Query psy9277
Match_columns 178
No_of_seqs 169 out of 1417
Neff 9.1
Searched_HMMs 29240
Date Fri Aug 16 23:21:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9277.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9277hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fe2_A Probable ATP-dependent 100.0 6.3E-32 2.1E-36 206.9 17.8 153 20-172 17-174 (242)
2 2db3_A ATP-dependent RNA helic 100.0 3.3E-31 1.1E-35 218.7 19.4 150 22-171 46-200 (434)
3 3ber_A Probable ATP-dependent 100.0 1.5E-30 5E-35 200.4 18.3 142 27-168 38-179 (249)
4 3bor_A Human initiation factor 100.0 8.8E-31 3E-35 200.0 16.0 151 21-171 19-170 (237)
5 1vec_A ATP-dependent RNA helic 100.0 3.5E-30 1.2E-34 192.0 18.8 140 32-171 3-143 (206)
6 3fmo_B ATP-dependent RNA helic 100.0 7.6E-31 2.6E-35 207.2 15.6 139 27-168 87-228 (300)
7 1q0u_A Bstdead; DEAD protein, 100.0 1.4E-30 4.7E-35 196.5 15.3 142 30-171 2-147 (219)
8 3iuy_A Probable ATP-dependent 100.0 3.1E-30 1.1E-34 195.5 16.1 149 23-172 10-165 (228)
9 1wrb_A DJVLGB; RNA helicase, D 100.0 2.4E-30 8.2E-35 199.1 15.2 145 28-172 19-172 (253)
10 2oxc_A Probable ATP-dependent 100.0 1.1E-29 3.9E-34 193.0 18.5 144 27-171 19-163 (230)
11 2j0s_A ATP-dependent RNA helic 100.0 1.3E-29 4.3E-34 206.6 18.5 158 14-171 19-176 (410)
12 1qde_A EIF4A, translation init 100.0 1.5E-29 5.1E-34 191.0 17.3 144 27-171 9-152 (224)
13 2i4i_A ATP-dependent RNA helic 100.0 2E-29 6.9E-34 205.5 19.3 151 21-171 4-172 (417)
14 2pl3_A Probable ATP-dependent 100.0 9.2E-29 3.1E-33 188.3 19.1 140 28-168 21-164 (236)
15 3ly5_A ATP-dependent RNA helic 100.0 3.6E-29 1.2E-33 194.0 17.1 140 30-169 50-195 (262)
16 1t6n_A Probable ATP-dependent 100.0 6.3E-29 2.2E-33 187.2 17.9 144 28-171 10-155 (220)
17 3dkp_A Probable ATP-dependent 100.0 3.7E-29 1.3E-33 191.5 13.3 150 20-169 13-168 (245)
18 2gxq_A Heat resistant RNA depe 100.0 2.6E-28 8.9E-33 181.9 17.0 137 33-171 2-141 (207)
19 3eiq_A Eukaryotic initiation f 100.0 3.2E-27 1.1E-31 192.1 18.2 153 20-172 28-181 (414)
20 1s2m_A Putative ATP-dependent 99.9 9.4E-27 3.2E-31 188.9 18.6 142 30-171 19-160 (400)
21 1xti_A Probable ATP-dependent 99.9 2.9E-26 9.9E-31 185.2 16.8 141 31-171 7-149 (391)
22 1fuu_A Yeast initiation factor 99.9 2.2E-26 7.4E-31 185.9 16.0 142 29-171 18-159 (394)
23 3fht_A ATP-dependent RNA helic 99.9 9.2E-26 3.1E-30 183.3 16.6 143 23-168 16-161 (412)
24 3fmp_B ATP-dependent RNA helic 99.9 5.6E-26 1.9E-30 189.1 14.7 138 29-169 89-229 (479)
25 3pey_A ATP-dependent RNA helic 99.9 1.3E-25 4.5E-30 181.1 15.9 138 30-171 3-142 (395)
26 1hv8_A Putative ATP-dependent 99.9 1.1E-24 3.6E-29 174.2 17.3 139 31-171 5-144 (367)
27 3sqw_A ATP-dependent RNA helic 99.9 4.2E-25 1.4E-29 188.0 15.5 138 30-167 15-167 (579)
28 3i5x_A ATP-dependent RNA helic 99.9 7E-25 2.4E-29 185.6 15.4 138 31-168 67-219 (563)
29 2z0m_A 337AA long hypothetical 99.9 8.7E-24 3E-28 167.2 18.2 126 39-171 1-126 (337)
30 3oiy_A Reverse gyrase helicase 99.9 2.8E-23 9.5E-28 169.7 12.2 121 42-167 9-134 (414)
31 3fho_A ATP-dependent RNA helic 99.9 5.2E-23 1.8E-27 172.8 9.3 140 29-172 116-257 (508)
32 2ykg_A Probable ATP-dependent 99.9 2.4E-22 8.4E-27 173.7 13.0 127 44-170 3-131 (696)
33 2va8_A SSO2462, SKI2-type heli 99.9 2.5E-22 8.7E-27 174.5 13.1 134 30-169 6-140 (715)
34 2zj8_A DNA helicase, putative 99.9 1.8E-22 6.1E-27 175.7 11.8 133 32-170 1-134 (720)
35 4a2p_A RIG-I, retinoic acid in 99.9 5E-22 1.7E-26 167.0 12.7 120 51-170 4-125 (556)
36 3tbk_A RIG-I helicase domain; 99.9 9.2E-22 3.1E-26 165.1 12.6 117 54-170 4-122 (555)
37 2v1x_A ATP-dependent DNA helic 99.9 1.8E-21 6E-26 166.2 13.7 119 34-162 23-148 (591)
38 1oyw_A RECQ helicase, ATP-depe 99.9 2E-21 6.9E-26 163.7 13.5 121 32-162 2-127 (523)
39 4a2q_A RIG-I, retinoic acid in 99.9 2.3E-21 7.7E-26 170.5 14.0 122 49-170 243-366 (797)
40 2p6r_A Afuhel308 helicase; pro 99.9 1.7E-22 5.7E-27 175.4 6.7 130 33-169 2-133 (702)
41 4ddu_A Reverse gyrase; topoiso 99.9 3.5E-21 1.2E-25 173.8 14.5 115 48-167 73-191 (1104)
42 4f92_B U5 small nuclear ribonu 99.9 5.3E-22 1.8E-26 184.9 8.8 124 39-167 66-198 (1724)
43 1tf5_A Preprotein translocase 99.9 3.9E-21 1.3E-25 167.1 12.4 112 49-168 79-191 (844)
44 4f92_B U5 small nuclear ribonu 99.8 1.5E-20 5E-25 175.3 15.3 127 39-169 911-1039(1724)
45 1gku_B Reverse gyrase, TOP-RG; 99.8 9.8E-21 3.4E-25 170.5 12.0 117 45-167 48-172 (1054)
46 4a2w_A RIG-I, retinoic acid in 99.8 1.7E-20 5.9E-25 167.3 11.3 122 49-170 243-366 (936)
47 2fsf_A Preprotein translocase 99.8 2.1E-20 7E-25 162.5 10.5 113 49-169 70-183 (853)
48 3b6e_A Interferon-induced heli 99.8 2.6E-20 9E-25 138.9 8.2 119 50-169 29-151 (216)
49 3l9o_A ATP-dependent RNA helic 99.8 5.4E-20 1.8E-24 166.2 11.6 126 31-170 161-286 (1108)
50 1gm5_A RECG; helicase, replica 99.8 3.7E-19 1.3E-23 155.7 13.6 118 42-163 356-484 (780)
51 1nkt_A Preprotein translocase 99.8 2.5E-19 8.5E-24 156.2 12.2 113 48-168 106-219 (922)
52 2ipc_A Preprotein translocase 99.8 4.5E-19 1.6E-23 154.5 12.9 114 48-169 74-188 (997)
53 4gl2_A Interferon-induced heli 99.8 3.6E-19 1.2E-23 154.0 6.1 112 54-166 7-122 (699)
54 2xgj_A ATP-dependent RNA helic 99.7 1.5E-17 5E-22 149.2 13.7 108 48-170 81-188 (1010)
55 1wp9_A ATP-dependent RNA helic 99.7 5.8E-17 2E-21 132.9 14.5 114 54-171 9-122 (494)
56 4a4z_A Antiviral helicase SKI2 99.7 3.7E-17 1.3E-21 146.5 12.4 109 49-170 35-143 (997)
57 1rif_A DAR protein, DNA helica 99.7 5.5E-17 1.9E-21 126.4 9.8 105 54-163 113-217 (282)
58 2oca_A DAR protein, ATP-depend 99.7 4.9E-17 1.7E-21 136.0 9.8 106 53-163 112-217 (510)
59 3llm_A ATP-dependent RNA helic 99.7 1.4E-16 4.8E-21 121.1 10.0 123 40-167 47-172 (235)
60 2eyq_A TRCF, transcription-rep 99.7 1.1E-15 3.6E-20 138.9 16.6 122 37-162 586-718 (1151)
61 2fwr_A DNA repair protein RAD2 99.6 1.9E-15 6.6E-20 125.2 11.7 94 54-166 93-187 (472)
62 2fz4_A DNA repair protein RAD2 99.6 1.9E-14 6.4E-19 109.7 12.7 94 54-166 93-187 (237)
63 3crv_A XPD/RAD3 related DNA he 99.6 8.4E-15 2.9E-19 124.1 11.4 80 51-137 1-84 (551)
64 2jlq_A Serine protease subunit 99.5 4.5E-15 1.6E-19 122.9 5.2 104 51-168 1-105 (451)
65 2xau_A PRE-mRNA-splicing facto 99.5 6.4E-14 2.2E-18 122.8 11.9 131 29-168 69-203 (773)
66 3o8b_A HCV NS3 protease/helica 99.5 1.4E-14 4.9E-19 124.4 3.6 91 55-161 218-308 (666)
67 2w00_A HSDR, R.ECOR124I; ATP-b 99.5 1.4E-13 4.8E-18 123.6 9.1 108 54-168 271-393 (1038)
68 2vl7_A XPD; helicase, unknown 99.4 3.4E-13 1.2E-17 114.0 8.0 67 50-123 4-74 (540)
69 3h1t_A Type I site-specific re 99.4 1.7E-13 5.9E-18 116.6 6.1 100 54-166 178-290 (590)
70 2whx_A Serine protease/ntpase/ 99.4 1.6E-14 5.3E-19 123.9 -1.3 82 37-121 155-236 (618)
71 4a15_A XPD helicase, ATP-depen 99.4 1.3E-12 4.5E-17 112.0 7.8 84 54-139 3-90 (620)
72 2wv9_A Flavivirin protease NS2 99.3 6.9E-14 2.3E-18 120.9 -1.8 76 46-123 202-293 (673)
73 2z83_A Helicase/nucleoside tri 99.2 1.3E-11 4.5E-16 102.3 6.9 92 63-167 15-106 (459)
74 2v6i_A RNA helicase; membrane, 99.2 4.7E-11 1.6E-15 98.3 8.5 87 68-167 1-87 (431)
75 1z63_A Helicase of the SNF2/RA 99.2 1.1E-10 3.7E-15 97.3 9.4 102 54-164 37-142 (500)
76 1yks_A Genome polyprotein [con 99.2 1.8E-11 6.2E-16 101.0 4.3 57 65-123 4-60 (440)
77 3rc3_A ATP-dependent RNA helic 99.1 2E-10 6.7E-15 99.3 7.2 105 40-161 130-234 (677)
78 3dmq_A RNA polymerase-associat 99.0 5.2E-10 1.8E-14 100.3 9.1 104 54-162 153-260 (968)
79 3jux_A Protein translocase sub 99.0 2.9E-09 9.9E-14 91.9 12.4 83 48-136 70-152 (822)
80 3mwy_W Chromo domain-containin 99.0 4.1E-09 1.4E-13 92.8 11.1 108 54-164 236-359 (800)
81 1z3i_X Similar to RAD54-like; 98.8 3.7E-08 1.3E-12 84.8 12.4 109 54-164 55-184 (644)
82 1w36_D RECD, exodeoxyribonucle 98.4 3.7E-07 1.3E-11 78.1 7.5 66 56-122 151-218 (608)
83 4b3f_X DNA-binding protein smu 98.0 3.4E-05 1.2E-09 66.3 9.4 67 54-123 189-256 (646)
84 1c4o_A DNA nucleotide excision 97.9 5.3E-05 1.8E-09 65.5 9.0 69 51-126 6-79 (664)
85 2gk6_A Regulator of nonsense t 97.9 6.6E-05 2.2E-09 64.4 9.3 69 53-123 179-247 (624)
86 2xzl_A ATP-dependent helicase 97.8 7.3E-05 2.5E-09 65.9 9.3 69 53-123 359-427 (802)
87 3lfu_A DNA helicase II; SF1 he 97.7 0.0001 3.5E-09 63.0 8.7 70 53-124 8-78 (647)
88 2wjy_A Regulator of nonsense t 97.7 0.00018 6.1E-09 63.4 9.4 69 53-123 355-423 (800)
89 3upu_A ATP-dependent DNA helic 97.6 0.00021 7.1E-09 59.0 8.5 72 47-120 18-94 (459)
90 3e1s_A Exodeoxyribonuclease V, 97.6 0.00032 1.1E-08 59.6 9.1 63 54-119 189-251 (574)
91 1uaa_A REP helicase, protein ( 97.5 0.00028 9.5E-09 60.8 8.2 70 54-125 2-72 (673)
92 3u4q_A ATP-dependent helicase/ 97.3 0.00057 1.9E-08 62.9 8.1 68 54-123 10-80 (1232)
93 1pjr_A PCRA; DNA repair, DNA r 97.2 0.0012 4.2E-08 57.4 9.0 70 53-124 10-80 (724)
94 2d7d_A Uvrabc system protein B 97.2 0.0019 6.6E-08 55.7 9.7 67 54-126 12-83 (661)
95 3cpe_A Terminase, DNA packagin 96.9 0.0065 2.2E-07 51.7 10.0 72 54-126 163-234 (592)
96 2o0j_A Terminase, DNA packagin 96.8 0.0061 2.1E-07 49.2 9.1 71 54-125 163-233 (385)
97 2rb4_A ATP-dependent RNA helic 96.3 0.026 9E-07 39.9 8.6 58 97-158 31-92 (175)
98 2hjv_A ATP-dependent RNA helic 96.2 0.027 9.3E-07 39.4 8.3 55 99-157 34-92 (163)
99 1fuk_A Eukaryotic initiation f 96.1 0.039 1.3E-06 38.6 8.4 56 99-158 29-88 (165)
100 1t5i_A C_terminal domain of A 96.0 0.048 1.7E-06 38.5 8.8 56 99-158 30-89 (172)
101 3eaq_A Heat resistant RNA depe 95.9 0.047 1.6E-06 40.0 8.4 56 99-158 30-89 (212)
102 4b4t_M 26S protease regulatory 95.8 0.0041 1.4E-07 51.0 2.5 57 27-86 173-232 (434)
103 3hjh_A Transcription-repair-co 95.6 0.16 5.4E-06 42.2 11.3 52 68-125 13-64 (483)
104 3ec2_A DNA replication protein 95.3 0.022 7.5E-07 40.3 4.6 49 68-119 37-85 (180)
105 4b4t_J 26S protease regulatory 95.2 0.017 6E-07 46.8 4.1 57 28-87 141-200 (405)
106 4b4t_L 26S protease subunit RP 95.1 0.011 3.9E-07 48.4 2.8 57 28-87 174-233 (437)
107 4b4t_H 26S protease regulatory 94.9 0.018 6.1E-07 47.5 3.6 56 28-86 202-260 (467)
108 2p6n_A ATP-dependent RNA helic 94.9 0.22 7.4E-06 35.8 8.9 54 100-157 54-111 (191)
109 3i5x_A ATP-dependent RNA helic 94.8 0.38 1.3E-05 40.0 11.6 77 81-158 320-400 (563)
110 3co5_A Putative two-component 94.7 0.029 1E-06 38.4 3.7 21 66-86 24-44 (143)
111 4b4t_K 26S protease regulatory 94.7 0.018 6E-07 47.2 2.9 57 28-87 165-224 (428)
112 3n70_A Transport activator; si 94.7 0.036 1.2E-06 38.0 4.1 21 67-87 22-42 (145)
113 3vkw_A Replicase large subunit 94.5 0.039 1.3E-06 45.3 4.6 44 70-121 162-205 (446)
114 2jgn_A DBX, DDX3, ATP-dependen 94.5 0.12 4E-06 37.0 6.7 71 79-157 29-103 (185)
115 3i32_A Heat resistant RNA depe 94.4 0.14 4.9E-06 39.7 7.5 55 99-157 27-85 (300)
116 3sqw_A ATP-dependent RNA helic 94.4 0.52 1.8E-05 39.6 11.4 67 91-158 279-349 (579)
117 3h4m_A Proteasome-activating n 94.2 0.019 6.5E-07 43.6 2.1 57 29-87 11-69 (285)
118 1s2m_A Putative ATP-dependent 94.0 0.34 1.2E-05 38.2 9.2 56 99-158 257-316 (400)
119 3fht_A ATP-dependent RNA helic 93.8 0.24 8.3E-06 39.1 8.0 56 99-158 265-324 (412)
120 2i4i_A ATP-dependent RNA helic 93.7 0.34 1.2E-05 38.4 8.7 56 99-158 275-334 (417)
121 4b4t_I 26S protease regulatory 93.7 0.03 1E-06 45.9 2.3 57 27-86 174-233 (437)
122 1v5w_A DMC1, meiotic recombina 93.6 0.097 3.3E-06 41.3 5.2 42 69-110 122-166 (343)
123 3pey_A ATP-dependent RNA helic 93.6 0.36 1.2E-05 37.7 8.5 56 99-158 242-301 (395)
124 2dr3_A UPF0273 protein PH0284; 93.6 0.099 3.4E-06 38.4 4.9 52 66-121 20-71 (247)
125 3cf0_A Transitional endoplasmi 93.5 0.023 7.8E-07 44.0 1.4 55 30-87 10-67 (301)
126 1e9r_A Conjugal transfer prote 93.3 0.12 4.2E-06 41.8 5.5 44 68-114 52-95 (437)
127 1xti_A Probable ATP-dependent 93.3 0.55 1.9E-05 36.8 9.2 56 99-158 249-308 (391)
128 1xwi_A SKD1 protein; VPS4B, AA 93.2 0.15 5.1E-06 39.8 5.7 52 30-87 7-63 (322)
129 2w58_A DNAI, primosome compone 93.1 0.12 4.1E-06 37.0 4.7 18 70-87 55-72 (202)
130 3nbx_X ATPase RAVA; AAA+ ATPas 93.0 0.16 5.5E-06 42.3 5.9 43 43-86 16-58 (500)
131 2v1x_A ATP-dependent DNA helic 92.9 0.46 1.6E-05 40.3 8.5 56 99-158 266-325 (591)
132 2oap_1 GSPE-2, type II secreti 92.8 0.19 6.4E-06 42.0 6.0 41 44-86 236-277 (511)
133 2j0s_A ATP-dependent RNA helic 92.7 0.45 1.6E-05 37.7 8.0 56 99-158 275-334 (410)
134 1lv7_A FTSH; alpha/beta domain 92.7 0.12 4.2E-06 38.5 4.3 56 29-87 6-63 (257)
135 3hws_A ATP-dependent CLP prote 92.5 0.23 8E-06 39.1 5.9 20 68-87 50-69 (363)
136 1ofh_A ATP-dependent HSL prote 92.4 0.38 1.3E-05 36.5 6.9 19 69-87 50-68 (310)
137 2qgz_A Helicase loader, putati 92.3 0.36 1.2E-05 37.4 6.7 44 69-116 152-196 (308)
138 1oyw_A RECQ helicase, ATP-depe 92.3 0.7 2.4E-05 38.5 8.8 56 99-158 235-294 (523)
139 2yjt_D ATP-dependent RNA helic 91.5 0.025 8.7E-07 39.8 0.0 56 99-158 29-88 (170)
140 3b85_A Phosphate starvation-in 92.2 0.14 4.8E-06 37.5 4.0 33 55-87 8-40 (208)
141 3uk6_A RUVB-like 2; hexameric 92.2 0.17 6E-06 39.6 4.8 49 27-87 36-88 (368)
142 1ixz_A ATP-dependent metallopr 92.1 0.085 2.9E-06 39.4 2.8 56 28-86 9-66 (254)
143 2x8a_A Nuclear valosin-contain 92.1 0.028 9.7E-07 43.0 0.1 55 30-87 5-62 (274)
144 3eie_A Vacuolar protein sortin 92.1 0.031 1.1E-06 43.6 0.3 53 29-87 12-69 (322)
145 2orw_A Thymidine kinase; TMTK, 92.1 0.28 9.6E-06 35.0 5.4 39 69-110 3-41 (184)
146 1wp9_A ATP-dependent RNA helic 92.0 0.61 2.1E-05 37.2 7.9 75 79-158 341-427 (494)
147 1hv8_A Putative ATP-dependent 92.0 0.57 1.9E-05 36.2 7.5 56 99-158 237-296 (367)
148 1jbk_A CLPB protein; beta barr 91.9 0.088 3E-06 36.7 2.5 19 69-87 43-61 (195)
149 2b8t_A Thymidine kinase; deoxy 91.7 0.25 8.6E-06 36.7 4.9 39 69-110 12-50 (223)
150 2chg_A Replication factor C sm 91.7 1.3 4.3E-05 31.3 8.7 17 70-86 39-55 (226)
151 2v6i_A RNA helicase; membrane, 91.7 0.3 1E-05 39.6 5.8 54 100-158 171-225 (431)
152 2zts_A Putative uncharacterize 91.6 0.22 7.6E-06 36.5 4.6 50 68-120 29-78 (251)
153 3pfi_A Holliday junction ATP-d 91.5 0.37 1.3E-05 37.3 6.0 43 33-87 27-73 (338)
154 2r44_A Uncharacterized protein 91.4 0.19 6.6E-06 38.9 4.3 31 57-87 34-64 (331)
155 1kgd_A CASK, peripheral plasma 91.4 0.1 3.5E-06 37.0 2.4 20 68-87 4-23 (180)
156 1u0j_A DNA replication protein 91.4 0.62 2.1E-05 35.5 6.9 44 41-87 73-122 (267)
157 3lda_A DNA repair protein RAD5 91.4 0.62 2.1E-05 37.6 7.3 27 28-54 80-106 (400)
158 2bjv_A PSP operon transcriptio 91.4 0.19 6.6E-06 37.6 4.1 19 68-86 28-46 (265)
159 3dm5_A SRP54, signal recogniti 91.4 0.94 3.2E-05 37.1 8.4 86 70-161 101-194 (443)
160 1ex7_A Guanylate kinase; subst 91.3 0.18 6.1E-06 36.3 3.6 17 70-86 2-18 (186)
161 2gza_A Type IV secretion syste 91.2 0.13 4.3E-06 41.0 3.1 22 65-86 171-192 (361)
162 3bos_A Putative DNA replicatio 91.2 0.11 3.8E-06 37.8 2.5 20 68-87 51-70 (242)
163 1d2n_A N-ethylmaleimide-sensit 91.2 0.041 1.4E-06 41.6 0.1 19 69-87 64-82 (272)
164 3vkg_A Dynein heavy chain, cyt 91.0 0.56 1.9E-05 47.2 7.7 48 39-87 873-924 (3245)
165 3eiq_A Eukaryotic initiation f 91.0 0.36 1.2E-05 38.2 5.5 59 96-158 276-338 (414)
166 3vaa_A Shikimate kinase, SK; s 90.9 0.13 4.5E-06 36.9 2.7 21 67-87 23-43 (199)
167 3te6_A Regulatory protein SIR3 90.9 0.2 7E-06 39.2 3.8 26 69-95 45-70 (318)
168 2p65_A Hypothetical protein PF 90.8 0.091 3.1E-06 36.6 1.7 19 69-87 43-61 (187)
169 3syl_A Protein CBBX; photosynt 90.8 0.12 4.1E-06 39.5 2.4 19 69-87 67-85 (309)
170 2db3_A ATP-dependent RNA helic 90.7 1.2 4E-05 36.0 8.4 53 102-158 302-358 (434)
171 4ag6_A VIRB4 ATPase, type IV s 90.7 0.31 1.1E-05 38.9 4.8 42 68-112 34-75 (392)
172 1a5t_A Delta prime, HOLB; zinc 90.7 0.72 2.5E-05 36.0 6.9 33 56-88 4-43 (334)
173 2i1q_A DNA repair and recombin 90.6 0.37 1.3E-05 37.3 5.1 24 69-92 98-121 (322)
174 4akg_A Glutathione S-transfera 90.6 0.83 2.8E-05 45.4 8.4 48 39-87 890-941 (2695)
175 1yks_A Genome polyprotein [con 90.6 0.38 1.3E-05 39.2 5.4 54 100-158 177-231 (440)
176 2qz4_A Paraplegin; AAA+, SPG7, 90.5 0.14 4.9E-06 38.0 2.6 53 32-87 3-57 (262)
177 3b9p_A CG5977-PA, isoform A; A 90.5 0.14 4.6E-06 39.1 2.5 55 30-87 16-72 (297)
178 1xx6_A Thymidine kinase; NESG, 90.5 0.42 1.4E-05 34.5 5.0 39 69-110 8-46 (191)
179 3iij_A Coilin-interacting nucl 90.4 0.12 4.3E-06 36.2 2.1 21 67-87 9-29 (180)
180 2kjq_A DNAA-related protein; s 90.4 0.18 6E-06 34.8 2.8 20 68-87 35-54 (149)
181 3kl4_A SRP54, signal recogniti 90.4 0.74 2.5E-05 37.6 6.9 86 70-161 98-191 (433)
182 1lvg_A Guanylate kinase, GMP k 90.4 0.16 5.3E-06 36.7 2.6 20 68-87 3-22 (198)
183 2c9o_A RUVB-like 1; hexameric 90.4 0.34 1.2E-05 39.6 4.9 52 28-87 30-81 (456)
184 2eyu_A Twitching motility prot 90.4 0.11 3.9E-06 39.3 1.9 21 66-86 22-42 (261)
185 3u4q_B ATP-dependent helicase/ 90.3 0.33 1.1E-05 44.4 5.2 40 72-111 4-43 (1166)
186 2pt7_A CAG-ALFA; ATPase, prote 90.2 0.16 5.5E-06 39.9 2.7 20 66-85 168-187 (330)
187 3trf_A Shikimate kinase, SK; a 90.2 0.17 5.7E-06 35.7 2.6 19 69-87 5-23 (185)
188 2j41_A Guanylate kinase; GMP, 90.2 0.15 5.2E-06 36.4 2.4 21 66-86 3-23 (207)
189 2cvh_A DNA repair and recombin 90.2 0.23 7.7E-06 35.8 3.4 36 66-107 17-52 (220)
190 1zp6_A Hypothetical protein AT 90.0 0.11 3.7E-06 36.8 1.5 21 66-86 6-26 (191)
191 1p9r_A General secretion pathw 89.9 0.3 1E-05 39.7 4.2 29 58-86 154-184 (418)
192 2w0m_A SSO2452; RECA, SSPF, un 89.9 0.32 1.1E-05 35.2 4.0 23 66-88 20-42 (235)
193 1qhx_A CPT, protein (chloramph 89.8 0.18 6.3E-06 35.1 2.6 19 69-87 3-21 (178)
194 3tau_A Guanylate kinase, GMP k 89.8 0.19 6.4E-06 36.5 2.7 19 68-86 7-25 (208)
195 1g5t_A COB(I)alamin adenosyltr 89.7 4.4 0.00015 29.3 10.2 35 69-106 28-62 (196)
196 1kag_A SKI, shikimate kinase I 89.7 0.2 7E-06 34.7 2.7 18 69-86 4-21 (173)
197 1l8q_A Chromosomal replication 89.7 0.76 2.6E-05 35.4 6.3 44 69-116 37-80 (324)
198 2qor_A Guanylate kinase; phosp 89.7 0.17 5.7E-06 36.5 2.3 21 66-86 9-29 (204)
