNNKIKSLELQGKRL 180 (284)
Q Consensus 163 ~~~Lk~qi~~~eKr~~RL 180 (284)
....+.++++++.|++=|
T Consensus 81 ~~~aE~ev~~L~Rriqll 98 (101)
T 3u1c_A 81 AAKAESEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445566777777777654
No 77
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=35.18 E-value=1.4e+02 Score=22.20 Aligned_cols=61 Identities=13% Similarity=0.215 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccceeeeeecccCHHHHHHH-HHHHHHHHHHHHHHHHH
Q psy9275 76 DRAKLEVLEKVIEGYRQRMEHIEADQGLVCVIPGQNSEKVAQQKVQELQMEADNNRETVKQM-AGMQKLNSKIKSLELQG 154 (284)
Q Consensus 76 l~~ki~eLE~~l~~~R~~~~~~~~~l~~~~lE~~~~~g~~~~~~tkvlIL~lr~NP~a~~~~-~~le~Lk~ENe~L~~~l 154 (284)
..+.++.||..|+.+-.+++.++..+. ..++ +..+|.....+ ..++.++.+.+.+..+-
T Consensus 20 eqrEle~le~~Ie~LE~~i~~le~~la---------dp~~-----------y~~d~~~~~~l~~~l~~~e~eLe~~~erW 79 (89)
T 2lw1_A 20 LQRELEQLPQLLEDLEAKLEALQTQVA---------DASF-----------FSQPHEQTQKVLADMAAAEQELEQAFERW 79 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---------STTG-----------GGSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh---------Cccc-----------ccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777777764 1221 13355333333 36677777777766654
Q ss_pred hh
Q psy9275 155 KR 156 (284)
Q Consensus 155 ~~ 156 (284)
..
T Consensus 80 ee 81 (89)
T 2lw1_A 80 EY 81 (89)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 78
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=35.08 E-value=26 Score=21.24 Aligned_cols=18 Identities=22% Similarity=0.246 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHhhhh
Q psy9275 141 QKLNSKIKSLELQGKRLR 158 (284)
Q Consensus 141 e~Lk~ENe~L~~~l~~~e 158 (284)
.+|+..|.+|++.+..++
T Consensus 3 rrlkqknarlkqeiaale 20 (28)
T 3ra3_B 3 RRLKQKNARLKQEIAALE 20 (28)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhHHHHHHHHHH
Confidence 356666776665544443
No 79
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=34.14 E-value=97 Score=23.12 Aligned_cols=24 Identities=25% Similarity=0.497 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Q psy9275 162 KAAKLNNKIKSLELQGKRLREVYK 185 (284)
Q Consensus 162 E~~~Lk~qi~~~eKr~~RLKEVF~ 185 (284)
|-..|+.+|..+.+.+.+|+++|.
T Consensus 51 eN~~L~~~v~~L~~E~~~Lr~ll~ 74 (78)
T 1gu4_A 51 ENERLQKKVEQLSRELSTLRNLFK 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455556666666667776654
No 80
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=33.90 E-value=1.1e+02 Score=20.59 Aligned_cols=42 Identities=19% Similarity=0.239 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy9275 140 MQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRLREVY 184 (284)
Q Consensus 140 le~Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi~~~eKr~~RLKEVF 184 (284)
+.+|+.|.+.|+.. .=...|++.|+.++..++|+..-||.-.
T Consensus 2 laalkselqalkke---gfspeelaaleselqalekklaalkskl 43 (48)
T 1g6u_A 2 LAALKSELQALKKE---GFSPEELAALESELQALEKKLAALKSKL 43 (48)
T ss_dssp HHHHHHHHHHHHHT---TCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666532 1112567778888888888877776543
No 81
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=33.85 E-value=1.3e+02 Score=22.46 Aligned_cols=46 Identities=13% Similarity=0.126 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhH------------HHHHHHHHHHHhHHHHHHHHHHHH
Q psy9275 139 GMQKLNSKIKSLELQGKRLREV------------YKAAKLNNKIKSLELQGKRLREVY 184 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~------------~E~~~Lk~qi~~~eKr~~RLKEVF 184 (284)
++..+..|+..|+..+...+.. .+.++|..++..++-+..||..--
T Consensus 15 Em~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K 72 (89)
T 3bas_A 15 EMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKN 72 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 6667777777777666544432 567777777888888888886544
No 82
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=33.83 E-value=1e+02 Score=21.59 Aligned_cols=20 Identities=20% Similarity=0.296 Sum_probs=9.9
Q ss_pred HHHHHHHhHHHHHHHHHHHH
Q psy9275 165 KLNNKIKSLELQGKRLREVY 184 (284)
Q Consensus 165 ~Lk~qi~~~eKr~~RLKEVF 184 (284)
.|+.+|..+......|+.++
T Consensus 41 ~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 41 ALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555544
No 83
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=33.79 E-value=1.2e+02 Score=21.03 Aligned_cols=20 Identities=25% Similarity=0.174 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q psy9275 139 GMQKLNSKIKSLELQGKRLR 158 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e 158 (284)
..+.|..+|..|...+..+.
