RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9276
(583 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 65.8 bits (160), Expect = 3e-11
Identities = 58/330 (17%), Positives = 102/330 (30%), Gaps = 123/330 (37%)
Query: 290 DAYDTSNNTYRITFDR------QGLGTQSIPDYEVLSNDTPETLN---------RQSFLQ 334
D Y TS + ++R G SI D V++N T++ R+++
Sbjct: 1634 DLYKTSK-AAQDVWNRADNHFKDTYG-FSILDI-VINNPVNLTIHFGGEKGKRIRENYSA 1690
Query: 335 MFFASVPNDHTNRTGKPEPEAMDANHIDKELEGMLGEYPVELLEQVVRFKKLLKFKKTEV 394
M F ++ D +T K E I++ LL T+
Sbjct: 1691 MIFETIV-DGKLKTEKIFKE------INEHSTSYTFRSEKGLLSA------------TQF 1731
Query: 395 YQ----------IRDMNSEAERRQLYGEPYDRAFQKKYAGHILRLEKINKDVNTVLASL- 443
Q D+ S+ P D F AGH SL
Sbjct: 1732 TQPALTLMEKAAFEDLKSKG------LIPADATF----AGH----------------SLG 1765
Query: 444 --SVNLKKLSVTSENMSSQLYALSPSDLQQETYI---AAQEIV--DTVNKKNGNKI-VDD 495
+ L+ ++ +S L + + Q V D + + N I ++
Sbjct: 1766 EYAA----LASLAD-------VMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINP 1814
Query: 496 QPVVSLITD--LTALVLQIKTLSHSSRSAYEVEVLNKTMSDIYKKLSPNNQSVFENCIGV 553
V + + L +V ++ R+ + VE++N Y N
Sbjct: 1815 GRVAASFSQEALQYVVERV-----GKRTGWLVEIVN------Y------------NVEN- 1850
Query: 554 HMEQIKAALAGERGSLATLTKPVSQNTFNK 583
+Q AG+ +L T+T ++ K
Sbjct: 1851 --QQY--VAAGDLRALDTVTNVLNFIKLQK 1876
Score = 56.6 bits (136), Expect = 2e-08
Identities = 64/355 (18%), Positives = 113/355 (31%), Gaps = 128/355 (36%)
Query: 151 QRVGMKLRNLLKLPKAYRFVCYEFFYSNID--RPLFNDNDFITCMKESFPQLKKYVFSRT 208
Q GM + Y + ++N D K+ Y FS
Sbjct: 1627 QEQGM---------------GMD-LYKTSKAAQDVWNRAD--NHFKD------TYGFSIL 1662
Query: 209 EWSMVRRMVGKPRRCSSSFFTE--ERINLERRRNVIRYLQQGKCGDQTTVKDIPSEIPIQ 266
+ +V P + F E +RI R N + + + + I EI
Sbjct: 1663 D--IVI---NNPVNLTIHFGGEKGKRI----RENYSAMIFETIVDGKLKTEKIFKEINEH 1713
Query: 267 LVVGTKVTARVRSPQDGL----FT------------------GVVDAYDT----SNNTYR 300
T T RS + L FT G++ A T S
Sbjct: 1714 S---TSYT--FRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHS----- 1763
Query: 301 ITFDRQGLGTQSIPDY-------EVLS-NDTPETLN-RQSFLQMFFASVPNDHTNRTGKP 351
LG +Y +V+S E + R +Q +VP D R+
Sbjct: 1764 -------LG-----EYAALASLADVMSIESLVEVVFYRGMTMQ---VAVPRDELGRSN-- 1806
Query: 352 EPEAMDANHIDKELEGMLGEYPVELLEQVVRFKKLLKFKKTEVYQIRDMNSEAERRQLYG 411
M A + + + + E L+ VV +++ K + + +I + N E
Sbjct: 1807 --YGMIAINPGR----VAASFSQEALQYVV--ERVGK-RTGWLVEIVNYNVE-------N 1850
Query: 412 EPYDRAFQKKY--AGHILRLEKINKDVNTVLASLSVNLKKL--SVTSENMSSQLY 462
+ Q Y AG + L+ + +N + +++ +L S++ E + L+
Sbjct: 1851 Q------Q--YVAAGDLRALDTVTNVLNF-IKLQKIDIIELQKSLSLEEVEGHLF 1896
Score = 55.8 bits (134), Expect = 3e-08
Identities = 61/350 (17%), Positives = 102/350 (29%), Gaps = 156/350 (44%)
Query: 255 TVKDIPSEIPIQLVVGTKVTARVRSPQDGLFTGVVDAYDTSNNTYRITFDRQGLGTQSIP 314
