BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy9276
         (583 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1BJF|A Chain A, Crystal Structure Of Recombinant Bovine Neurocalcin Delta
           At 2.4 Angstroms
 pdb|1BJF|B Chain B, Crystal Structure Of Recombinant Bovine Neurocalcin Delta
           At 2.4 Angstroms
          Length = 193

 Score = 30.8 bits (68), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 5/85 (5%)

Query: 402 SEAERRQLYGEPYDRAFQKKYAGHILRLEKINKDVNTVLASLSVNLKKLSVTSENMSSQ- 460
           S  E +++YG  +      K+A H+ R    N D         +    LSVTS     Q 
Sbjct: 44  SMEEFKKIYGNFFPYGDASKFAEHVFRTFDANGDGTIDFREFII---ALSVTSRGKLEQK 100

Query: 461 -LYALSPSDLQQETYIAAQEIVDTV 484
             +A S  DL    YI+  E+++ V
Sbjct: 101 LKWAFSMYDLDGNGYISKAEMLEIV 125


>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
          Length = 487

 Score = 30.8 bits (68), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 14/34 (41%), Positives = 24/34 (70%)

Query: 428 RLEKINKDVNTVLASLSVNLKKLSVTSENMSSQL 461
           RL+K+N + +  LAS +  L++L V  +N++SQL
Sbjct: 453 RLKKLNGEADLALASANATLQELVVREQNLASQL 486


>pdb|4H0O|A Chain A, Crystal Structure Of Acetate Kinase From Entamoeba
           Histolytica
 pdb|4H0O|B Chain B, Crystal Structure Of Acetate Kinase From Entamoeba
           Histolytica
          Length = 404

 Score = 29.3 bits (64), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 24/103 (23%), Positives = 57/103 (55%), Gaps = 12/103 (11%)

Query: 466 PSDLQQETYIAAQEIVDTVNKKNGNKIVDDQPVVSLITDLTALVLQIKTLSHSSRS---A 522
           P D+ Q+  +  +++VD +NKK+G   V +     L +D+  ++ +I+T    +++   A
Sbjct: 253 PIDMIQQ--VGIEKVVDILNKKSGLLGVSE-----LSSDMRDILHEIETRGPKAKTCQLA 305

Query: 523 YEVEV--LNKTMSDIYKKLSPNNQSVFENCIGVHMEQIKAALA 563
           ++V +  L KT+  +  ++   +  VF + +G+ + Q++ A+ 
Sbjct: 306 FDVYIKQLAKTIGGLMVEIGGLDLLVFTDQMGLEVWQVRKAIC 348


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.131    0.367 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,206,124
Number of Sequences: 62578
Number of extensions: 588610
Number of successful extensions: 1359
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1358
Number of HSP's gapped (non-prelim): 10
length of query: 583
length of database: 14,973,337
effective HSP length: 104
effective length of query: 479
effective length of database: 8,465,225
effective search space: 4054842775
effective search space used: 4054842775
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)