T Consensus 30 ~~~~L~~~n~~L~~~i~~L~ 49 (61)
T 1t2k_D 30 KAEDLSSLNGQLQSEVTLLR 49 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55566666666665554443
No 84
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=32.65 E-value=1.2e+02 Score=23.14 Aligned_cols=40 Identities=13% Similarity=0.212 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHH
Q psy9275 139 GMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRL 180 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi~~~eKr~~RL 180 (284)
+|.+.+..|-.+-.+|+..+ ....+|..++..+++++..|
T Consensus 32 ELs~vr~~ni~~eskL~eae--~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 32 EMEAIRTDNQNFASQLREAE--ARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 77788888877777776544 44555666666666665554
No 85
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=32.61 E-value=1.4e+02 Score=22.66 Aligned_cols=39 Identities=13% Similarity=0.141 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhH-----HHHHHHHHHHHhHHHHH
Q psy9275 139 GMQKLNSKIKSLELQGKRLREV-----YKAAKLNNKIKSLELQG 177 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~-----~E~~~Lk~qi~~~eKr~ 177 (284)
+++.|+.+|..|-........+ .+..+|+.+...-..|.
T Consensus 28 EieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl 71 (81)
T 2jee_A 28 EIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777776666554433 45556666555544443
No 86
>3cer_A Possible exopolyphosphatase-like protein; NESG, BLR13, Q8G5J2, X-RAY, structure, structural genomics, PSI-2; 2.40A {Bifidobacterium longum NCC2705}
Probab=32.36 E-value=13 Score=34.56 Aligned_cols=48 Identities=15% Similarity=0.268 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhhceEEEee----CCeeEEEe---eccC--CCCCceEEEecCCeeee
Q psy9275 188 SQEFRETVYLLFGYKVDRT----NCMYKLAS---MYAD--GPDENLLFQSTEGQLNL 235 (284)
Q Consensus 188 s~EFReav~~LlGYkIdf~----ng~~rL~S---~Ya~--s~ed~LvF~~~~G~mkl 235 (284)
..+|.+.|...+|++|+++ +.+|.... .+.. .+.+.+++|..+|++++
T Consensus 104 ~~~fl~~v~~~tGi~ieVIsG~eEA~l~~~gv~~~~~~~~~~~~~lviDIGGGStel 160 (343)
T 3cer_A 104 REEFEDEIERILGVRPEVIPGTEEADLSFLGATSVVNRDDLPAPYLVVDLGGGSTEL 160 (343)
T ss_dssp HHHHHHHHHHHHSSCCEECCHHHHHHHHHHHHHSSCCTTTCCSSEEEEEECSSCEEE
T ss_pred HHHHHHHHHHHHCCCEEEeCHHHHHHHHHHHHHhhCccccccCCEEEEEeCCCceEE
Confidence 3679999999999999999 33443322 2332 33568999999998777
No 87
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=32.25 E-value=1.6e+02 Score=35.53 Aligned_cols=8 Identities=25% Similarity=0.277 Sum_probs=4.0
Q ss_pred HHHHHhhh
Q psy9275 247 LLDLHLGR 254 (284)
Q Consensus 247 ~i~~wl~~ 254 (284)
++..|+..
T Consensus 2128 l~~~W~~~ 2135 (3245)
T 3vkg_A 2128 LMRKWMIR 2135 (3245)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44555543
No 88
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=32.11 E-value=1.7e+02 Score=22.39 Aligned_cols=45 Identities=18% Similarity=0.132 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhH-----HHHHHHHHHHHhHHHHHHHHHHHH
Q psy9275 140 MQKLNSKIKSLELQGKRLREV-----YKAAKLNNKIKSLELQGKRLREVY 184 (284)
Q Consensus 140 le~Lk~ENe~L~~~l~~~e~~-----~E~~~Lk~qi~~~eKr~~RLKEVF 184 (284)
+..|+.|.+....+....+.. ....+...+|.++.+|++-+-+-+
T Consensus 11 m~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~el 60 (101)
T 3u1c_A 11 MQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSR 60 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 566666666666666655543 223344445555555555444433
No 89
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=31.16 E-value=63 Score=20.26 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH
Q psy9275 162 KAAKLNNKIKSLELQGKRLREVYKA 186 (284)
Q Consensus 162 E~~~Lk~qi~~~eKr~~RLKEVF~~ 186 (284)
++..|+.-+..+.+|..||.+..+.
