RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9275
(284 letters)
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer,
kinetochore, mitosis, spindle checkpoint protein,
nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Length = 123
Score = 109 bits (275), Expect = 2e-30
Identities = 48/119 (40%), Positives = 80/119 (67%), Gaps = 4/119 (3%)
Query: 162 KAAKLNNKIKSLELQGKRLREVYKAASQEFRETVYLLFGYKVD-RTNCMYKLASMYADGP 220
+ A+L +++S EL+ +RL+EV++ QEFR+ Y L GY++D T Y+L S+YA+ P
Sbjct: 5 EVAELKKQVESAELKNQRLKEVFQTKIQEFRKACYTLTGYQIDITTENQYRLTSLYAEHP 64
Query: 221 DENLLFQ---STEGQLNLIETDYSKVLKPLLDLHLGRHHSIPMLLSALTQELFQRQTMS 276
+ L+F+ + ++ L+ET++S + L+++HL R SIP LS+LT ELF RQT++
Sbjct: 65 GDCLIFKATSPSGSKMQLLETEFSHTVGELIEVHLRRQDSIPAFLSSLTLELFSRQTVA 123
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.9 bits (131), Expect = 1e-08
Identities = 50/371 (13%), Positives = 113/371 (30%), Gaps = 119/371 (32%)
Query: 4 RALKALK-------------GKSTLKVLVIL---VELG------YLSSNRERERDELLR- 40
+AL L+ GK+ + + V L V+ +L+ + +L
Sbjct: 142 QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM 201
Query: 41 --------EKELKEKVDH---LTYQMEWRALKGNATFSESAAPPGSDRAKLEVLEKVIEG 89
+ + DH + ++ + L VL V
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE----NC-LLVLLNV--- 253
Query: 90 YRQRMEHIEA-DQG---LVCVIPGQNSEKVAQQKVQELQMEADNNRETVKQMAGM--QKL 143
Q + A + L+ Q ++ ++ + ++ + T ++ + + L
Sbjct: 254 --QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311
Query: 144 NSKIKSLELQ------------GKRLREV---------YKAAKLNNKIK-SLE-LQGKRL 180
+ + + L + + +R+ KL I+ SL L+
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY 371
Query: 181 REVYKAASQEFRETVY-------LLFGYKVDRT--NCMYKLA--SMYADGPDENL----- 224
R+++ S F + + L++ + + KL S+ P E+
Sbjct: 372 RKMFDRLSV-FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS 430
Query: 225 LFQSTEGQLN--------LIET-------DYSKVLKPLLD----LHLGRHHSIPMLLSAL 265
++ + +L +++ D ++ P LD H+G H L +
Sbjct: 431 IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH------LKNI 484
Query: 266 TQ----ELFQR 272
LF+
Sbjct: 485 EHPERMTLFRM 495
Score = 31.4 bits (70), Expect = 0.42
Identities = 33/242 (13%), Positives = 66/242 (27%), Gaps = 62/242 (25%)
Query: 32 ERERDELLREKELKEKVDHLTYQMEWRALKGNATFSESAAPPG----SDRAKLEVLEKVI 87
+ E D ++ K+ L + + + + F E K E + +
Sbjct: 48 KEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSM 107
Query: 88 EGYRQRMEHIEADQGLVCVIPGQN---SEKVAQ--QKVQELQMEADNNRETVKQMAGMQK 142
R +E + V N + + Q + EL+ + + G
Sbjct: 108 M-TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR---PAKNVLIDGVLGS-- 161
Query: 143 LNSKIKSLELQGKR-LREVYKAAKLNNKIKSLELQGKRLREVYKAASQEFRETVYLLFGY 201
GK + A + S ++Q K +++ +L
Sbjct: 162 -----------GKTWV-----ALDV---CLSYKVQCKMDFKIF-----------WLNLKN 191
Query: 202 KVDRTNCM-------YKLASMYADGPDEN----LLFQSTEGQLN--LIETDYSKVLKPL- 247
+ Y++ + D + L S + +L L Y L L
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL--LV 249
Query: 248 LD 249
L
Sbjct: 250 LL 251
Score = 29.1 bits (64), Expect = 2.0