++ DI P+ L + F G +G + I
Sbjct: 1660 SILDIVINNPVNLTI--------------HFGG-----------------EKG---KRI- 1684
Query: 315 DYEVLSNDTPETLNRQSFLQMFFASVPNDHTNRTGKPEPEAMDANHIDKELEGMLGEYPV 374
R+++ M F ++ D +T K E I++
Sbjct: 1685 --------------RENYSAMIFETIV-DGKLKTEKIFKE------INEHSTSYTFRSEK 1723
Query: 375 ELLEQVVRFKKLLKFKKTEVYQ----------IRDMNSEAERRQLYGEPYDRAFQKKYAG 424
LL T+ Q D+ S+ P D F AG
Sbjct: 1724 GLLSA------------TQFTQPALTLMEKAAFEDLKSKG------LIPADATF----AG 1761
Query: 425 H-------------ILRLEKINKD-VNTV-----LASLSVNLKKLSVTSENMSSQLYALS 465
H ++ +E V V ++V +L ++ M A++
Sbjct: 1762 HSLGEYAALASLADVMSIE----SLVEVVFYRGMTMQVAVPRDELGRSNYGM----IAIN 1813
Query: 466 PS----DLQQETYIAAQEIVDTVNKKNGNK--IVDD-----QPVVSLITDLTALVLQIKT 514
P QE A Q +V+ V K+ G IV+ Q V + DL AL T
Sbjct: 1814 PGRVAASFSQE---ALQYVVERVGKRTGWLVEIVNYNVENQQYVAA--GDLRAL----DT 1864
Query: 515 LSHSSRSAYEVEVLN--KTMSDIYKKLSPNNQSVFENCIGVHMEQIKAAL 562
++ VLN K I + +S + +E+++ L
Sbjct: 1865 VT---------NVLNFIKLQK-I--DIIELQKS-------LSLEEVEGHL 1895
Score = 47.7 bits (113), Expect = 9e-06
Identities = 57/338 (16%), Positives = 98/338 (28%), Gaps = 137/338 (40%)
Query: 306 QGLGTQSIPDYEVLSNDTPETLNRQSFL----QMFFASVPNDHTNRTGKPEPEAMDANHI 361
T+ + LS+ + E L F AS + N+ PE +
Sbjct: 2 DAYSTRPL----TLSHGSLEH----VLLVPTASFFIASQLQEQFNKI---LPEPTEGFAA 50
Query: 362 DKELEGMLGEYPVELLEQVVRFKKLLKFKKTEVYQIRDMNSEAERRQLYGEPYDRAFQKK 421
D E P EL V +F L + V + + + + Q+ F+
Sbjct: 51 DDEPTT-----PAEL---VGKF---LGY----VSSLVEPSKVGQFDQVLNLCLT-EFENC 94
Query: 422 YAGHILRLEKINKDVNTVLASLSVN-----LKKLSV--------------TSENMSS--- 459
Y L D++ + A L +K + + +S
Sbjct: 95 Y----LE----GNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALF 146
Query: 460 --------QLYAL-----SPSD----LQQ--ETY---------IAA---QEIVDTVNKKN 488
QL A+ + D L+ +TY +A E++ T
Sbjct: 147 RAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAE 206
Query: 489 -----GNKIV------DDQP--------VVS--LITDLTALVLQIKTLSHSSRSAYEV-- 525
G I+ + P +S LI V+Q L+H Y V
Sbjct: 207 KVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIG-----VIQ---LAH-----YVVTA 253
Query: 526 EVLNKTMSDIYKKLSPNNQSVFENCIGVHMEQIKAALA 563
++L T ++ L H + + A+A
Sbjct: 254 KLLGFTPGELRSYLK---------GATGHSQGLVTAVA 282
Score = 40.8 bits (95), Expect = 0.001
Identities = 70/448 (15%), Positives = 128/448 (28%), Gaps = 161/448 (35%)
Query: 225 SSFFTEERINLERRRNVIR-YLQQGKCGDQTTVKDIPSEIPIQLVVGTKVTARVRSPQDG 283
+ E L + + +I+ Y+ + K S A R+ +G
Sbjct: 106 AKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNS-------------ALFRAVGEG 152
Query: 284 ---LFT-----GVVDAY-----DTSNNTYR------ITFDRQGLGT--QSIPDYEVLSND 322
L G D Y D TY I F + L ++ D E +
Sbjct: 153 NAQLVAIFGGQGNTDDYFEELRDLYQ-TYHVLVGDLIKFSAETLSELIRTTLDAEKV--- 208
Query: 323 TPETLNRQSFLQMFFASVPNDHTNRTGKPEPEAMDANHIDKELEGMLGEYPVEL----LE 378