T Consensus 7 ~~r~l~~ivq~lq~r~drle~tvqa 31 (32)
T 2akf_A 7 DVRNLNAIVQKLQERLDRLEETVQA 31 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556777788888899998887654
No 90
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=31.04 E-value=1.6e+02 Score=21.81 Aligned_cols=36 Identities=19% Similarity=0.289 Sum_probs=17.2
Q ss_pred HHHHHHHhHHHHHHHHHH---HHHHHHHHHHHHHHHhhc
Q psy9275 165 KLNNKIKSLELQGKRLRE---VYKAASQEFRETVYLLFG 200 (284)
Q Consensus 165 ~Lk~qi~~~eKr~~RLKE---VF~~Ks~EFReav~~LlG 200 (284)
.|...++.+++.+.+|.. .-.++..+++..+|..||
T Consensus 69 ~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~~~~~ 107 (107)
T 1fxk_A 69 ELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQEAMK 107 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344444444444433332 223345666677776664
No 91
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=30.97 E-value=2.1e+02 Score=25.64 Aligned_cols=6 Identities=17% Similarity=0.667 Sum_probs=2.3
Q ss_pred HHHHHH
Q psy9275 190 EFRETV 195 (284)
Q Consensus 190 EFReav 195 (284)
++|..+
T Consensus 242 ~l~~~l 247 (273)
T 3s84_A 242 QLRQKL 247 (273)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 333333
No 92
>2etd_A LEMA protein; bromodomain-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.28A {Thermotoga maritima} SCOP: a.29.9.1
Probab=30.77 E-value=1.8e+02 Score=24.44 Aligned_cols=37 Identities=14% Similarity=0.176 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9275 161 YKAAKLNNKIKSLELQGKRLREVYKAASQEFRETVYL 197 (284)
Q Consensus 161 ~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFReav~~ 197 (284)
.-..+|+.++...|.++.-=+..|+..+..|..+|..
T Consensus 103 ~~f~~Lq~eL~~~EnrIa~ARr~YN~aV~~yN~~i~~ 139 (171)
T 2etd_A 103 ANFRQLMDELAGTENRIAVARRDYNEAVXXYNTAIXX 139 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 4577899999999999999999999999999887765
No 93
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=30.63 E-value=3.3e+02 Score=25.25 Aligned_cols=21 Identities=29% Similarity=0.396 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHH
Q psy9275 161 YKAAKLNNKIKSLELQGKRLR 181 (284)
Q Consensus 161 ~E~~~Lk~qi~~~eKr~~RLK 181 (284)
.|+..+..+|+.++....|+|
T Consensus 450 ~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 450 GEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 456666666666666666654
No 94
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=30.43 E-value=1.8e+02 Score=22.10 Aligned_cols=52 Identities=13% Similarity=0.090 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhH-----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy9275 139 GMQKLNSKIKSLELQGKRLREV-----YKAAKLNNKIKSLELQGKRLREVYKAASQE 190 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~-----~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~E 190 (284)
.+..|+.|.+....+....+.. .....+..+|.++.++++-+..-+-.....
T Consensus 10 Km~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~ 66 (101)
T 3u59_A 10 KMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSES 66 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666777777766666665544 223334445555555555554444433333
No 95
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=29.81 E-value=27 Score=24.27 Aligned_cols=32 Identities=13% Similarity=0.094 Sum_probs=22.4
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy9275 71 APPGSDRAKLEVLEKVIEGYRQRMEHIEADQG 102 (284)
Q Consensus 71 ~~~~~l~~ki~eLE~~l~~~R~~~~~~~~~l~ 102 (284)
.++++|...+++|...++.+..+++++.+.|+
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556777777777777777777777776663
No 96
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=29.51 E-value=1.9e+02 Score=22.09 Aligned_cols=28 Identities=18% Similarity=0.347 Sum_probs=22.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy9275 74 GSDRAKLEVLEKVIEGYRQRMEHIEADQ 101 (284)
Q Consensus 74 ~~l~~ki~eLE~~l~~~R~~~~~~~~~l 101 (284)
+.-...|.+.|+.|++..+.+..++-+.
T Consensus 34 eerk~~i~~ie~~l~EA~ell~qMelE~ 61 (102)
T 1vcs_A 34 DEKKQMVANVEKQLEEARELLEQMDLEV 61 (102)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566779999999999999999977665
No 97
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=29.43 E-value=52 Score=23.03 Aligned_cols=16 Identities=25% Similarity=0.254 Sum_probs=6.1
Q ss_pred HHHHHHhHHHHHHHHH
Q psy9275 166 LNNKIKSLELQGKRLR 181 (284)
Q Consensus 166 Lk~qi~~~eKr~~RLK 181 (284)
|+.+|..+...+..|+
T Consensus 41 L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 41 LASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 98
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=28.62 E-value=1.5e+02 Score=20.70 Aligned_cols=19 Identities=16% Similarity=0.216 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q psy9275 139 GMQKLNSKIKSLELQGKRL 157 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~ 157 (284)
..+.|..+|..|...+..+
T Consensus 31 ~v~~L~~~n~~L~~ei~~L 49 (63)
T 2wt7_A 31 ETDQLEDEKSALQTEIANL 49 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555566666665554433
No 99
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=28.10 E-value=2e+02 Score=21.96 Aligned_cols=28 Identities=4% Similarity=0.152 Sum_probs=23.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy9275 74 GSDRAKLEVLEKVIEGYRQRMEHIEADQ 101 (284)
Q Consensus 74 ~~l~~ki~eLE~~l~~~R~~~~~~~~~l 101 (284)
+.-...|.+.|+.+++..+.+..++-+.
