Query psy9275
Match_columns 284
No_of_seqs 146 out of 187
Neff 4.8
Searched_HMMs 13730
Date Fri Aug 16 23:19:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9275.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/9275hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qvra2 c.37.1.20 (A:149-535) 51.2 47 0.0034 29.1 10.4 44 139-182 314-361 (387)
2 d2oq1a2 d.93.1.1 (A:135-258) T 40.9 10 0.00076 28.2 3.5 56 207-262 63-118 (124)
3 d1gqea_ e.38.1.1 (A:) Polypept 38.9 68 0.005 27.9 9.3 31 224-256 127-157 (362)
4 d1ivsa1 a.2.7.3 (A:797-862) Va 37.5 49 0.0036 21.5 7.8 19 139-157 47-65 (66)
5 d1a81a1 d.93.1.1 (A:9-137) Syk 36.1 14 0.00099 27.8 3.5 55 208-262 41-95 (129)
6 d1fxkc_ a.2.5.1 (C:) Prefoldin 35.7 72 0.0053 23.0 12.0 41 132-181 88-129 (133)
7 d2etda1 a.29.9.1 (A:35-183) Hy 31.3 96 0.007 23.1 8.7 37 161-197 91-127 (149)
8 d1vcsa1 a.47.2.1 (A:8-96) Vesi 30.8 80 0.0059 22.0 8.9 27 75-101 28-54 (89)
9 d1fxkc_ a.2.5.1 (C:) Prefoldin 30.5 89 0.0065 22.4 12.0 8 124-131 73-80 (133)
10 d1i3za_ d.93.1.1 (A:) Ews/fli1 30.2 21 0.0015 25.2 3.5 55 208-262 38-97 (103)
11 d2asba3 d.52.3.1 (A:263-329) T 27.2 15 0.0011 25.1 2.1 14 195-208 51-65 (67)
12 d1a81a2 d.93.1.1 (A:138-262) S 27.1 23 0.0017 26.1 3.4 33 230-262 86-118 (125)
13 d1k9aa2 d.93.1.1 (A:77-177) Ca 25.0 33 0.0024 24.1 3.9 33 230-262 59-91 (101)
14 d1ez3a_ a.47.2.1 (A:) Syntaxin 22.5 1.2E+02 0.009 21.4 13.1 31 166-196 91-121 (124)
15 d1ivsa1 a.2.7.3 (A:797-862) Va 20.5 1E+02 0.0076 19.8 7.1 48 136-183 8-61 (66)
No 1
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=51.17 E-value=47 Score=29.09 Aligned_cols=44 Identities=16% Similarity=0.234 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhH---HHHHHHHH-HHHhHHHHHHHHHH
Q psy9275 139 GMQKLNSKIKSLELQGKRLREV---YKAAKLNN-KIKSLELQGKRLRE 182 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~e~~---~E~~~Lk~-qi~~~eKr~~RLKE 182 (284)
.+..|+++.+.++..+...... ...++++. .+...++....+.+
T Consensus 314 ~i~~Lk~~Le~lr~~le~A~r~gd~e~AaeL~y~~ip~le~el~~l~~ 361 (387)
T d1qvra2 314 KLREAQHRLDEVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSE 361 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhchHHHHHHHHHHHHH
Confidence 4555666666666555433322 22344442 45555655555543
No 2
>d2oq1a2 d.93.1.1 (A:135-258) Tyrosine-protein kinase zap-70 {Human (Homo sapiens) [TaxId: 9606]}
Probab=40.92 E-value=10 Score=28.19 Aligned_cols=56 Identities=18% Similarity=0.184 Sum_probs=32.1
Q ss_pred CCeeEEEeeccCCCCCceEEEecCCeeeeeCCcchhhhHHHHHHHhhhCCCchhhh
Q psy9275 207 NCMYKLASMYADGPDENLLFQSTEGQLNLIETDYSKVLKPLLDLHLGRHHSIPMLL 262 (284)
Q Consensus 207 ng~~rL~S~Ya~s~ed~LvF~~~~G~mkll~s~f~~~l~~~i~~wl~~~~SIPaFL 262 (284)
.|.|-|+=+|......+.|..-.+|..-+.+...-.++.++|++|-.....+||-|