199 3bh0_A DNAB-like replicative h 89.7 0.82 2.8E-05 35.4 6.4 40 66-108 65-104 (315)
200 1znw_A Guanylate kinase, GMP k 89.7 0.2 6.8E-06 36.2 2.7 22 65-86 16-37 (207)
201 2ius_A DNA translocase FTSK; n 89.6 0.59 2E-05 39.1 5.8 25 68-92 166-190 (512)
202 3ice_A Transcription terminati 89.5 2.7 9.3E-05 34.1 9.3 34 54-87 156-192 (422)
203 3lw7_A Adenylate kinase relate 89.5 0.19 6.3E-06 34.6 2.3 17 71-87 3-19 (179)
204 1z6g_A Guanylate kinase; struc 89.4 0.23 7.8E-06 36.4 2.9 21 66-86 20-40 (218)
205 3tr0_A Guanylate kinase, GMP k 89.4 0.21 7.3E-06 35.6 2.7 19 68-86 6-24 (205)
206 1iy2_A ATP-dependent metallopr 89.3 0.13 4.5E-06 39.0 1.5 54 30-86 35-90 (278)
207 3cmu_A Protein RECA, recombina 89.2 1.1 3.6E-05 43.5 7.7 41 69-112 1427-1467(2050)
208 1ojl_A Transcriptional regulat 89.2 0.32 1.1E-05 37.6 3.7 19 68-86 24-42 (304)
209 2z43_A DNA repair and recombin 89.0 0.65 2.2E-05 36.1 5.4 42 69-110 107-151 (324)
210 4gp7_A Metallophosphoesterase; 89.0 0.19 6.5E-06 35.3 2.1 20 68-87 8-27 (171)
211 3t15_A Ribulose bisphosphate c 88.9 0.19 6.6E-06 38.6 2.2 19 69-87 36-54 (293)
212 1y63_A LMAJ004144AAA protein; 88.6 0.26 9E-06 34.9 2.7 20 68-87 9-28 (184)
213 1kht_A Adenylate kinase; phosp 88.5 0.26 8.8E-06 34.6 2.6 18 69-86 3-20 (192)
214 1tue_A Replication protein E1; 88.5 0.83 2.8E-05 33.6 5.3 50 42-94 29-82 (212)
215 2d7d_A Uvrabc system protein B 88.4 1.6 5.4E-05 37.5 7.8 56 99-158 444-503 (661)
216 2qp9_X Vacuolar protein sortin 88.4 0.26 8.9E-06 38.9 2.8 53 29-87 45-102 (355)
217 3a00_A Guanylate kinase, GMP k 88.4 0.28 9.7E-06 34.7 2.7 17 70-86 2-18 (186)
218 3foz_A TRNA delta(2)-isopenten 88.3 0.25 8.5E-06 38.7 2.5 17 71-87 12-28 (316)
219 1njg_A DNA polymerase III subu 88.3 0.48 1.7E-05 34.0 4.0 17 70-86 46-62 (250)
220 1c4o_A DNA nucleotide excision 88.3 4.9 0.00017 34.5 10.8 55 99-157 438-496 (664)
221 3exa_A TRNA delta(2)-isopenten 88.3 0.25 8.7E-06 38.7 2.5 18 70-87 4-21 (322)
222 3a8t_A Adenylate isopentenyltr 88.2 0.26 8.8E-06 39.0 2.6 19 69-87 40-58 (339)
223 2ehv_A Hypothetical protein PH 88.2 1.2 4.1E-05 32.5 6.2 25 65-89 26-50 (251)
224 2ze6_A Isopentenyl transferase 88.2 0.25 8.4E-06 37.1 2.4 17 71-87 3-19 (253)
225 2qmh_A HPR kinase/phosphorylas 88.1 0.23 7.8E-06 36.4 2.1 19 69-87 34-52 (205)
226 4eun_A Thermoresistant glucoki 88.0 0.3 1E-05 35.0 2.7 20 68-87 28-47 (200)
227 3ney_A 55 kDa erythrocyte memb 88.0 0.3 1E-05 35.5 2.7 21 67-87 17-37 (197)
228 2px0_A Flagellar biosynthesis 88.0 0.91 3.1E-05 35.0 5.6 19 69-87 105-123 (296)
229 1ly1_A Polynucleotide kinase; 88.0 0.27 9.3E-06 34.1 2.4 16 71-86 4-19 (181)
230 1knq_A Gluconate kinase; ALFA/ 87.9 0.25 8.4E-06 34.5 2.1 19 69-87 8-26 (175)
231 1um8_A ATP-dependent CLP prote 87.7 0.3 1E-05 38.6 2.8 19 69-87 72-90 (376)
232 3kb2_A SPBC2 prophage-derived 87.7 0.28 9.7E-06 33.8 2.3 17 71-87 3-19 (173)
233 2jlq_A Serine protease subunit 87.7 0.84 2.9E-05 37.2 5.4 54 100-158 188-242 (451)
234 2wv9_A Flavivirin protease NS2 87.6 0.8 2.7E-05 39.5 5.5 55 99-158 409-464 (673)
235 1s96_A Guanylate kinase, GMP k 87.6 0.32 1.1E-05 35.8 2.7 22 66-87 13-34 (219)
236 1n0w_A DNA repair protein RAD5 87.5 0.54 1.9E-05 34.3 3.9 26 66-91 21-46 (243)
237 2xau_A PRE-mRNA-splicing facto 87.4 3.2 0.00011 36.3 9.3 60 99-158 302-377 (773)
238 4fcw_A Chaperone protein CLPB; 87.3 0.36 1.2E-05 36.8 2.9 18 70-87 48-65 (311)
239 2ewv_A Twitching motility prot 87.3 0.23 7.7E-06 39.7 1.8 21 66-86 133-153 (372)
240 2r62_A Cell division protease 87.2 0.15 5.1E-06 38.2 0.7 19 69-87 44-62 (268)
241 3d8b_A Fidgetin-like protein 1 87.2 0.31 1.1E-05 38.5 2.5 19 69-87 117-135 (357)
242 3jvv_A Twitching mobility prot 87.1 0.28 9.4E-06 39.0 2.1 19 68-86 122-140 (356)
243 2z4s_A Chromosomal replication 87.0 0.92 3.1E-05 36.9 5.3 48 69-118 130-177 (440)
244 3vfd_A Spastin; ATPase, microt 87.0 0.32 1.1E-05 38.8 2.5 19 69-87 148-166 (389)
245 3bgw_A DNAB-like replicative h 87.0 0.75 2.6E-05 37.6 4.7 40 66-108 194-233 (444)
246 3tbk_A RIG-I helicase domain; 87.0 2.2 7.4E-05 34.9 7.6 78 80-158 370-460 (555)
247 4a1f_A DNAB helicase, replicat 86.9 1.7 5.7E-05 34.3 6.6 40 66-108 43-82 (338)
248 2v1u_A Cell division control p 86.9 0.31 1.1E-05 38.1 2.3 19 69-87 44-62 (387)
249 3cm0_A Adenylate kinase; ATP-b 86.9 0.25 8.5E-06 34.7 1.6 20 68-87 3-22 (186)
250 2qby_B CDC6 homolog 3, cell di 86.9 1.2 4.1E-05 34.8 5.8 18 69-86 45-62 (384)
251 2zr9_A Protein RECA, recombina 86.8 0.91 3.1E-05 35.9 5.0 37 68-107 60-96 (349)
252 1w36_B RECB, exodeoxyribonucle 86.8 1.7 5.7E-05 40.0 7.4 54 70-123 17-79 (1180)
253 1cr0_A DNA primase/helicase; R 86.7 0.82 2.8E-05 34.8 4.6 40 66-107 32-71 (296)
254 3sfz_A APAF-1, apoptotic pepti 86.5 0.91 3.1E-05 41.1 5.5 32 129-160 236-267 (1249)
255 1sxj_D Activator 1 41 kDa subu 86.4 0.58 2E-05 36.2 3.7 18 70-87 59-76 (353)
256 1u94_A RECA protein, recombina 86.3 1.1 3.6E-05 35.6 5.2 38 68-108 62-99 (356)
257 2iut_A DNA translocase FTSK; n 86.3 1.2 4.2E-05 37.6 5.8 26 69-94 214-239 (574)
258 1hqc_A RUVB; extended AAA-ATPa 86.2 0.28 9.6E-06 37.6 1.7 19 69-87 38-56 (324)
259 4gl2_A Interferon-induced heli 86.1 0.65 2.2E-05 39.7 4.1 59 100-158 400-472 (699)
260 3uie_A Adenylyl-sulfate kinase 86.1 0.36 1.2E-05 34.6 2.2 20 67-86 23-42 (200)
261 1bg2_A Kinesin; motor protein, 86.0 0.69 2.4E-05 36.3 3.9 23 64-86 71-95 (325)
262 2r2a_A Uncharacterized protein 85.9 0.63 2.2E-05 33.7 3.4 22 71-92 7-28 (199)
263 2zpa_A Uncharacterized protein 85.9 1.4 4.7E-05 38.1 6.0 61 54-120 175-237 (671)
264 3nwj_A ATSK2; P loop, shikimat 85.8 0.57 2E-05 35.3 3.2 21 67-87 46-66 (250)
265 3f9v_A Minichromosome maintena 85.8 0.58 2E-05 39.8 3.6 16 71-86 329-344 (595)
266 3u61_B DNA polymerase accessor 85.8 6.8 0.00023 29.8 9.5 71 32-123 23-96 (324)
267 1m7g_A Adenylylsulfate kinase; 85.8 0.67 2.3E-05 33.4 3.5 31 56-87 13-43 (211)
268 2zan_A Vacuolar protein sortin 85.7 0.41 1.4E-05 39.1 2.5 56 29-87 128-185 (444)
269 1sxj_E Activator 1 40 kDa subu 85.7 1.5 5.2E-05 33.9 5.8 44 32-87 11-54 (354)
270 3hr8_A Protein RECA; alpha and 85.7 0.89 3E-05 36.1 4.4 39 68-109 60-98 (356)
271 3tif_A Uncharacterized ABC tra 85.7 0.37 1.3E-05 35.8 2.1 20 67-86 29-48 (235)
272 3cf2_A TER ATPase, transitiona 85.6 0.44 1.5E-05 42.0 2.8 56 29-86 471-528 (806)
273 3crm_A TRNA delta(2)-isopenten 85.5 0.43 1.5E-05 37.4 2.5 18 70-87 6-23 (323)
274 2bdt_A BH3686; alpha-beta prot 85.5 0.31 1.1E-05 34.4 1.6 18 70-87 3-20 (189)
275 2ffh_A Protein (FFH); SRP54, s 85.5 4.3 0.00015 33.0 8.5 86 70-161 99-192 (425)
276 3t61_A Gluconokinase; PSI-biol 85.4 0.44 1.5E-05 34.0 2.4 19 69-87 18-36 (202)
277 3c8u_A Fructokinase; YP_612366 85.2 0.38 1.3E-05 34.7 1.9 19 68-86 21-39 (208)
278 2rhm_A Putative kinase; P-loop 85.2 0.4 1.4E-05 33.7 2.1 18 69-86 5-22 (193)
279 3d3q_A TRNA delta(2)-isopenten 85.2 0.47 1.6E-05 37.5 2.6 17 71-87 9-25 (340)
280 1tev_A UMP-CMP kinase; ploop, 85.1 0.41 1.4E-05 33.6 2.1 19 69-87 3-21 (196)
281 2r6a_A DNAB helicase, replicat 85.1 1.6 5.6E-05 35.5 5.9 41 66-108 200-240 (454)
282 1ye8_A Protein THEP1, hypothet 85.0 0.49 1.7E-05 33.5 2.4 16 71-86 2-17 (178)
283 2q6t_A DNAB replication FORK h 85.0 1.6 5.3E-05 35.5 5.7 41 66-108 197-237 (444)
284 1via_A Shikimate kinase; struc 85.0 0.53 1.8E-05 32.7 2.6 18 70-87 5-22 (175)
285 1gvn_B Zeta; postsegregational 84.9 0.42 1.4E-05 36.6 2.1 18 69-86 33-50 (287)
286 2bwj_A Adenylate kinase 5; pho 84.8 0.5 1.7E-05 33.4 2.4 19 68-86 11-29 (199)
287 2qby_A CDC6 homolog 1, cell di 84.7 0.78 2.7E-05 35.7 3.7 19 69-87 45-63 (386)
288 2c95_A Adenylate kinase 1; tra 84.7 0.54 1.9E-05 33.1 2.5 19 68-86 8-26 (196)
289 2iyv_A Shikimate kinase, SK; t 84.7 0.61 2.1E-05 32.6 2.8 18 70-87 3-20 (184)
290 3o8b_A HCV NS3 protease/helica 84.6 1.3 4.6E-05 38.1 5.3 53 99-158 395-447 (666)
291 2chq_A Replication factor C sm 84.6 1.7 5.8E-05 32.9 5.5 43 32-87 14-56 (319)
292 2whx_A Serine protease/ntpase/ 84.5 1.7 5.9E-05 37.0 6.0 54 100-158 355-409 (618)
293 4a74_A DNA repair and recombin 84.5 0.45 1.5E-05 34.4 2.1 23 66-88 22-44 (231)
294 3fb4_A Adenylate kinase; psych 84.5 0.53 1.8E-05 33.9 2.5 17 71-87 2-18 (216)
295 1fnn_A CDC6P, cell division co 84.5 0.73 2.5E-05 36.1 3.4 17 71-87 46-62 (389)
296 3hu3_A Transitional endoplasmi 84.5 0.51 1.7E-05 39.1 2.6 19 69-87 238-256 (489)
297 3lnc_A Guanylate kinase, GMP k 84.5 0.36 1.2E-05 35.4 1.5 21 66-86 24-44 (231)
298 1xp8_A RECA protein, recombina 84.4 1.4 4.8E-05 35.1 5.0 37 68-107 73-109 (366)
299 1in4_A RUVB, holliday junction 84.2 0.56 1.9E-05 36.6 2.6 18 70-87 52-69 (334)
300 3dl0_A Adenylate kinase; phosp 84.2 0.56 1.9E-05 33.8 2.5 17 71-87 2-18 (216)
301 2v54_A DTMP kinase, thymidylat 84.1 0.63 2.1E-05 33.0 2.7 19 68-86 3-21 (204)
302 1g8p_A Magnesium-chelatase 38 84.1 0.28 9.6E-06 38.1 0.8 19 69-87 45-63 (350)
303 1z6t_A APAF-1, apoptotic prote 84.0 0.99 3.4E-05 37.7 4.2 30 130-159 237-266 (591)
304 1zd8_A GTP:AMP phosphotransfer 84.0 0.57 1.9E-05 34.2 2.4 19 68-86 6-24 (227)
305 2r8r_A Sensor protein; KDPD, P 84.0 1.7 5.7E-05 32.4 4.9 20 71-90 8-27 (228)
306 2qt1_A Nicotinamide riboside k 84.0 0.3 1E-05 35.1 0.9 24 64-87 16-39 (207)
307 3asz_A Uridine kinase; cytidin 83.8 0.5 1.7E-05 33.9 2.1 19 68-86 5-23 (211)
308 3eph_A TRNA isopentenyltransfe 83.8 0.53 1.8E-05 38.2 2.3 17 71-87 4-20 (409)
309 2cbz_A Multidrug resistance-as 83.7 0.5 1.7E-05 35.1 2.1 20 67-86 29-48 (237)
310 1zuh_A Shikimate kinase; alpha 83.7 0.61 2.1E-05 32.1 2.4 18 70-87 8-25 (168)
311 2j9r_A Thymidine kinase; TK1, 83.7 2 6.7E-05 31.6 5.2 40 69-111 28-67 (214)
312 1aky_A Adenylate kinase; ATP:A 83.6 0.64 2.2E-05 33.7 2.6 19 69-87 4-22 (220)
313 2pez_A Bifunctional 3'-phospho 83.5 0.56 1.9E-05 32.8 2.2 19 68-86 4-22 (179)
314 1e6c_A Shikimate kinase; phosp 83.5 0.69 2.3E-05 31.9 2.6 18 70-87 3-20 (173)
315 3io5_A Recombination and repai 83.4 1.4 4.9E-05 34.6 4.6 43 69-113 29-71 (333)
316 1vt4_I APAF-1 related killer D 83.4 3.3 0.00011 38.0 7.4 34 128-161 243-276 (1221)
317 3nwn_A Kinesin-like protein KI 83.4 0.93 3.2E-05 36.1 3.6 24 63-86 97-122 (359)
318 3pxg_A Negative regulator of g 83.3 0.92 3.2E-05 37.2 3.7 19 69-87 201-219 (468)
319 1nij_A Hypothetical protein YJ 83.3 1.2 4.1E-05 34.6 4.1 16 71-86 6-21 (318)
320 2cdn_A Adenylate kinase; phosp 83.3 0.68 2.3E-05 33.0 2.6 19 69-87 20-38 (201)
321 1sxj_A Activator 1 95 kDa subu 83.3 1 3.6E-05 37.3 4.0 19 69-87 77-95 (516)
322 1nks_A Adenylate kinase; therm 83.1 0.6 2.1E-05 32.6 2.2 16 71-86 3-18 (194)
323 3k1j_A LON protease, ATP-depen 83.1 1.1 3.6E-05 38.1 4.0 25 63-87 54-78 (604)
324 1f2t_A RAD50 ABC-ATPase; DNA d 83.1 0.67 2.3E-05 31.8 2.4 16 71-86 25-40 (149)
325 2eyq_A TRCF, transcription-rep 83.1 1.9 6.6E-05 39.5 6.0 58 99-158 811-872 (1151)
326 1iqp_A RFCS; clamp loader, ext 83.1 1.5 5.1E-05 33.3 4.6 17 71-87 48-64 (327)
327 2v9p_A Replication protein E1; 83.0 0.78 2.7E-05 35.7 2.9 20 67-86 124-143 (305)
328 1zak_A Adenylate kinase; ATP:A 83.0 0.74 2.5E-05 33.4 2.7 19 69-87 5-23 (222)
329 1nlf_A Regulatory protein REPA 82.9 0.67 2.3E-05 35.0 2.5 27 64-90 25-51 (279)
330 4akg_A Glutathione S-transfera 82.8 0.94 3.2E-05 45.1 4.0 21 66-86 1264-1284(2695)
331 2i3b_A HCR-ntpase, human cance 82.8 0.78 2.7E-05 32.9 2.7 19 69-87 1-19 (189)
332 1cke_A CK, MSSA, protein (cyti 82.8 0.7 2.4E-05 33.4 2.5 19 69-87 5-23 (227)
333 3qf7_A RAD50; ABC-ATPase, ATPa 82.8 0.62 2.1E-05 37.0 2.4 16 71-86 25-40 (365)
334 3kta_A Chromosome segregation 82.8 0.64 2.2E-05 32.5 2.2 16 71-86 28-43 (182)
335 1ry6_A Internal kinesin; kines 82.8 1.1 3.6E-05 35.8 3.7 19 68-86 82-102 (360)
336 2yvu_A Probable adenylyl-sulfa 82.7 0.63 2.2E-05 32.7 2.2 20 68-87 12-31 (186)
337 2ykg_A Probable ATP-dependent 82.6 2.1 7.2E-05 36.5 5.8 60 99-158 397-469 (696)
338 1sgw_A Putative ABC transporte 82.6 0.63 2.1E-05 34.1 2.2 20 67-86 33-52 (214)
339 1np6_A Molybdopterin-guanine d 82.5 2.6 8.9E-05 29.7 5.4 17 70-86 7-23 (174)
340 1w4r_A Thymidine kinase; type 82.5 1.9 6.5E-05 31.2 4.7 38 69-109 20-57 (195)
341 2ce7_A Cell division protein F 82.5 0.64 2.2E-05 38.5 2.4 54 29-87 10-67 (476)
342 2bbw_A Adenylate kinase 4, AK4 82.4 0.75 2.6E-05 34.0 2.6 18 69-86 27-44 (246)
343 3pvs_A Replication-associated 82.3 0.67 2.3E-05 37.9 2.5 18 70-87 51-68 (447)
344 2ff7_A Alpha-hemolysin translo 82.3 0.61 2.1E-05 34.9 2.0 20 67-86 33-52 (247)
345 3dc4_A Kinesin-like protein NO 82.3 1 3.4E-05 35.7 3.3 23 64-86 88-112 (344)
346 2pze_A Cystic fibrosis transme 82.2 0.61 2.1E-05 34.5 2.0 20 67-86 32-51 (229)
347 3gfo_A Cobalt import ATP-bindi 82.2 0.59 2E-05 35.7 1.9 19 68-86 33-51 (275)
348 2pt5_A Shikimate kinase, SK; a 82.2 0.76 2.6E-05 31.5 2.4 16 71-86 2-17 (168)
349 2plr_A DTMP kinase, probable t 82.1 0.67 2.3E-05 33.0 2.2 20 68-87 3-22 (213)
350 1g41_A Heat shock protein HSLU 82.1 0.78 2.7E-05 37.6 2.8 18 69-86 50-67 (444)
351 1qf9_A UMP/CMP kinase, protein 82.1 0.71 2.4E-05 32.3 2.3 17 70-86 7-23 (194)
352 2ghi_A Transport protein; mult 82.0 0.64 2.2E-05 35.1 2.1 20 67-86 44-63 (260)
353 2wwf_A Thymidilate kinase, put 82.0 0.79 2.7E-05 32.7 2.5 20 68-87 9-28 (212)
354 2pcj_A ABC transporter, lipopr 81.9 0.6 2.1E-05 34.4 1.8 19 68-86 29-47 (224)
355 4g1u_C Hemin import ATP-bindin 81.8 0.63 2.2E-05 35.3 2.0 19 68-86 36-54 (266)
356 1nn5_A Similar to deoxythymidy 81.8 0.83 2.9E-05 32.6 2.6 20 68-87 8-27 (215)
357 2vvg_A Kinesin-2; motor protei 81.7 1.3 4.3E-05 35.2 3.7 23 64-86 83-107 (350)
358 2y65_A Kinesin, kinesin heavy 81.6 1.3 4.3E-05 35.4 3.7 23 64-86 78-102 (365)
359 4a14_A Kinesin, kinesin-like p 81.6 1.3 4.3E-05 35.1 3.7 23 64-86 77-101 (344)
360 3m6a_A ATP-dependent protease 81.5 0.74 2.5E-05 38.6 2.5 20 68-87 107-126 (543)
361 1g6h_A High-affinity branched- 81.5 0.67 2.3E-05 34.9 2.0 20 67-86 31-50 (257)
362 3b6u_A Kinesin-like protein KI 81.5 1.2 4.1E-05 35.6 3.6 23 64-86 95-119 (372)
363 2z83_A Helicase/nucleoside tri 81.5 1.2 4E-05 36.4 3.6 54 100-158 190-244 (459)
364 1ak2_A Adenylate kinase isoenz 81.4 0.8 2.7E-05 33.6 2.4 19 69-87 16-34 (233)
365 2if2_A Dephospho-COA kinase; a 81.4 0.76 2.6E-05 32.7 2.2 16 71-86 3-18 (204)
366 1goj_A Kinesin, kinesin heavy 81.4 1.2 4.1E-05 35.4 3.5 22 65-86 75-98 (355)
367 1ji0_A ABC transporter; ATP bi 81.3 0.7 2.4E-05 34.4 2.0 19 68-86 31-49 (240)
368 1ukz_A Uridylate kinase; trans 81.2 0.83 2.8E-05 32.5 2.4 17 70-86 16-32 (203)
369 1pzn_A RAD51, DNA repair and r 81.2 0.99 3.4E-05 35.6 3.0 22 69-90 131-152 (349)
370 2zfi_A Kinesin-like protein KI 81.1 1.3 4.6E-05 35.3 3.7 24 63-86 82-107 (366)
371 1v8k_A Kinesin-like protein KI 81.1 1.4 4.9E-05 35.7 3.9 23 64-86 148-172 (410)
372 1b0u_A Histidine permease; ABC 81.1 0.71 2.4E-05 34.9 2.1 19 68-86 31-49 (262)
373 1jjv_A Dephospho-COA kinase; P 81.1 0.84 2.9E-05 32.6 2.4 16 71-86 4-19 (206)
374 4e22_A Cytidylate kinase; P-lo 81.0 0.87 3E-05 34.0 2.5 20 68-87 26-45 (252)
375 1t5c_A CENP-E protein, centrom 81.0 1.3 4.4E-05 35.1 3.6 23 64-86 71-95 (349)
376 3t0q_A AGR253WP; kinesin, alph 81.0 1.5 5E-05 34.8 3.9 25 62-86 77-103 (349)
377 2h58_A Kinesin-like protein KI 80.9 1.4 4.8E-05 34.6 3.7 25 62-86 72-98 (330)
378 3pxi_A Negative regulator of g 80.9 1.2 4.1E-05 38.7 3.7 19 69-87 201-219 (758)
379 2jaq_A Deoxyguanosine kinase; 80.9 0.88 3E-05 32.1 2.4 16 71-86 2-17 (205)
380 1mv5_A LMRA, multidrug resista 80.9 0.6 2.1E-05 34.8 1.5 19 68-86 27-45 (243)
381 2d2e_A SUFC protein; ABC-ATPas 80.8 0.73 2.5E-05 34.5 2.0 21 67-87 27-47 (250)
382 1x88_A Kinesin-like protein KI 80.8 1.3 4.5E-05 35.2 3.6 24 63-86 81-106 (359)
383 2zu0_C Probable ATP-dependent 80.7 0.75 2.6E-05 34.9 2.1 19 68-86 45-63 (267)
384 3gbj_A KIF13B protein; kinesin 80.7 1.3 4.6E-05 35.1 3.6 25 62-86 84-110 (354)
385 3a4m_A L-seryl-tRNA(SEC) kinas 80.7 0.86 2.9E-05 34.2 2.4 19 69-87 4-22 (260)
386 3be4_A Adenylate kinase; malar 80.6 0.92 3.1E-05 32.9 2.5 18 69-86 5-22 (217)
387 4etp_A Kinesin-like protein KA 80.6 1.4 4.7E-05 35.6 3.7 25 62-86 132-158 (403)
388 2ixe_A Antigen peptide transpo 80.6 0.76 2.6E-05 34.9 2.1 20 67-86 43-62 (271)
389 3lre_A Kinesin-like protein KI 80.5 1.3 4.5E-05 35.1 3.5 23 64-86 99-123 (355)
390 3tlx_A Adenylate kinase 2; str 80.5 1 3.4E-05 33.4 2.7 20 68-87 28-47 (243)
391 2nr8_A Kinesin-like protein KI 80.4 1.4 4.8E-05 35.0 3.6 24 63-86 96-121 (358)
392 2yz2_A Putative ABC transporte 80.4 0.79 2.7E-05 34.7 2.1 19 68-86 32-50 (266)
393 1e4v_A Adenylate kinase; trans 80.4 0.89 3.1E-05 32.8 2.3 17 71-87 2-18 (214)
394 2qi9_C Vitamin B12 import ATP- 80.3 0.77 2.6E-05 34.5 2.0 19 68-86 25-43 (249)
395 2heh_A KIF2C protein; kinesin, 80.3 1.5 5E-05 35.3 3.7 23 64-86 128-152 (387)
396 1q57_A DNA primase/helicase; d 80.2 1.4 4.9E-05 36.3 3.8 41 66-108 239-279 (503)
397 2vli_A Antibiotic resistance p 80.2 0.64 2.2E-05 32.4 1.4 20 68-87 4-23 (183)
398 3cob_A Kinesin heavy chain-lik 80.2 1.2 4.2E-05 35.5 3.2 25 62-86 71-97 (369)
399 1vpl_A ABC transporter, ATP-bi 80.2 0.8 2.7E-05 34.5 2.1 19 68-86 40-58 (256)
400 2olj_A Amino acid ABC transpor 80.1 0.81 2.8E-05 34.7 2.1 19 68-86 49-67 (263)
401 1htw_A HI0065; nucleotide-bind 80.1 0.74 2.5E-05 32.0 1.7 20 67-86 31-50 (158)
402 1sxj_C Activator 1 40 kDa subu 80.1 2.3 7.7E-05 33.0 4.7 17 71-87 48-64 (340)
403 1xjc_A MOBB protein homolog; s 80.0 3.2 0.00011 29.2 5.0 16 71-86 6-21 (169)
404 3u06_A Protein claret segregat 80.0 1.3 4.5E-05 35.9 3.4 25 62-86 130-156 (412)
405 3auy_A DNA double-strand break 79.8 0.86 2.9E-05 36.1 2.2 16 71-86 27-42 (371)
406 1f9v_A Kinesin-like protein KA 79.8 1.5 5.3E-05 34.6 3.6 25 62-86 76-102 (347)
407 2nq2_C Hypothetical ABC transp 79.7 0.81 2.8E-05 34.4 1.9 19 68-86 30-48 (253)
408 2ihy_A ABC transporter, ATP-bi 79.6 0.83 2.8E-05 34.9 2.0 19 68-86 46-64 (279)
