BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9276
(583 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8C735|LIN9_MOUSE Protein lin-9 homolog OS=Mus musculus GN=Lin9 PE=2 SV=2
Length = 542
Score = 356 bits (913), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 191/439 (43%), Positives = 273/439 (62%), Gaps = 25/439 (5%)
Query: 143 SSPDRNLGQRVGMKLRNLLKLPKAYRFVCYEFFYSNIDRPLF-NDNDFITCMKESFPQLK 201
S+PD+ Q++G +LRNLLKLPKA+++ YE+FYSNID+PLF DNDF C+KESFP LK
Sbjct: 95 STPDKKASQKIGFRLRNLLKLPKAHKWCIYEWFYSNIDKPLFEGDNDFCVCLKESFPNLK 154
Query: 202 KYVFSRTEWSMVRRMVGKPRRCSSSFFTEERINLERRRNVIRYLQQGKCGDQTTVKDIPS 261
+R EW +RR++GKPRRCSS+FF EER L+++R IR LQQ K D + KD+P
Sbjct: 155 TRKLTRVEWGKIRRLMGKPRRCSSAFFEEERSALKQKRQKIRLLQQRKVADVSQFKDLPD 214
Query: 262 EIPIQLVVGTKVTARVRSPQDGLFTGVVDAYDTSNNTYRITFDRQGLGTQSIPDYEVLSN 321
EIP+ LV+GTKVTAR+R DGLFTG +DA DT N TYR+TFDR GLGT +IPDYEVLSN
Sbjct: 215 EIPLPLVIGTKVTARLRGIHDGLFTGQIDAVDTLNATYRVTFDRTGLGTHTIPDYEVLSN 274
Query: 322 DTPETLNRQSFLQ-----MFFASVPNDHTN-------RTGKP----EPEAMDANHIDKEL 365
+ ET+ +F Q FF + P H G P P + D E
Sbjct: 275 EPHETMPISAFGQKQRPSRFFMTPPRLHYTPPLQSPITDGDPLLGQSPWRSKVSGSDTE- 333
Query: 366 EGMLGEYPVELLEQVVRFKKLLKFKKTEVYQIRDMNSEAERRQLYGEPYDRAFQKKYAGH 425
LG +PVE L QV + K+L KK + ++R+MN+EAE+ + Y P FQ++YA
Sbjct: 334 --TLGGFPVEFLIQVTKLSKILMIKKEHIKKLREMNTEAEKLKSYSMPIGIEFQRRYATI 391
Query: 426 ILRLEKINKDVNTVLASLSVNLKKLSVTSENMSSQLYALSPSDLQQETYIAAQEIVDTVN 485
+L LE++NKD+N VL + +L+ + + A P+D+++ AQEIV N
Sbjct: 392 VLELEQLNKDLNKVLHKVQQYCYELA-PDQGLQP---ADQPTDMRRRCEEEAQEIVRQAN 447
Query: 486 KKNGNKIVDDQPVVSLITDLTALVLQIKTLSHSSR-SAYEVEVLNKTMSDIYKKLSPNNQ 544
+G V+++ + LI+ LTA++LQIK L+ +++E + L +++DI + +N
Sbjct: 448 SASGQPCVENENLTDLISRLTAILLQIKCLAEGGDLNSFEFKSLTDSLNDIKNTIDASNI 507
Query: 545 SVFENCIGVHMEQIKAALA 563
S F+N + +H+ I++ L+
Sbjct: 508 SCFQNNVEIHVAHIQSGLS 526
>sp|Q4R8N2|LIN9_MACFA Protein lin-9 homolog OS=Macaca fascicularis GN=LIN9 PE=2 SV=1
Length = 542
Score = 355 bits (911), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 190/438 (43%), Positives = 275/438 (62%), Gaps = 23/438 (5%)
Query: 143 SSPDRNLGQRVGMKLRNLLKLPKAYRFVCYEFFYSNIDRPLF-NDNDFITCMKESFPQLK 201
S+PD+ Q++G +LRNLLKLPKA+++ YE+FYSNID+PLF DNDF C+KESFP LK
Sbjct: 95 STPDKKASQKIGFRLRNLLKLPKAHKWCIYEWFYSNIDKPLFEGDNDFCVCLKESFPNLK 154
Query: 202 KYVFSRTEWSMVRRMVGKPRRCSSSFFTEERINLERRRNVIRYLQQGKCGDQTTVKDIPS 261