T Consensus 63 ~g~yvLSv~~~~~v~H~~I~~~~~g~~~l~~~~~F~sl~~LV~~y~~~~~gL~~~L 118 (124)
T d2oq1a2 63 QGTYALSLIYGKTVYHYLISQDKAGKYCIPEGTKFDTLWQLVEYLKLKADGLIYCL 118 (124)
T ss_dssp TTEEEEEEEETTEEEEEEEEECTTSCEESTTSCCBSSHHHHHHHHHHCCTTSSSCC
T ss_pred CCCEEEEeecCCceEEEEEEECCCCCEEeCCCcccCCHHHHHHHHhhCCCCCcccC
Confidence 34565544443222223333323455444332234789999999998888899865
No 3
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}
Probab=38.87 E-value=68 Score=27.95 Aligned_cols=31 Identities=16% Similarity=0.160 Sum_probs=21.4
Q ss_pred eEEEecCCeeeeeCCcchhhhHHHHHHHhhhCC
Q psy9275 224 LLFQSTEGQLNLIETDYSKVLKPLLDLHLGRHH 256 (284)
Q Consensus 224 LvF~~~~G~mkll~s~f~~~l~~~i~~wl~~~~ 256 (284)
+.+....|+.+.- +|+..+-+++..|...++
T Consensus 127 lEIrAGaGG~EA~--dfA~~L~RMY~r~ae~~g 157 (362)
T d1gqea_ 127 LDIQAGSGGTEAQ--DWASMLERMYLRWAESRG 157 (362)
T ss_dssp EEEEECSSHHHHH--HHHHHHHHHHHHHHHHTT
T ss_pred EEEEecCchhhHH--HHHHHHHHHHHHHHHHcC
Confidence 4455555655443 588899999999987654
No 4
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=37.46 E-value=49 Score=21.55 Aligned_cols=19 Identities=0% Similarity=0.013 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q psy9275 139 GMQKLNSKIKSLELQGKRL 157 (284)
Q Consensus 139 ~le~Lk~ENe~L~~~l~~~ 157 (284)
.++.++.+.+.+...|..+
T Consensus 47 kl~~~~~~~~~l~~~l~~L 65 (66)
T d1ivsa1 47 RLKENLEQAERIREALSQI 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 6777777777777666543
No 5
>d1a81a1 d.93.1.1 (A:9-137) Syk tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.11 E-value=14 Score=27.84 Aligned_cols=55 Identities=11% Similarity=0.076 Sum_probs=34.8
Q ss_pred CeeEEEeeccCCCCCceEEEecCCeeeeeCCcchhhhHHHHHHHhhhCCCchhhh
Q psy9275 208 CMYKLASMYADGPDENLLFQSTEGQLNLIETDYSKVLKPLLDLHLGRHHSIPMLL 262 (284)
Q Consensus 208 g~~rL~S~Ya~s~ed~LvF~~~~G~mkll~s~f~~~l~~~i~~wl~~~~SIPaFL 262 (284)
|.|-|+=.|...-..+.|....+|...+.+...-.++.++|++|-.....+||-|
T Consensus 41 g~y~LSv~~~~~v~H~~I~~~~~g~~~i~~~~~F~sl~eLV~~Y~~~~~gl~~~L 95 (129)
T d1a81a1 41 GGFALSVAHGRKAHHYTIERELNGTYAIAGGRTHASPADLCHYHSQESDGLVCLL 95 (129)
T ss_dssp TCEEEEEEETTEEEEEEEEECTTSCEEETTSCCBSSHHHHHHHHTTCCTTSSSCC
T ss_pred cceEEEeeecccceEEEEEEcCCCCeeecCCcccCCHHHHHHHHhhCCCCCcccC
Confidence 4566655554332334444444566666443333689999999998888888855
No 6
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=35.66 E-value=72 Score=22.95 Aligned_cols=41 Identities=12% Similarity=0.248 Sum_probs=21.1
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHH
Q psy9275 132 ETVKQMA-GMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRLR 181 (284)
Q Consensus 132 ~a~~~~~-~le~Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi~~~eKr~~RLK 181 (284)
+|..-.. .++.|+...+.|... +..++.++......++++.