409 1rj9_A FTSY, signal recognitio 79.6 1.1 3.6E-05 34.8 2.6 18 69-86 102-119 (304)
410 2pbr_A DTMP kinase, thymidylat 79.5 1 3.5E-05 31.5 2.4 16 71-86 2-17 (195)
411 2wbe_C Bipolar kinesin KRP-130 79.4 1.4 4.9E-05 35.2 3.4 23 64-86 94-118 (373)
412 3fmp_B ATP-dependent RNA helic 79.2 0.39 1.3E-05 39.2 0.0 55 100-158 333-391 (479)
413 3nh6_A ATP-binding cassette SU 79.2 0.81 2.8E-05 35.5 1.8 19 68-86 79-97 (306)
414 1ypw_A Transitional endoplasmi 79.0 0.86 2.9E-05 40.1 2.1 19 68-86 237-255 (806)
415 2dhr_A FTSH; AAA+ protein, hex 79.0 0.97 3.3E-05 37.6 2.3 51 30-87 26-82 (499)
416 2p5t_B PEZT; postsegregational 78.9 0.65 2.2E-05 34.6 1.2 18 69-86 32-49 (253)
417 2z0h_A DTMP kinase, thymidylat 78.8 1.1 3.9E-05 31.4 2.4 16 72-87 3-18 (197)
418 1rz3_A Hypothetical protein rb 78.5 1.1 3.7E-05 32.1 2.2 18 69-86 22-39 (201)
419 3bfn_A Kinesin-like protein KI 78.5 1.4 4.7E-05 35.5 3.0 32 55-86 75-116 (388)
420 2owm_A Nckin3-434, related to 78.4 1.8 6.1E-05 35.4 3.7 23 64-86 130-154 (443)
421 3dmq_A RNA polymerase-associat 78.3 3.4 0.00012 37.1 5.8 57 98-157 501-563 (968)
422 1uf9_A TT1252 protein; P-loop, 78.1 1.1 3.8E-05 31.6 2.2 18 70-87 9-26 (203)
423 1vma_A Cell division protein F 77.9 3 0.0001 32.3 4.7 18 70-87 105-122 (306)
424 2xb4_A Adenylate kinase; ATP-b 77.8 1.2 4.2E-05 32.4 2.4 17 71-87 2-18 (223)
425 3cf2_A TER ATPase, transitiona 77.8 1.1 3.8E-05 39.5 2.4 19 69-87 238-256 (806)
426 2z0m_A 337AA long hypothetical 77.6 3.5 0.00012 31.2 5.1 52 99-158 219-274 (337)
427 2bbs_A Cystic fibrosis transme 77.6 1 3.5E-05 34.6 2.0 19 68-86 63-81 (290)
428 1tf5_A Preprotein translocase 77.5 6.1 0.00021 35.0 6.9 55 100-158 432-488 (844)
429 1r6b_X CLPA protein; AAA+, N-t 77.4 1.8 6.1E-05 37.6 3.6 19 69-87 207-225 (758)
430 2rep_A Kinesin-like protein KI 77.3 1.6 5.6E-05 34.9 3.1 24 63-86 108-133 (376)
431 3qks_A DNA double-strand break 77.2 1.3 4.5E-05 31.9 2.4 16 71-86 25-40 (203)
432 4fn4_A Short chain dehydrogena 77.2 20 0.00069 26.7 9.3 81 67-159 5-93 (254)
433 3b9q_A Chloroplast SRP recepto 77.0 1.2 4E-05 34.5 2.2 19 69-87 100-118 (302)
434 2jeo_A Uridine-cytidine kinase 77.0 1.1 3.7E-05 33.2 1.9 20 68-87 24-43 (245)
435 1jr3_A DNA polymerase III subu 76.9 2.6 8.9E-05 32.7 4.2 17 71-87 40-56 (373)
436 1vht_A Dephospho-COA kinase; s 76.8 1.3 4.6E-05 31.8 2.3 19 69-87 4-22 (218)
437 1fuu_A Yeast initiation factor 76.7 0.51 1.7E-05 37.0 0.0 56 99-158 258-317 (394)
438 1ltq_A Polynucleotide kinase; 76.6 1.3 4.5E-05 33.6 2.4 17 71-87 4-20 (301)
439 3tqf_A HPR(Ser) kinase; transf 76.6 1.6 5.4E-05 31.3 2.6 20 68-87 15-34 (181)
440 3pxi_A Negative regulator of g 76.5 2.1 7.1E-05 37.2 3.8 17 71-87 523-539 (758)
441 2j37_W Signal recognition part 76.5 14 0.00047 30.7 8.6 35 71-108 103-137 (504)
442 1zu4_A FTSY; GTPase, signal re 76.5 3.4 0.00012 32.1 4.7 36 69-107 105-140 (320)
443 2f1r_A Molybdopterin-guanine d 76.4 1.1 3.7E-05 31.6 1.7 17 71-87 4-20 (171)
444 3cmu_A Protein RECA, recombina 76.0 3.2 0.00011 40.3 5.1 37 68-107 1080-1116(2050)
445 2va8_A SSO2462, SKI2-type heli 76.0 7 0.00024 33.5 7.0 60 99-158 251-346 (715)
446 1odf_A YGR205W, hypothetical 3 76.0 1.4 4.8E-05 33.8 2.4 17 70-86 32-48 (290)
447 3fvq_A Fe(3+) IONS import ATP- 76.0 1.2 4E-05 35.5 2.0 19 68-86 29-47 (359)
448 1r6b_X CLPA protein; AAA+, N-t 75.9 2.3 7.7E-05 36.9 3.9 17 71-87 490-506 (758)
449 2vhj_A Ntpase P4, P4; non- hyd 75.9 1.9 6.5E-05 33.9 3.1 25 66-90 120-144 (331)
450 3sr0_A Adenylate kinase; phosp 75.8 1.6 5.3E-05 31.8 2.5 16 71-86 2-17 (206)
451 4a2p_A RIG-I, retinoic acid in 75.8 4.5 0.00015 33.1 5.6 79 79-158 370-461 (556)
452 3sop_A Neuronal-specific septi 75.7 1.3 4.5E-05 33.5 2.1 16 71-86 4-19 (270)
453 3aez_A Pantothenate kinase; tr 75.7 1.3 4.5E-05 34.3 2.1 19 68-86 89-107 (312)
454 2pjz_A Hypothetical protein ST 75.6 1.6 5.3E-05 33.1 2.5 18 69-86 30-47 (263)
455 1svm_A Large T antigen; AAA+ f 75.5 1.4 4.9E-05 35.2 2.4 19 68-86 168-186 (377)
456 3tqc_A Pantothenate kinase; bi 75.5 2.7 9.3E-05 32.8 3.9 16 71-86 94-109 (321)
457 3qkt_A DNA double-strand break 75.3 1.5 5.1E-05 34.3 2.4 17 71-87 25-41 (339)
458 3cmw_A Protein RECA, recombina 75.3 3.6 0.00012 39.3 5.2 38 68-108 33-70 (1706)
459 3gd7_A Fusion complex of cysti 74.7 1.3 4.5E-05 35.6 2.0 21 66-86 44-64 (390)
460 1tf7_A KAIC; homohexamer, hexa 74.6 4.2 0.00015 33.7 5.1 31 65-95 35-65 (525)
461 3vkg_A Dynein heavy chain, cyt 74.6 2.1 7.1E-05 43.4 3.6 24 62-85 1296-1320(3245)
462 1uj2_A Uridine-cytidine kinase 74.3 1.7 5.8E-05 32.2 2.4 17 71-87 24-40 (252)
463 2grj_A Dephospho-COA kinase; T 74.3 1.8 6E-05 31.1 2.4 18 70-87 13-30 (192)
464 1z47_A CYSA, putative ABC-tran 74.2 1.4 4.9E-05 34.9 2.0 20 67-86 39-58 (355)
465 2vp4_A Deoxynucleoside kinase; 74.2 1.6 5.4E-05 31.9 2.2 19 68-86 19-37 (230)
466 2yyz_A Sugar ABC transporter, 74.1 1.5 5E-05 34.9 2.1 19 68-86 28-46 (359)
467 4h1g_A Maltose binding protein 74.1 2.7 9.3E-05 36.4 3.9 25 62-86 454-480 (715)
468 2qen_A Walker-type ATPase; unk 74.1 2.6 8.9E-05 32.2 3.5 18 69-86 31-48 (350)
469 2onk_A Molybdate/tungstate ABC 74.1 1.7 5.9E-05 32.3 2.4 17 70-86 25-41 (240)
470 1qvr_A CLPB protein; coiled co 74.0 1.6 5.6E-05 38.5 2.5 17 71-87 590-606 (854)
471 3ake_A Cytidylate kinase; CMP 73.9 1.8 6.2E-05 30.6 2.4 17 71-87 4-20 (208)
472 1ypw_A Transitional endoplasmi 73.9 0.4 1.4E-05 42.3 -1.4 54 31-87 473-529 (806)
473 1sxj_B Activator 1 37 kDa subu 73.7 1.9 6.6E-05 32.6 2.6 17 71-87 44-60 (323)
474 2a5y_B CED-4; apoptosis; HET: 73.6 13 0.00044 30.8 7.9 18 70-87 153-170 (549)
475 2it1_A 362AA long hypothetical 73.6 1.5 5.2E-05 34.8 2.1 19 68-86 28-46 (362)
476 2oca_A DAR protein, ATP-depend 73.6 9.8 0.00033 31.0 7.0 58 100-161 347-408 (510)
477 1q3t_A Cytidylate kinase; nucl 73.6 2.1 7.1E-05 31.3 2.7 20 68-87 15-34 (236)
478 3cmw_A Protein RECA, recombina 73.5 3.5 0.00012 39.4 4.6 45 69-116 1431-1475(1706)
479 3rlf_A Maltose/maltodextrin im 73.5 1.5 5.3E-05 35.1 2.1 19 68-86 28-46 (381)
480 4a2q_A RIG-I, retinoic acid in 73.5 6.5 0.00022 34.3 6.2 79 79-158 611-702 (797)
481 1ko7_A HPR kinase/phosphatase; 73.2 12 0.00041 29.1 7.0 49 39-87 92-162 (314)
482 3rc3_A ATP-dependent RNA helic 73.1 7.4 0.00025 33.6 6.3 52 103-158 323-380 (677)
483 3umf_A Adenylate kinase; rossm 72.9 1.9 6.6E-05 31.6 2.3 19 68-86 28-46 (217)
484 3fho_A ATP-dependent RNA helic 72.9 0.64 2.2E-05 38.5 -0.4 56 99-158 356-415 (508)
485 1pui_A ENGB, probable GTP-bind 72.8 1.7 5.8E-05 30.8 2.0 19 68-86 25-43 (210)
486 1gtv_A TMK, thymidylate kinase 72.7 0.86 2.9E-05 32.6 0.4 16 71-86 2-17 (214)
487 1g29_1 MALK, maltose transport 72.7 1.6 5.6E-05 34.8 2.0 19 68-86 28-46 (372)
488 1v43_A Sugar-binding transport 72.6 1.7 5.7E-05 34.7 2.1 19 68-86 36-54 (372)
489 2f6r_A COA synthase, bifunctio 72.5 1.8 6.3E-05 32.8 2.2 18 70-87 76-93 (281)
490 2orv_A Thymidine kinase; TP4A 72.5 5.3 0.00018 29.7 4.7 40 69-111 19-58 (234)
491 3d31_A Sulfate/molybdate ABC t 72.4 1.4 4.7E-05 34.9 1.5 20 67-86 24-43 (348)
492 1qvr_A CLPB protein; coiled co 72.4 2.5 8.6E-05 37.3 3.4 19 69-87 191-209 (854)
493 3r20_A Cytidylate kinase; stru 72.1 2.1 7.1E-05 31.9 2.4 19 69-87 9-27 (233)
494 2og2_A Putative signal recogni 72.0 1.8 6.1E-05 34.4 2.1 19 69-87 157-175 (359)
495 2h92_A Cytidylate kinase; ross 72.0 2.5 8.5E-05 30.3 2.8 19 69-87 3-21 (219)
496 1sq5_A Pantothenate kinase; P- 71.9 1.8 6.1E-05 33.4 2.0 18 69-86 80-97 (308)
497 3bs4_A Uncharacterized protein 71.6 5.8 0.0002 30.0 4.8 53 68-124 20-72 (260)
498 4a2w_A RIG-I, retinoic acid in 71.6 11 0.00038 33.7 7.3 77 80-157 612-701 (936)
499 4a82_A Cystic fibrosis transme 71.5 1.8 6.1E-05 36.5 2.1 20 67-86 365-384 (578)
500 3e70_C DPA, signal recognition 71.5 1.9 6.5E-05 33.7 2.1 18 69-86 129-146 (328)
No 1
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=6.3e-32 Score=206.90 Aligned_cols=153 Identities=25% Similarity=0.406 Sum_probs=139.1
Q ss_pred cccccccccccccccccCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHhhhc--
Q psy9277 20 VEFETSEDVEVVSTFDNMGLREDLLRGIYAYGFEKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISILQSLDTQ-- 97 (178)
Q Consensus 20 ~~~~~~~~~~~~~~f~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~i~~g~~v~v~aptGsGKTl~~ll~il~~l~~~-- 97 (178)
+.+.....+.+..+|+++++++.+++++.+.||.+|+++|.++|+.+++|+|+++++|||||||++|++|++..+...
T Consensus 17 i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~ 96 (242)
T 3fe2_A 17 ITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPF 96 (242)
T ss_dssp EEEESSCCCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCC
T ss_pred eEEeCCCCCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccc
Confidence 444556678889999999999999999999999999999999999999999999999999999999999999988643
Q ss_pred ---CCCceEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccHHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCC
Q psy9277 98 ---LRETQVLCLSPTRELAVQIQKVVLALGDFMNVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRSSQGRR 172 (178)
Q Consensus 98 ---~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~~~~ 172 (178)
..++++||++||++|+.|+++.++.+....++++..++|+.+...+...+.++++|+|+||++|.+++.++....
T Consensus 97 ~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~ 174 (242)
T 3fe2_A 97 LERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNL 174 (242)
T ss_dssp CCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCC
T ss_pred cccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCc
Confidence 346789999999999999999999999888999999999999998888888889999999999999998776543
No 2
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.98 E-value=3.3e-31 Score=218.68 Aligned_cols=150 Identities=33% Similarity=0.465 Sum_probs=137.0
Q ss_pred cccccccccccccccCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHhhhcC---
Q psy9277 22 FETSEDVEVVSTFDNMGLREDLLRGIYAYGFEKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISILQSLDTQL--- 98 (178)
Q Consensus 22 ~~~~~~~~~~~~f~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~i~~g~~v~v~aptGsGKTl~~ll~il~~l~~~~--- 98 (178)
+...+.+.+..+|++++|++.++++|+++||.+|+++|.++||.+++|+|+++++|||||||++|++|+++.+....
T Consensus 46 ~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~ 125 (434)
T 2db3_A 46 VTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHEL 125 (434)
T ss_dssp EESSSCCCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCC
T ss_pred ecCCCCCCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhccccc
Confidence 34455567889999999999999999999999999999999999999999999999999999999999999887543
Q ss_pred --CCceEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccHHHHHHHhcCCCcEEEeChHHHHHHHHcCCCC
Q psy9277 99 --RETQVLCLSPTRELAVQIQKVVLALGDFMNVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRSSQGR 171 (178)
Q Consensus 99 --~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~~~ 171 (178)
.++++||++||++||.|+++.+++++...++++..++|+.+...+...+..+++|+|+||++|.+++.++...
T Consensus 126 ~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~ 200 (434)
T 2db3_A 126 ELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFIT 200 (434)
T ss_dssp CTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCC
T ss_pred ccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcc
Confidence 3579999999999999999999999988899999999999998888888889999999999999999877654
No 3
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.97 E-value=1.5e-30 Score=200.44 Aligned_cols=142 Identities=34% Similarity=0.550 Sum_probs=132.0
Q ss_pred ccccccccccCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEE
Q psy9277 27 DVEVVSTFDNMGLREDLLRGIYAYGFEKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCL 106 (178)
Q Consensus 27 ~~~~~~~f~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~i~~g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil 106 (178)
...+..+|+++++++.++++|+++||..|+++|.++++.+++|+++++++|||+|||++|++|+++.+.....+.+++|+
T Consensus 38 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil 117 (249)
T 3ber_A 38 EEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVL 117 (249)
T ss_dssp HHHHHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEE
T ss_pred cccccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEE
Confidence 34567889999999999999999999999999999999999999999999999999999999999998877667899999
Q ss_pred cCcHHHHHHHHHHHHHhccCCCceEEEEEcCccHHHHHHHhcCCCcEEEeChHHHHHHHHcC
Q psy9277 107 SPTRELAVQIQKVVLALGDFMNVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRSS 168 (178)
Q Consensus 107 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~ 168 (178)
+||++|+.|+++.++.+....++++..++|+.....+...+..+++|+|+||++|.+++.+.
T Consensus 118 ~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~ 179 (249)
T 3ber_A 118 TPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENT 179 (249)
T ss_dssp CSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHS
T ss_pred eCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcC
Confidence 99999999999999999988899999999999888877777788999999999999998863
No 4
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.97 E-value=8.8e-31 Score=200.03 Aligned_cols=151 Identities=64% Similarity=0.985 Sum_probs=121.5
Q ss_pred ccccccccccccccccCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCC
Q psy9277 21 EFETSEDVEVVSTFDNMGLREDLLRGIYAYGFEKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISILQSLDTQLRE 100 (178)
Q Consensus 21 ~~~~~~~~~~~~~f~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~i~~g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~ 100 (178)
....++.+++..+|++++++++++++|.++||..|+++|.++++.+++|+|+++++|||+|||++|++|+++.+.....+
T Consensus 19 ~~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~ 98 (237)
T 3bor_A 19 GVIESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKE 98 (237)
T ss_dssp --------CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCS
T ss_pred CcccCCCCCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCC
Confidence 33445567788999999999999999999999999999999999999999999999999999999999999988765567
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccHHHHHHHhcCC-CcEEEeChHHHHHHHHcCCCC
Q psy9277 101 TQVLCLSPTRELAVQIQKVVLALGDFMNVQCHACIGGTNLSEDLRKLDYG-QHVVSGTPGRVFDMIRSSQGR 171 (178)
Q Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~IlV~TP~~l~~~l~~~~~~ 171 (178)
.+++|++||++|+.|+++.++.++...++.+..++|+.....+...+..+ ++|+|+||++|.+++.++...
T Consensus 99 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~ 170 (237)
T 3bor_A 99 TQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLS 170 (237)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSC
T ss_pred ceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcC
Confidence 79999999999999999999999988889999999998877776666655 899999999999999876544
No 5
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.97 E-value=3.5e-30 Score=192.05 Aligned_cols=140 Identities=39% Similarity=0.726 Sum_probs=129.4
Q ss_pred cccccCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcCcHH
Q psy9277 32 STFDNMGLREDLLRGIYAYGFEKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSPTRE 111 (178)
Q Consensus 32 ~~f~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~i~~g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~Pt~~ 111 (178)
.+|++++++++++++|.++||.+|+++|.++++.+++|+|+++++|||+|||++|++|+++.+.....+.+++|++|+++
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 82 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRE 82 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHH
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHH
Confidence 57999999999999999999999999999999999999999999999999999999999998876666789999999999
Q ss_pred HHHHHHHHHHHhccCC-CceEEEEEcCccHHHHHHHhcCCCcEEEeChHHHHHHHHcCCCC
Q psy9277 112 LAVQIQKVVLALGDFM-NVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRSSQGR 171 (178)
Q Consensus 112 L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~~~ 171 (178)
|+.|+++.++.+.... ++++..+.|+....++...+..+++|+|+||++|.+++.++...
T Consensus 83 L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~ 143 (206)
T 1vec_A 83 LALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAK 143 (206)
T ss_dssp HHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcC
Confidence 9999999999998877 78899999999988887788888999999999999999876544
No 6
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.97 E-value=7.6e-31 Score=207.24 Aligned_cols=139 Identities=37% Similarity=0.654 Sum_probs=123.8
Q ss_pred ccccccccccCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHcC--CcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEE
Q psy9277 27 DVEVVSTFDNMGLREDLLRGIYAYGFEKPSAIQQRSIKPIVKG--RDVIAQAQSGTGKTATFSISILQSLDTQLRETQVL 104 (178)
Q Consensus 27 ~~~~~~~f~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~i~~g--~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~l 104 (178)
+.....+|++++|++.++++|.++||..|+++|.++||.++.| +|+++++|||||||++|++|+++.+.....++++|
T Consensus 87 p~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~l 166 (300)
T 3fmo_B 87 PLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCL 166 (300)
T ss_dssp CCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEE
T ss_pred CcCCcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEE
Confidence 3445789999999999999999999999999999999999997 99999999999999999999999998777778999
Q ss_pred EEcCcHHHHHHHHHHHHHhccCC-CceEEEEEcCccHHHHHHHhcCCCcEEEeChHHHHHHHHcC
Q psy9277 105 CLSPTRELAVQIQKVVLALGDFM-NVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRSS 168 (178)
Q Consensus 105 il~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~ 168 (178)
|++||++||.|+++.++.+.... ++.+..++|+...... ...+++|+||||++|++++.+.