T Consensus 45 e~rk~~i~~ie~~ldEA~eLl~qMelE~ 72 (102)
T 2qyw_A 45 EEKKKLVRDFDEKQQEANETLAEMEEEL 72 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566779999999999999999977665
No 100
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=27.80 E-value=1.3e+02 Score=30.19 Aligned_cols=40 Identities=13% Similarity=0.165 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhH----------------------HHHHHHHHHHHhHHHH
Q psy9275 137 MAGMQKLNSKIKSLELQGKRLREV----------------------YKAAKLNNKIKSLELQ 176 (284)
Q Consensus 137 ~~~le~Lk~ENe~L~~~l~~~e~~----------------------~E~~~Lk~qi~~~eKr 176 (284)
++.|.+||.-+++++.+++++|-+ .....+|+|++++...
T Consensus 130 lsnIrvLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~QKQLeQv~a~ 191 (562)
T 3ghg_A 130 VQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQKQLEQVIAK 191 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchheeecchHHHHHHHHHHHHHhhc
Confidence 346777888888888888887775 4577888888877654
No 101
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=27.31 E-value=57 Score=29.65 Aligned_cols=54 Identities=22% Similarity=0.266 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHhhh---hhH----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy9275 139 GMQKLNSKIKSLELQGKRL---REV----YKAAKLNNKIKSLELQGKRLREVYKAASQEFR 192 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~---e~~----~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFR 192 (284)
+++.|+.|...|+.++... ... ..+.+++.++..+..++.+|++..+..-.+++
T Consensus 25 ~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~ 85 (251)
T 3m9b_A 25 ELEQLRREAAVLREQLENAVGSHAPTRSARDIHQLEARIDSLAARNSKLMETLKEARQQLL 85 (251)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhcccCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666555555322 100 23556666666666666666666555444443
No 102
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=26.69 E-value=1.2e+02 Score=20.44 Aligned_cols=33 Identities=18% Similarity=0.238 Sum_probs=20.6
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHH
Q psy9275 149 SLELQGKRLREVYKAAKLNNKIKSLELQGKRLREV 183 (284)
Q Consensus 149 ~L~~~l~~~e~~~E~~~Lk~qi~~~eKr~~RLKEV 183 (284)
+|++++.+.. .|++..+++|..+.+|..-|.++
T Consensus 6 ~l~qkI~kVd--rEI~Kte~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 6 ELIQNMDRVD--REITMVEQQISKLKKKQQQLEEE 38 (42)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555444 66777777777777766666554
No 103
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=26.34 E-value=18 Score=27.24 Aligned_cols=10 Identities=10% Similarity=0.092 Sum_probs=0.5
Q ss_pred HHHHHhhccc
Q psy9275 55 MEWRALKGNA 64 (284)
Q Consensus 55 ~e~~~lk~~~ 64 (284)
.|+..||++.
T Consensus 3 ~eie~L~~q~ 12 (86)
T 1x8y_A 3 CQLSQLQCQL 12 (86)
T ss_dssp ---------C
T ss_pred HhHHHHHHHH
Confidence 4555566654
No 104
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=26.32 E-value=3.4e+02 Score=24.03 Aligned_cols=65 Identities=18% Similarity=0.180 Sum_probs=46.3
Q ss_pred eeecccCH---HHHH-HHH-HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy9275 124 QMEADNNR---ETVK-QMA-GMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRLREVYKAASQE 190 (284)
Q Consensus 124 IL~lr~NP---~a~~-~~~-~le~Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~E 190 (284)
+|+|.-.| ...+ -+. .+..+++++..|..+|.... .|.+.+.+++++......-++|-|.+-+.|
T Consensus 152 hLSL~f~~asde~Ik~yLa~R~~~lK~kl~~l~~~L~~~~--~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (228)
T 3q0x_A 152 HITLAFRPGNDSVVKQFLAFRLSEVKGTCHDLSDDLSRTR--DDRDSMVAQLAQCRQQLAQLREQYDKHLLE 221 (228)
T ss_dssp EEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhhhee
Confidence 34444433 4444 444 78999999999988887766 577788888888888888888877776544
No 105
>2e4m_C HA-17; botulinum toxin, hemagglutinin subcomponent complex; 1.85A {Clostridium botulinum}
Probab=26.13 E-value=55 Score=27.06 Aligned_cols=30 Identities=27% Similarity=0.545 Sum_probs=23.7
Q ss_pred ee-CCeeEEEeeccCCCCCceEEEecCCeeeeeCC
Q psy9275 205 RT-NCMYKLASMYADGPDENLLFQSTEGQLNLIET 238 (284)
Q Consensus 205 f~-ng~~rL~S~Ya~s~ed~LvF~~~~G~mkll~s 238 (284)
|. +|.|++.|+|. +++-..+.+|.+.++.+
T Consensus 7 flp~GnY~IkSifs----~SlyL~~~sg~ltf~~~ 37 (146)
T 2e4m_C 7 FLPNGNYKIKSLFS----DSLYLTYSSGSLSFLNT 37 (146)
T ss_dssp CCCSEEEEEEESSC----SSEEEEECSSCEEEEEC
T ss_pred ecCCCcEEEEEEec----CcEEecccCCeEEEecc
Confidence 45 99999999998 45777777888777663
No 106
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=26.12 E-value=27 Score=24.13 Aligned_cols=21 Identities=19% Similarity=0.248 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q psy9275 80 LEVLEKVIEGYRQRMEHIEAD 100 (284)
Q Consensus 80 i~eLE~~l~~~R~~~~~~~~~ 100 (284)
|+.||..++.+.+.+..+...