Identities = 30/205 (14%), Positives = 64/205 (31%), Gaps = 34/205 (16%)
Query: 89 GYRQRMEHIEAD--QGLVCVIPGQNSEKVAQQKVQELQMEADNNRET---VKQMAGMQKL 143
Y+ + E C + VQ++ + E + +
Sbjct: 17 QYKDILSVFEDAFVDNFDC------------KDVQDMPKSILSKEEIDHIIMSKDAVSGT 64
Query: 144 NSKIKSLELQGKRLREVYKAAKLN-------NKIKSLELQGKRLREVYKAASQEFRETVY 196
+L + + + + + L + IK+ + Q + +Y
Sbjct: 65 LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124
Query: 197 LLFGYKVDRTNCMYKL-ASMYADGPDENLLFQSTEG---QLNLIETDYSKVLKPLLD--- 249
+ Y V R KL ++ P +N+L G ++ S ++ +D
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI 184
Query: 250 --LHLGRHHSIPMLLSALTQELFQR 272
L+L +S +L L Q+L +
Sbjct: 185 FWLNLKNCNSPETVLEML-QKLLYQ 208
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.0 bits (111), Expect = 4e-06
Identities = 36/177 (20%), Positives = 55/177 (31%), Gaps = 80/177 (45%)
Query: 136 QMAGMQKLNSKIKSLELQGKRLREVYKAAK----------------------LNNKIKSL 173
Q GM G L + KAA+ +NN +L
Sbjct: 1627 QEQGM-------------GMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNP-VNL 1672
Query: 174 EL-----QGKRLREVYKAASQEFRETVYLLFGYKVDRTNCMYKLASMYADGPDENLLFQS 228
+ +GKR+RE Y A ++F VD K+ + + F+S
Sbjct: 1673 TIHFGGEKGKRIRENYSA----------MIFETIVDGKLKTEKIFK-EINEHSTSYTFRS 1721
Query: 229 TEGQLNLIETDYS------------KVLK-----PLLDLHLGRHHSIPMLL---SAL 265
+G L+ T ++ + LK P G HS L +AL
Sbjct: 1722 EKGLLSA--TQFTQPALTLMEKAAFEDLKSKGLIPADATFAG--HS----LGEYAAL 1770
Score = 46.2 bits (109), Expect = 8e-06
Identities = 45/255 (17%), Positives = 87/255 (34%), Gaps = 83/255 (32%)
Query: 3 W-RALKALK---GKSTLKV-------LVIL--------VELGYLSSNRERERDELLREKE 43
W RA K G S L + L I + Y + E D L+ ++
Sbjct: 1646 WNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEK 1705
Query: 44 LKEKVD---------------HLTY--Q-----ME---WRALK------GNATF---S-- 67
+ ++++ T Q ME + LK +ATF S
Sbjct: 1706 IFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLG 1765
Query: 68 E-SA--APPG----SDRAKL-----EVLEKVIEGYRQRMEHIEADQGLVCVIPGQNSEKV 115
E +A + ++ ++ + R E ++ G++ + PG+ +
Sbjct: 1766 EYAALASLADVMSIESLVEVVFYRGMTMQVAVP----RDELGRSNYGMIAINPGRVAASF 1821
Query: 116 AQQKVQELQMEADNNRETVKQMA-----GMQKLNS-KIKSLELQGKRLREVYKAAKLNNK 169
+Q+ +Q + + ++ Q + + +++L+ + V KL K
Sbjct: 1822 SQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALD----TVTNVLNFIKL-QK 1876
Query: 170 IKSLELQGK-RLREV 183
I +ELQ L EV
Sbjct: 1877 IDIIELQKSLSLEEV 1891
Score = 38.1 bits (88), Expect = 0.004
Identities = 40/236 (16%), Positives = 78/236 (33%), Gaps = 51/236 (21%)
Query: 60 LKGNATFSESAAPPGSDRAKLEVLEKVIEGYRQRMEHIEADQGLVCVIPGQNS--EKVAQ 117
L+ F++ P A + E + + ++ + V P + ++V
Sbjct: 33 LQ--EQFNKILPEPTEGFAADDEPTTPAELVGKFLGYV-SSL----VEPSKVGQFDQVLN 85
Query: 118 QKVQELQME--ADNNRETVKQMAGMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLEL 175
+ E + N+ + KL + + ++ K L + Y A++ K +
Sbjct: 86 LCLTEFENCYLEGNDIHAL-----AAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKK 140
Query: 176 QGKRLREVYKAASQEFRETVYLLFG-------YKVDRTNCMYKLASMYADGPD--ENLLF 226