T Consensus 167 il~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~IlV~TP~~l~~~l~~~ 228 (300)
T 3fmo_B 167 CLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKL 228 (300)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTT
T ss_pred EEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh---hcCCCCEEEECHHHHHHHHHhc
Confidence 99999999999999999998764 6888888888765432 2457899999999999999763
No 7
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.97 E-value=1.4e-30 Score=196.48 Aligned_cols=142 Identities=33% Similarity=0.551 Sum_probs=127.6
Q ss_pred cccccccCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcCc
Q psy9277 30 VVSTFDNMGLREDLLRGIYAYGFEKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSPT 109 (178)
Q Consensus 30 ~~~~f~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~i~~g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~Pt 109 (178)
+..+|++++++++++++++++||.+|+++|.++++.+++|+++++++|||+|||++|++|+++.+.....+.+++|++||
T Consensus 2 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt 81 (219)
T 1q0u_A 2 AETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPT 81 (219)
T ss_dssp --CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred CCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCc
Confidence 34689999999999999999999999999999999999999999999999999999999999998766667899999999
Q ss_pred HHHHHHHHHHHHHhccCC----CceEEEEEcCccHHHHHHHhcCCCcEEEeChHHHHHHHHcCCCC
Q psy9277 110 RELAVQIQKVVLALGDFM----NVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRSSQGR 171 (178)
Q Consensus 110 ~~L~~q~~~~~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~~~ 171 (178)
++|+.|+++.++++.... ++.+..++|+.+.......+..+++|+|+||++|.+++.++...
T Consensus 82 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~ 147 (219)
T 1q0u_A 82 RELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALD 147 (219)
T ss_dssp HHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCC
Confidence 999999999999998776 78888899998877666666668999999999999999876554
No 8
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.97 E-value=3.1e-30 Score=195.51 Aligned_cols=149 Identities=28% Similarity=0.436 Sum_probs=126.4
Q ss_pred cccccccccccccc-CCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHhhhc----
Q psy9277 23 ETSEDVEVVSTFDN-MGLREDLLRGIYAYGFEKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISILQSLDTQ---- 97 (178)
Q Consensus 23 ~~~~~~~~~~~f~~-~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~i~~g~~v~v~aptGsGKTl~~ll~il~~l~~~---- 97 (178)
+....+++..+|++ ++++++++++|.+.||.+|+++|.++++.+++|+|+++++|||+|||++|++|++..+...
T Consensus 10 ~~~~~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~ 89 (228)
T 3iuy_A 10 EKRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISR 89 (228)
T ss_dssp SCCCCCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC------
T ss_pred ccCcCCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchh
Confidence 34456788899999 8999999999999999999999999999999999999999999999999999999887532
Q ss_pred --CCCceEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccHHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCC
Q psy9277 98 --LRETQVLCLSPTRELAVQIQKVVLALGDFMNVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRSSQGRR 172 (178)
Q Consensus 98 --~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~~~~ 172 (178)
..+++++|++||++|+.|+++.++.+. ..++++..++|+.....+...+.++++|+|+||++|.+++.+.....
T Consensus 90 ~~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~ 165 (228)
T 3iuy_A 90 EQRNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNL 165 (228)
T ss_dssp ---CCCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCC
T ss_pred hccCCCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCc
Confidence 256789999999999999999999986 45888999999998888777788889999999999999988776543
No 9
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.97 E-value=2.4e-30 Score=199.09 Aligned_cols=145 Identities=32% Similarity=0.521 Sum_probs=131.6
Q ss_pred cccccccccCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHhhhcC---------
Q psy9277 28 VEVVSTFDNMGLREDLLRGIYAYGFEKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISILQSLDTQL--------- 98 (178)
Q Consensus 28 ~~~~~~f~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~i~~g~~v~v~aptGsGKTl~~ll~il~~l~~~~--------- 98 (178)
.++..+|+++++++.++++|.++||..|+++|.++++.+++|+|+++++|||+|||++|++|+++.+....
T Consensus 19 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~ 98 (253)
T 1wrb_A 19 TNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKT 98 (253)
T ss_dssp CSCCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CC
T ss_pred CCccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhcccccccccc
Confidence 34788999999999999999999999999999999999999999999999999999999999999886432
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccHHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCC
Q psy9277 99 RETQVLCLSPTRELAVQIQKVVLALGDFMNVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRSSQGRR 172 (178)
Q Consensus 99 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~~~~ 172 (178)
.++++||++||++|+.|+++.++.+....++++..++|+.....+...+..+++|+|+||++|.+++.++...+
T Consensus 99 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~ 172 (253)
T 1wrb_A 99 AYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISL 172 (253)
T ss_dssp BCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCC
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCCh
Confidence 24689999999999999999999998888899999999998888878888889999999999999998776543
No 10
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.97 E-value=1.1e-29 Score=192.95 Aligned_cols=144 Identities=42% Similarity=0.606 Sum_probs=126.9
Q ss_pred ccccccccccCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEE
Q psy9277 27 DVEVVSTFDNMGLREDLLRGIYAYGFEKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCL 106 (178)
Q Consensus 27 ~~~~~~~f~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~i~~g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil 106 (178)
.+.+..+|++++++++++++|++.||..|+++|.++++.+++|+|+++++|||+|||++|++|+++.+.....+.++||+
T Consensus 19 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil 98 (230)
T 2oxc_A 19 LLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILIL 98 (230)
T ss_dssp -----CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEE
T ss_pred CCCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEE
Confidence 34567889999999999999999999999999999999999999999999999999999999999988766667899999
Q ss_pred cCcHHHHHHHHHHHHHhccCC-CceEEEEEcCccHHHHHHHhcCCCcEEEeChHHHHHHHHcCCCC
Q psy9277 107 SPTRELAVQIQKVVLALGDFM-NVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRSSQGR 171 (178)
Q Consensus 107 ~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~~~ 171 (178)
+|+++|+.|+++.++.+.... ++++..+.|+....++...+. +++|+|+||++|.+++.++...
T Consensus 99 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~Iiv~Tp~~l~~~~~~~~~~ 163 (230)
T 2oxc_A 99 APTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLK-KCHIAVGSPGRIKQLIELDYLN 163 (230)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTT-SCSEEEECHHHHHHHHHTTSSC
T ss_pred eCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhcc-CCCEEEECHHHHHHHHhcCCcc
Confidence 999999999999999998765 889999999998877766554 7999999999999999876544
No 11
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.97 E-value=1.3e-29 Score=206.60 Aligned_cols=158 Identities=80% Similarity=1.207 Sum_probs=142.8
Q ss_pred CCCCCCcccccccccccccccccCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHH
Q psy9277 14 PEDLSNVEFETSEDVEVVSTFDNMGLREDLLRGIYAYGFEKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISILQS 93 (178)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~f~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~i~~g~~v~v~aptGsGKTl~~ll~il~~ 93 (178)
..+......+.++++++..+|+++++++.++++|.+.||..|+++|.++++.+++|+++++++|||+|||++|++|+++.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~ 98 (410)
T 2j0s_A 19 EEDMTKVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQC 98 (410)
T ss_dssp -CCSSSCCCCCCTTCCCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred cccCcccccCCCCCccCCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHH
Confidence 34556666777777788899999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhcCCCceEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccHHHHHHHhcCCCcEEEeChHHHHHHHHcCCCC
Q psy9277 94 LDTQLRETQVLCLSPTRELAVQIQKVVLALGDFMNVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRSSQGR 171 (178)
Q Consensus 94 l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~~~ 171 (178)
+.....+.++||++|+++|+.|+++.++.+....++++..+.|+.....+...+..+++|+|+||++|.+++.++...
T Consensus 99 l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~ 176 (410)
T 2j0s_A 99 LDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLR 176 (410)
T ss_dssp CCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSC
T ss_pred HhhccCCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCcc
Confidence 765556789999999999999999999999988899999999999998888888788999999999999999876544
No 12
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.97 E-value=1.5e-29 Score=191.03 Aligned_cols=144 Identities=59% Similarity=0.908 Sum_probs=123.2
Q ss_pred ccccccccccCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEE
Q psy9277 27 DVEVVSTFDNMGLREDLLRGIYAYGFEKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCL 106 (178)
Q Consensus 27 ~~~~~~~f~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~i~~g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil 106 (178)
..++..+|+++++++.+++.+.+.||..|+++|.++++.+++|+++++++|||+|||++|++|+++.+.....+.+++|+
T Consensus 9 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil 88 (224)
T 1qde_A 9 YDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALML 88 (224)
T ss_dssp CCCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEE
T ss_pred cCcccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEE
Confidence 44567889999999999999999999999999999999999999999999999999999999999998776677899999
Q ss_pred cCcHHHHHHHHHHHHHhccCCCceEEEEEcCccHHHHHHHhcCCCcEEEeChHHHHHHHHcCCCC
Q psy9277 107 SPTRELAVQIQKVVLALGDFMNVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRSSQGR 171 (178)
Q Consensus 107 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~~~ 171 (178)
+|+++|+.|+++.++.+....++++..+.|+....++...+.+ ++|+|+||++|.+++.++...
T Consensus 89 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~~~~ 152 (224)
T 1qde_A 89 APTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRRRFR 152 (224)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTT-CSEEEECHHHHHHHHHTTSSC
T ss_pred ECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHhCCcc
Confidence 9999999999999999998889999999999887776655554 899999999999999876544
No 13
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.97 E-value=2e-29 Score=205.48 Aligned_cols=151 Identities=30% Similarity=0.461 Sum_probs=135.6
Q ss_pred ccccccccccccccccCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCC-
Q psy9277 21 EFETSEDVEVVSTFDNMGLREDLLRGIYAYGFEKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISILQSLDTQLR- 99 (178)
Q Consensus 21 ~~~~~~~~~~~~~f~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~i~~g~~v~v~aptGsGKTl~~ll~il~~l~~~~~- 99 (178)
.......+.+..+|++++|++.++++|..+||..|+++|.++|+.++.|+|+++++|||+|||++|++|+++.+.....
T Consensus 4 ~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~ 83 (417)
T 2i4i_A 4 EATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPG 83 (417)
T ss_dssp EEESTTCCCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCC
T ss_pred ccCCCcCCcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhcccc
Confidence 3344455677889999999999999999999999999999999999999999999999999999999999998765322
Q ss_pred -----------------CceEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccHHHHHHHhcCCCcEEEeChHHHH
Q psy9277 100 -----------------ETQVLCLSPTRELAVQIQKVVLALGDFMNVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVF 162 (178)
Q Consensus 100 -----------------~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~TP~~l~ 162 (178)
++++||++||++|+.|+++.++.+....++++..++|+.....+...+..+++|+|+||++|.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~ 163 (417)
T 2i4i_A 84 EALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLV 163 (417)
T ss_dssp HHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHH
T ss_pred chhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHH
Confidence 268999999999999999999999988899999999999998888888888999999999999
Q ss_pred HHHHcCCCC
Q psy9277 163 DMIRSSQGR 171 (178)
Q Consensus 163 ~~l~~~~~~ 171 (178)
+++.++...
T Consensus 164 ~~l~~~~~~ 172 (417)
T 2i4i_A 164 DMMERGKIG 172 (417)
T ss_dssp HHHHTTSBC
T ss_pred HHHHcCCcC
Confidence 999876543
No 14
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.97 E-value=9.2e-29 Score=188.31 Aligned_cols=140 Identities=28% Similarity=0.502 Sum_probs=124.6
Q ss_pred cccccccccCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHhhhc----CCCceE
Q psy9277 28 VEVVSTFDNMGLREDLLRGIYAYGFEKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISILQSLDTQ----LRETQV 103 (178)
Q Consensus 28 ~~~~~~f~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~i~~g~~v~v~aptGsGKTl~~ll~il~~l~~~----~~~~~~ 103 (178)
..+..+|+++++++.++++|.+.||..|+++|.++++.+++|+++++++|||+|||++|++|+++.+... ..+.++
T Consensus 21 ~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~ 100 (236)
T 2pl3_A 21 VNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGV 100 (236)
T ss_dssp GGGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCE
T ss_pred CcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceE
Confidence 4567889999999999999999999999999999999999999999999999999999999999987642 245789
Q ss_pred EEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccHHHHHHHhcCCCcEEEeChHHHHHHHHcC
Q psy9277 104 LCLSPTRELAVQIQKVVLALGDFMNVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRSS 168 (178)
Q Consensus 104 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~ 168 (178)
+|++||++|+.|+++.++.+....++++..++|+.....+...+ .+++|+|+||++|.+++.+.
T Consensus 101 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~ 164 (236)
T 2pl3_A 101 LIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDET 164 (236)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHC
T ss_pred EEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhc
Confidence 99999999999999999999988889999999998877665555 47899999999999998765
No 15
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.97 E-value=3.6e-29 Score=193.97 Aligned_cols=140 Identities=34% Similarity=0.550 Sum_probs=124.3
Q ss_pred cccccccCC--CCHHHHHHHHhCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHhhhc----CCCceE
Q psy9277 30 VVSTFDNMG--LREDLLRGIYAYGFEKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISILQSLDTQ----LRETQV 103 (178)
Q Consensus 30 ~~~~f~~~~--l~~~i~~~l~~~g~~~~~~~Q~~~i~~i~~g~~v~v~aptGsGKTl~~ll~il~~l~~~----~~~~~~ 103 (178)
...+|++++ +++.++++|+++||..|+++|.++++.++.|+|+++++|||||||++|++|+++.+... ..+.++
T Consensus 50 ~~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~ 129 (262)
T 3ly5_A 50 EDTSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGV 129 (262)
T ss_dssp GGGCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCE
T ss_pred ccCChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceE
Confidence 355677777 99999999999999999999999999999999999999999999999999999988652 245689
Q ss_pred EEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccHHHHHHHhcCCCcEEEeChHHHHHHHHcCC
Q psy9277 104 LCLSPTRELAVQIQKVVLALGDFMNVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRSSQ 169 (178)
Q Consensus 104 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~ 169 (178)
+|++||++||.|+++.+++++...++.+..++|+.....+...+..+++|+|+||+++.+++.+..
T Consensus 130 lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~ 195 (262)
T 3ly5_A 130 LILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTP 195 (262)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCT
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccC
Confidence 999999999999999999999988999999999999888888777789999999999999987754
No 16
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.97 E-value=6.3e-29 Score=187.24 Aligned_cols=144 Identities=38% Similarity=0.571 Sum_probs=126.4
Q ss_pred cccccccccCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEc
Q psy9277 28 VEVVSTFDNMGLREDLLRGIYAYGFEKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLS 107 (178)
Q Consensus 28 ~~~~~~f~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~i~~g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~ 107 (178)
.....+|++++|++.++++|.+.||..|+++|.++++.+++|+++++++|||+|||++|++|++..+.....+.+++|++
T Consensus 10 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 89 (220)
T 1t6n_A 10 SIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC 89 (220)
T ss_dssp ----CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEEC
T ss_pred cccCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEe
Confidence 34456799999999999999999999999999999999999999999999999999999999999876655566999999
Q ss_pred CcHHHHHHHHHHHHHhccCC-CceEEEEEcCccHHHHHHHhcC-CCcEEEeChHHHHHHHHcCCCC
Q psy9277 108 PTRELAVQIQKVVLALGDFM-NVQCHACIGGTNLSEDLRKLDY-GQHVVSGTPGRVFDMIRSSQGR 171 (178)
Q Consensus 108 Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~-~~~IlV~TP~~l~~~l~~~~~~ 171 (178)
|+++|+.|+++.++++.... ++++..+.|+.....+...+.. .++|+|+||++|.+++++....
T Consensus 90 Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~ 155 (220)
T 1t6n_A 90 HTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLN 155 (220)
T ss_dssp SCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSC
T ss_pred CCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCC
Confidence 99999999999999998776 7899999999888777666654 4799999999999999876544
No 17
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.96 E-value=3.7e-29 Score=191.47 Aligned_cols=150 Identities=27% Similarity=0.472 Sum_probs=127.8
Q ss_pred cccccccccccccccccC----CCCHHHHHHHHhCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHhh
Q psy9277 20 VEFETSEDVEVVSTFDNM----GLREDLLRGIYAYGFEKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISILQSLD 95 (178)
Q Consensus 20 ~~~~~~~~~~~~~~f~~~----~l~~~i~~~l~~~g~~~~~~~Q~~~i~~i~~g~~v~v~aptGsGKTl~~ll~il~~l~ 95 (178)
+.+...+.+.+..+|+++ ++++++++++.+.||..|+++|.++++.+++|+++++++|||+|||++|++|+++.+.
T Consensus 13 i~~~~~~~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~ 92 (245)
T 3dkp_A 13 IHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLK 92 (245)
T ss_dssp EEEESSSCCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC
T ss_pred eEecCCCCCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHh
Confidence 344555677888999987 8999999999999999999999999999999999999999999999999999999886
Q ss_pred hc-CCCceEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccHHHHHH-HhcCCCcEEEeChHHHHHHHHcCC
Q psy9277 96 TQ-LRETQVLCLSPTRELAVQIQKVVLALGDFMNVQCHACIGGTNLSEDLR-KLDYGQHVVSGTPGRVFDMIRSSQ 169 (178)
Q Consensus 96 ~~-~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~IlV~TP~~l~~~l~~~~ 169 (178)
.. ..+.+++|++||++|+.|+++.++++....++++..+.|+........ ....+++|+|+||++|.+++.+..
T Consensus 93 ~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~ 168 (245)
T 3dkp_A 93 QPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDP 168 (245)
T ss_dssp SCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSS
T ss_pred hcccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCC
Confidence 42 345689999999999999999999999988888887776654433221 223578999999999999998763
No 18
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.96 E-value=2.6e-28 Score=181.89 Aligned_cols=137 Identities=32% Similarity=0.551 Sum_probs=123.0
Q ss_pred ccccCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHhhhc---CCCceEEEEcCc
Q psy9277 33 TFDNMGLREDLLRGIYAYGFEKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISILQSLDTQ---LRETQVLCLSPT 109 (178)
Q Consensus 33 ~f~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~i~~g~~v~v~aptGsGKTl~~ll~il~~l~~~---~~~~~~lil~Pt 109 (178)
+|+++++++++++++.+.||..|+++|.++++.+++|+++++++|||+|||++|++|+++.+... ..+++++|++|+
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~ 81 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPT 81 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSS
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECC
Confidence 69999999999999999999999999999999999999999999999999999999999987542 346789999999
Q ss_pred HHHHHHHHHHHHHhccCCCceEEEEEcCccHHHHHHHhcCCCcEEEeChHHHHHHHHcCCCC
Q psy9277 110 RELAVQIQKVVLALGDFMNVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRSSQGR 171 (178)
Q Consensus 110 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~~~ 171 (178)
++|+.|+++.++.+... +++..++|+.....+...+..+++|+|+||+++.+++.++...
T Consensus 82 ~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~ 141 (207)
T 2gxq_A 82 RELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLD 141 (207)
T ss_dssp HHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcc
Confidence 99999999999998764 6778888998877776777778999999999999999876544
No 19
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.95 E-value=3.2e-27 Score=192.13 Aligned_cols=153 Identities=62% Similarity=0.948 Sum_probs=136.6
Q ss_pred cccccccccccccccccCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCC
Q psy9277 20 VEFETSEDVEVVSTFDNMGLREDLLRGIYAYGFEKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISILQSLDTQLR 99 (178)
Q Consensus 20 ~~~~~~~~~~~~~~f~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~i~~g~~v~v~aptGsGKTl~~ll~il~~l~~~~~ 99 (178)
.....+.+.+...+|+++++++.+++.|.+.||..|+++|.++++.+++|+++++++|||+|||++|++|+++.+.....
T Consensus 28 ~~~~~~~~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~ 107 (414)
T 3eiq_A 28 EGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLK 107 (414)
T ss_dssp --CCCCCCCCCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSC
T ss_pred ccccCCCccchhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCC
Confidence 34445566778899999999999999999999999999999999999999999999999999999999999998876666
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccHHHHHHHhc-CCCcEEEeChHHHHHHHHcCCCCC
Q psy9277 100 ETQVLCLSPTRELAVQIQKVVLALGDFMNVQCHACIGGTNLSEDLRKLD-YGQHVVSGTPGRVFDMIRSSQGRR 172 (178)
Q Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~IlV~TP~~l~~~l~~~~~~~ 172 (178)
+.+++|++|+++|+.|+++.++.++...+..+..++|+.....+...+. .+++|+|+||++|.+++.++....
T Consensus 108 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~ 181 (414)
T 3eiq_A 108 ATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSP 181 (414)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCS
T ss_pred ceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccc
Confidence 7899999999999999999999999888999999999998887777666 578999999999999998765543
No 20
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.95 E-value=9.4e-27 Score=188.91 Aligned_cols=142 Identities=42% Similarity=0.729 Sum_probs=129.4
Q ss_pred cccccccCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcCc
Q psy9277 30 VVSTFDNMGLREDLLRGIYAYGFEKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSPT 109 (178)
Q Consensus 30 ~~~~f~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~i~~g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~Pt 109 (178)
...+|++++|++.++++|.+.||..|+++|.++++.+++|+++++++|||+|||++|++|++..+.....+.+++|++|+
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 98 (400)
T 1s2m_A 19 KGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPT 98 (400)
T ss_dssp --CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred ccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCC
Confidence 45689999999999999999999999999999999999999999999999999999999999988765566799999999
Q ss_pred HHHHHHHHHHHHHhccCCCceEEEEEcCccHHHHHHHhcCCCcEEEeChHHHHHHHHcCCCC
Q psy9277 110 RELAVQIQKVVLALGDFMNVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRSSQGR 171 (178)
Q Consensus 110 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~~~ 171 (178)
++|+.|+++.++.+....++++..+.|+.....+...+..+++|+|+||++|.+++.+....
T Consensus 99 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~ 160 (400)
T 1s2m_A 99 RELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVAD 160 (400)
T ss_dssp HHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcc
Confidence 99999999999999988899999999999988877777778999999999999998876543
No 21
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.94 E-value=2.9e-26 Score=185.20 Aligned_cols=141 Identities=38% Similarity=0.597 Sum_probs=125.5
Q ss_pred ccccccCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcCcH
Q psy9277 31 VSTFDNMGLREDLLRGIYAYGFEKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSPTR 110 (178)
Q Consensus 31 ~~~f~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~i~~g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~Pt~ 110 (178)
..+|+++++++.++++|.++||..|+++|.++++.+++|+++++.+|||+|||++|++|++..+.....+.++||++|++
T Consensus 7 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~ 86 (391)
T 1xti_A 7 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTR 86 (391)
T ss_dssp --CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCH
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCH
Confidence 35799999999999999999999999999999999999999999999999999999999999876655567999999999
Q ss_pred HHHHHHHHHHHHhccCC-CceEEEEEcCccHHHHHHHhcC-CCcEEEeChHHHHHHHHcCCCC
Q psy9277 111 ELAVQIQKVVLALGDFM-NVQCHACIGGTNLSEDLRKLDY-GQHVVSGTPGRVFDMIRSSQGR 171 (178)
Q Consensus 111 ~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~-~~~IlV~TP~~l~~~l~~~~~~ 171 (178)
+|+.|+++.++++.... ++++..+.|+.........+.. .++|+|+||++|.+++.+....
T Consensus 87 ~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~ 149 (391)
T 1xti_A 87 ELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLN 149 (391)
T ss_dssp HHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcc
Confidence 99999999999998776 7899999999888777666654 4799999999999998876543
No 22
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.94 E-value=2.2e-26 Score=185.94 Aligned_cols=142 Identities=60% Similarity=0.941 Sum_probs=128.8
Q ss_pred ccccccccCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcC
Q psy9277 29 EVVSTFDNMGLREDLLRGIYAYGFEKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSP 108 (178)
Q Consensus 29 ~~~~~f~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~i~~g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~P 108 (178)
+...+|+++++++.++++|.+.||..|+++|.++++.+++|+++++++|||+|||++|++|+++.+.....+++++|++|
T Consensus 18 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P 97 (394)
T 1fuu_A 18 KVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAP 97 (394)
T ss_dssp CCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECS
T ss_pred cccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcC
Confidence 44578999999999999999999999999999999999999999999999999999999999998876666789999999
Q ss_pred cHHHHHHHHHHHHHhccCCCceEEEEEcCccHHHHHHHhcCCCcEEEeChHHHHHHHHcCCCC
Q psy9277 109 TRELAVQIQKVVLALGDFMNVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRSSQGR 171 (178)
Q Consensus 109 t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~~~ 171 (178)
+++|+.|+++.+..+....++++..+.|+....+....+. +++|+|+||++|.+.+.++...