+R EW +RR++GKPRRCSS+FF EER L+++R IR LQQ K D + KD+P
Sbjct: 155 TRKLTRVEWGKIRRLMGKPRRCSSAFFEEERSALKQKRQKIRLLQQRKVADVSQFKDLPD 214
Query: 262 EIPIQLVVGTKVTARVRSPQDGLFTGVVDAYDTSNNTYRITFDRQGLGTQSIPDYEVLSN 321
EIP+ LV+GTKVTAR+R DGLFTG +DA DT N TYR+TFDR GLGT +IPDYEVLSN
Sbjct: 215 EIPLPLVIGTKVTARLRGVHDGLFTGQIDAVDTLNATYRVTFDRTGLGTHTIPDYEVLSN 274
Query: 322 DTPETLNRQSFLQ-----MFFASVPNDHTNRTGKPEPEAMDANHI------DKELEG--- 367
+ ET+ +F Q FF + P H T + MD + + ++ G
Sbjct: 275 EPHETMPIAAFGQKQRPSRFFMTPPRLHY--TPPLQSPIMDNDPLLGQSPWRSKISGSDT 332
Query: 368 -MLGEYPVELLEQVVRFKKLLKFKKTEVYQIRDMNSEAERRQLYGEPYDRAFQKKYAGHI 426
LG +PVE L QV R K+L KK + ++R+MN++AE+ + Y P FQ++YA +
Sbjct: 333 ETLGGFPVEFLIQVTRLSKILMIKKEHIKKLREMNTDAEKLKSYSMPISIEFQRRYATIV 392
Query: 427 LRLEKINKDVNTVLASLSVNLKKLSVTSENMSSQLYALSPSDLQQETYIAAQEIVDTVNK 486
L LE++NKD+N VL + +L+ + + A P+D+++ AQEIV N
Sbjct: 393 LELEQLNKDLNKVLHKVQQYCYELA-PDQGLQP---ADQPTDMRRRCEEEAQEIVRHANS 448
Query: 487 KNGNKIVDDQPVVSLITDLTALVLQIKTLSHSSR-SAYEVEVLNKTMSDIYKKLSPNNQS 545
G V+++ + LI+ LTA++LQIK L+ +++E + L +++DI + +N S
Sbjct: 449 STGQPCVENENLTDLISRLTAILLQIKCLAEGGDLNSFEFKSLTDSLNDIKSTIDASNIS 508
Query: 546 VFENCIGVHMEQIKAALA 563
F+N + +H+ I++ L+
Sbjct: 509 CFQNNVEIHVAHIQSGLS 526
>sp|Q5TKA1|LIN9_HUMAN Protein lin-9 homolog OS=Homo sapiens GN=LIN9 PE=1 SV=1
Length = 542
Score = 355 bits (910), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 192/439 (43%), Positives = 272/439 (61%), Gaps = 25/439 (5%)
Query: 143 SSPDRNLGQRVGMKLRNLLKLPKAYRFVCYEFFYSNIDRPLF-NDNDFITCMKESFPQLK 201
S+PD+ Q++G +LRNLLKLPKA+++ YE+FYSNID+PLF DNDF C+KESFP LK
Sbjct: 95 STPDKKASQKIGFRLRNLLKLPKAHKWCIYEWFYSNIDKPLFEGDNDFCVCLKESFPNLK 154
Query: 202 KYVFSRTEWSMVRRMVGKPRRCSSSFFTEERINLERRRNVIRYLQQGKCGDQTTVKDIPS 261
+R EW +RR++GKPRRCSS+FF EER L+++R IR LQQ K D + KD+P
Sbjct: 155 TRKLTRVEWGKIRRLMGKPRRCSSAFFEEERSALKQKRQKIRLLQQRKVADVSQFKDLPD 214
Query: 262 EIPIQLVVGTKVTARVRSPQDGLFTGVVDAYDTSNNTYRITFDRQGLGTQSIPDYEVLSN 321
EIP+ LV+GTKVTAR+R DGLFTG +DA DT N TYR+TFDR GLGT +IPDYEVLSN
Sbjct: 215 EIPLPLVIGTKVTARLRGVHDGLFTGQIDAVDTLNATYRVTFDRTGLGTHTIPDYEVLSN 274
Query: 322 DTPETLNRQSFLQ-----MFFASVPNDH-TNRTGKP----------EPEAMDANHIDKEL 365
+ ET+ +F Q FF + P H T P P + D E
Sbjct: 275 EPHETMPIAAFGQKQRPSRFFMTPPRLHYTPPLQSPIIDNDPLLGQSPWRSKISGSDTE- 333
Query: 366 EGMLGEYPVELLEQVVRFKKLLKFKKTEVYQIRDMNSEAERRQLYGEPYDRAFQKKYAGH 425
LG +PVE L QV R K+L KK + ++R+MN+EAE+ + Y P FQ++YA
