RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9275
         (284 letters)



>d1fzva_ g.17.1.1 (A:) Placenta growth factor-1, PLGF-1 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 100

 Score = 24.4 bits (53), Expect = 7.3
 Identities = 6/40 (15%), Positives = 14/40 (35%)

Query: 172 SLELQGKRLREVYKAASQEFRETVYLLFGYKVDRTNCMYK 211
           S E++    +EV+  +     E +  +          M+ 
Sbjct: 1   SSEVEVVPFQEVWGRSYCRALERLVDVVSEYPSEVEHMFS 40


>d1i2aa_ e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Methanococcus
           jannaschii [TaxId: 2190]}
          Length = 212

 Score = 25.5 bits (55), Expect = 7.5
 Identities = 16/113 (14%), Positives = 33/113 (29%), Gaps = 14/113 (12%)

Query: 157 LREVYKAAKLNNKIKSLELQGKRLREVYKAASQEFRETVYLLFGYKVDRTNCMY------ 210
           ++E  + AK  N  +S E          +      +  V L  G   +    +       
Sbjct: 10  VKEARELAKPRNFTQSFEFIATLKEIDMRKPENRIKTEVVLPHGRGKEAKIAVIGTGDLA 69

Query: 211 ---KLASMYADGPDENLLFQSTEGQLNLIETDYSKV-----LKPLLDLHLGRH 255
              +   +     +E       + +L  I   +        L PL+  ++G  
Sbjct: 70  KQAEELGLTVIRKEEIEELGKNKRKLRKIAKAHDFFIAQADLMPLIGRYMGVI 122


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.130    0.352 

Gapped
Lambda     K      H
   0.267   0.0686    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 951,377
Number of extensions: 41642
Number of successful extensions: 148
Number of sequences better than 10.0: 1
Number of HSP's gapped: 148
Number of HSP's successfully gapped: 16
Length of query: 284
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 200
Effective length of database: 1,254,276
Effective search space: 250855200
Effective search space used: 250855200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 52 (23.9 bits)