T Consensus 46 ~~~L~~ri~~Le~~l~~l~~~ 66 (70)
T 1zme_C 46 LQQLQKDLNDKTEENNRLKAL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444333
No 107
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=26.11 E-value=61 Score=22.08 Aligned_cols=28 Identities=18% Similarity=0.281 Sum_probs=23.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy9275 75 SDRAKLEVLEKVIEGYRQRMEHIEADQG 102 (284)
Q Consensus 75 ~l~~ki~eLE~~l~~~R~~~~~~~~~l~ 102 (284)
.+..||+.||..++-++++.+.+-++.+
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~ 29 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYN 29 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999888766653
No 108
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=25.84 E-value=1.1e+02 Score=24.23 Aligned_cols=26 Identities=15% Similarity=0.226 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy9275 77 RAKLEVLEKVIEGYRQRMEHIEADQG 102 (284)
Q Consensus 77 ~~ki~eLE~~l~~~R~~~~~~~~~l~ 102 (284)
-.+|++|+..++.+|.++..+..+.+
T Consensus 64 ~~~v~eLe~everL~~ENq~L~~e~~ 89 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQLLTENE 89 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999998887765
No 109
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=25.18 E-value=97 Score=21.39 Aligned_cols=19 Identities=26% Similarity=0.183 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q psy9275 139 GMQKLNSKIKSLELQGKRL 157 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~ 157 (284)
.+..|..||..|+.++..+
T Consensus 30 ~v~~L~~eN~~L~~~~~~L 48 (55)
T 1dh3_A 30 RVAVLENQNKTLIEELKAL 48 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5556666666666555443
No 110
>2qfa_C Inner centromere protein; three-helical-bundle, long helix, protein complex, alternative splicing, apoptosis, cell cycle, cell division; HET: MES; 1.40A {Homo sapiens}
Probab=24.81 E-value=59 Score=22.36 Aligned_cols=18 Identities=22% Similarity=0.178 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy9275 178 KRLREVYKAASQEFRETV 195 (284)
Q Consensus 178 ~RLKEVF~~Ks~EFReav 195 (284)
.||.|||..|.+||..-|
T Consensus 9 ~~Lle~c~~Kl~eF~~~v 26 (47)
T 2qfa_C 9 IHLLELCDQKLMEFLCNM 26 (47)
T ss_dssp THHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhc
Confidence 479999999999997554
No 111
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=24.63 E-value=1.3e+02 Score=22.49 Aligned_cols=16 Identities=19% Similarity=0.389 Sum_probs=6.7
Q ss_pred HHHHHHHHHhHHHHHH
Q psy9275 163 AAKLNNKIKSLELQGK 178 (284)
Q Consensus 163 ~~~Lk~qi~~~eKr~~ 178 (284)
...|..+|=+++..+.
T Consensus 48 ~ErLNDEiislNIENN 63 (75)
T 3a7o_A 48 TERLNDELISGTIENN 63 (75)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHhHHHHH
Confidence 3344444444444433
No 112
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=24.59 E-value=2.6e+02 Score=22.08 Aligned_cols=31 Identities=13% Similarity=0.084 Sum_probs=25.3
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy9275 71 APPGSDRAKLEVLEKVIEGYRQRMEHIEADQ 101 (284)
Q Consensus 71 ~~~~~l~~ki~eLE~~l~~~R~~~~~~~~~l 101 (284)
.++..+++.|+.|+..|++.+.....++..+
T Consensus 38 ~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l 68 (131)
T 3tnu_A 38 SEISELRRTMQNLEIELQSQLSMKASLENSL 68 (131)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 6777899999999999999999988888776
No 113
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=24.22 E-value=1.7e+02 Score=21.09 Aligned_cols=31 Identities=23% Similarity=0.308 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy9275 162 KAAKLNNKIKSLELQGKRLREVYKAASQEFR 192 (284)
Q Consensus 162 E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFR 192 (284)
|.-+++.-+...|.|++-|..|-+.-+.|.|
T Consensus 14 eylevK~ALaaSeAkiQQLmkVN~~ls~Elr 44 (63)
T 2w6a_A 14 EYLELKKALATSEAKVQQLMKVNSSLSDELR 44 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHhHhhhHHHH
Confidence 3444444455555555555555555554444
No 114
>1rja_A Tyrosine-protein kinase 6; human protein tyrosine kinase-6 (PTK6/BRK), SRC homology 2(S domain, solution structure, backbone dynamics, transferase; NMR {Homo sapiens} SCOP: d.93.1.1
Probab=24.15 E-value=1e+02 Score=22.76 Aligned_cols=34 Identities=26% Similarity=0.251 Sum_probs=24.1
Q ss_pred cCCeeeeeCCcchhhhHHHHHHHhhhCCCchhhh
Q psy9275 229 TEGQLNLIETDYSKVLKPLLDLHLGRHHSIPMLL 262 (284)
Q Consensus 229 ~~G~mkll~s~f~~~l~~~i~~wl~~~~SIPaFL 262 (284)
.+|..-+-+...-.++.++|++|......+||-|
T Consensus 59 ~~g~~~l~~~~~F~sl~~LV~~y~~~~~~l~~~L 92 (100)
T 1rja_A 59 AGGRLHLNEAVSFLSLPELVNYHRAQSLSHGLRL 92 (100)
T ss_dssp SSSCEEEETTEEESSHHHHHHHHHHCCTTSSSCC
T ss_pred CCCcEEECCCCccCCHHHHHHHHhhCCCCCCCCC
Confidence 3566555543344689999999998888777654
No 115
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=23.86 E-value=67 Score=19.82 Aligned_cols=18 Identities=17% Similarity=0.185 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHhh
Q psy9275 139 GMQKLNSKIKSLELQGKR 156 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~ 156 (284)
-+..|.+||+.|++++..