L ++A + + +FG Y + +L +Y +L+
Sbjct: 141 SNSAL---FRAVGEG-NAQLVAIFGGQGNTDDY-FE------ELRDLYQTYHVLVGDLIK 189
Query: 227 QSTEGQLNLIET--DYSKVLKPLLDLH--LGRHHSIP---MLLSA--------LTQ 267
S E LI T D KV L++ L + P LLS + Q
Sbjct: 190 FSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQ 245
Score = 30.4 bits (68), Expect = 0.80
Identities = 9/37 (24%), Positives = 19/37 (51%), Gaps = 9/37 (24%)
Query: 58 RALKG-NATFSESAAPPGSDRAKLEVLEKVIEGYRQR 93
++L G N T ++ AP G D++++ + +R
Sbjct: 384 QSLYGLNLTLRKAKAPSGLDQSRIP--------FSER 412
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 40.9 bits (96), Expect = 3e-04
Identities = 27/197 (13%), Positives = 68/197 (34%), Gaps = 34/197 (17%)
Query: 2 EWRALKALKGKSTLKVLVILVELGYLSSNRERERDELLREKELKEKVDHLTYQMEWRALK 61
R A ++ ++ Y +RE +L E E+ L +E
Sbjct: 873 HVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLE----- 927
Query: 62 GNATFSESAAPPGSDRAKLEVLEKVIEGYRQRMEHIEADQGLVCVIPGQNSEKVAQQKVQ 121
K+ L++ I+ + + + N E + +
Sbjct: 928 ----------------NKIMQLQRKIDEQNKEYKSLLEKM--------NNLEITYSTETE 963
Query: 122 ELQMEADNNRETVKQMAGMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRLR 181
+L+ + + R + ++ + +++ SL+ + +LR+ + + + K++E + +
Sbjct: 964 KLRSDVERLRMSEEE---AKNATNRVLSLQEEIAKLRK--ELHQTQTEKKTIEEWADKYK 1018
Query: 182 EVYKAASQEFRETVYLL 198
+ E +E LL
Sbjct: 1019 HETEQLVSELKEQNTLL 1035
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 33.2 bits (75), Expect = 0.059
Identities = 17/104 (16%), Positives = 35/104 (33%), Gaps = 40/104 (38%)
Query: 31 RERERDELLREKELKEKVDHLTYQMEWRALKGNATFSESAAPPGSDRAKLEVLEKVIEGY 90
RE E+ + L+E + KV + EWR E A + LE E
Sbjct: 91 RE-EQRKRLQELDAASKVM----EQEWR---------EKA------KKDLE------EWN 124
Query: 91 RQRMEHIEADQGLVCVIPGQNSEKVAQQKVQELQMEADNNRETV 134
+++ E +E ++ ++ + + + +
Sbjct: 125 QRQSEQVEKNK--------------INNRIADKAFYQQPDADII 154
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 33.7 bits (77), Expect = 0.080
Identities = 29/164 (17%), Positives = 62/164 (37%), Gaps = 13/164 (7%)
Query: 31 RERERDELLREKELKEKVDHLTYQMEWRALKGNATFSESAAPPGSDRAKLEVLEKVIEGY 90
E + E + +EK Q + +A +E AK + LE+++
Sbjct: 878 AELKELEQKHTQLCEEKNL---LQEKLQAETELYAEAEEMR--VRLAAKKQELEEILHEM 932
Query: 91 RQRMEHIEADQGLVCVIPGQNSEKVAQQKVQELQMEADNNRETVKQMAGMQK-LNSKIKS 149
R+E E + Q +K QQ++ +L+ + + +++ + + KIK
Sbjct: 933 EARIEEEEERSQQL-----QAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKK 987
Query: 150 LELQGKRLREVYKAAKLNNKIKSLELQGKRLREVYKAASQEFRE 193
+E + + + KL + K LE + L ++ +
Sbjct: 988 MEDDILIMED--QNNKLTKERKLLEERVSDLTTNLAEEEEKAKN 1029
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 0.81
Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 13/42 (30%)
Query: 41 EK-ELKEKVDHLTYQMEWRALKGNATFSESAAPPGSDRAKLE 81
EK LK +++ +LK +++ +AP + +A +E
Sbjct: 18 EKQALK--------KLQ-ASLK---LYADDSAPALAIKATME 47
Score = 26.5 bits (57), Expect = 8.3
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 19/44 (43%)
Query: 135 KQMAGMQKLNSKIKSLELQGKRLREVY---KAAKLNNKIK-SLE 174
KQ ++KL + +K +Y A L IK ++E