Sbjct: 334 --TLGGFPVEFLIQVTRLSKILMIKKEHIKKLREMNTEAEKLKSYSMPISIEFQRRYATI 391
Query: 426 ILRLEKINKDVNTVLASLSVNLKKLSVTSENMSSQLYALSPSDLQQETYIAAQEIVDTVN 485
+L LE++NKD+N VL + +L+ + + A P+D+++ AQEIV N
Sbjct: 392 VLELEQLNKDLNKVLHKVQQYCYELA-PDQGLQP---ADQPTDMRRRCEEEAQEIVRHAN 447
Query: 486 KKNGNKIVDDQPVVSLITDLTALVLQIKTLSHSSR-SAYEVEVLNKTMSDIYKKLSPNNQ 544
G V+++ + LI+ LTA++LQIK L+ +++E + L +++DI + +N
Sbjct: 448 SSTGQPCVENENLTDLISRLTAILLQIKCLAEGGDLNSFEFKSLTDSLNDIKSTIDASNI 507
Query: 545 SVFENCIGVHMEQIKAALA 563
S F+N + +H+ I++ L+
Sbjct: 508 SCFQNNVEIHVAHIQSGLS 526
>sp|Q5RHQ8|LIN9_DANRE Protein lin-9 homolog OS=Danio rerio GN=lin9 PE=2 SV=1
Length = 543
Score = 340 bits (871), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 184/441 (41%), Positives = 275/441 (62%), Gaps = 26/441 (5%)
Query: 143 SSPDRNLGQRVGMKLRNLLKLPKAYRFVCYEFFYSNIDRPLF-NDNDFITCMKESFPQLK 201
++PD+ + Q++G++LRNLLKLPKA+++ YE+FYSNIDRPLF DNDF C+KESFP LK
Sbjct: 93 ATPDKRVSQKIGLRLRNLLKLPKAHKWCIYEWFYSNIDRPLFEGDNDFCLCLKESFPNLK 152
Query: 202 KYVFSRTEWSMVRRMVGKPRRCSSSFFTEERINLERRRNVIRYLQQGKCGDQTTVKDIPS 261
+R EW +RR++GKPRRCSS+FF EER+ L+++R +R LQQ K D + KD+P
Sbjct: 153 TRKLTRVEWGTIRRLMGKPRRCSSAFFAEERMALKQKRQKMRLLQQRKITDMSLCKDLPD 212
Query: 262 EIPIQLVVGTKVTARVRSPQDGLFTGVVDAYDTSNNTYRITFDRQGLGTQSIPDYEVLSN 321
EIP+ LV+GTKVTAR+R DGLFTG +DA DTS TYR+TFDR GLGT ++PDYEVLSN
Sbjct: 213 EIPLPLVIGTKVTARLRGVHDGLFTGQIDAVDTSAATYRVTFDRNGLGTHTVPDYEVLSN 272
Query: 322 DTPETLNRQSFLQ-------MFFASVPNDHTNRTGKPEPEAMDANHI------DKELEG- 367
+ ET+ +F Q F + P + TG + MD + + +L G
Sbjct: 273 EPHETMPISAFAQKQRPPRFQNFLTPPRG--SYTGSTQSILMDNDPLFSQSPWRSKLTGT 330
Query: 368 ---MLGEYPVELLEQVVRFKKLLKFKKTEVYQIRDMNSEAERRQLYGEPYDRAFQKKYAG 424
LG +PV+ L QV R K+L KK + +++MN+EAE+ + Y P QK+YA
Sbjct: 331 DGETLGGFPVKFLVQVTRLSKILMIKKEHIKHLKEMNTEAEKLKSYSMPIGLDLQKRYAT 390
Query: 425 HILRLEKINKDVNTVLASLSVNLKKLSVTSENMSSQLYALSPSDLQQETYIAAQEIVDTV 484
+L LE++NKD+N VL + +L+ + M A PS+L++ +Q+++
Sbjct: 391 TVLDLEQLNKDLNKVLHEVQQFCFELA-PDQGMQP---ADQPSELRRRCEEESQDVLRQN 446
Query: 485 NK-KNGNKIVDDQPVVSLITDLTALVLQIKTLSHSSR-SAYEVEVLNKTMSDIYKKLSPN 542
N +G V + + LI+ LTAL+LQI+ L+ +++E + L +++DI + +
Sbjct: 447 NTLASGEPRVQNTELTQLISRLTALLLQIRCLAEGGDLNSFEFKSLTDSLNDIKSSIDDS 506
Query: 543 NQSVFENCIGVHMEQIKAALA 563
N S F++ + +H+ I++ L+
Sbjct: 507 NLSCFQDNVEIHVAHIQSGLS 527
>sp|P30630|LIN9_CAEEL Protein lin-9 OS=Caenorhabditis elegans GN=lin-9 PE=1 SV=3