T Consensus 7 llasleaenkqlkakvee 24 (31)
T 1p9i_A 7 LLASLEAENKQLKAKVEE 24 (31)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 366778888888777654
No 116
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=23.80 E-value=67 Score=24.67 Aligned_cols=57 Identities=9% Similarity=0.152 Sum_probs=41.0
Q ss_pred CHHHHHHHH-HHHHHHHHHHHHHHHHhhhhhH--HHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy9275 130 NRETVKQMA-GMQKLNSKIKSLELQGKRLREV--YKAAKLNNKIKSLELQGKRLREVYKA 186 (284)
Q Consensus 130 NP~a~~~~~-~le~Lk~ENe~L~~~l~~~e~~--~E~~~Lk~qi~~~eKr~~RLKEVF~~ 186 (284)
||.+.+.++ .++.|++-.++|.+-+...+.. .|+..-+.-+..+++++..|+.-|+.
T Consensus 34 ~~~~~~El~~~l~el~e~l~DL~~SI~i~e~~~~~EI~~Rk~~v~~l~~~i~~lk~~~~~ 93 (95)
T 2c5k_T 34 DDDQEEEIQDILKDVEETIVDLDRSIIVMKRDENEDVSGREAQVKNIKQQLDALKLRFDR 93 (95)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344445444 7888888888888777775543 66777778888888888888887764
No 117
>1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A*
Probab=23.78 E-value=23 Score=32.33 Aligned_cols=47 Identities=19% Similarity=0.197 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhhceEEEee----CCeeEEEe---eccCCCCCceEEEecCCeeee
Q psy9275 188 SQEFRETVYLLFGYKVDRT----NCMYKLAS---MYADGPDENLLFQSTEGQLNL 235 (284)
Q Consensus 188 s~EFReav~~LlGYkIdf~----ng~~rL~S---~Ya~s~ed~LvF~~~~G~mkl 235 (284)
..+|.+.|...+|++|+.+ +..|.... .+. ...+.+++|..+|++++
T Consensus 99 ~~~fl~~v~~~~G~~i~vIsg~eEA~l~~~gv~~~l~-~~~~~lvvDIGGGStEl 152 (315)
T 1t6c_A 99 AEEFLERVKREVGLVVEVITPEQEGRYAYLAVAYSLK-PEGEVCVVDQGGGSTEY 152 (315)
T ss_dssp HHHHHHHHHHHTCCCEEECCHHHHHHHHHHHHHHHTC-CCSEEEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHCCCEEEcCHHHHHHHHHHHHHhhcc-cCCCEEEEEeCCCcEEE
Confidence 3689999999999999999 33443322 122 24468999999998776
No 118
>1blj_A P55 BLK protein tyrosine kinase; signal transduction, transferase, phosphotransferase, phosphorylation; NMR {Mus musculus} SCOP: d.93.1.1 PDB: 1blk_A
Probab=23.60 E-value=1.5e+02 Score=22.25 Aligned_cols=34 Identities=12% Similarity=0.044 Sum_probs=25.0
Q ss_pred cCCeeeeeCCcchhhhHHHHHHHhhhCCCchhhh
Q psy9275 229 TEGQLNLIETDYSKVLKPLLDLHLGRHHSIPMLL 262 (284)
Q Consensus 229 ~~G~mkll~s~f~~~l~~~i~~wl~~~~SIPaFL 262 (284)
.+|..-+.+...-.++.++|++|......+||-|
T Consensus 73 ~~g~~~l~~~~~F~sl~~LV~~y~~~~~~l~~~L 106 (114)
T 1blj_A 73 DNGGYYISPRITFPTLQALVQHYSKKGDGLCQKL 106 (114)
T ss_dssp TTTEEEEETTEEESSHHHHHHHHHHCCSSSSSCC
T ss_pred CCCCEEECCCcccCCHHHHHHHhhhCCCCCceec
Confidence 3666666554445689999999999888887755
No 119
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=23.49 E-value=2.5e+02 Score=22.39 Aligned_cols=14 Identities=14% Similarity=0.266 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHH
Q psy9275 139 GMQKLNSKIKSLEL 152 (284)
Q Consensus 139 ~le~Lk~ENe~L~~ 152 (284)
+++.|++|...+.+
T Consensus 46 ~idelk~ei~q~~~ 59 (110)
T 2v4h_A 46 LIDKLKEEAEQHKI 59 (110)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 56666666666555
No 120
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=23.35 E-value=1.1e+02 Score=21.80 Aligned_cols=32 Identities=19% Similarity=0.261 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q psy9275 140 MQKLNSKIKSLELQGKRLREVYKAAKLNNKIK 171 (284)
Q Consensus 140 le~Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi~ 171 (284)
++.|+.--+.|..++..+..+.|+...+.++.