+ LN +L+ N + P+ + + + P+ +
Sbjct: 209 FTQGLNILEWLE-----------NPSNTPDKDYLLS-------------IPISCPLIGVI 244
Query: 379 QVVRFKKLLKFKKTEVYQIRDMNSEAERRQLYG--------------------EPYDRAF 418
Q+ + K + R L G E + +
Sbjct: 245 QLAHYVVTAK--------LLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSV 296
Query: 419 QK--KYAGHI-LRLEKINKDVNTVLASLSVNLKKLSVT-SENMSSQLYALSPSDLQQETY 474
+K I +R + SL ++ + S+ +E + S LS S+L QE
Sbjct: 297 RKAITVLFFIGVRCYEA-----YPNTSLPPSILEDSLENNEGVPS--PMLSISNLTQE-- 347
Query: 475 IAAQEIVDTVNKKNGNKIVDDQPVVSLI------------TDLTALVLQIKTLS------ 516
++ D VNK N + Q +SL+ L L L ++
Sbjct: 348 ----QVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLD 403
Query: 517 -----HSSR----------------SAYEVEVLNKTMSDIYKK-LSPNNQS----VFENC 550
S R S V + D+ K +S N + V++
Sbjct: 404 QSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTF 463
Query: 551 IGVHMEQIKAALAGERGSLAT--LTKPV 576
G + + +++ + + PV
Sbjct: 464 DGSDLRVLSGSIS---ERIVDCIIRLPV 488
Score = 38.9 bits (90), Expect = 0.005
Identities = 25/134 (18%), Positives = 42/134 (31%), Gaps = 36/134 (26%)
Query: 454 SENMSSQLYALSPSDLQQETYIAAQEIVDTVNKKNGN-------KIVDDQPVVSLITDLT 506
+ M LY S AAQ++ + + + IV + P +LT
Sbjct: 1628 EQGMGMDLYKTSK---------AAQDVWNRADNHFKDTYGFSILDIVINNP-----VNLT 1673
Query: 507 ALVLQIKTLSHSSRSAYEVEVLNKTMSDIYKKLSPNNQSVFENCIGVHMEQIKAALAGER 566
K R Y ++ +T+ D K + + E+ E+
Sbjct: 1674 IHFGGEK--GKRIRENYS-AMIFETIVDGKLKTEKIFKEINEHSTSYTFR-------SEK 1723
Query: 567 GSLATLTKPVSQNT 580
G L + T Q T
Sbjct: 1724 GLL-SAT----QFT 1732
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.9 bits (131), Expect = 6e-08
Identities = 75/477 (15%), Positives = 125/477 (26%), Gaps = 165/477 (34%)
Query: 116 LQSTLTETPEKFNDSKLKGSKKSRVR------CSSPDRNLGQRVGMKLR-NLLKLPKAYR 168
+S L++ E+ + + S S + + + V LR N L +
Sbjct: 42 PKSILSK--EEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIK 99
Query: 169 FVC------YEFFYSNIDRPLFNDNDFITCMKESFPQLKKYVFSRTEWSMVRRMVGKPRR 222
+ DR L+NDN + F KY SR + K R+
Sbjct: 100 TEQRQPSMMTRMYIEQRDR-LYNDN-------QVFA---KYNVSRLQ------PYLKLRQ 142
Query: 223 CSSSFFTEERINLERRRNVIRYLQQGKCGDQTTVKDIPSEIPIQLVVGTKVTARVRSPQD 282
L +NV+ G G D+ +Q + K+
Sbjct: 143 ALL--------ELRPAKNVLIDGVLG-SGKTWVALDVCLSYKVQCKMDFKI--------- 184
Query: 283 GLFTGVVDAYDTSNNTYRITFDRQGLGTQSIPDYEVLSNDTPETLNRQSFLQMFFASVPN 342
+ + ++PET+ LQ +
Sbjct: 185 ----------------FWLNLKNC---------------NSPETVLEM--LQKLLYQIDP 211
Query: 343 DHTNRTGKPEPEAMDANHIDKELEGMLGE--YPVELLEQV---VRFKKLLK-FK---KTE 393
+ T+R+ + + I EL +L Y LL V V+ K F K
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL--VLLNVQNAKAWNAFNLSCKIL 269
Query: 394 V----YQIRDMNSEAERRQLYGEPYDRAFQKKYAGHILRLEKINKDVNTVLASLSVNLKK 449
+ Q+ D S A + + + S+ LK
