RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9276
         (583 letters)



>d1toaa_ c.92.2.2 (A:) Periplasmic zinc binding protein TroA
           {Treponema pallidum [TaxId: 160]}
          Length = 277

 Score = 33.0 bits (74), Expect = 0.077
 Identities = 17/114 (14%), Positives = 32/114 (28%)

Query: 186 DNDFITCMKESFPQLKKYVFSRTEWSMVRRMVGKPRRCSSSFFTEERINLERRRNVIRYL 245
           D       +    + +  V +   +    R  G   +      T    +    + +  ++
Sbjct: 147 DAYVRRKAQSLPAERRVLVTAHDAFGYFSRAYGFEVKGLQGVSTASEASAHDMQELAAFI 206

Query: 246 QQGKCGDQTTVKDIPSEIPIQLVVGTKVTARVRSPQDGLFTGVVDAYDTSNNTY 299
            Q K         IP +    L    +    V      LF+  +    TS  TY
Sbjct: 207 AQRKLPAIFIESSIPHKNVEALRDAVQARGHVVQIGGELFSDAMGDAGTSEGTY 260


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.131    0.363 

Gapped
Lambda     K      H
   0.267   0.0639    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,070,552
Number of extensions: 99948
Number of successful extensions: 147
Number of sequences better than 10.0: 1
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 3
Length of query: 583
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 493
Effective length of database: 1,171,896
Effective search space: 577744728
Effective search space used: 577744728
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.2 bits)