T Consensus 98 ~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~ 159 (394)
T 1fuu_A 98 TRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFR 159 (394)
T ss_dssp SHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSC
T ss_pred CHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcc
Confidence 9999999999999999888999999999998877665554 6899999999999999876543
No 23
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.94 E-value=9.2e-26 Score=183.25 Aligned_cols=143 Identities=36% Similarity=0.645 Sum_probs=124.0
Q ss_pred ccccccccccccccCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHcC--CcEEEEcCCCChHHHHHHHHHHHHhhhcCCC
Q psy9277 23 ETSEDVEVVSTFDNMGLREDLLRGIYAYGFEKPSAIQQRSIKPIVKG--RDVIAQAQSGTGKTATFSISILQSLDTQLRE 100 (178)
Q Consensus 23 ~~~~~~~~~~~f~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~i~~g--~~v~v~aptGsGKTl~~ll~il~~l~~~~~~ 100 (178)
....+.....+|+++++++.++++|.+.||..|+++|.++++.++++ +++++++|||+|||++|++|+++.+.....+
T Consensus 16 ~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~ 95 (412)
T 3fht_A 16 DPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKY 95 (412)
T ss_dssp CTTSTTCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCS
T ss_pred cCCCCccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCC
Confidence 34445566889999999999999999999999999999999999997 9999999999999999999999998776677
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhccCC-CceEEEEEcCccHHHHHHHhcCCCcEEEeChHHHHHHHHcC
Q psy9277 101 TQVLCLSPTRELAVQIQKVVLALGDFM-NVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRSS 168 (178)
Q Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~ 168 (178)
++++|++|+++|+.|+++.++++.... ++.+....++...... ...+++|+|+||++|.+++.+.
T Consensus 96 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~T~~~l~~~~~~~ 161 (412)
T 3fht_A 96 PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKL 161 (412)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT---CCCCCSEEEECHHHHHHHHTTS
T ss_pred CCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh---hcCCCCEEEECchHHHHHHHhc
Confidence 799999999999999999999998764 6777777777655422 2346799999999999999653
No 24
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.94 E-value=5.6e-26 Score=189.07 Aligned_cols=138 Identities=37% Similarity=0.660 Sum_probs=119.8
Q ss_pred ccccccccCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHcC--CcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEE
Q psy9277 29 EVVSTFDNMGLREDLLRGIYAYGFEKPSAIQQRSIKPIVKG--RDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCL 106 (178)
Q Consensus 29 ~~~~~f~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~i~~g--~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil 106 (178)
.+..+|++++|++.++++|.++||..|+++|.++++.++++ ++++++||||||||++|++|+++.+.....++++||+
T Consensus 89 ~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil 168 (479)
T 3fmp_B 89 YSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCL 168 (479)
T ss_dssp CCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEE
T ss_pred cCcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEE
Confidence 34678999999999999999999999999999999999997 9999999999999999999999988776667799999
Q ss_pred cCcHHHHHHHHHHHHHhccCC-CceEEEEEcCccHHHHHHHhcCCCcEEEeChHHHHHHHHcCC
Q psy9277 107 SPTRELAVQIQKVVLALGDFM-NVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRSSQ 169 (178)
Q Consensus 107 ~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~ 169 (178)
+|+++|+.|+++.++.+.... ++.+....++...... ...+++|+|+||++|.+++.+..
T Consensus 169 ~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~l~~~~ 229 (479)
T 3fmp_B 169 SPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLK 229 (479)
T ss_dssp CSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSC
T ss_pred eChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchHHHHHHHhcC
Confidence 999999999999999987754 5777777777654322 13467999999999999997643
No 25
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.94 E-value=1.3e-25 Score=181.09 Aligned_cols=138 Identities=38% Similarity=0.693 Sum_probs=122.1
Q ss_pred cccccccCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHcC--CcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEc
Q psy9277 30 VVSTFDNMGLREDLLRGIYAYGFEKPSAIQQRSIKPIVKG--RDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLS 107 (178)
Q Consensus 30 ~~~~f~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~i~~g--~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~ 107 (178)
...+|++++|+++++++|.+.||..|+++|.++++.++++ +++++++|||+|||++|++|++..+.....+.+++|++
T Consensus 3 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 82 (395)
T 3pey_A 3 MAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLA 82 (395)
T ss_dssp -CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEEC
T ss_pred cccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEEC
Confidence 4689999999999999999999999999999999999998 99999999999999999999999887666678999999
Q ss_pred CcHHHHHHHHHHHHHhccCCCceEEEEEcCccHHHHHHHhcCCCcEEEeChHHHHHHHHcCCCC
Q psy9277 108 PTRELAVQIQKVVLALGDFMNVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRSSQGR 171 (178)
Q Consensus 108 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~~~ 171 (178)
|+++|+.|+++.++.+....++.+....++...... ..+++|+|+||++|.+++.+....
T Consensus 83 P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~~~~~~~~ 142 (395)
T 3pey_A 83 PSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLMRRKLMQ 142 (395)
T ss_dssp SSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTS----CBCCSEEEECHHHHHHHHHTTCBC
T ss_pred CCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhc----cCCCCEEEEcHHHHHHHHHcCCcc
Confidence 999999999999999998888888888777544321 236899999999999999876543
No 26
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.93 E-value=1.1e-24 Score=174.20 Aligned_cols=139 Identities=31% Similarity=0.584 Sum_probs=124.5
Q ss_pred ccccccCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHcC-CcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcCc
Q psy9277 31 VSTFDNMGLREDLLRGIYAYGFEKPSAIQQRSIKPIVKG-RDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSPT 109 (178)
Q Consensus 31 ~~~f~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~i~~g-~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~Pt 109 (178)
..+|++++|++.++++|++.||..|+++|.++++.++++ +++++.+|||+|||++|++|++..+... .+.+++|++|+
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~-~~~~~lil~P~ 83 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN-NGIEAIILTPT 83 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS-SSCCEEEECSC
T ss_pred cCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhccc-CCCcEEEEcCC
Confidence 357999999999999999999999999999999999988 7999999999999999999999876543 45699999999
Q ss_pred HHHHHHHHHHHHHhccCCCceEEEEEcCccHHHHHHHhcCCCcEEEeChHHHHHHHHcCCCC
Q psy9277 110 RELAVQIQKVVLALGDFMNVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRSSQGR 171 (178)
Q Consensus 110 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~~~ 171 (178)
++|+.|+++.+..+....++.+..+.|+.....+...+. +++|+|+||++|.+++.++...
T Consensus 84 ~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~ 144 (367)
T 1hv8_A 84 RELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLN 144 (367)
T ss_dssp HHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcc
Confidence 999999999999998888899999999998877766655 6899999999999999876544
No 27
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.93 E-value=4.2e-25 Score=188.02 Aligned_cols=138 Identities=33% Similarity=0.570 Sum_probs=118.0
Q ss_pred cccccccCC----CCHHHHHHHHhCCCCCCcHHHHHHHHHHH--cCCcEEEEcCCCChHHHHHHHHHHHHhhhcC----C
Q psy9277 30 VVSTFDNMG----LREDLLRGIYAYGFEKPSAIQQRSIKPIV--KGRDVIAQAQSGTGKTATFSISILQSLDTQL----R 99 (178)
Q Consensus 30 ~~~~f~~~~----l~~~i~~~l~~~g~~~~~~~Q~~~i~~i~--~g~~v~v~aptGsGKTl~~ll~il~~l~~~~----~ 99 (178)
...+|+++. |+++++++|.++||..|+++|.++++.++ .++++++++|||+|||++|++|+++.+.... .
T Consensus 15 ~~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~ 94 (579)
T 3sqw_A 15 KEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQY 94 (579)
T ss_dssp CCCCHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTT
T ss_pred CCcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccC
Confidence 344555554 99999999999999999999999999999 7899999999999999999999999886642 2
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhcc----CCCceEEEEEcCccHHHHHHHhc-CCCcEEEeChHHHHHHHHc
Q psy9277 100 ETQVLCLSPTRELAVQIQKVVLALGD----FMNVQCHACIGGTNLSEDLRKLD-YGQHVVSGTPGRVFDMIRS 167 (178)
Q Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~-~~~~IlV~TP~~l~~~l~~ 167 (178)
++++|||+||++|+.|+++.++.+.. ...+.+..++|+.....+...+. .+++|+|+||++|.+++.+
T Consensus 95 ~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~ 167 (579)
T 3sqw_A 95 MVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEK 167 (579)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHH
T ss_pred CCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHh
Confidence 46899999999999999999988753 23567888899988887766664 3789999999999998865
No 28
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.92 E-value=7e-25 Score=185.64 Aligned_cols=138 Identities=33% Similarity=0.569 Sum_probs=117.1
Q ss_pred ccccccCC----CCHHHHHHHHhCCCCCCcHHHHHHHHHHH--cCCcEEEEcCCCChHHHHHHHHHHHHhhhcC----CC
Q psy9277 31 VSTFDNMG----LREDLLRGIYAYGFEKPSAIQQRSIKPIV--KGRDVIAQAQSGTGKTATFSISILQSLDTQL----RE 100 (178)
Q Consensus 31 ~~~f~~~~----l~~~i~~~l~~~g~~~~~~~Q~~~i~~i~--~g~~v~v~aptGsGKTl~~ll~il~~l~~~~----~~ 100 (178)
..+|+++. |++++++++.++||..|+++|.++++.++ .++|++++||||+|||++|++|+++.+.... .+
T Consensus 67 ~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~ 146 (563)
T 3i5x_A 67 EVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYM 146 (563)
T ss_dssp CCCHHHHHHTTSSCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTS
T ss_pred CcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCC
Confidence 44565554 99999999999999999999999999999 6789999999999999999999999987643 23
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHhccC----CCceEEEEEcCccHHHHHHHhc-CCCcEEEeChHHHHHHHHcC
Q psy9277 101 TQVLCLSPTRELAVQIQKVVLALGDF----MNVQCHACIGGTNLSEDLRKLD-YGQHVVSGTPGRVFDMIRSS 168 (178)
Q Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~-~~~~IlV~TP~~l~~~l~~~ 168 (178)
+++|||+||++||.|+++.++.+... ....+..++|+.....+...+. .+++|+|+||++|.+++.+.
T Consensus 147 ~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~ 219 (563)
T 3i5x_A 147 VKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKY 219 (563)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHH
T ss_pred eeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhc
Confidence 58999999999999999999887542 2466888899988877766653 47899999999999988653
No 29
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.92 E-value=8.7e-24 Score=167.23 Aligned_cols=126 Identities=27% Similarity=0.562 Sum_probs=114.7
Q ss_pred CCHHHHHHHHhCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcCcHHHHHHHHH
Q psy9277 39 LREDLLRGIYAYGFEKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSPTRELAVQIQK 118 (178)
Q Consensus 39 l~~~i~~~l~~~g~~~~~~~Q~~~i~~i~~g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~Pt~~L~~q~~~ 118 (178)
|++++.++|+++||..|+++|.++++.+++++++++.+|||+|||++|++|+++. +.+++|++|+++|+.|+++
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~------~~~~liv~P~~~L~~q~~~ 74 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL------GMKSLVVTPTRELTRQVAS 74 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH------TCCEEEECSSHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh------cCCEEEEeCCHHHHHHHHH
Confidence 6789999999999999999999999999999999999999999999999999873 5689999999999999999
Q ss_pred HHHHhccCCCceEEEEEcCccHHHHHHHhcCCCcEEEeChHHHHHHHHcCCCC
Q psy9277 119 VVLALGDFMNVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRSSQGR 171 (178)
Q Consensus 119 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~~~ 171 (178)
.++++....++++..++|+.....+...+. .++|+|+||++|.+++.+....
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~ 126 (337)
T 2z0m_A 75 HIRDIGRYMDTKVAEVYGGMPYKAQINRVR-NADIVVATPGRLLDLWSKGVID 126 (337)
T ss_dssp HHHHHTTTSCCCEEEECTTSCHHHHHHHHT-TCSEEEECHHHHHHHHHTTSCC
T ss_pred HHHHHhhhcCCcEEEEECCcchHHHHhhcC-CCCEEEECHHHHHHHHHcCCcc
Confidence 999999888999999999998887766655 4899999999999998876544
No 30
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.90 E-value=2.8e-23 Score=169.73 Aligned_cols=121 Identities=18% Similarity=0.139 Sum_probs=103.8
Q ss_pred HHHHHHHh-CCCCCCcHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcCcHHHHHHHHHHH
Q psy9277 42 DLLRGIYA-YGFEKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSPTRELAVQIQKVV 120 (178)
Q Consensus 42 ~i~~~l~~-~g~~~~~~~Q~~~i~~i~~g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~Pt~~L~~q~~~~~ 120 (178)
++.+.+++ .|| +|+++|.++++.+++|+|+++++|||+|||++|+++++..+ ..+++++|++||++|+.|+++.+
T Consensus 9 ~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~---~~~~~~lil~Pt~~L~~q~~~~~ 84 (414)
T 3oiy_A 9 DFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA---RKGKKSALVFPTVTLVKQTLERL 84 (414)
T ss_dssp HHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHH---TTTCCEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHh---cCCCEEEEEECCHHHHHHHHHHH
Confidence 34455544 466 79999999999999999999999999999999999988865 35679999999999999999999
Q ss_pred HHhccCCCceEEEEEcCccH---HHHHHHhcCC-CcEEEeChHHHHHHHHc
Q psy9277 121 LALGDFMNVQCHACIGGTNL---SEDLRKLDYG-QHVVSGTPGRVFDMIRS 167 (178)
Q Consensus 121 ~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~-~~IlV~TP~~l~~~l~~ 167 (178)
+.++. .++++..++|+.+. ..+...+..+ ++|+|+||++|.+++..
T Consensus 85 ~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~ 134 (414)
T 3oiy_A 85 QKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK 134 (414)
T ss_dssp HHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH
T ss_pred HHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH
Confidence 99988 88999999999988 4455555555 89999999999887764
No 31
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.88 E-value=5.2e-23 Score=172.76 Aligned_cols=140 Identities=28% Similarity=0.470 Sum_probs=96.5
Q ss_pred ccccccccCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHcC--CcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEE
Q psy9277 29 EVVSTFDNMGLREDLLRGIYAYGFEKPSAIQQRSIKPIVKG--RDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCL 106 (178)
Q Consensus 29 ~~~~~f~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~i~~g--~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil 106 (178)
.....|...++++++++.+.+.||..|+++|.++++.++++ +++++++|||||||++|+++++..+.....++++||+
T Consensus 116 ~~l~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl 195 (508)
T 3fho_A 116 XXXXXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICL 195 (508)
T ss_dssp -----------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEE
T ss_pred cccccccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEE
Confidence 34455677789999999999999999999999999999998 9999999999999999999999998776667799999
Q ss_pred cCcHHHHHHHHHHHHHhccCCCceEEEEEcCccHHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCC
Q psy9277 107 SPTRELAVQIQKVVLALGDFMNVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRSSQGRR 172 (178)
Q Consensus 107 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~~~~ 172 (178)
+|+++|+.|+++.++.++...++.+....++...... ..+++|+|+||++|.+++.++....
T Consensus 196 ~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ivv~T~~~l~~~l~~~~~~~ 257 (508)
T 3fho_A 196 APSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKGA----KIDAQIVIGTPGTVMDLMKRRQLDA 257 (508)
T ss_dssp CSCHHHHHHHHHHHHHHSTTSSCCEEC--------------CCCCSEEEECHHHHHHHHHTTCSCC
T ss_pred ECcHHHHHHHHHHHHHhCCccCeeEEEEeCCcccccc----cCCCCEEEECHHHHHHHHHcCCccc
Confidence 9999999999999999988777777666655543322 3368999999999999988766543
No 32
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.88 E-value=2.4e-22 Score=173.73 Aligned_cols=127 Identities=17% Similarity=0.152 Sum_probs=106.9
Q ss_pred HHHHHhCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCC--CceEEEEcCcHHHHHHHHHHHH
Q psy9277 44 LRGIYAYGFEKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISILQSLDTQLR--ETQVLCLSPTRELAVQIQKVVL 121 (178)
Q Consensus 44 ~~~l~~~g~~~~~~~Q~~~i~~i~~g~~v~v~aptGsGKTl~~ll~il~~l~~~~~--~~~~lil~Pt~~L~~q~~~~~~ 121 (178)
.+++..+||..|+++|.++++.+++|+|+++++|||+|||++|++|+++.+..... +.++||++||++|+.|+++.++
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~ 82 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFS 82 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999998765432 2689999999999999999999
Q ss_pred HhccCCCceEEEEEcCccHHHHHHHhcCCCcEEEeChHHHHHHHHcCCC
Q psy9277 122 ALGDFMNVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRSSQG 170 (178)
Q Consensus 122 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~~ 170 (178)
+++...++++..++|+.....+...+..+++|+|+||++|.+++.++.+
T Consensus 83 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~ 131 (696)
T 2ykg_A 83 KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTI 131 (696)
T ss_dssp HHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSS
T ss_pred HHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcc
Confidence 9998889999999998865544445555799999999999999987765
No 33
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.88 E-value=2.5e-22 Score=174.51 Aligned_cols=134 Identities=15% Similarity=0.247 Sum_probs=116.2
Q ss_pred cccccccCCCCHHHHHHHHhCCCCCCcHHHHHHHHH-HHcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcC
Q psy9277 30 VVSTFDNMGLREDLLRGIYAYGFEKPSAIQQRSIKP-IVKGRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSP 108 (178)
Q Consensus 30 ~~~~f~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~-i~~g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~P 108 (178)
...+|++++|++++.+.+++.||..|+++|.++++. +.+++++++++|||||||++|.+++++.+.. .+.+++|++|
T Consensus 6 ~~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~--~~~~il~i~P 83 (715)
T 2va8_A 6 EWMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLK--NGGKAIYVTP 83 (715)
T ss_dssp CCCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHH--SCSEEEEECS
T ss_pred ccCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHH--CCCeEEEEeC
Confidence 346799999999999999999999999999999999 7889999999999999999999999988764 3569999999
Q ss_pred cHHHHHHHHHHHHHhccCCCceEEEEEcCccHHHHHHHhcCCCcEEEeChHHHHHHHHcCC
Q psy9277 109 TRELAVQIQKVVLALGDFMNVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRSSQ 169 (178)
Q Consensus 109 t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~ 169 (178)
+++||.|+++.++.+ ...|+++...+|+....+. .+ .+++|+|+||+++..++++..
T Consensus 84 ~r~La~q~~~~~~~~-~~~g~~v~~~~G~~~~~~~--~~-~~~~Iiv~Tpe~l~~~~~~~~ 140 (715)
T 2va8_A 84 LRALTNEKYLTFKDW-ELIGFKVAMTSGDYDTDDA--WL-KNYDIIITTYEKLDSLWRHRP 140 (715)
T ss_dssp CHHHHHHHHHHHGGG-GGGTCCEEECCSCSSSCCG--GG-GGCSEEEECHHHHHHHHHHCC
T ss_pred cHHHHHHHHHHHHHh-hcCCCEEEEEeCCCCCchh--hc-CCCCEEEEcHHHHHHHHhCCh
Confidence 999999999999655 3458899999988766543 12 368999999999999988754
No 34
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.88 E-value=1.8e-22 Score=175.71 Aligned_cols=133 Identities=15% Similarity=0.251 Sum_probs=115.5
Q ss_pred cccccCCCCHHHHHHHHhCCCCCCcHHHHHHHHH-HHcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcCcH
Q psy9277 32 STFDNMGLREDLLRGIYAYGFEKPSAIQQRSIKP-IVKGRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSPTR 110 (178)
Q Consensus 32 ~~f~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~-i~~g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~Pt~ 110 (178)
.+|++++|++++.+.+++.||..|+++|.++++. +.+++++++++|||||||++|.+++++.+... +.+++|++|++
T Consensus 1 ~~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--~~~~l~i~P~r 78 (720)
T 2zj8_A 1 MRVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ--GGKAVYIVPLK 78 (720)
T ss_dssp CBGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH--CSEEEEECSSG
T ss_pred CcHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC--CCEEEEEcCcH
Confidence 3699999999999999999999999999999998 88899999999999999999999999887643 56999999999
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEEcCccHHHHHHHhcCCCcEEEeChHHHHHHHHcCCC
Q psy9277 111 ELAVQIQKVVLALGDFMNVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRSSQG 170 (178)
Q Consensus 111 ~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~~ 170 (178)
+|+.|+++.++.+.. .++++..++|+...+.. ....++|+|+||+++..++++...
T Consensus 79 aLa~q~~~~~~~l~~-~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~~ 134 (720)
T 2zj8_A 79 ALAEEKFQEFQDWEK-IGLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRHGSS 134 (720)
T ss_dssp GGHHHHHHHTGGGGG-GTCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHh-cCCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHcChh
Confidence 999999999975543 48899999998765432 123689999999999999887543
No 35
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.87 E-value=5e-22 Score=166.97 Aligned_cols=120 Identities=14% Similarity=0.144 Sum_probs=101.0
Q ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCC--CceEEEEcCcHHHHHHHHHHHHHhccCCC
Q psy9277 51 GFEKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISILQSLDTQLR--ETQVLCLSPTRELAVQIQKVVLALGDFMN 128 (178)
Q Consensus 51 g~~~~~~~Q~~~i~~i~~g~~v~v~aptGsGKTl~~ll~il~~l~~~~~--~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 128 (178)
+..+|+++|.++++.+++|+++++++|||+|||++|++|+++.+..... +.++||++|+++|+.|+++.++.++...+
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 83 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQG 83 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGT
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccC
Confidence 4457999999999999999999999999999999999999998876432 67899999999999999999999998889
Q ss_pred ceEEEEEcCccHHHHHHHhcCCCcEEEeChHHHHHHHHcCCC
Q psy9277 129 VQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRSSQG 170 (178)
Q Consensus 129 ~~~~~~~g~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~~ 170 (178)
+++..++|+.....+...+..+++|+|+||++|.+++.++..
T Consensus 84 ~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~ 125 (556)
T 4a2p_A 84 YSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTL 125 (556)
T ss_dssp CCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSC
T ss_pred ceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcc
Confidence 999999999977766666666799999999999999988765
No 36
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.87 E-value=9.2e-22 Score=165.07 Aligned_cols=117 Identities=18% Similarity=0.150 Sum_probs=105.2
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCC--CceEEEEcCcHHHHHHHHHHHHHhccCCCceE
Q psy9277 54 KPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISILQSLDTQLR--ETQVLCLSPTRELAVQIQKVVLALGDFMNVQC 131 (178)
Q Consensus 54 ~~~~~Q~~~i~~i~~g~~v~v~aptGsGKTl~~ll~il~~l~~~~~--~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~ 131 (178)
+|+++|.++++.++.|+++++++|||+|||++|++|+++.+..... +.++||++|+++|+.|+++.++.++...++++
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~ 83 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYNI 83 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCE
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcEE
Confidence 6999999999999999999999999999999999999998876432 67899999999999999999999998889999
Q ss_pred EEEEcCccHHHHHHHhcCCCcEEEeChHHHHHHHHcCCC
Q psy9277 132 HACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRSSQG 170 (178)
Q Consensus 132 ~~~~g~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~~ 170 (178)
..++|+.....+...+..+++|+|+||++|.+++.++..
T Consensus 84 ~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~ 122 (555)
T 3tbk_A 84 ASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAI 122 (555)
T ss_dssp EEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSS
T ss_pred EEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcc
Confidence 999999977665555556799999999999999988765
No 37
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.86 E-value=1.8e-21 Score=166.17 Aligned_cols=119 Identities=14% Similarity=0.195 Sum_probs=104.2
Q ss_pred cccCCCCHHHHHHHHh-CCCCCCcHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcCcHHH
Q psy9277 34 FDNMGLREDLLRGIYA-YGFEKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSPTREL 112 (178)
Q Consensus 34 f~~~~l~~~i~~~l~~-~g~~~~~~~Q~~~i~~i~~g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~Pt~~L 112 (178)
+.++++++.+.+.|++ +||..|+++|.++|+.+++|+|+++.+|||+|||++|++|++. ...++|||+|+++|
T Consensus 23 ~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~------~~g~~lVisP~~~L 96 (591)
T 2v1x_A 23 KEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALC------SDGFTLVICPLISL 96 (591)
T ss_dssp CSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHT------SSSEEEEECSCHHH
T ss_pred cccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHH------cCCcEEEEeCHHHH
Confidence 3458899999999987 6999999999999999999999999999999999999999986 34699999999999
Q ss_pred HHHHHHHHHHhccCCCceEEEEEcCccHHHHHHHh------cCCCcEEEeChHHHH
Q psy9277 113 AVQIQKVVLALGDFMNVQCHACIGGTNLSEDLRKL------DYGQHVVSGTPGRVF 162 (178)
Q Consensus 113 ~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~------~~~~~IlV~TP~~l~ 162 (178)
+.|+++.+..+ ++.+..+.|+....+....+ ..+++|+|+||++|.
T Consensus 97 ~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~ 148 (591)
T 2v1x_A 97 MEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIA 148 (591)
T ss_dssp HHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHH
T ss_pred HHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhh
Confidence 99999999887 78888889888776554332 346899999999874
No 38
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.86 E-value=2e-21 Score=163.73 Aligned_cols=121 Identities=17% Similarity=0.229 Sum_probs=106.0
Q ss_pred cccccCCCCHHHHHHHHh-CCCCCCcHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcCcH
Q psy9277 32 STFDNMGLREDLLRGIYA-YGFEKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSPTR 110 (178)
Q Consensus 32 ~~f~~~~l~~~i~~~l~~-~g~~~~~~~Q~~~i~~i~~g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~Pt~ 110 (178)
..|++++|++.+.+.|++ +||..|+++|.++|+.+++|+|+++++|||+|||++|++|++. ....+||++|++
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~------~~g~~lvi~P~~ 75 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALL------LNGLTVVVSPLI 75 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHH------SSSEEEEECSCH
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHH------hCCCEEEECChH
Confidence 579999999999999987 8999999999999999999999999999999999999999985 245899999999
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEEcCccHHHHHHH----hcCCCcEEEeChHHHH
Q psy9277 111 ELAVQIQKVVLALGDFMNVQCHACIGGTNLSEDLRK----LDYGQHVVSGTPGRVF 162 (178)
Q Consensus 111 ~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~IlV~TP~~l~ 162 (178)
+|+.|+++.++.+ ++.+..+.++....+.... ....++|+++||++|.