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE-------------------VKSLLLKY 310
Query: 450 LSVTSENMSSQLYALSPSDLQQETYIAAQEIVDTVNKKNGNKIVDDQP-VVSLITDLTAL 508
L P DL +E V T N P +S+I A
Sbjct: 311 LDC------------RPQDLPRE--------VLTTN-----------PRRLSII----AE 335
Query: 509 VLQ-----IKTLSHSSRSAYEVEVLNKTMSDIYKKLSPNN-QSVFENCIGVHMEQIK 559
++ H + L + L P + +F+ V
Sbjct: 336 SIRDGLATWDNWKH-----VNCDKLTTIIESSLNVLEPAEYRKMFDRL-SVFPPSAH 386
Score = 34.1 bits (77), Expect = 0.14
Identities = 27/238 (11%), Positives = 71/238 (29%), Gaps = 45/238 (18%)
Query: 8 QHQEIIE---EGLREEEV-------GLEPDLSKVKEEVIIKM---EPEDDVDPEAESLNR 54
+ IIE L E + P + + ++ + + DV L++
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK 413
Query: 55 RGMPRRTIKKNRY----IFDDMFNAGATSPRVNKT-PNKTPTKKATPNSKKKKTPTSLVK 109
+ + K++ I+ ++ ++++ + K +
Sbjct: 414 YSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF 473
Query: 110 FS------SSSKLQSTLTETPEKFND-----SKLKGSKKSRVRCSSPDRNLGQ------- 151
+S + + +T F D K++ + S L Q
Sbjct: 474 YSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY 533
Query: 152 ------RVGMKLRNLLKLPKAYRFVCYEFFYSNIDR-PLFNDNDFITCMKESFPQLKK 202
+ + +L Y+++ R L +++ I +E+ Q+++
Sbjct: 534 ICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAI--FEEAHKQVQR 589
>3uws_A Hypothetical protein; clostripain family protein, peptidase_C11,
structural genomi center for structural genomics, JCSG;
HET: MSE; 1.70A {Parabacteroides merdae}
Length = 126
Score = 28.0 bits (62), Expect = 4.3
Identities = 9/57 (15%), Positives = 20/57 (35%), Gaps = 2/57 (3%)
Query: 288 VVDAYDTSNNTYRITFDRQGLGTQSIPDYEVLSNDTPETLNRQSFLQMFFASVPNDH 344
+ RI + + + DYE ++ P+ + +S + + P D
Sbjct: 50 YYAPAGSPPELLRIKEENGVVKKIHLKDYEKQNSADPDVM--RSVIGEVVSQYPADS 104
>2h4p_A MENT, heterochromatin-associated protein MENT; serine protease
inhibitor, serpin, hydrolase inhibitor; 1.70A {Gallus
gallus} PDB: 2h4q_A
Length = 394
Score = 28.5 bits (64), Expect = 7.2
Identities = 20/140 (14%), Positives = 51/140 (36%), Gaps = 10/140 (7%)
Query: 377 LEQVVRFKKLLKFKKTEVYQIRDMNSEAERRQLYGEPYDRAFQKKYAGHILRLEKINKDV 436
+ +V+ F + ++ + + V + + R E + + + K +
Sbjct: 79 MAEVLHFTEAVRAESSSVARPSRGRPKRRRMDPEHEQAE-NIHSGFKELLTAFNKPRNNY 137
Query: 437 NTVLASLSVNLKKLSVTSE--NMSSQLY--ALSPSDLQQETYIAAQEIVDTVNKKNGNKI 492
+ A+ K ++ +S + Y + + + +EI V K+ +KI
Sbjct: 138 SLRSANRIYVEKTYALLPTYLQLSKKYYKAEPQKVNFKTAPEQSRKEINTWVEKQTESKI 197
Query: 493 VDDQPVVSL--ITDLTALVL 510
+ ++S + T L+L
Sbjct: 198 KN---LLSSDDVKATTRLIL 214
>2cp5_A Restin; microtubule binding, cytoskeleton associated protein,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.34.10.1
Length = 141
Score = 27.2 bits (60), Expect = 7.7
Identities = 15/74 (20%), Positives = 24/74 (32%)
Query: 77 ATSPRVNKTPNKTPTKKATPNSKKKKTPTSLVKFSSSSKLQSTLTETPEKFNDSKLKGSK 136