T Consensus 88 eA~~~l~~ri~~l~~~~~~l~~~---------~~~~~~~i~~l~~~~~~l~ 129 (133)
T d1fxkc_ 88 DAMESIKSQKNELESTLQKMGEN---------LRAITDIMMKLSPQAEELL 129 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHH
Confidence 4444222 455555555555433 4455566666666555554
No 7
>d2etda1 a.29.9.1 (A:35-183) Hypothetical protein TM0961 {Thermotoga maritima [TaxId: 2336]}
Probab=31.35 E-value=96 Score=23.07 Aligned_cols=37 Identities=14% Similarity=0.161 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9275 161 YKAAKLNNKIKSLELQGKRLREVYKAASQEFRETVYL 197 (284)
Q Consensus 161 ~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFReav~~ 197 (284)
.-...|+.++...|.++..-++.|+..+.+|-..|..
T Consensus 91 ~~~~~l~~~l~~~E~~Ia~aR~~YN~~V~~yN~~i~~ 127 (149)
T d2etda1 91 ANFRQLMDELAGTENRIAVARRDYNEAVKKYNTAIKK 127 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5688999999999999999999999999999988754
No 8
>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=30.76 E-value=80 Score=22.00 Aligned_cols=27 Identities=19% Similarity=0.358 Sum_probs=22.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy9275 75 SDRAKLEVLEKVIEGYRQRMEHIEADQ 101 (284)
Q Consensus 75 ~l~~ki~eLE~~l~~~R~~~~~~~~~l 101 (284)
.-...|.+.|+.+++..+.+..++-+.
T Consensus 28 erk~~l~~ie~~leEA~ell~qMelEv 54 (89)
T d1vcsa1 28 EKKQMVANVEKQLEEARELLEQMDLEV 54 (89)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 466788999999999999999977665
No 9
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=30.47 E-value=89 Score=22.41 Aligned_cols=8 Identities=13% Similarity=0.040 Sum_probs=4.8
Q ss_pred eeecccCH
Q psy9275 124 QMEADNNR 131 (284)
Q Consensus 124 IL~lr~NP 131 (284)
++++-.|=
T Consensus 73 lV~lG~g~ 80 (133)
T d1fxkc_ 73 IMSVGAGV 80 (133)
T ss_dssp EEEEETTE
T ss_pred EEEecCCe
Confidence 46776664
No 10
>d1i3za_ d.93.1.1 (A:) Ews/fli1 activated transcript 2, Eat2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=30.18 E-value=21 Score=25.23 Aligned_cols=55 Identities=11% Similarity=0.027 Sum_probs=32.1
Q ss_pred CeeEEEeeccCCCCCceEEEecCCeeeeeCCcc-----hhhhHHHHHHHhhhCCCchhhh
Q psy9275 208 CMYKLASMYADGPDENLLFQSTEGQLNLIETDY-----SKVLKPLLDLHLGRHHSIPMLL 262 (284)
Q Consensus 208 g~~rL~S~Ya~s~ed~LvF~~~~G~mkll~s~f-----~~~l~~~i~~wl~~~~SIPaFL 262 (284)
|.|-|+=.+...-..+.|++..+|...+.+.+. -.++.++|++|-.....+||-|
T Consensus 38 g~~~LSv~~~~~v~H~~I~~~~~g~~~~~~~~~~~~~~F~sl~~LV~~y~~~~~gl~~~L 97 (103)
T d1i3za_ 38 GALCLCVSFKKLVYSYRIFREKHGYYRIETDAHTPRTIFPNLQELVSKYGKPGQGLVVHL 97 (103)
T ss_dssp TCEEEEEECSSSEEEEEEEECTTSCEEECBCTTSCCCEESSSHHHHHHTTSSSSSSSSCC
T ss_pred CCEEEEEEeCCeEEEEEeEEcCCCcEEEeccCCcCccccCCHHHHHHHhhhCCCCCeEeC
Confidence 455554343322223455555566655544322 2579999999988777777654
No 11
>d2asba3 d.52.3.1 (A:263-329) Transcription factor NusA, C-terminal domains {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=27.16 E-value=15 Score=25.11 Aligned_cols=14 Identities=21% Similarity=0.449 Sum_probs=11.3