T Consensus 76 aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~ 127 (523)
T 1oyw_A 76 SLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLM 127 (523)
T ss_dssp HHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHT
T ss_pred HHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh
Confidence 9999999999876 7788888888776654322 2346899999999984
No 39
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.86 E-value=2.3e-21 Score=170.49 Aligned_cols=122 Identities=15% Similarity=0.163 Sum_probs=102.5
Q ss_pred hCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCC--CceEEEEcCcHHHHHHHHHHHHHhccC
Q psy9277 49 AYGFEKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISILQSLDTQLR--ETQVLCLSPTRELAVQIQKVVLALGDF 126 (178)
Q Consensus 49 ~~g~~~~~~~Q~~~i~~i~~g~~v~v~aptGsGKTl~~ll~il~~l~~~~~--~~~~lil~Pt~~L~~q~~~~~~~~~~~ 126 (178)
-+|+..|+++|.++++.++.|+++++++|||+|||++|++|+++.+..... +.++|||+|+++|+.|+++.++.++..
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~ 322 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 322 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhccc
Confidence 457889999999999999999999999999999999999999998876432 679999999999999999999999888
Q ss_pred CCceEEEEEcCccHHHHHHHhcCCCcEEEeChHHHHHHHHcCCC
Q psy9277 127 MNVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRSSQG 170 (178)
Q Consensus 127 ~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~~ 170 (178)
.++++..++|+.....+...+..+++|+|+||++|.+++.++.+
T Consensus 323 ~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~ 366 (797)
T 4a2q_A 323 QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTL 366 (797)
T ss_dssp GTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSC
T ss_pred CCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccc
Confidence 89999999999987776666667899999999999999987766
No 40
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.86 E-value=1.7e-22 Score=175.42 Aligned_cols=130 Identities=12% Similarity=0.189 Sum_probs=111.3
Q ss_pred ccccCC--CCHHHHHHHHhCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcCcH
Q psy9277 33 TFDNMG--LREDLLRGIYAYGFEKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSPTR 110 (178)
Q Consensus 33 ~f~~~~--l~~~i~~~l~~~g~~~~~~~Q~~~i~~i~~g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~Pt~ 110 (178)
+|++++ |++++.+.+++.||.+|+++|.++++.+.+++++++++|||||||++|.+++++.+.. +.+++|++|++
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~---~~~~l~i~P~r 78 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK---GGKSLYVVPLR 78 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT---TCCEEEEESSH
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh---CCcEEEEeCcH
Confidence 688999 9999999999999999999999999999999999999999999999999999988763 56999999999
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEEcCccHHHHHHHhcCCCcEEEeChHHHHHHHHcCC
Q psy9277 111 ELAVQIQKVVLALGDFMNVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRSSQ 169 (178)
Q Consensus 111 ~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~ 169 (178)
+|+.|+++.++.+ ...|+++..++|+....+. ...+++|+|+||+++..++++..
T Consensus 79 ~La~q~~~~~~~~-~~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~ 133 (702)
T 2p6r_A 79 ALAGEKYESFKKW-EKIGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRA 133 (702)
T ss_dssp HHHHHHHHHHTTT-TTTTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHH-HhcCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcCh
Confidence 9999999999655 3458999999998765432 12368999999999999988754
No 41
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.86 E-value=3.5e-21 Score=173.84 Aligned_cols=115 Identities=17% Similarity=0.120 Sum_probs=101.9
Q ss_pred HhCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcCcHHHHHHHHHHHHHhccCC
Q psy9277 48 YAYGFEKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSPTRELAVQIQKVVLALGDFM 127 (178)
Q Consensus 48 ~~~g~~~~~~~Q~~~i~~i~~g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 127 (178)
...|| +||++|.++++.+++|+|++++||||||||++|+++++..+ ..+.++||++||++||.|+++.++.++ ..
T Consensus 73 ~~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~---~~~~~~Lil~PtreLa~Q~~~~l~~l~-~~ 147 (1104)
T 4ddu_A 73 KKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA---RKGKKSALVFPTVTLVKQTLERLQKLA-DE 147 (1104)
T ss_dssp HHSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHH---TTTCCEEEEESSHHHHHHHHHHHHTTS-CT
T ss_pred HhcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHH---hcCCeEEEEechHHHHHHHHHHHHHhh-CC
Confidence 35788 59999999999999999999999999999999998888876 356799999999999999999999987 77
Q ss_pred CceEEEEEcCccH---HHHHHHhcCC-CcEEEeChHHHHHHHHc
Q psy9277 128 NVQCHACIGGTNL---SEDLRKLDYG-QHVVSGTPGRVFDMIRS 167 (178)
Q Consensus 128 ~~~~~~~~g~~~~---~~~~~~~~~~-~~IlV~TP~~l~~~l~~ 167 (178)
++++..++|+.+. ..+...+..+ ++|+|+||++|.+++..
T Consensus 148 ~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~ 191 (1104)
T 4ddu_A 148 KVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK 191 (1104)
T ss_dssp TSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH
T ss_pred CCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh
Confidence 8999999999987 5666667666 99999999999887653
No 42
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.86 E-value=5.3e-22 Score=184.90 Aligned_cols=124 Identities=16% Similarity=0.267 Sum_probs=102.6
Q ss_pred CCHHHHHHHHhCCCCCCcHHHHHHHHHHHc-CCcEEEEcCCCChHHHHHHHHHHHHhhhc--------CCCceEEEEcCc
Q psy9277 39 LREDLLRGIYAYGFEKPSAIQQRSIKPIVK-GRDVIAQAQSGTGKTATFSISILQSLDTQ--------LRETQVLCLSPT 109 (178)
Q Consensus 39 l~~~i~~~l~~~g~~~~~~~Q~~~i~~i~~-g~~v~v~aptGsGKTl~~ll~il~~l~~~--------~~~~~~lil~Pt 109 (178)
|+++...++ .||++++++|++++|.++. ++|++++||||||||++|.+++++.+... ..+.++||++|+
T Consensus 66 Lp~~~~~~f--~g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~ 143 (1724)
T 4f92_B 66 LPKYAQAGF--EGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPM 143 (1724)
T ss_dssp SCGGGSTTC--TTCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSS
T ss_pred cCHHHHHhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCH
Confidence 444444443 2799999999999999875 89999999999999999999999998652 235689999999
Q ss_pred HHHHHHHHHHHHHhccCCCceEEEEEcCccHHHHHHHhcCCCcEEEeChHHHHHHHHc
Q psy9277 110 RELAVQIQKVVLALGDFMNVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRS 167 (178)
Q Consensus 110 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~ 167 (178)
++||.|+++.+.+.+...|+++..++|+.+...+ ...+++|+|+|||++..++++
T Consensus 144 kALa~e~~~~l~~~~~~~gi~V~~~tGd~~~~~~---~~~~~~IlVtTpEkld~llr~ 198 (1724)
T 4f92_B 144 RSLVQEMVGSFGKRLATYGITVAELTGDHQLCKE---EISATQIIVCTPEKWDIITRK 198 (1724)
T ss_dssp HHHHHHHHHHHHHHHTTTTCCEEECCSSCSSCCT---TGGGCSEEEECHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHhhCCCEEEEEECCCCCCcc---ccCCCCEEEECHHHHHHHHcC
Confidence 9999999999998888899999999999876432 123689999999998555544
No 43
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.85 E-value=3.9e-21 Score=167.15 Aligned_cols=112 Identities=19% Similarity=0.263 Sum_probs=99.0
Q ss_pred hCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcCcHHHHHHHHHHHHHhccCCC
Q psy9277 49 AYGFEKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSPTRELAVQIQKVVLALGDFMN 128 (178)
Q Consensus 49 ~~g~~~~~~~Q~~~i~~i~~g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 128 (178)
.+|| +|+++|..++|.++.|+ +..++||+|||++|.+|++.... .+..++||+||++||.|.++.+..+++.+|
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL---~g~~vlVltptreLA~qd~e~~~~l~~~lg 152 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNAL---TGKGVHVVTVNEYLASRDAEQMGKIFEFLG 152 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHT---TSSCEEEEESSHHHHHHHHHHHHHHHHHTT
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHH---cCCCEEEEeCCHHHHHHHHHHHHHHHhhcC
Confidence 5799 89999999999999999 99999999999999999985433 356899999999999999999999999999
Q ss_pred ceEEEEEcCccHHHHHHHhcCCCcEEEeChHHH-HHHHHcC
Q psy9277 129 VQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRV-FDMIRSS 168 (178)
Q Consensus 129 ~~~~~~~g~~~~~~~~~~~~~~~~IlV~TP~~l-~~~l~~~ 168 (178)
+++.+++||.+...+.. ..+|||+||||++| .|+|+..
T Consensus 153 l~v~~i~gg~~~~~r~~--~~~~dIv~gTpgrlgfD~L~D~ 191 (844)
T 1tf5_A 153 LTVGLNLNSMSKDEKRE--AYAADITYSTNNELGFDYLRDN 191 (844)
T ss_dssp CCEEECCTTSCHHHHHH--HHHSSEEEEEHHHHHHHHHHHT
T ss_pred CeEEEEeCCCCHHHHHH--hcCCCEEEECchhhhHHHHHHh
Confidence 99999999998765533 34799999999999 7777654
No 44
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.84 E-value=1.5e-20 Score=175.28 Aligned_cols=127 Identities=22% Similarity=0.269 Sum_probs=108.7
Q ss_pred CCHHHHHHHHhCCCCCCcHHHHHHHHHHHc-CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcCcHHHHHHHH
Q psy9277 39 LREDLLRGIYAYGFEKPSAIQQRSIKPIVK-GRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSPTRELAVQIQ 117 (178)
Q Consensus 39 l~~~i~~~l~~~g~~~~~~~Q~~~i~~i~~-g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~Pt~~L~~q~~ 117 (178)
|++...+++...+|..++|+|+++|+.++. +.|++++||||||||++|.+|+++.+... .+.++||++|+++||.|++
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~-~~~kavyi~P~raLa~q~~ 989 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQS-SEGRCVYITPMEALAEQVY 989 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHC-TTCCEEEECSCHHHHHHHH
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhC-CCCEEEEEcChHHHHHHHH
Confidence 667888888888999999999999999986 67999999999999999999999988764 4568999999999999999
Q ss_pred HHHHH-hccCCCceEEEEEcCccHHHHHHHhcCCCcEEEeChHHHHHHHHcCC
Q psy9277 118 KVVLA-LGDFMNVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRSSQ 169 (178)
Q Consensus 118 ~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~ 169 (178)
+.+.+ +....|+++..++|+...+.... .+++|+|+|||++..++++..
T Consensus 990 ~~~~~~f~~~~g~~V~~ltGd~~~~~~~~---~~~~IiV~TPEkld~llr~~~ 1039 (1724)
T 4f92_B 990 MDWYEKFQDRLNKKVVLLTGETSTDLKLL---GKGNIIISTPEKWDILSRRWK 1039 (1724)
T ss_dssp HHHHHHHTTTSCCCEEECCSCHHHHHHHH---HHCSEEEECHHHHHHHHTTTT
T ss_pred HHHHHHhchhcCCEEEEEECCCCcchhhc---CCCCEEEECHHHHHHHHhCcc
Confidence 99864 66678999999999877654422 357999999999987777543
No 45
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.84 E-value=9.8e-21 Score=170.51 Aligned_cols=117 Identities=21% Similarity=0.219 Sum_probs=102.4
Q ss_pred HHH-HhCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcCcHHHHHHHHHHHHHh
Q psy9277 45 RGI-YAYGFEKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSPTRELAVQIQKVVLAL 123 (178)
Q Consensus 45 ~~l-~~~g~~~~~~~Q~~~i~~i~~g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 123 (178)
+.+ +.+||. | ++|.++|+.+++|+|++++||||||||+ |.+|++..+.. .++++||++||++||.|+++.++.+
T Consensus 48 ~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~--~~~~~lil~PtreLa~Q~~~~l~~l 122 (1054)
T 1gku_B 48 EFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL--KGKRCYVIFPTSLLVIQAAETIRKY 122 (1054)
T ss_dssp HHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT--TSCCEEEEESCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh--cCCeEEEEeccHHHHHHHHHHHHHH
Confidence 444 458999 9 9999999999999999999999999998 88888887764 5679999999999999999999999
Q ss_pred ccCCCc----eEEEEEcCccHHHH---HHHhcCCCcEEEeChHHHHHHHHc
Q psy9277 124 GDFMNV----QCHACIGGTNLSED---LRKLDYGQHVVSGTPGRVFDMIRS 167 (178)
Q Consensus 124 ~~~~~~----~~~~~~g~~~~~~~---~~~~~~~~~IlV~TP~~l~~~l~~ 167 (178)
+...++ ++..++|+.+...+ ...+.+ ++|+|+||++|++++.+
T Consensus 123 ~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~ 172 (1054)
T 1gku_B 123 AEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE 172 (1054)
T ss_dssp HTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT
T ss_pred HhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH
Confidence 988888 89999999887763 344455 99999999999998765
No 46
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.83 E-value=1.7e-20 Score=167.30 Aligned_cols=122 Identities=15% Similarity=0.163 Sum_probs=100.8
Q ss_pred hCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCC--CceEEEEcCcHHHHHHHHHHHHHhccC
Q psy9277 49 AYGFEKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISILQSLDTQLR--ETQVLCLSPTRELAVQIQKVVLALGDF 126 (178)
Q Consensus 49 ~~g~~~~~~~Q~~~i~~i~~g~~v~v~aptGsGKTl~~ll~il~~l~~~~~--~~~~lil~Pt~~L~~q~~~~~~~~~~~ 126 (178)
-.|+..|+++|.++++.+++|+++++++|||+|||++|++|+++.+..... +.++|||+|+++|+.|+++.++.++..
T Consensus 243 l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~ 322 (936)
T 4a2w_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 322 (936)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 346778999999999999999999999999999999999999987765421 568999999999999999999999888
Q ss_pred CCceEEEEEcCccHHHHHHHhcCCCcEEEeChHHHHHHHHcCCC
Q psy9277 127 MNVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRSSQG 170 (178)
Q Consensus 127 ~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~~ 170 (178)
.++++..++|+.+...+...+..+++|+|+||++|.+++.++.+
T Consensus 323 ~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~ 366 (936)
T 4a2w_A 323 QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTL 366 (936)
T ss_dssp TTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSC
T ss_pred cCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCcc
Confidence 89999999999877665555555789999999999999987665
No 47
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.83 E-value=2.1e-20 Score=162.45 Aligned_cols=113 Identities=19% Similarity=0.236 Sum_probs=98.9
Q ss_pred hCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcCcHHHHHHHHHHHHHhccCCC
Q psy9277 49 AYGFEKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSPTRELAVQIQKVVLALGDFMN 128 (178)
Q Consensus 49 ~~g~~~~~~~Q~~~i~~i~~g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 128 (178)
.+|. +|+++|..+++.++.|+ +..++||+|||++|++|++.... .+.+++||+||++||.|+++.+..+++.++
T Consensus 70 ~lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l---~g~~vlVltPTreLA~Q~~e~~~~l~~~lg 143 (853)
T 2fsf_A 70 VFGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNAL---TGKGVHVVTVNDYLAQRDAENNRPLFEFLG 143 (853)
T ss_dssp HHSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHT---TSSCCEEEESSHHHHHHHHHHHHHHHHHTT
T ss_pred HcCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHH---cCCcEEEEcCCHHHHHHHHHHHHHHHHhcC
Confidence 3565 79999999999999998 99999999999999999986543 356899999999999999999999999999
Q ss_pred ceEEEEEcCccHHHHHHHhcCCCcEEEeChHHH-HHHHHcCC
Q psy9277 129 VQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRV-FDMIRSSQ 169 (178)
Q Consensus 129 ~~~~~~~g~~~~~~~~~~~~~~~~IlV~TP~~l-~~~l~~~~ 169 (178)
+++.+++||.+...+ .+..++||+||||++| .|+|+.+.
T Consensus 144 l~v~~i~GG~~~~~r--~~~~~~dIvvgTpgrl~fDyLrd~~ 183 (853)
T 2fsf_A 144 LTVGINLPGMPAPAK--REAYAADITYGTNNEYGFDYLRDNM 183 (853)
T ss_dssp CCEEECCTTCCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTT
T ss_pred CeEEEEeCCCCHHHH--HHhcCCCEEEECCchhhHHHHHhhh
Confidence 999999999987544 3334799999999999 79988653
No 48
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.82 E-value=2.6e-20 Score=138.89 Aligned_cols=119 Identities=16% Similarity=0.131 Sum_probs=93.7
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHhhhc---CCCceEEEEcCcHHHHHH-HHHHHHHhcc
Q psy9277 50 YGFEKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISILQSLDTQ---LRETQVLCLSPTRELAVQ-IQKVVLALGD 125 (178)
Q Consensus 50 ~g~~~~~~~Q~~~i~~i~~g~~v~v~aptGsGKTl~~ll~il~~l~~~---~~~~~~lil~Pt~~L~~q-~~~~~~~~~~ 125 (178)
.+...|+++|.++++.+++++++++.+|||+|||++|++++++.+... ..+.+++|++|+++|+.| ..+.+..+..
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~ 108 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLK 108 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHT
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhc
Confidence 344579999999999999999999999999999999999998876542 235689999999999999 6777888765
Q ss_pred CCCceEEEEEcCccHHHHHHHhcCCCcEEEeChHHHHHHHHcCC
Q psy9277 126 FMNVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRSSQ 169 (178)
Q Consensus 126 ~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~ 169 (178)
. ++++..+.|+.........+..+++|+|+||++|.+++....
T Consensus 109 ~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~ 151 (216)
T 3b6e_A 109 K-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLE 151 (216)
T ss_dssp T-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC--
T ss_pred c-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccC
Confidence 5 678888888765544333333468999999999999988653
No 49
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.82 E-value=5.4e-20 Score=166.18 Aligned_cols=126 Identities=20% Similarity=0.174 Sum_probs=108.2
Q ss_pred ccccccCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcCcH
Q psy9277 31 VSTFDNMGLREDLLRGIYAYGFEKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSPTR 110 (178)
Q Consensus 31 ~~~f~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~i~~g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~Pt~ 110 (178)
...|..+++++.+...+...++..|+++|.++++.+.+|++++++||||||||++|.+|++..+. .+.+++|++|++
T Consensus 161 ~~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~---~g~rvlvl~Ptr 237 (1108)
T 3l9o_A 161 PPNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK---NKQRVIYTSPIK 237 (1108)
T ss_dssp SSCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHH---TTCEEEEEESSH
T ss_pred CCCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHh---cCCeEEEEcCcH
Confidence 45677788888887777666777899999999999999999999999999999999999998874 467999999999
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEEcCccHHHHHHHhcCCCcEEEeChHHHHHHHHcCCC
Q psy9277 111 ELAVQIQKVVLALGDFMNVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRSSQG 170 (178)
Q Consensus 111 ~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~~ 170 (178)
+|+.|+++.+..+.. .+..++|+.+. ..+++|+|+||++|.+++.++..
T Consensus 238 aLa~Q~~~~l~~~~~----~VglltGd~~~-------~~~~~IlV~Tpe~L~~~L~~~~~ 286 (1108)
T 3l9o_A 238 ALSNQKYRELLAEFG----DVGLMTGDITI-------NPDAGCLVMTTEILRSMLYRGSE 286 (1108)
T ss_dssp HHHHHHHHHHHHHTS----SEEEECSSCBC-------CCSCSEEEEEHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHhC----CccEEeCcccc-------CCCCCEEEeChHHHHHHHHcCcc
Confidence 999999999988765 46667887763 34689999999999999887643
No 50
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.80 E-value=3.7e-19 Score=155.65 Aligned_cols=118 Identities=26% Similarity=0.306 Sum_probs=101.3
Q ss_pred HHHHH-HHhCCCCCCcHHHHHHHHHHHcC------CcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcCcHHHHH
Q psy9277 42 DLLRG-IYAYGFEKPSAIQQRSIKPIVKG------RDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSPTRELAV 114 (178)
Q Consensus 42 ~i~~~-l~~~g~~~~~~~Q~~~i~~i~~g------~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~Pt~~L~~ 114 (178)
..++. +.+++| .||++|.++++.++++ +++++++|||||||++|++|++..+.. +.+++|++||++||.
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~---g~qvlvlaPtr~La~ 431 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA---GFQTAFMVPTSILAI 431 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH---TSCEEEECSCHHHHH
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHH
Confidence 44444 588999 8999999999999875 699999999999999999999988763 579999999999999
Q ss_pred HHHHHHHHhccCCCceEEEEEcCccHHHHHH---HhcC-CCcEEEeChHHHHH
Q psy9277 115 QIQKVVLALGDFMNVQCHACIGGTNLSEDLR---KLDY-GQHVVSGTPGRVFD 163 (178)
Q Consensus 115 q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~-~~~IlV~TP~~l~~ 163 (178)
|+++.+.++....++++..++|+.+..++.. .+.. .++|+|+||+.|.+
T Consensus 432 Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~ 484 (780)
T 1gm5_A 432 QHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE 484 (780)
T ss_dssp HHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH
T ss_pred HHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh
Confidence 9999999999888999999999988776433 3334 48999999998855
No 51
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.80 E-value=2.5e-19 Score=156.17 Aligned_cols=113 Identities=19% Similarity=0.240 Sum_probs=98.9
Q ss_pred HhCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcCcHHHHHHHHHHHHHhccCC
Q psy9277 48 YAYGFEKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSPTRELAVQIQKVVLALGDFM 127 (178)
Q Consensus 48 ~~~g~~~~~~~Q~~~i~~i~~g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 127 (178)
+.+|+ +|+++|..+++.++.|+ +..++||+|||++|.+|++.... .+..++||+||++||.|.++.+..+++.+
T Consensus 106 R~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL---~g~~v~VvTpTreLA~Qdae~m~~l~~~l 179 (922)
T 1nkt_A 106 RVLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNAL---AGNGVHIVTVNDYLAKRDSEWMGRVHRFL 179 (922)
T ss_dssp HHHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHT---TTSCEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred HHcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHH---hCCCeEEEeCCHHHHHHHHHHHHHHHhhc
Confidence 35788 89999999999999998 99999999999999999975433 24589999999999999999999999999
Q ss_pred CceEEEEEcCccHHHHHHHhcCCCcEEEeChHHH-HHHHHcC
Q psy9277 128 NVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRV-FDMIRSS 168 (178)
Q Consensus 128 ~~~~~~~~g~~~~~~~~~~~~~~~~IlV~TP~~l-~~~l~~~ 168 (178)
|+++.+++||.+...+.. ..+|||++|||++| .|+|+.+
T Consensus 180 GLsv~~i~gg~~~~~r~~--~y~~DIvygTpgrlgfDyLrD~ 219 (922)
T 1nkt_A 180 GLQVGVILATMTPDERRV--AYNADITYGTNNEFGFDYLRDN 219 (922)
T ss_dssp TCCEEECCTTCCHHHHHH--HHHSSEEEEEHHHHHHHHHHHT
T ss_pred CCeEEEEeCCCCHHHHHH--hcCCCEEEECchHhhHHHHHhh
Confidence 999999999998655433 34699999999999 8888765
No 52
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.80 E-value=4.5e-19 Score=154.50 Aligned_cols=114 Identities=17% Similarity=0.163 Sum_probs=99.9
Q ss_pred HhCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcCcHHHHHHHHHHHHHhccCC
Q psy9277 48 YAYGFEKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSPTRELAVQIQKVVLALGDFM 127 (178)
Q Consensus 48 ~~~g~~~~~~~Q~~~i~~i~~g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 127 (178)
+-+|+ +|+++|..+++.++.|+ +..+.||+|||++|.+|++.... .+.+++||+||++||.|.+..+..+++.+
T Consensus 74 R~lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL---~G~qv~VvTPTreLA~Qdae~m~~l~~~l 147 (997)
T 2ipc_A 74 RYLGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNAL---TGKGVHVVTVNDYLARRDAEWMGPVYRGL 147 (997)
T ss_dssp HHTCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHT---TCSCCEEEESSHHHHHHHHHHHHHHHHTT
T ss_pred HHhCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHH---hCCCEEEEeCCHHHHHHHHHHHHHHHHhc
Confidence 34799 89999999999999998 99999999999999999964333 34589999999999999999999999999
Q ss_pred CceEEEEEcCccHHHHHHHhcCCCcEEEeChHHH-HHHHHcCC
Q psy9277 128 NVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRV-FDMIRSSQ 169 (178)
Q Consensus 128 ~~~~~~~~g~~~~~~~~~~~~~~~~IlV~TP~~l-~~~l~~~~ 169 (178)
|+++.+++|+.+...+.. ..++||+||||++| .|+|+.+.
T Consensus 148 GLsv~~i~Gg~~~~~r~~--ay~~DIvyGTpgrlgfDyLrd~m 188 (997)
T 2ipc_A 148 GLSVGVIQHASTPAERRK--AYLADVTYVTNSELGFDYLRDNM 188 (997)
T ss_dssp TCCEEECCTTCCHHHHHH--HHTSSEEEEEHHHHHHHHHHHTS
T ss_pred CCeEEEEeCCCCHHHHHH--HcCCCEEEECchhhhhHHHHHhh
Confidence 999999999998655433 34699999999999 89998764
No 53
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.76 E-value=3.6e-19 Score=153.97 Aligned_cols=112 Identities=17% Similarity=0.170 Sum_probs=93.6
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHhhhc---CCCceEEEEcCcHHHHHHH-HHHHHHhccCCCc
Q psy9277 54 KPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISILQSLDTQ---LRETQVLCLSPTRELAVQI-QKVVLALGDFMNV 129 (178)
Q Consensus 54 ~~~~~Q~~~i~~i~~g~~v~v~aptGsGKTl~~ll~il~~l~~~---~~~~~~lil~Pt~~L~~q~-~~~~~~~~~~~~~ 129 (178)
.|+++|.++++.+++|+++++.+|||+|||++|++|+++.+... ..+.++|||+|+++|+.|+ ++.++.++.. ++
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~-~~ 85 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK-WY 85 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTT-TS
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCc-Cc
Confidence 69999999999999999999999999999999999999887653 2236899999999999999 9999998765 58
Q ss_pred eEEEEEcCccHHHHHHHhcCCCcEEEeChHHHHHHHH
Q psy9277 130 QCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIR 166 (178)
Q Consensus 130 ~~~~~~g~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~ 166 (178)
++..++|+.........+..+++|+|+||++|.+.+.