Sbjct: 19 KQ--ALKKLQASLK-----------LYADDSAPAL--AIKATME 47
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis,
ATP-binding, nucleotide-binding, poxvirus, transferase;
HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB:
2w0s_A*
Length = 204
Score = 28.8 bits (65), Expect = 1.4
Identities = 10/55 (18%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 74 GSDRA-KLEVLEKVIEGYRQRMEHIEADQGLVCVIPGQNSEKVAQQKVQELQMEA 127
G + + +KV++ Y++ + E +I + E V ++ ++ + +EA
Sbjct: 140 GEEIYEDVTFQQKVLQEYKKMI---EEGDIHWQIISSEFEEDVKKELIKNIVIEA 191
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 29.3 bits (65), Expect = 1.4
Identities = 28/149 (18%), Positives = 59/149 (39%), Gaps = 5/149 (3%)
Query: 35 RDELLRE--KELKEKVDHLTYQMEWRALKGNATFSESAAPPGSDRAKLEVLEKVIEGYRQ 92
R+ L+R ++L+E+ Y+ +R K + P + E E +
Sbjct: 275 REMLIRVNMEDLREQTHTRHYE-LYRRCKLEEMGFKDTDPDSKPFSLQETYEAKRNEFLG 333
Query: 93 RMEHIEADQGLVCVIPGQNSEKVAQQKVQELQMEADNNRETVKQMAGMQKLNSKIKSLEL 152
++ E + + V + E ++ +EL + D ++ + +KL K KSL+
Sbjct: 334 ELQKKEEEMRQMFVQRVKEKEAELKEAEKELHEKFDRLKKLHQDE--KKKLEDKKKSLDD 391
Query: 153 QGKRLREVYKAAKLNNKIKSLELQGKRLR 181
+ ++ AA+L S + L+
Sbjct: 392 EVNAFKQRKTAAELLQSQGSQAGGSQTLK 420
>2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme,
streptolydigin, antibiotic, transcription regulation;
HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2
PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D*
2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3aoh_D* 3aoi_D*
3dxj_D* 3eql_D* 1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D
Length = 1524
Score = 29.4 bits (66), Expect = 1.6
Identities = 31/177 (17%), Positives = 51/177 (28%), Gaps = 15/177 (8%)
Query: 15 LKVLVILVELGYLSSNRERERDELLREKELK-EKVDHLTYQM--EWRALKGNATFSESAA 71
L + +E R + ++ + + E D + + E +
Sbjct: 330 TVYLTLFLEWTEPKDYRVQPHMNVVVPEGARVEAGDKIVAAIDPEEEVIAEAEGVVHLHE 389
Query: 72 PPGSDRAKLEVLEKVIEGYRQRMEHIEADQGLVCVIPGQNSEKVAQQKVQELQMEADNNR 131
P K V E + G V G+ V + +L
Sbjct: 390 PASILVVKARVYP--FEDDVEVSTGDRVAPGDVLADGGKVKSDVYGRVEVDLVRNVVRVV 447
Query: 132 ETVKQMAGM-----QKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRLREV 183
E+ A M Q+L ++ LE K L E K + K+ KRL V
Sbjct: 448 ESYDIDARMGAEAIQQLLKELD-LEALEKELLEEMKHPSRARRAKAR----KRLEVV 499
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Length = 526
Score = 28.0 bits (62), Expect = 4.0
Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 10/82 (12%)
Query: 113 EKVAQQKVQELQMEADNNRETVKQMAGMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKS 172
E+ Q K++EL+ E N +K N KI E GK L EVY +
Sbjct: 92 ERGIQAKLKELEDEQRNELVRLKY-------NDKI--KEKFGKELEEVYNFMNGEANAEI 142
Query: 173 LEL-QGKRLREVYKAASQEFRE 193
+ Q L + + ++ E
Sbjct: 143 EDEKQFDILNKAVTSYNKILTE 164
>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2;
short-chain dehydrogenase/reductase, rossman fold; 1.95A
{Streptomyces fradiae}
Length = 511
Score = 27.5 bits (61), Expect = 5.5
Identities = 15/79 (18%), Positives = 27/79 (34%), Gaps = 7/79 (8%)