Q ss_pred HHHhhceEEEee-CC
Q psy9275 195 VYLLFGYKVDRT-NC 208 (284)
Q Consensus 195 v~~LlGYkIdf~-ng 208 (284)
...|+||+||+. ++
T Consensus 51 as~Ltg~~IdI~~es 65 (67)
T d2asba3 51 AARLTGWRIDIRGDA 65 (67)
T ss_dssp HHHHHSCEEEEEESS
T ss_pred HHHHHCCEEEEEeCC
Confidence 567999999987 43
No 12
>d1a81a2 d.93.1.1 (A:138-262) Syk tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.05 E-value=23 Score=26.15 Aligned_cols=33 Identities=18% Similarity=0.180 Sum_probs=22.5
Q ss_pred CCeeeeeCCcchhhhHHHHHHHhhhCCCchhhh
Q psy9275 230 EGQLNLIETDYSKVLKPLLDLHLGRHHSIPMLL 262 (284)
Q Consensus 230 ~G~mkll~s~f~~~l~~~i~~wl~~~~SIPaFL 262 (284)
+|..-+.+...-.++.++|++|-.....+||.|
T Consensus 86 ~g~~~~~~~~~F~sL~~LI~~y~~~~~gL~~~L 118 (125)
T d1a81a2 86 TGKLSIPEGKKFDTLWQLVEHYSYKADGLLRVL 118 (125)
T ss_dssp TSCEECTTSCCBSCHHHHHHHHTTCCTTSSSCC
T ss_pred CCcEeccCCcccCCHHHHHHHHhhCCCCCCccC
Confidence 444444333334689999999988777788764
No 13
>d1k9aa2 d.93.1.1 (A:77-177) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.03 E-value=33 Score=24.05 Aligned_cols=33 Identities=18% Similarity=0.157 Sum_probs=23.5
Q ss_pred CCeeeeeCCcchhhhHHHHHHHhhhCCCchhhh
Q psy9275 230 EGQLNLIETDYSKVLKPLLDLHLGRHHSIPMLL 262 (284)
Q Consensus 230 ~G~mkll~s~f~~~l~~~i~~wl~~~~SIPaFL 262 (284)
+|+.-+.+...-.++.++|++|-.....+||.|
T Consensus 59 ~~~~~~~~~~~F~sl~~LV~~y~~~~~gl~~~L 91 (101)
T d1k9aa2 59 ASKLSIDEEVYFENLMQLVEHYTTDADGLCTRL 91 (101)
T ss_dssp TTEEESSSSSCBSSHHHHHHHHHHCCTTSSSCC
T ss_pred CCCceecCCcccCCHHHHHHHHhhCCCCCceeC
Confidence 445544443334689999999998888888865
No 14
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=22.49 E-value=1.2e+02 Score=21.37 Aligned_cols=31 Identities=16% Similarity=0.230 Sum_probs=25.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9275 166 LNNKIKSLELQGKRLREVYKAASQEFRETVY 196 (284)
Q Consensus 166 Lk~qi~~~eKr~~RLKEVF~~Ks~EFReav~ 196 (284)
-+.++..+.++..=++.-|+.--.+||+.|-
T Consensus 91 r~~q~~~L~~kf~e~m~~yq~~q~~yr~~~k 121 (124)
T d1ez3a_ 91 RKTQHSTLSRKFVEVMSEYNATQSDYRERCK 121 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4557888888888888888888888998874
No 15
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=20.53 E-value=1e+02 Score=19.78 Aligned_cols=48 Identities=13% Similarity=0.052 Sum_probs=27.4
Q ss_pred HHH-HHHHHHHHHHHHHHHHhhhhhH----HH-HHHHHHHHHhHHHHHHHHHHH
Q psy9275 136 QMA-GMQKLNSKIKSLELQGKRLREV----YK-AAKLNNKIKSLELQGKRLREV 183 (284)
Q Consensus 136 ~~~-~le~Lk~ENe~L~~~l~~~e~~----~E-~~~Lk~qi~~~eKr~~RLKEV 183 (284)
|+. .++.++.+.+.+..+|..-.-. .+ +..-+.++...+....+|.+.
T Consensus 8 RL~K~l~kl~~~i~~~~~kL~N~~F~~kAP~~Vv~~~k~kl~~~~~~~~~l~~~ 61 (66)
T d1ivsa1 8 RQEKRLKELLALAERSQRKLASPGFREKAPKEVVEAEEARLKENLEQAERIREA 61 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSTTHHHHSCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCChHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554 7888888888888887654322 11 333344455555555555443
Done!