T Consensus 86 ~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~ 122 (699)
T 4gl2_A 86 RVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLL 122 (699)
T ss_dssp CEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC
T ss_pred eEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHh
Confidence 8899999877665445555679999999999998884
No 54
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.74 E-value=1.5e-17 Score=149.23 Aligned_cols=108 Identities=23% Similarity=0.277 Sum_probs=93.0
Q ss_pred HhCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcCcHHHHHHHHHHHHHhccCC
Q psy9277 48 YAYGFEKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSPTRELAVQIQKVVLALGDFM 127 (178)
Q Consensus 48 ~~~g~~~~~~~Q~~~i~~i~~g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 127 (178)
...+|. |+++|.++++.+.+|+++++++|||+|||++|.++++..+. .+.+++|++|+++|+.|+++.+..+..
T Consensus 81 ~~~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~---~g~rvL~l~PtkaLa~Q~~~~l~~~~~-- 154 (1010)
T 2xgj_A 81 RTYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK---NKQRVIYTSPIKALSNQKYRELLAEFG-- 154 (1010)
T ss_dssp CCCSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHH---TTCEEEEEESSHHHHHHHHHHHHHHHS--
T ss_pred HhCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhc---cCCeEEEECChHHHHHHHHHHHHHHhC--
Confidence 455775 99999999999999999999999999999999999988774 457999999999999999999988765
Q ss_pred CceEEEEEcCccHHHHHHHhcCCCcEEEeChHHHHHHHHcCCC
Q psy9277 128 NVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRSSQG 170 (178)
Q Consensus 128 ~~~~~~~~g~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~~ 170 (178)
.+..++|+.+.. .+++|+|+||++|.+++.++..
T Consensus 155 --~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~~~~ 188 (1010)
T 2xgj_A 155 --DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSE 188 (1010)
T ss_dssp --CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHHTCT
T ss_pred --CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHcCcc
Confidence 567778877643 3579999999999999876543
No 55
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.73 E-value=5.8e-17 Score=132.89 Aligned_cols=114 Identities=18% Similarity=0.161 Sum_probs=97.1
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcCcHHHHHHHHHHHHHhccCCCceEEE
Q psy9277 54 KPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSPTRELAVQIQKVVLALGDFMNVQCHA 133 (178)
Q Consensus 54 ~~~~~Q~~~i~~i~~g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~ 133 (178)
.|+++|.++++.++.+ ++++.+|||+|||++++++++..+. ..+.++||++|+++|+.|+++.+.++....+.++..
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~--~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~ 85 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLT--KYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVA 85 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHH--HSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEE
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEE
Confidence 6999999999999999 9999999999999999999988776 245699999999999999999999887544568888
Q ss_pred EEcCccHHHHHHHhcCCCcEEEeChHHHHHHHHcCCCC
Q psy9277 134 CIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRSSQGR 171 (178)
Q Consensus 134 ~~g~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~~~ 171 (178)
+.|+.......... .+++|+|+||+.|.+.+.++...
T Consensus 86 ~~g~~~~~~~~~~~-~~~~ivv~T~~~l~~~~~~~~~~ 122 (494)
T 1wp9_A 86 LTGEKSPEERSKAW-ARAKVIVATPQTIENDLLAGRIS 122 (494)
T ss_dssp ECSCSCHHHHHHHH-HHCSEEEECHHHHHHHHHTTSCC
T ss_pred eeCCcchhhhhhhc-cCCCEEEecHHHHHHHHhcCCcc
Confidence 89888777554333 36899999999999988866543
No 56
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.72 E-value=3.7e-17 Score=146.52 Aligned_cols=109 Identities=17% Similarity=0.218 Sum_probs=92.4
Q ss_pred hCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcCcHHHHHHHHHHHHHhccCCC
Q psy9277 49 AYGFEKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSPTRELAVQIQKVVLALGDFMN 128 (178)
Q Consensus 49 ~~g~~~~~~~Q~~~i~~i~~g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 128 (178)
.++| .|+++|.++++.+++|+++++++|||+|||++|++++...+. .+.+++|++|+++|+.|+++.+..+.. +
T Consensus 35 ~~~f-~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~---~g~~vlvl~PtraLa~Q~~~~l~~~~~--~ 108 (997)
T 4a4z_A 35 SWPF-ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHR---NMTKTIYTSPIKALSNQKFRDFKETFD--D 108 (997)
T ss_dssp CCSS-CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHH---TTCEEEEEESCGGGHHHHHHHHHTTC----
T ss_pred hCCC-CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHHHcC--C
Confidence 4567 489999999999999999999999999999999999887654 457999999999999999999987653 6
Q ss_pred ceEEEEEcCccHHHHHHHhcCCCcEEEeChHHHHHHHHcCCC
Q psy9277 129 VQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRSSQG 170 (178)
Q Consensus 129 ~~~~~~~g~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~~ 170 (178)
+++..++|+.+.. ..++|+|+||++|.+++.....
T Consensus 109 ~~v~~l~G~~~~~-------~~~~IlV~Tpe~L~~~l~~~~~ 143 (997)
T 4a4z_A 109 VNIGLITGDVQIN-------PDANCLIMTTEILRSMLYRGAD 143 (997)
T ss_dssp CCEEEECSSCEEC-------TTSSEEEEEHHHHHHHHHHTCS
T ss_pred CeEEEEeCCCccC-------CCCCEEEECHHHHHHHHHhCch
Confidence 7888888887533 3579999999999999876543
No 57
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.70 E-value=5.5e-17 Score=126.39 Aligned_cols=105 Identities=20% Similarity=0.234 Sum_probs=87.5
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcCcHHHHHHHHHHHHHhccCCCceEEE
Q psy9277 54 KPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSPTRELAVQIQKVVLALGDFMNVQCHA 133 (178)
Q Consensus 54 ~~~~~Q~~~i~~i~~g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~ 133 (178)
.|+++|.++++.++++.+.++++|||+|||++++.++...+.. ...+++|++|+++|+.|+++.+.++....+..+..
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~--~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~ 190 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN--YEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKK 190 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHH--CSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEE
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHHhcccccceEEE
Confidence 7999999999999998889999999999999998887776553 33489999999999999999999997766777888
Q ss_pred EEcCccHHHHHHHhcCCCcEEEeChHHHHH
Q psy9277 134 CIGGTNLSEDLRKLDYGQHVVSGTPGRVFD 163 (178)
Q Consensus 134 ~~g~~~~~~~~~~~~~~~~IlV~TP~~l~~ 163 (178)
+.++..... ....+++|+|+||+++..
T Consensus 191 ~~~~~~~~~---~~~~~~~I~v~T~~~l~~ 217 (282)
T 1rif_A 191 IGGGASKDD---KYKNDAPVVVGTWQTVVK 217 (282)
T ss_dssp CSTTCSSTT---CCCTTCSEEEECHHHHTT
T ss_pred EeCCCcchh---hhccCCcEEEEchHHHHh
Confidence 877765432 222468999999998754
No 58
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.70 E-value=4.9e-17 Score=136.01 Aligned_cols=106 Identities=19% Similarity=0.215 Sum_probs=90.9
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcCcHHHHHHHHHHHHHhccCCCceEE
Q psy9277 53 EKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSPTRELAVQIQKVVLALGDFMNVQCH 132 (178)
Q Consensus 53 ~~~~~~Q~~~i~~i~~g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~ 132 (178)
..|+++|.++++.+++++++++++|||+|||++|+.++...+.. .+.+++||+|+++|+.|+++.+.++....+..+.
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~--~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~ 189 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN--YEGKILIIVPTTALTTQMADDFVDYRLFSHAMIK 189 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHH--CSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEE
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhC--CCCeEEEEECcHHHHHHHHHHHHHhhcCCccceE
Confidence 37999999999999999999999999999999999988887653 3359999999999999999999998766677888
Q ss_pred EEEcCccHHHHHHHhcCCCcEEEeChHHHHH
Q psy9277 133 ACIGGTNLSEDLRKLDYGQHVVSGTPGRVFD 163 (178)
Q Consensus 133 ~~~g~~~~~~~~~~~~~~~~IlV~TP~~l~~ 163 (178)
.+.|+.+..++ +..+++|+|+||+.|..
T Consensus 190 ~~~~~~~~~~~---~~~~~~I~i~T~~~l~~ 217 (510)
T 2oca_A 190 KIGGGASKDDK---YKNDAPVVVGTWQTVVK 217 (510)
T ss_dssp ECGGGCCTTGG---GCTTCSEEEEEHHHHTT
T ss_pred EEecCCccccc---cccCCcEEEEeHHHHhh
Confidence 88888766543 44578999999997643
No 59
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.68 E-value=1.4e-16 Score=121.11 Aligned_cols=123 Identities=17% Similarity=0.166 Sum_probs=89.5
Q ss_pred CHHHHHHHHhCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCC--CceEEEEcCcHHHHHHHH
Q psy9277 40 REDLLRGIYAYGFEKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISILQSLDTQLR--ETQVLCLSPTRELAVQIQ 117 (178)
Q Consensus 40 ~~~i~~~l~~~g~~~~~~~Q~~~i~~i~~g~~v~v~aptGsGKTl~~ll~il~~l~~~~~--~~~~lil~Pt~~L~~q~~ 117 (178)
++...+.+...+...++++|.++++.+.+|++++++||||||||.++.++++........ ..++++++|+++++.|++
T Consensus 47 ~~~~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~ 126 (235)
T 3llm_A 47 DHDLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVA 126 (235)
T ss_dssp CHHHHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHH
T ss_pred CHHHHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHH
Confidence 333333333333345799999999999999999999999999999999998887655433 458999999999999999
Q ss_pred HHHHHhcc-CCCceEEEEEcCccHHHHHHHhcCCCcEEEeChHHHHHHHHc
Q psy9277 118 KVVLALGD-FMNVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRS 167 (178)
Q Consensus 118 ~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~ 167 (178)
+.+..... ..+..+......... ....+++|+|+||++|++++.+
T Consensus 127 ~~~~~~~~~~~~~~~g~~~~~~~~-----~~~~~~~Ivv~Tpg~l~~~l~~ 172 (235)
T 3llm_A 127 ERVAFERGEEPGKSCGYSVRFESI-----LPRPHASIMFCTVGVLLRKLEA 172 (235)
T ss_dssp HHHHHTTTCCTTSSEEEEETTEEE-----CCCSSSEEEEEEHHHHHHHHHH
T ss_pred HHHHHHhccccCceEEEeechhhc-----cCCCCCeEEEECHHHHHHHHHh
Confidence 88865433 344444433222111 1114589999999999999876
No 60
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.68 E-value=1.1e-15 Score=138.86 Aligned_cols=122 Identities=18% Similarity=0.134 Sum_probs=99.7
Q ss_pred CCCCHHHHHHH-HhCCCCCCcHHHHHHHHHHHc----CC--cEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcCc
Q psy9277 37 MGLREDLLRGI-YAYGFEKPSAIQQRSIKPIVK----GR--DVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSPT 109 (178)
Q Consensus 37 ~~l~~~i~~~l-~~~g~~~~~~~Q~~~i~~i~~----g~--~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~Pt 109 (178)
++.+....+.+ ..++|+ +|++|.++++.+++ |+ ++++++|||+|||++|+.+++..+. .+.+++|++||
T Consensus 586 ~~~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~---~g~~vlvlvPt 661 (1151)
T 2eyq_A 586 FKHDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD---NHKQVAVLVPT 661 (1151)
T ss_dssp CCCCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT---TTCEEEEECSS
T ss_pred CCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH---hCCeEEEEech
Confidence 45667777776 567885 79999999999987 65 9999999999999999988877554 45699999999
Q ss_pred HHHHHHHHHHHHHhccCCCceEEEEEcCccHHHHHH---HhcC-CCcEEEeChHHHH
Q psy9277 110 RELAVQIQKVVLALGDFMNVQCHACIGGTNLSEDLR---KLDY-GQHVVSGTPGRVF 162 (178)
Q Consensus 110 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~-~~~IlV~TP~~l~ 162 (178)
++|+.|+++.+.++....++++..+.+.....+... .+.. .++|+|+||+.|.
T Consensus 662 ~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~ 718 (1151)
T 2eyq_A 662 TLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ 718 (1151)
T ss_dssp HHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH
T ss_pred HHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh
Confidence 999999999999888888899988887766554433 3334 4899999997663
No 61
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.63 E-value=1.9e-15 Score=125.20 Aligned_cols=94 Identities=16% Similarity=0.120 Sum_probs=81.9
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcCcHHHHHHHHHHHHHhccCCCce-EE
Q psy9277 54 KPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSPTRELAVQIQKVVLALGDFMNVQ-CH 132 (178)
Q Consensus 54 ~~~~~Q~~~i~~i~~g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~-~~ 132 (178)
.|+++|.++++.++++.++++++|||+|||++|+.++... +.++||++|+++|+.|.++.+.++ ++. +.
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~------~~~~Lvl~P~~~L~~Q~~~~~~~~----~~~~v~ 162 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF----GEEYVG 162 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH------CSCEEEEESSHHHHHHHHHHGGGG----CGGGEE
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEECCHHHHHHHHHHHHhC----CCcceE
Confidence 5899999999999999999999999999999999988763 468999999999999999998774 677 77
Q ss_pred EEEcCccHHHHHHHhcCCCcEEEeChHHHHHHHH
Q psy9277 133 ACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIR 166 (178)
Q Consensus 133 ~~~g~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~ 166 (178)
.+.|+... .++|+|+||+.+...+.
T Consensus 163 ~~~g~~~~---------~~~Ivv~T~~~l~~~~~ 187 (472)
T 2fwr_A 163 EFSGRIKE---------LKPLTVSTYDSAYVNAE 187 (472)
T ss_dssp EBSSSCBC---------CCSEEEEEHHHHHHTHH
T ss_pred EECCCcCC---------cCCEEEEEcHHHHHHHH
Confidence 77776642 47899999999977664
No 62
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.59 E-value=1.9e-14 Score=109.67 Aligned_cols=94 Identities=16% Similarity=0.120 Sum_probs=79.6
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcCcHHHHHHHHHHHHHhccCCCce-EE
Q psy9277 54 KPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSPTRELAVQIQKVVLALGDFMNVQ-CH 132 (178)
Q Consensus 54 ~~~~~Q~~~i~~i~~g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~-~~ 132 (178)
.++++|.+++..++++.++++++|||+|||.+++.++... +.+++|++|+++|+.|.++.+.++ ++. +.
T Consensus 93 ~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~------~~~~liv~P~~~L~~q~~~~~~~~----~~~~v~ 162 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF----GEEYVG 162 (237)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS------CSCEEEEESSHHHHHHHHHHHGGG----CGGGEE
T ss_pred CcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEeCCHHHHHHHHHHHHhC----CCCeEE
Confidence 6899999999999999999999999999999998877652 468999999999999999998774 677 77
Q ss_pred EEEcCccHHHHHHHhcCCCcEEEeChHHHHHHHH
Q psy9277 133 ACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIR 166 (178)
Q Consensus 133 ~~~g~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~ 166 (178)
.+.|+.. ...+|+|+||+.+...+.
T Consensus 163 ~~~g~~~---------~~~~i~v~T~~~l~~~~~ 187 (237)
T 2fz4_A 163 EFSGRIK---------ELKPLTVSTYDSAYVNAE 187 (237)
T ss_dssp EESSSCB---------CCCSEEEEEHHHHHHTHH
T ss_pred EEeCCCC---------CcCCEEEEeHHHHHhhHH
Confidence 7766653 257899999999876654
No 63
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.58 E-value=8.4e-15 Score=124.05 Aligned_cols=80 Identities=19% Similarity=0.144 Sum_probs=69.7
Q ss_pred CCCCCcHHHHHHHHHH----HcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcCcHHHHHHHHHHHHHhccC
Q psy9277 51 GFEKPSAIQQRSIKPI----VKGRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSPTRELAVQIQKVVLALGDF 126 (178)
Q Consensus 51 g~~~~~~~Q~~~i~~i----~~g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 126 (178)
|| ++++.|.+++..+ ..|+++++.+|||+|||++|++|++. .+.+++|++||++|+.|+.+.+..+.+.
T Consensus 1 ~~-~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~------~~~~v~i~~pt~~l~~q~~~~~~~l~~~ 73 (551)
T 3crv_A 1 MV-KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE------VKPKVLFVVRTHNEFYPIYRDLTKIREK 73 (551)
T ss_dssp CC-SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH------HCSEEEEEESSGGGHHHHHHHHTTCCCS
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh------CCCeEEEEcCCHHHHHHHHHHHHHHhhh
Confidence 45 5899999988754 46999999999999999999999998 3569999999999999999999988777
Q ss_pred CCceEEEEEcC
Q psy9277 127 MNVQCHACIGG 137 (178)
Q Consensus 127 ~~~~~~~~~g~ 137 (178)
.+++++.+.|.
T Consensus 74 ~~~~~~~l~gr 84 (551)
T 3crv_A 74 RNITFSFLVGK 84 (551)
T ss_dssp SCCCEEECCCH
T ss_pred cCccEEEEccc
Confidence 78888877663
No 64
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.53 E-value=4.5e-15 Score=122.85 Aligned_cols=104 Identities=18% Similarity=0.147 Sum_probs=79.6
Q ss_pred CCCCCcHHHHHHHHHHHcCCcE-EEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcCcHHHHHHHHHHHHHhccCCCc
Q psy9277 51 GFEKPSAIQQRSIKPIVKGRDV-IAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSPTRELAVQIQKVVLALGDFMNV 129 (178)
Q Consensus 51 g~~~~~~~Q~~~i~~i~~g~~v-~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 129 (178)
|+..++++|. ++|.+++++++ ++++|||||||++|++|++..+.. .+.+++|++||++|+.|+++.+. +.
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~--~~~~~lvl~Ptr~La~Q~~~~l~------g~ 71 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL--RRLRTLILAPTRVVAAEMEEALR------GL 71 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH--TTCCEEEEESSHHHHHHHHHHTT------TS
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh--cCCcEEEECCCHHHHHHHHHHhc------Cc
Confidence 6788999985 79999998887 999999999999999999987665 45799999999999999999874 23
Q ss_pred eEEEEEcCccHHHHHHHhcCCCcEEEeChHHHHHHHHcC
Q psy9277 130 QCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRSS 168 (178)
Q Consensus 130 ~~~~~~g~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~ 168 (178)
.+....+.... ....+..|.++|++.+...+.+.
T Consensus 72 ~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~ 105 (451)
T 2jlq_A 72 PIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS 105 (451)
T ss_dssp CEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC
T ss_pred eeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc
Confidence 32221111111 11234579999999998777654
No 65
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.52 E-value=6.4e-14 Score=122.81 Aligned_cols=131 Identities=18% Similarity=0.194 Sum_probs=95.1
Q ss_pred ccccccccCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHc-CCcEEEEcCCCChHHHHHHHHHHHHhh--hcCCCceEEE
Q psy9277 29 EVVSTFDNMGLREDLLRGIYAYGFEKPSAIQQRSIKPIVK-GRDVIAQAQSGTGKTATFSISILQSLD--TQLRETQVLC 105 (178)
Q Consensus 29 ~~~~~f~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~i~~-g~~v~v~aptGsGKTl~~ll~il~~l~--~~~~~~~~li 105 (178)
.+..+|+++++++.+.+.+.+.+ ..|++.|.++|+.++. +++++++||||||||+ ++|++.... ....+.++++
T Consensus 69 ~~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~~~~~g~~ilv 145 (773)
T 2xau_A 69 GKINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEMPHLENTQVAC 145 (773)
T ss_dssp SSBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHCGGGGTCEEEE
T ss_pred CCCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhccccCCCceEEe
Confidence 45778999999999999998877 6899999999998776 6789999999999998 455552221 1222567999
Q ss_pred EcCcHHHHHHHHHHHHHhc-cCCCceEEEEEcCccHHHHHHHhcCCCcEEEeChHHHHHHHHcC
Q psy9277 106 LSPTRELAVQIQKVVLALG-DFMNVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRSS 168 (178)
Q Consensus 106 l~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~ 168 (178)
++|+++|+.|+++.+.... ...+..+........ ....+.+|+++|||++.+.+...
T Consensus 146 l~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~------~~~~~~~I~v~T~G~l~r~l~~~ 203 (773)
T 2xau_A 146 TQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFEN------KTSNKTILKYMTDGMLLREAMED 203 (773)
T ss_dssp EESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEE------ECCTTCSEEEEEHHHHHHHHHHS
T ss_pred cCchHHHHHHHHHHHHHHhCCchhheecceecccc------ccCCCCCEEEECHHHHHHHHhhC
Confidence 9999999999998764432 223333332211111 11246789999999999887654
No 66
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.47 E-value=1.4e-14 Score=124.38 Aligned_cols=91 Identities=14% Similarity=0.122 Sum_probs=73.2
Q ss_pred CcHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcCcHHHHHHHHHHHHHhccCCCceEEEE
Q psy9277 55 PSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSPTRELAVQIQKVVLALGDFMNVQCHAC 134 (178)
Q Consensus 55 ~~~~Q~~~i~~i~~g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~ 134 (178)
++..|..+++.+..+++++++||||||||++|.+++++ ++.+++|++|||+||.|+++.+.+.. +..+...
T Consensus 218 ~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~------~g~~vLVl~PTReLA~Qia~~l~~~~---g~~vg~~ 288 (666)
T 3o8b_A 218 VFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA------QGYKVLVLNPSVAATLGFGAYMSKAH---GIDPNIR 288 (666)
T ss_dssp SCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHH------TTCCEEEEESCHHHHHHHHHHHHHHH---SCCCEEE
T ss_pred cHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHH------CCCeEEEEcchHHHHHHHHHHHHHHh---CCCeeEE
Confidence 45566666666778899999999999999999999886 35699999999999999999775543 4455566
Q ss_pred EcCccHHHHHHHhcCCCcEEEeChHHH
Q psy9277 135 IGGTNLSEDLRKLDYGQHVVSGTPGRV 161 (178)
Q Consensus 135 ~g~~~~~~~~~~~~~~~~IlV~TP~~l 161 (178)
+|+.. ...+++|+|+||++|
T Consensus 289 vG~~~-------~~~~~~IlV~TPGrL 308 (666)
T 3o8b_A 289 TGVRT-------ITTGAPVTYSTYGKF 308 (666)
T ss_dssp CSSCE-------ECCCCSEEEEEHHHH
T ss_pred ECcEe-------ccCCCCEEEECcHHH
Confidence 66654 346789999999997
No 67
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.46 E-value=1.4e-13 Score=123.56 Aligned_cols=108 Identities=16% Similarity=0.107 Sum_probs=83.9
Q ss_pred CCcHHHHHHHHHHHc--------------CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcCcHHHHHHHHHH
Q psy9277 54 KPSAIQQRSIKPIVK--------------GRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSPTRELAVQIQKV 119 (178)
Q Consensus 54 ~~~~~Q~~~i~~i~~--------------g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~Pt~~L~~q~~~~ 119 (178)
.|+++|.+|++.++. +++.++.++||||||+++ ++++..+.......++|||+|+++|+.|+.+.
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~~ 349 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATELDFIDKVFFVVDRKDLDYQTMKE 349 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTCTTCCEEEEEECGGGCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhcCCCceEEEEeCcHHHHHHHHHH
Confidence 599999999998875 368999999999999997 56665554333346999999999999999999
Q ss_pred HHHhccCCCceEEEEEcCccHHHHHHHhc-CCCcEEEeChHHHHHHHHcC
Q psy9277 120 VLALGDFMNVQCHACIGGTNLSEDLRKLD-YGQHVVSGTPGRVFDMIRSS 168 (178)
Q Consensus 120 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~IlV~TP~~l~~~l~~~ 168 (178)
+..+.... +.++.+.......+. .+++|+|+||++|.+++...
T Consensus 350 f~~f~~~~------v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~ 393 (1038)
T 2w00_A 350 YQRFSPDS------VNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAE 393 (1038)
T ss_dssp HHTTSTTC------SSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHC
T ss_pred HHHhcccc------cccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcc
Confidence 98876431 234444555545553 46899999999999988754
No 68
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.41 E-value=3.4e-13 Score=113.95 Aligned_cols=67 Identities=21% Similarity=0.254 Sum_probs=54.7
Q ss_pred CCCCCCcHHHHHHHHH----HHcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcCcHHHHHHHHHHHHHh
Q psy9277 50 YGFEKPSAIQQRSIKP----IVKGRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSPTRELAVQIQKVVLAL 123 (178)
Q Consensus 50 ~g~~~~~~~Q~~~i~~----i~~g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 123 (178)
.|| .|+++|.+++.. +..|+++++.+|||+|||++|++|++.. +.+++|++||++|+.|+.+.+..+
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~------~~~~~~~~~t~~l~~q~~~~~~~l 74 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL------KKKVLIFTRTHSQLDSIYKNAKLL 74 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH------TCEEEEEESCHHHHHHHHHHHGGG
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC------CCcEEEEcCCHHHHHHHHHHHHhc
Confidence 467 799999998765 4568999999999999999999998763 469999999999999999888664
No 69
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.41 E-value=1.7e-13 Score=116.61 Aligned_cols=100 Identities=23% Similarity=0.224 Sum_probs=61.6
Q ss_pred CCcHHHHHHHHHHHc-----CCcEEEEcCCCChHHHHHHHHHHHHhhhcC-------CCceEEEEcCcHHHHHHHH-HHH
Q psy9277 54 KPSAIQQRSIKPIVK-----GRDVIAQAQSGTGKTATFSISILQSLDTQL-------RETQVLCLSPTRELAVQIQ-KVV 120 (178)
Q Consensus 54 ~~~~~Q~~~i~~i~~-----g~~v~v~aptGsGKTl~~ll~il~~l~~~~-------~~~~~lil~Pt~~L~~q~~-~~~ 120 (178)
.|+++|.++++.+++ ++++++++|||+|||++++. ++..+.... ...++|||+|+++|+.|.+ +.+
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~-~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQ-ISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHH-HHHHHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHH-HHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 699999999998876 46799999999999999654 444444433 5679999999999999999 766
Q ss_pred HHhccCCCceEEEEEcCccHHHHHHHhcCCCcEEEeChHHHHHHHH
Q psy9277 121 LALGDFMNVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIR 166 (178)
Q Consensus 121 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~ 166 (178)
+.+. ..+..+.++ ....+.+|+|+||++|...+.