Length = 644
Score = 226 bits (575), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 140/446 (31%), Positives = 247/446 (55%), Gaps = 46/446 (10%)
Query: 156 KLRNLLKLPKAYRFVCYEFFYSNIDRPLFND-NDFITCMKESFPQLKKYVFSRTEWSMVR 214
KL NLL+ KA ++V EFFYS ID +F + N+F T ++ESFP LK + +R EW +R
Sbjct: 207 KLYNLLRYKKARQWVMCEFFYSAIDEQIFKEENEFATIIRESFPNLKNWNLTRIEWRSIR 266
Query: 215 RMVGKPRRCSSSFFTEERINLERRRNVIRYLQQGKCGDQTTV--KDIPSEIPIQLVVGTK 272
+++GKPRRCS FF EER+ LE +R IR + +G + ++ KD+P+++P +VVG +
Sbjct: 267 KLLGKPRRCSKVFFEEERMYLEEKRMKIRSVYEGSYLNDPSIDLKDLPAKLPRPMVVGNR 326
Query: 273 VTARVRSPQDGLFTGVVDAYDTSNNTYRITFDRQGLGTQSIPDYEVLSNDTPETLNRQSF 332
V AR+R+P DG+++G++DA +RI FD+ + + D E+L + + L+ F
Sbjct: 327 VFARIRNPYDGIYSGIIDAVIPKG--FRIIFDKPDIPPTLVSDTEILLDGKLDLLSIAYF 384
Query: 333 LQM-----------FFASVPNDH-------------TNRTGKPEPEAMDANHIDKELEG- 367
++ F A+V + R+G P M N D+ L G
Sbjct: 385 IEQANSKLPSGVRPFVAAVRDSSHPHLVRDVLVSRKIERSGGP---LMGPN--DERLNGK 439
Query: 368 ---MLGEYPVELLEQVVRFKKLLKFKKTEVYQIRDMNSEAERRQLYGEPYDRAFQKKYAG 424
M+G +P++ L +V+ KL+ KK + Q+ ++N++AE + + + Y +AFQ+KYA
Sbjct: 440 NAEMVGNFPLKFLVNLVKLTKLIDIKKGLIRQLNELNADAEIQNMTSDKYSKAFQEKYAK 499
Query: 425 HILRLEKINKDVNTVLASLSVNLKKLSVTSENMSSQLYALSPSDLQQETYIAAQEIVDTV 484
I+ LE +N++++ + + + + +S ++S+ + P ++Q A V+
Sbjct: 500 TIIDLEHVNQNIDINMNGIQDH--HMYFSSNDISTS--NMKPEAVRQMCSQQAGRFVEHC 555
Query: 485 NKKNGNKIVDDQPVVSLITDLTALVLQIKTLSHSSRSAYEVEVLNKTMSDIYKKLSPNNQ 544
N+ V++ ++LI LTA++LQ++T+ SA +++ L +S+I + P N
Sbjct: 556 NQGLN---VENVHALTLIQSLTAVLLQVRTMGTQKISAVDLQSLGDAISEIRTAIHPRNV 612
Query: 545 SVFENCIGVHMEQIKAALAGERGSLA 570
+ F++ + VHM+Q + E G+LA
Sbjct: 613 AFFQDYVEVHMKQFHTIML-ESGALA 637
>sp|Q6A333|ALY2_ARATH Protein ALWAYS EARLY 2 OS=Arabidopsis thaliana GN=ALY2 PE=1 SV=1
Length = 1051
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 89/187 (47%), Gaps = 28/187 (14%)
Query: 156 KLRNLLKLPKAYRFVCYEFFYSNIDRPLFNDNDFITCMKE----SFPQLKKYVFSRTEWS 211
KL L P A R +E+FYS ID P F+ +F+ + P+L +R EWS
Sbjct: 616 KLATSLSFPFARRRCIFEWFYSAIDHPWFSKMEFVDYLNHVGLGHIPRL-----TRLEWS 670
Query: 212 MVRRMVGKPRRCSSSFFTEERINLERRRNVIR-YLQQGKCGDQTTVKDIPSEIPIQLVVG 270
+++ +G+PRR S F EER L++ R +R + + + G + + +P+++ L VG
Sbjct: 671 VIKSSLGRPRRFSERFLHEEREKLKQYRESVRKHYTELRTGAR---EGLPTDLARPLAVG 727
Query: 271 TKVTA---RVRSPQDGLFTGVVDAYDTSNNTYRITFDRQGLGTQSIPDYEVLSND----T 323