+ + + K PTK P S KTPT++V + + TP +
Sbjct: 6 SGMSMLKPSGLKAPTKILKPGSTALKTPTAVVAPVEKTISSEKASSTPSSETQEEFVDDF 65
Query: 137 KSRVRCSSPDRNLG 150
+ R G
Sbjct: 66 RVGERVWVNGNKPG 79
>1jk0_A RNR Y2, ribonucleoside-diphosphate reductase small chain 1;
ribonucleotide reductase, oxidoreductase; 2.80A
{Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1smq_A
Length = 419
Score = 28.0 bits (62), Expect = 8.6
Identities = 17/105 (16%), Positives = 28/105 (26%), Gaps = 3/105 (2%)
Query: 77 ATSPRVNKTPNKTPTKKATPNSKKKKTPTSLVKFSSSSKLQSTLTETPEKFNDSKLKGSK 136
PR + P +TP+K A + S + + KL
Sbjct: 13 GLVPRGSHMPKETPSKAAADALSDLEIKDSKSNLNKELETLREENRVKSDMLKEKLSKDA 72
Query: 137 KSRVRCSSPDR--NLGQRVGMKLRNLLKLPKAYRFVCYEFFYSNI 179
++ + + K LL R V + Y I
Sbjct: 73 ENHKAYLKSHQVHRHKLKEMEKEEPLLN-EDKERTVLFPIKYHEI 116
>2cxi_A Phenylalanyl-tRNA synthetase beta chain; aminoacyl-tRNA synthetase,
ligase, structural genomics; HET: MSE; 1.94A {Pyrococcus
horikoshii}
Length = 348
Score = 28.0 bits (62), Expect = 9.0
Identities = 13/93 (13%), Positives = 35/93 (37%), Gaps = 15/93 (16%)
Query: 470 QQETYIAAQEIVDTVNKKNGNKIVDDQPVVSLITDLTALVLQIKTLSHSSRSAYEVEVLN 529
+E + + + ++ D+ L+ D VL + + +S +
Sbjct: 170 YKEEMTLEEILEKHEKGREYGHLIKDKQFYPLLIDSEGNVLSMPPIINSEFT-------- 221
Query: 530 KTMSDIYKKLSPNNQSVFENCIGVHMEQIKAAL 562
+++ + ++VF + G +E++ AL
Sbjct: 222 -------GRVTTDTKNVFIDVTGWKLEKVMLAL 247
>1ub4_A MAZF protein; toxin, antidote, programmed cell death,
post-segregation, AD module, structural genomics, PSI;
1.70A {Escherichia coli} SCOP: b.34.6.2 PDB: 3nfc_A
Length = 110
Score = 26.6 bits (59), Expect = 9.4
Identities = 9/44 (20%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 497 PVVSLITDLTALVLQIKTLSHSSRSAYEVEVLNK-TMSDIYKKL 539
+ D AL Q+K+++ +R A + + + I K+
Sbjct: 62 VLSGQERDGVALADQVKSIAWRARGATKKGTVAPEELQLIKAKI 105
>1sra_A Sparc; extracellular matrix protein, calcium-binding protein; 2.00A
{Homo sapiens} SCOP: a.39.1.3
Length = 151
Score = 27.1 bits (59), Expect = 9.8
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 206 SRTEWSMVRRMVGKPRRCSSSFF 228
S TE + +R + C++ FF
Sbjct: 96 SHTELAPLRAPLIPMEHCTTRFF 118
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.131 0.363
Gapped
Lambda K H
0.267 0.0590 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,538,997
Number of extensions: 516785
Number of successful extensions: 701
Number of sequences better than 10.0: 1
Number of HSP's gapped: 697
Number of HSP's successfully gapped: 21
Length of query: 583
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 484
Effective length of database: 3,937,614
Effective search space: 1905805176
Effective search space used: 1905805176
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.2 bits)