Query: 31 RERERDELLREKELKEKVDHLTYQMEWRALKGNATFSESA-------APPGSDRAKLEVL 83
L+ D Y++ W+AL ++ + APP +D L+ L
Sbjct: 7 HHHHSSGLVPRGSHMSPTDAWRYRVTWKALTESSPVRPHSIGRCLLVAPPTTDGELLDGL 66
Query: 84 EKVIEGYRQRMEHIEADQG 102
V+ + +E G
Sbjct: 67 TTVLSERGASVARLEVPIG 85
>1jwq_A N-acetylmuramoyl-L-alanine amidase CWLV; open alpha-beta-alpha,
hydrolase; 1.80A {Paenibacillus polymyxa} SCOP: c.56.5.6
Length = 179
Score = 26.8 bits (60), Expect = 5.7
Identities = 9/29 (31%), Positives = 19/29 (65%), Gaps = 3/29 (10%)
Query: 20 ILVELGYLSSNRERERDELLREKELKEKV 48
+L+E+GYLS+ +E L +++ + +V
Sbjct: 139 VLLEVGYLSNAKEE---ATLFDEDFQNRV 164
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right
handed coiled-coil, ATPase/SY ATP binding, membrane,
hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E
3j0j_J
Length = 187
Score = 26.8 bits (59), Expect = 6.6
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Query: 113 EKVAQQKVQELQMEADNNRETVKQMA---GMQKLNSKIKSLELQGKR-LREVYKAAKLNN 168
+ + ++Q L EA+ E VK+ A L ++ ++LE Q + LR A +L
Sbjct: 8 SQEVEAEIQALLQEAEAKAEAVKREAEEKAKALLQARERALEAQYRAALRRAESAGELLV 67
Query: 169 KIKSLELQGKRLREVYKAASQEFRE 193
+ +G+ L EV + +
Sbjct: 68 ATARTQARGEVLEEVRRRVREALEA 92
>3ne8_A N-acetylmuramoyl-L-alanine amidase; structural genomics, PSI-2,
protein structure initiative, MI center for structural
genomics, MCSG; 1.24A {Bartonella henselae}
Length = 234
Score = 26.8 bits (60), Expect = 7.1
Identities = 6/16 (37%), Positives = 12/16 (75%)
Query: 20 ILVELGYLSSNRERER 35
+L+E+GYLS+ + +
Sbjct: 187 VLIEIGYLSNKEDEKL 202
>3czx_A Putative N-acetylmuramoyl-L-alanine amidase; structural genomics,
PSI, MCSG, protein structure initiative; 1.60A
{Neisseria meningitidis MC58}
Length = 182
Score = 26.4 bits (59), Expect = 8.3
Identities = 3/16 (18%), Positives = 9/16 (56%)
Query: 20 ILVELGYLSSNRERER 35
I+ E ++S++ +
Sbjct: 142 IVFEPFFISNDTDLAL 157
>3qxg_A Inorganic pyrophosphatase; hydrolase, magnesium binding site, NEW
YORK research center for structural genomics; HET: TLA;
1.24A {Bacteroides thetaiotaomicron} PDB: 3qu2_A*
3qx7_A 3quq_A* 3r9k_A 3qut_A 3qu9_A* 3qu7_A 3qu5_A
3qyp_A 3quc_A 3qub_A 3qu4_A
Length = 243
Score = 26.5 bits (59), Expect = 9.9
Identities = 5/43 (11%), Positives = 15/43 (34%)
Query: 1 MEWRALKALKGKSTLKVLVILVELGYLSSNRERERDELLREKE 43
+ +G++ + I+ + + E + + EK
Sbjct: 57 LSREEAYMHEGRTGASTINIVFQRELGKEATQEEIESIYHEKS 99
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.130 0.352
Gapped
Lambda K H
0.267 0.0513 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,061,292
Number of extensions: 232233
Number of successful extensions: 724
Number of sequences better than 10.0: 1
Number of HSP's gapped: 708
Number of HSP's successfully gapped: 49
Length of query: 284
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 191
Effective length of database: 4,105,140
Effective search space: 784081740
Effective search space used: 784081740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 57 (26.2 bits)