+V A + R DG V +N + FD LG + + D + + +
Sbjct: 728 NRVIAIHPKTREIHDGKILTV------DHNKCNVLFD--DLGVELVMDIDCMPLNPLEYM 779
Query: 324 PETLNRQ 330
PE L RQ
Sbjct: 780 PEGLRRQ 786
>sp|Q6A331|ALY1_ARATH Protein ALWAYS EARLY 1 OS=Arabidopsis thaliana GN=ALY1 PE=2 SV=2
Length = 971
Score = 70.9 bits (172), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 82/188 (43%), Gaps = 30/188 (15%)
Query: 156 KLRNLLKLPKAYRFVCYEFFYSNIDRPLFNDNDFITCMKE----SFPQLKKYVFSRTEWS 211
KL N L P R+ YE+FYS ID P F +F + P+L +R EWS
Sbjct: 540 KLSNCLSYPLVRRWCIYEWFYSAIDYPWFAKMEFTDYLNHVGLGHAPRL-----TRVEWS 594
Query: 212 MVRRMVGKPRRCSSSFFTEERINLERRRNVIR--YLQQGKCGDQTTVKDIPSEIPIQLVV 269
+++ +G+PRR S F +ER L+ R +R Y + C D+ L V
Sbjct: 595 VIKSSLGRPRRLSQRFLQDERDKLQEYRESVRKHYTELRGCATGVLHTDLARP----LSV 650
Query: 270 GTKVTA---RVRSPQDGLFTGVVDAYDTSNNTYRITFDRQGLGTQSIPDYEVLSND---- 322
G +V A + R +DG V +N + FD LG + + D + + +
Sbjct: 651 GNRVIAIHPKTREIRDGKILTV------DHNKCNVLFDE--LGVELVMDIDCMPLNPLEY 702
Query: 323 TPETLNRQ 330
PE L RQ
Sbjct: 703 MPEGLRRQ 710
>sp|Q6A332|ALY3_ARATH Protein ALWAYS EARLY 3 OS=Arabidopsis thaliana GN=ALY3 PE=1 SV=1
Length = 1132
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 85/350 (24%), Positives = 137/350 (39%), Gaps = 93/350 (26%)
Query: 165 KAYRFVCYEFFYSNIDRPLFNDNDFITCMKE----SFPQLKKYVFSRTEWSMVRRMVGKP 220
+A R+ +E+FYS ID P F +F+ + P+L +R EW ++R +GKP
Sbjct: 598 RARRWCIFEWFYSAIDYPWFARQEFVEYLDHVGLGHVPRL-----TRVEWGVIRSSLGKP 652
Query: 221 RRCSSSFFTEERINLERRRNVIRYLQQGKCGDQTTVKDIPSEIPIQLVVGTKVTARV--- 277
RR S F EE+ L R+ +R K D+ + +P+ L V+ RV
Sbjct: 653 RRFSEQFLKEEKEKLYLYRDSVR-----KHYDELNT-GMREGLPMDLARPLNVSQRVICL 706
Query: 278 ----RSPQDGLFTGVVDAYDTSNNTYRITFDRQGLGTQSIPDYEVLS----NDTPETLNR 329
R DG + + YRI FD LG + + D E + + P +L R
Sbjct: 707 HPKSREIHDG------NVLTVDHCRYRIQFDNPELGVEFVKDTECMPLNPLENMPASLAR 760
Query: 330 ----------------------QSFLQMF---------FASVPNDHTNRTGKPE------ 352
+S L+ + S PN + + + K E
Sbjct: 761 HYAFSNYHIQNPIEEKMHERAKESMLEGYPKLSCETGHLLSSPNYNISNSLKQEKVDISS 820
Query: 353 --PEAMDANHIDKELEGML-------------GEYPVELLEQVVRFKKLLKFKKTEVYQI 397
P+A D +D+ L L E V+ L ++ R L K+ + ++
Sbjct: 821 SNPQAQDG--VDEALALQLFNSQPSSIGQIQAREADVQALSELTR---ALDKKELVLREL 875
Query: 398 RDMNSEAERRQLYGE----PYDRAFQKKYAGHILRLEKINKDVNTVLASL 443
+ MN E Q G +F+K+YA + +L +IN+ V+ L L
Sbjct: 876 KCMNDEVVESQKDGHNNALKDSESFKKQYAAVLFQLSEINEQVSLALLGL 925