T Consensus 27 ieelkkkweelkkkieelggggevkkveeevk 58 (67)
T 1lq7_A 27 IEELKKKWEELKKKIEELGGGGEVKKVEEEVK 58 (67)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSSTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCcchhHHHHHHH
Confidence 33444444444444444444433333333333
No 121
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=23.28 E-value=2.8e+02 Score=22.00 Aligned_cols=21 Identities=10% Similarity=0.135 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhh
Q psy9275 139 GMQKLNSKIKSLELQGKRLRE 159 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~ 159 (284)
+++.|+.+|+.|...++.++-
T Consensus 43 El~~lr~~~~~l~~~iReLEq 63 (111)
T 2v66_B 43 DLSQTRAIKEQLHKYVRELEQ 63 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555543
No 122
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=23.18 E-value=2.7e+02 Score=21.71 Aligned_cols=85 Identities=15% Similarity=0.191 Sum_probs=49.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccceeeeeecccCHHHHHHHH-HHHHHHHHHHHHHHH
Q psy9275 75 SDRAKLEVLEKVIEGYRQRMEHIEADQGLVCVIPGQNSEKVAQQKVQELQMEADNNRETVKQMA-GMQKLNSKIKSLELQ 153 (284)
Q Consensus 75 ~l~~ki~eLE~~l~~~R~~~~~~~~~l~~~~lE~~~~~g~~~~~~tkvlIL~lr~NP~a~~~~~-~le~Lk~ENe~L~~~ 153 (284)
.++.++..|+..+.....++..+..++.. . -..+...+ ....+..|.++|-+.
T Consensus 9 ~lre~l~~le~~~~~~~~e~~~L~~~l~e--------------E------------~~~R~~aE~~~~~ie~ElEeLTas 62 (97)
T 2eqb_B 9 QLKEDYNTLKRELSDRDDEVKRLREDIAK--------------E------------NELRTKAEEEADKLNKEVEDLTAS 62 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------H------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHH--------------H------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777766666666665555520 0 00111222 566777788877665
Q ss_pred HhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy9275 154 GKRLREVYKAAKLNNKIKSLELQGKRLREVYKA 186 (284)
Q Consensus 154 l~~~e~~~E~~~Lk~qi~~~eKr~~RLKEVF~~ 186 (284)
|=.-. ..=++.-+.+-...++|+..|++--..
T Consensus 63 LFeEA-N~MVa~ar~e~~~~e~kn~~L~~qL~d 94 (97)
T 2eqb_B 63 LFDEA-NNMVADARKEKYAIEILNKRLTEQLRE 94 (97)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 53111 122555677778888888888876544
No 123
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=22.96 E-value=1.9e+02 Score=21.01 Aligned_cols=40 Identities=18% Similarity=0.283 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHH
Q psy9275 139 GMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRL 180 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi~~~eKr~~RL 180 (284)
-+..|......|......+. .|...|+.+|..+...+..|
T Consensus 30 ~i~~LE~~v~~le~~~~~l~--~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 30 HLKALETQVVTLKELHSSTT--LENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHc
Confidence 45555555555444333222 45556666666666665544
No 124
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=22.33 E-value=3.1e+02 Score=25.93 Aligned_cols=58 Identities=14% Similarity=0.176 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9275 139 GMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRLREVYKAASQEFRETVYL 197 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFReav~~ 197 (284)
+++.|+++-..+-.++.. ..+.+..+|.+++..+..++..|.+-..+.-.++.+....
T Consensus 43 ~~~~l~~~~n~~sk~i~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (421)
T 1ses_A 43 RLQEVQTERNQVAKRVPK-APPEEKEALIARGKALGEEAKRLEEALREKEARLEALLLQ 100 (421)
T ss_dssp HHHHHHHHHHHHHHHSSS-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHh-hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 788888888888877775 3334556666777777666666666666666666555444
No 125
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=21.99 E-value=2.3e+02 Score=26.37 Aligned_cols=45 Identities=18% Similarity=0.171 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy9275 140 MQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRLREVYKA 186 (284)
Q Consensus 140 le~Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi~~~eKr~~RLKEVF~~ 186 (284)
...|..|..+|...+...+ .++..|+.++.+.+.+++.|++....