>sp|O34478|YCCF_BACSU Uncharacterized protein YccF OS=Bacillus subtilis (strain 168)
GN=yccF PE=4 SV=1
Length = 358
Score = 33.1 bits (74), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 41/88 (46%), Gaps = 8/88 (9%)
Query: 315 DYEVLSNDTPETLNRQSFLQMFFASVPN-DHTNRTGKPEPEAMD-ANHIDKEL-----EG 367
D V TPE +Q F + FA + D + K E ++ AN ++KE EG
Sbjct: 206 DAAVKDGKTPEDFMKQEFNNVLFALLAEKDEEPQAEKAEVSTVEWANDLEKETAAAIEEG 265
Query: 368 MLGE-YPVELLEQVVRFKKLLKFKKTEV 394
M GE YP EL+ V+ K KK+ V
Sbjct: 266 MSGEEYPTELIPAVIDIWKTFCEKKSPV 293
>sp|Q69Z98|BRSK2_MOUSE Serine/threonine-protein kinase BRSK2 OS=Mus musculus GN=Brsk2 PE=1
SV=2
Length = 735
Score = 32.7 bits (73), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 53/110 (48%), Gaps = 4/110 (3%)
Query: 431 KINKDVNTVLASLSVNLKKLSVTSENMSSQLYALSPSDLQQETYIAAQEIVDTVNKKNGN 490
++N N+ L S + +KL V + S L S +L ++++ ++ ++
Sbjct: 479 RLNSIKNSFLGSPRFHRRKLQVPTPEEMSNLTPESSPELAKKSWFG--NFINLEKEEQIF 536
Query: 491 KIVDDQPVVSLITDLTALVLQIKTLSHS--SRSAYEVEVLNKTMSDIYKK 538
++ D+P+ S+ D+ L I +LSHS S++++ E +++K
Sbjct: 537 VVIKDKPLSSIKADIVHAFLSIPSLSHSVISQTSFRAEYKATGGPAVFQK 586
>sp|Q8IWQ3|BRSK2_HUMAN Serine/threonine-protein kinase BRSK2 OS=Homo sapiens GN=BRSK2 PE=1
SV=3
Length = 736
Score = 32.3 bits (72), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 54/117 (46%), Gaps = 4/117 (3%)
Query: 424 GHILRLEKINKDVNTVLASLSVNLKKLSVTSENMSSQLYALSPSDLQQETYIAAQEIVDT 483
G + ++N N+ L S + +KL V + S L S +L ++++ +
Sbjct: 471 GGVPWRARLNSIKNSFLGSPRFHRRKLQVPTPEEMSNLTPESSPELAKKSWFG--NFISL 528
Query: 484 VNKKNGNKIVDDQPVVSLITDLTALVLQIKTLSHS--SRSAYEVEVLNKTMSDIYKK 538
++ ++ D+P+ S+ D+ L I +LSHS S++++ E +++K
Sbjct: 529 EKEEQIFVVIKDKPLSSIKADIVHAFLSIPSLSHSVISQTSFRAEYKATGGPAVFQK 585
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.131 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 215,267,971
Number of Sequences: 539616
Number of extensions: 9297839
Number of successful extensions: 24663
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 90
Number of HSP's that attempted gapping in prelim test: 24471
Number of HSP's gapped (non-prelim): 251
length of query: 583
length of database: 191,569,459
effective HSP length: 123
effective length of query: 460
effective length of database: 125,196,691
effective search space: 57590477860
effective search space used: 57590477860
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 64 (29.3 bits)