T Consensus 7 ~~~~~~~~~~~e~~i~~~~--~~i~~L~~~l~~~~~~i~~l~~~i~~ 51 (323)
T 1lwu_C 7 VQKILEEVRILEQIGVSHD--AQIQELSEMWRVNQQFVTRLQQQLVD 51 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666555554433 56778888888888888888765444
No 126
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=21.98 E-value=2.1e+02 Score=20.13 Aligned_cols=68 Identities=15% Similarity=0.101 Sum_probs=37.0
Q ss_pred cccCHHH-HH---HHH-HHHHHHHHHHHHHHHHhhhhhH----------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy9275 127 ADNNRET-VK---QMA-GMQKLNSKIKSLELQGKRLREV----------YKAAKLNNKIKSLELQGKRLREVYKAASQEF 191 (284)
Q Consensus 127 lr~NP~a-~~---~~~-~le~Lk~ENe~L~~~l~~~e~~----------~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EF 191 (284)
++-+|+. +. +.. .-..++....+|...+..+... ....++...+......+..+.+.....+..|
T Consensus 7 i~v~~e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~~A~~~ 86 (93)
T 4ioe_A 7 IKITPEELERIAGNFKNAAGEAQSQINRLEGDINSLEGQWAGATQAKFRGEFIQSKQAMQQYIPILEGISTDLKRIADKF 86 (93)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4679933 22 333 5667777777777777777543 2233444444444444444444444555555
Q ss_pred HHH
Q psy9275 192 RET 194 (284)
Q Consensus 192 Rea 194 (284)
+++
T Consensus 87 ~~~ 89 (93)
T 4ioe_A 87 RNT 89 (93)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
No 127
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=21.92 E-value=2.7e+02 Score=21.20 Aligned_cols=41 Identities=10% Similarity=0.191 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHH
Q psy9275 139 GMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRLR 181 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi~~~eKr~~RLK 181 (284)
.+..|+.|=.+|.+.|..++ .+-..+..+|..++....+|.
T Consensus 12 eL~~l~~eE~~L~~eL~~lE--ke~~~l~~el~~le~E~~~L~ 52 (96)
T 3q8t_A 12 ELKELALEEERLIQELEDVE--KNRKVVAENLEKVQAEAERLD 52 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHh
Confidence 78888888888888888887 444444444444444444443
No 128
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=21.00 E-value=1.4e+02 Score=20.61 Aligned_cols=12 Identities=42% Similarity=0.576 Sum_probs=5.1
Q ss_pred HHHHHHHHHhHH
Q psy9275 163 AAKLNNKIKSLE 174 (284)
Q Consensus 163 ~~~Lk~qi~~~e 174 (284)
++.|++.|+.++
T Consensus 40 ianlekdianle 51 (56)
T 3he4_A 40 IANLEKDIANLE 51 (56)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 129
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=20.85 E-value=1.4e+02 Score=21.23 Aligned_cols=40 Identities=25% Similarity=0.269 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHH
Q psy9275 140 MQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKR 179 (284)
Q Consensus 140 le~Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi~~~eKr~~R 179 (284)
+.+|.+-..+|.+++.++..+..+.+|+++-+.+.|++.-
T Consensus 4 vkaleekvkaleekvkalggggrieelkkkweelkkkiee 43 (67)
T 1lq7_A 4 VKALEEKVKALEEKVKALGGGGRIEELKKKWEELKKKIEE 43 (67)
T ss_dssp HHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHH
Confidence 3456666667777777776665666666666666666554
No 130
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=20.76 E-value=2.7e+02 Score=21.20 Aligned_cols=28 Identities=14% Similarity=0.191 Sum_probs=22.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy9275 74 GSDRAKLEVLEKVIEGYRQRMEHIEADQ 101 (284)
Q Consensus 74 ~~l~~ki~eLE~~l~~~R~~~~~~~~~l 101 (284)
..+..+|++|+..++.+..++..+.+.+
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~a~L 31 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDALAKL 31 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678888889888888888888776666
No 131
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=20.44 E-value=1e+02 Score=28.03 Aligned_cols=36 Identities=14% Similarity=0.164 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHH
Q psy9275 139 GMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRLREV 183 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi~~~eKr~~RLKEV 183 (284)
+++.|.+.|+.|.+ ++.+++.+|..+...+.||++.
T Consensus 62 ql~~L~arNe~L~~---------~Lk~ar~El~~LkeElerL~sP 97 (251)
T 3m9b_A 62 RIDSLAARNSKLME---------TLKEARQQLLALREEVDRLGQP 97 (251)
T ss_dssp HHHHHTTTHHHHHH---------HHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHhcCC
Confidence 44445454544443 4456777777777777777764
No 132
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=20.31 E-value=2.7e+02 Score=20.57 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=11.3
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHh
Q psy9275 132 ETVKQMA-GMQKLNSKIKSLELQGK 155 (284)
Q Consensus 132 ~a~~~~~-~le~Lk~ENe~L~~~l~ 155 (284)
++...+. .++.+..+.+.|..++.
T Consensus 65 e~~~~L~~~~e~i~~~i~~le~~~~ 89 (107)
T 1fxk_A 65 ELTEELQEKLETLQLREKTIERQEE 89 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444333 45555555555544443
Done!