T Consensus 257 ~~~~----~~~~~~~~~--------~~~~~~~I~v~T~~~l~~~~~ 290 (590)
T 3h1t_A 257 TPFG----DARHKIEGG--------KVVKSREIYFAIYQSIASDER 290 (590)
T ss_dssp TTTC----SSEEECCC----------CCSSCSEEEEEGGGC-----
T ss_pred Hhcc----hhhhhhhcc--------CCCCCCcEEEEEhhhhccccc
Confidence 6553 333333322 233468999999999988754
No 70
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.39 E-value=1.6e-14 Score=123.88 Aligned_cols=82 Identities=22% Similarity=0.208 Sum_probs=66.8
Q ss_pred CCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcCcHHHHHHH
Q psy9277 37 MGLREDLLRGIYAYGFEKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSPTRELAVQI 116 (178)
Q Consensus 37 ~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~i~~g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~Pt~~L~~q~ 116 (178)
+++++..++++... ...++|+|..+++.+++|+++++++|||||||++|++|+++.+.. .+.++||++||++||.|+
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~--~~~~vLvl~PtreLa~Qi 231 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK--RRLRTLILAPTRVVAAEM 231 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH--TTCCEEEEESSHHHHHHH
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEcChHHHHHHH
Confidence 56777777777553 478899988899999999999999999999999999999998865 457999999999999999
Q ss_pred HHHHH
Q psy9277 117 QKVVL 121 (178)
Q Consensus 117 ~~~~~ 121 (178)
++.+.
T Consensus 232 ~~~l~ 236 (618)
T 2whx_A 232 EEALR 236 (618)
T ss_dssp HHHTT
T ss_pred HHHhc
Confidence 98875
No 71
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.35 E-value=1.3e-12 Score=112.02 Aligned_cols=84 Identities=26% Similarity=0.265 Sum_probs=71.5
Q ss_pred CCcHHHHHHHHHH----HcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcCcHHHHHHHHHHHHHhccCCCc
Q psy9277 54 KPSAIQQRSIKPI----VKGRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSPTRELAVQIQKVVLALGDFMNV 129 (178)
Q Consensus 54 ~~~~~Q~~~i~~i----~~g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 129 (178)
+|++.|.+++..+ .+|+++++.||||+|||++|++|++..+.. .+.+++|++||++++.|+.+.+..+....++
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~--~~~kvli~t~T~~l~~Qi~~el~~l~~~~~~ 80 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSE--RKLKVLYLVRTNSQEEQVIKELRSLSSTMKI 80 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHH--HTCEEEEEESSHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhh--cCCeEEEECCCHHHHHHHHHHHHHHhhccCe
Confidence 5899999998644 569999999999999999999999998765 3469999999999999999999988877788
Q ss_pred eEEEEEcCcc
Q psy9277 130 QCHACIGGTN 139 (178)
Q Consensus 130 ~~~~~~g~~~ 139 (178)
+++.+.|..+
T Consensus 81 ~~~~l~gr~~ 90 (620)
T 4a15_A 81 RAIPMQGRVN 90 (620)
T ss_dssp CEEECCCHHH
T ss_pred EEEEEECCCc
Confidence 8888877653
No 72
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.32 E-value=6.9e-14 Score=120.87 Aligned_cols=76 Identities=25% Similarity=0.364 Sum_probs=64.0
Q ss_pred HHHhCCCC-----CCcHHHH-----HHHHHHH------cCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcCc
Q psy9277 46 GIYAYGFE-----KPSAIQQ-----RSIKPIV------KGRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSPT 109 (178)
Q Consensus 46 ~l~~~g~~-----~~~~~Q~-----~~i~~i~------~g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~Pt 109 (178)
++...||. +|+++|. .+||.++ +++|+++++|||||||++|++|+++.+.. .+.+++|++||
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~--~~~~~lilaPT 279 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ--KRLRTAVLAPT 279 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH--TTCCEEEEESS
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh--CCCcEEEEccH
Confidence 44556776 8999999 9999988 89999999999999999999999988765 45799999999
Q ss_pred HHHHHHHHHHHHHh
Q psy9277 110 RELAVQIQKVVLAL 123 (178)
Q Consensus 110 ~~L~~q~~~~~~~~ 123 (178)
++||.|+++.+..+
T Consensus 280 r~La~Q~~~~l~~~ 293 (673)
T 2wv9_A 280 RVVAAEMAEALRGL 293 (673)
T ss_dssp HHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999988644
No 73
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.22 E-value=1.3e-11 Score=102.30 Aligned_cols=92 Identities=14% Similarity=0.136 Sum_probs=64.1
Q ss_pred HHHHHcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccHHH
Q psy9277 63 IKPIVKGRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSPTRELAVQIQKVVLALGDFMNVQCHACIGGTNLSE 142 (178)
Q Consensus 63 i~~i~~g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~ 142 (178)
...+.+++++++++|||||||++|++|+++.+.. .+.++||++||++||.|+++.+. +..+....+.....
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~--~~~~~lvl~Ptr~La~Q~~~~l~------g~~v~~~~~~~~~~- 85 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ--QRLRTAVLAPTRVVAAEMAEALR------GLPVRYQTSAVQRE- 85 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH--TTCCEEEEECSHHHHHHHHHHTT------TSCEEECC-------
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh--CCCcEEEECchHHHHHHHHHHhc------CceEeEEecccccC-
Confidence 3445668999999999999999999999998765 45799999999999999999886 22222211111110
Q ss_pred HHHHhcCCCcEEEeChHHHHHHHHc
Q psy9277 143 DLRKLDYGQHVVSGTPGRVFDMIRS 167 (178)
Q Consensus 143 ~~~~~~~~~~IlV~TP~~l~~~l~~ 167 (178)
-..+..+.+.|.+.+...+.+
T Consensus 86 ----~t~~~~i~~~~~~~l~~~l~~ 106 (459)
T 2z83_A 86 ----HQGNEIVDVMCHATLTHRLMS 106 (459)
T ss_dssp ------CCCSEEEEEHHHHHHHHHS
T ss_pred ----CCCCcEEEEEchHHHHHHhhc
Confidence 112345677888887665544
No 74
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.19 E-value=4.7e-11 Score=98.25 Aligned_cols=87 Identities=13% Similarity=0.081 Sum_probs=60.6
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccHHHHHHHh
Q psy9277 68 KGRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSPTRELAVQIQKVVLALGDFMNVQCHACIGGTNLSEDLRKL 147 (178)
Q Consensus 68 ~g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 147 (178)
+|+++++++|||||||++|++|+++.+.. .+.+++|++||++|+.|+++.+. ++.+....|+... .-
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~--~g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~-----~~ 67 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVK--KRLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQS-----ER 67 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHH--TTCCEEEEESSHHHHHHHHHHTT------TSCEEEC-------------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHh--CCCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCccc-----cC
Confidence 37899999999999999999999976654 45699999999999999998775 4444444443221 11
Q ss_pred cCCCcEEEeChHHHHHHHHc
Q psy9277 148 DYGQHVVSGTPGRVFDMIRS 167 (178)
Q Consensus 148 ~~~~~IlV~TP~~l~~~l~~ 167 (178)
..+..+.+.|.+.+...+.+
T Consensus 68 ~~~~~~~~~~~~~l~~~l~~ 87 (431)
T 2v6i_A 68 TGNEIVDFMCHSTFTMKLLQ 87 (431)
T ss_dssp -CCCSEEEEEHHHHHHHHHH
T ss_pred CCCceEEEEchHHHHHHHhc
Confidence 12345667788887655544
No 75
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.16 E-value=1.1e-10 Score=97.29 Aligned_cols=102 Identities=10% Similarity=0.031 Sum_probs=76.3
Q ss_pred CCcHHHHHHHHHH----HcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcCcHHHHHHHHHHHHHhccCCCc
Q psy9277 54 KPSAIQQRSIKPI----VKGRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSPTRELAVQIQKVVLALGDFMNV 129 (178)
Q Consensus 54 ~~~~~Q~~~i~~i----~~g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 129 (178)
.|+++|.++++.+ ..+.++++..+||+|||+.++..+ ..+.......++||||| .+|+.|..+.++++.. +.
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i-~~~~~~~~~~~~LIv~P-~~l~~qw~~e~~~~~~--~~ 112 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVF-SDAKKENELTPSLVICP-LSVLKNWEEELSKFAP--HL 112 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHH-HHHHHTTCCSSEEEEEC-STTHHHHHHHHHHHCT--TS
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHH-HHHHhcCCCCCEEEEcc-HHHHHHHHHHHHHHCC--Cc
Confidence 6999999998766 358899999999999999975544 44444444568999999 5699999999998865 45
Q ss_pred eEEEEEcCccHHHHHHHhcCCCcEEEeChHHHHHH
Q psy9277 130 QCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDM 164 (178)
Q Consensus 130 ~~~~~~g~~~~~~~~~~~~~~~~IlV~TP~~l~~~ 164 (178)
++..+.|+... ......+|+|+||+.+...
T Consensus 113 ~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~ 142 (500)
T 1z63_A 113 RFAVFHEDRSK-----IKLEDYDIILTTYAVLLRD 142 (500)
T ss_dssp CEEECSSSTTS-----CCGGGSSEEEEEHHHHTTC
T ss_pred eEEEEecCchh-----ccccCCcEEEeeHHHHhcc
Confidence 56666555422 1123579999999998543
No 76
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.15 E-value=1.8e-11 Score=100.99 Aligned_cols=57 Identities=28% Similarity=0.426 Sum_probs=50.5
Q ss_pred HHHcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcCcHHHHHHHHHHHHHh
Q psy9277 65 PIVKGRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSPTRELAVQIQKVVLAL 123 (178)
Q Consensus 65 ~i~~g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 123 (178)
.+++|+|+++++|||||||++|++|+++.+.. .+.+++|++||++||.|+++.+..+
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~--~~~~~lil~Ptr~La~Q~~~~l~~~ 60 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECAR--RRLRTLVLAPTRVVLSEMKEAFHGL 60 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHH--TTCCEEEEESSHHHHHHHHHHTTTS
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh--cCCeEEEEcchHHHHHHHHHHHhcC
Confidence 45679999999999999999999999997765 4579999999999999999988643
No 77
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.07 E-value=2e-10 Score=99.31 Aligned_cols=105 Identities=19% Similarity=0.160 Sum_probs=69.4
Q ss_pred CHHHHHHHHhCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcCcHHHHHHHHHH
Q psy9277 40 REDLLRGIYAYGFEKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSPTRELAVQIQKV 119 (178)
Q Consensus 40 ~~~i~~~l~~~g~~~~~~~Q~~~i~~i~~g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~Pt~~L~~q~~~~ 119 (178)
..+.++++.+++. |. |.......++|++++++||||||||+ ++++.+... ..++|++||++||.|+++.
T Consensus 130 ~~d~l~~i~dl~~--p~--~~~p~ar~l~rk~vlv~apTGSGKT~----~al~~l~~~---~~gl~l~PtR~LA~Qi~~~ 198 (677)
T 3rc3_A 130 CKDDLRKISDLRI--PP--NWYPDARAMQRKIIFHSGPTNSGKTY----HAIQKYFSA---KSGVYCGPLKLLAHEIFEK 198 (677)
T ss_dssp CHHHHHHHTBCCC--GG--GGCHHHHTSCCEEEEEECCTTSSHHH----HHHHHHHHS---SSEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHhhccC--hh--hhCHHHHhcCCCEEEEEcCCCCCHHH----HHHHHHHhc---CCeEEEeCHHHHHHHHHHH
Confidence 3344455544433 32 22223345679999999999999998 444444432 3459999999999999999
Q ss_pred HHHhccCCCceEEEEEcCccHHHHHHHhcCCCcEEEeChHHH
Q psy9277 120 VLALGDFMNVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRV 161 (178)
Q Consensus 120 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~TP~~l 161 (178)
+... ++.+..++|+...... .-....+++++|++.+
T Consensus 199 l~~~----g~~v~lltG~~~~iv~--TpGr~~~il~~T~e~~ 234 (677)
T 3rc3_A 199 SNAA----GVPCDLVTGEERVTVQ--PNGKQASHVSCTVEMC 234 (677)
T ss_dssp HHHT----TCCEEEECSSCEECCS--TTCCCCSEEEEEGGGC
T ss_pred HHhc----CCcEEEEECCeeEEec--CCCcccceeEecHhHh
Confidence 9876 7788888888655100 0001257888888654
No 78
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.04 E-value=5.2e-10 Score=100.28 Aligned_cols=104 Identities=15% Similarity=0.035 Sum_probs=75.7
Q ss_pred CCcHHHHHHHHHHHc--CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcCcHHHHHHHHHHHHHhccCCCceE
Q psy9277 54 KPSAIQQRSIKPIVK--GRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSPTRELAVQIQKVVLALGDFMNVQC 131 (178)
Q Consensus 54 ~~~~~Q~~~i~~i~~--g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~ 131 (178)
.|+++|.+++..++. +.+++++++||+|||+.++..+...+.. ....++|||||+ +|+.|..+.+.+.. ++.+
T Consensus 153 ~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~-g~~~rvLIVvP~-sLl~Qw~~E~~~~f---~l~v 227 (968)
T 3dmq_A 153 SLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLS-GAAERVLIIVPE-TLQHQWLVEMLRRF---NLRF 227 (968)
T ss_dssp CCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHT-SSCCCEEEECCT-TTHHHHHHHHHHHS---CCCC
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHh-CCCCeEEEEeCH-HHHHHHHHHHHHHh---CCCE
Confidence 689999999998877 4589999999999999997777665543 334589999999 99999999886554 5555
Q ss_pred EEEEcCccHHHHHH--HhcCCCcEEEeChHHHH
Q psy9277 132 HACIGGTNLSEDLR--KLDYGQHVVSGTPGRVF 162 (178)
Q Consensus 132 ~~~~g~~~~~~~~~--~~~~~~~IlV~TP~~l~ 162 (178)
..+.++........ ......+|+|+|++.+.
T Consensus 228 ~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~ 260 (968)
T 3dmq_A 228 ALFDDERYAEAQHDAYNPFDTEQLVICSLDFAR 260 (968)
T ss_dssp EECCHHHHHHHHHTTCSSSTTCSEEEECHHHHH
T ss_pred EEEccchhhhhhhhcccccccCCEEEEcHHHHh
Confidence 55544332221111 11135699999998884
No 79
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.02 E-value=2.9e-09 Score=91.94 Aligned_cols=83 Identities=17% Similarity=0.171 Sum_probs=72.7
Q ss_pred HhCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcCcHHHHHHHHHHHHHhccCC
Q psy9277 48 YAYGFEKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSPTRELAVQIQKVVLALGDFM 127 (178)
Q Consensus 48 ~~~g~~~~~~~Q~~~i~~i~~g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 127 (178)
+-+|. +|+++|....-.+..|+ +..+.||+|||+++.+|++-... .+..+.+|+|+..||.|-++.+..+.+.+
T Consensus 70 R~lg~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL---~G~~vhVvT~ndyLA~rdae~m~~l~~~L 143 (822)
T 3jux_A 70 RTLGM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNAL---IGKGVHLVTVNDYLARRDALWMGPVYLFL 143 (822)
T ss_dssp HHTSC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHT---TSSCEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred HHhCC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHh---cCCceEEEeccHHHHHhHHHHHHHHHHHh
Confidence 34576 69999999998888887 99999999999999999874433 35679999999999999999999999999
Q ss_pred CceEEEEEc
Q psy9277 128 NVQCHACIG 136 (178)
Q Consensus 128 ~~~~~~~~g 136 (178)
|+++.+++.
T Consensus 144 glsvg~i~~ 152 (822)
T 3jux_A 144 GLRVGVINS 152 (822)
T ss_dssp TCCEEEEET
T ss_pred CCEEEEEcC
Confidence 999999887
No 80
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=98.95 E-value=4.1e-09 Score=92.77 Aligned_cols=108 Identities=15% Similarity=0.152 Sum_probs=82.3
Q ss_pred CCcHHHHHHHHHHH----cCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcCcHHHHHHHHHHHHHhccCCCc
Q psy9277 54 KPSAIQQRSIKPIV----KGRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSPTRELAVQIQKVVLALGDFMNV 129 (178)
Q Consensus 54 ~~~~~Q~~~i~~i~----~g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 129 (178)
.++++|.+++..+. .+.+.++..++|.|||+..+..+...+........+||||| .+|+.|..+.+.++.. ++
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~p--~~ 312 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKWAP--DL 312 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHHST--TC
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHHCC--Cc
Confidence 68899999997655 68999999999999999987766655544445567899999 7888999999988864 56
Q ss_pred eEEEEEcCccHHHHHHHh------------cCCCcEEEeChHHHHHH
Q psy9277 130 QCHACIGGTNLSEDLRKL------------DYGQHVVSGTPGRVFDM 164 (178)
Q Consensus 130 ~~~~~~g~~~~~~~~~~~------------~~~~~IlV~TP~~l~~~ 164 (178)
++..+.|+.......... ...++|+|+|++.+...
T Consensus 313 ~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~ 359 (800)
T 3mwy_W 313 NCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKD 359 (800)
T ss_dssp CEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHT
T ss_pred eEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhh
Confidence 777777776554433321 23568999999998653
No 81
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=98.83 E-value=3.7e-08 Score=84.83 Aligned_cols=109 Identities=19% Similarity=0.085 Sum_probs=77.8
Q ss_pred CCcHHHHHHHHHHH---------cCCcEEEEcCCCChHHHHHHHHHHHHhhhcC----CCceEEEEcCcHHHHHHHHHHH
Q psy9277 54 KPSAIQQRSIKPIV---------KGRDVIAQAQSGTGKTATFSISILQSLDTQL----RETQVLCLSPTRELAVQIQKVV 120 (178)
Q Consensus 54 ~~~~~Q~~~i~~i~---------~g~~v~v~aptGsGKTl~~ll~il~~l~~~~----~~~~~lil~Pt~~L~~q~~~~~ 120 (178)
.++|+|.+++..+. .+.+.++..++|.|||+..+..+...+.... ...++|||+|+ +|+.|..+.+
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 68999999998764 4578999999999999998776665443321 12468999997 8889999999
Q ss_pred HHhccCCCceEEEEEcCccHHHH--HHH-hc-----CCCcEEEeChHHHHHH
Q psy9277 121 LALGDFMNVQCHACIGGTNLSED--LRK-LD-----YGQHVVSGTPGRVFDM 164 (178)
Q Consensus 121 ~~~~~~~~~~~~~~~g~~~~~~~--~~~-~~-----~~~~IlV~TP~~l~~~ 164 (178)
.++... .+.++.+.++...... ... .. ...+|+|+|++.+...
T Consensus 134 ~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~ 184 (644)
T 1z3i_X 134 GKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLH 184 (644)
T ss_dssp HHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHH
T ss_pred HHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhh
Confidence 888654 4666666666543221 111 11 1368999999998654
No 82
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.45 E-value=3.7e-07 Score=78.09 Aligned_cols=66 Identities=17% Similarity=0.170 Sum_probs=55.8
Q ss_pred cHHHHHHHHHHHcCCcEEEEcCCCChHH--HHHHHHHHHHhhhcCCCceEEEEcCcHHHHHHHHHHHHH
Q psy9277 56 SAIQQRSIKPIVKGRDVIAQAQSGTGKT--ATFSISILQSLDTQLRETQVLCLSPTRELAVQIQKVVLA 122 (178)
Q Consensus 56 ~~~Q~~~i~~i~~g~~v~v~aptGsGKT--l~~ll~il~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 122 (178)
++.|..+++.++.++.+++.|++|+||| ++++++.+..+.. ..+.++++++||...|.++.+.+..
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~-~~~~~vll~APTg~AA~~L~e~~~~ 218 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD-GERCRIRLAAPTGKAAARLTESLGK 218 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS-SCCCCEEEEBSSHHHHHHHHHHHTH
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh-cCCCeEEEEeCChhHHHHHHHHHHH
Confidence 7899999999999999999999999999 6677777765432 2456899999999999999887754
No 83
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.96 E-value=3.4e-05 Score=66.35 Aligned_cols=67 Identities=22% Similarity=0.278 Sum_probs=54.2
Q ss_pred CCcHHHHHHHHHHHcCC-cEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcCcHHHHHHHHHHHHHh
Q psy9277 54 KPSAIQQRSIKPIVKGR-DVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSPTRELAVQIQKVVLAL 123 (178)
Q Consensus 54 ~~~~~Q~~~i~~i~~g~-~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 123 (178)
.+++-|.+|+..++..+ -.+|.||+|||||.+.+-.+.+.+. .+.++|+++||..-|.++.+.+...
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~---~~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVK---QGLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHH---TTCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHh---CCCeEEEEcCchHHHHHHHHHHHhc
Confidence 47899999999988765 5689999999999886555544433 4568999999999999999888654
No 84
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=97.87 E-value=5.3e-05 Score=65.46 Aligned_cols=69 Identities=32% Similarity=0.385 Sum_probs=53.3
Q ss_pred CCCCCcHHHHHHHHHHHc----CC-cEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcCcHHHHHHHHHHHHHhcc
Q psy9277 51 GFEKPSAIQQRSIKPIVK----GR-DVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSPTRELAVQIQKVVLALGD 125 (178)
Q Consensus 51 g~~~~~~~Q~~~i~~i~~----g~-~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 125 (178)
+| .|+..|..++..+.. |. ..++.+.||||||+++.-.+ ... +..+|||+|+..+|.|+++.++.|..
T Consensus 6 ~~-~~~~~q~~ai~~l~~~~~~~~~~~~l~g~tgs~kt~~~a~~~-~~~-----~~~~lvv~~~~~~A~ql~~el~~~~~ 78 (664)
T 1c4o_A 6 GP-SPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKVI-EAL-----GRPALVLAPNKILAAQLAAEFRELFP 78 (664)
T ss_dssp SC-CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHH-HHH-----TCCEEEEESSHHHHHHHHHHHHHHCT
T ss_pred CC-CCCCCChHHHHHHHHHHhcCCCcEEEEcCCCcHHHHHHHHHH-HHh-----CCCEEEEecCHHHHHHHHHHHHHHCC
Confidence 56 799999999887654 33 57789999999997764322 222 22589999999999999999999964
Q ss_pred C
Q psy9277 126 F 126 (178)
Q Consensus 126 ~ 126 (178)
.
T Consensus 79 ~ 79 (664)
T 1c4o_A 79 E 79 (664)
T ss_dssp T
T ss_pred C
Confidence 3
No 85
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.85 E-value=6.6e-05 Score=64.37 Aligned_cols=69 Identities=23% Similarity=0.256 Sum_probs=55.1
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcCcHHHHHHHHHHHHHh
Q psy9277 53 EKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSPTRELAVQIQKVVLAL 123 (178)
Q Consensus 53 ~~~~~~Q~~~i~~i~~g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 123 (178)
..+++.|.+++..++.+..++|.||+|+|||....- ++..+... .+.++++++||..-+.++.+.+...
T Consensus 179 ~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~-~i~~l~~~-~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 179 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSAT-IVYHLARQ-GNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp CCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHH-HHHHHHTS-SSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHH-HHHHHHHc-CCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 457899999999999888899999999999987543 33333322 4568999999999999999887654
No 86
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.83 E-value=7.3e-05 Score=65.90 Aligned_cols=69 Identities=17% Similarity=0.258 Sum_probs=55.2
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcCcHHHHHHHHHHHHHh
Q psy9277 53 EKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSPTRELAVQIQKVVLAL 123 (178)
Q Consensus 53 ~~~~~~Q~~~i~~i~~g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 123 (178)
..+++.|.+|+..++.+.-++|.||+|+|||....--+ ..+... .+.++++++||..-+.++.+.+...
T Consensus 359 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i-~~l~~~-~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIV-YHLSKI-HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp CCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHH-HHHHHH-HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHH-HHHHhC-CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 45789999999999888889999999999998754333 333321 3458999999999999999988765
No 87
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.74 E-value=0.0001 Score=62.99 Aligned_cols=70 Identities=14% Similarity=0.212 Sum_probs=55.7
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHhhhcC-CCceEEEEcCcHHHHHHHHHHHHHhc
Q psy9277 53 EKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISILQSLDTQL-RETQVLCLSPTRELAVQIQKVVLALG 124 (178)
Q Consensus 53 ~~~~~~Q~~~i~~i~~g~~v~v~aptGsGKTl~~ll~il~~l~~~~-~~~~~lil~Pt~~L~~q~~~~~~~~~ 124 (178)
..+++-|.+++.. .+..++|.|+.|||||.+.+--+.+.+.... ...+++++++|+..+.++.+.+..+.
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 4689999999973 3678999999999999887665655554322 33589999999999999999997764
No 88
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.68 E-value=0.00018 Score=63.43 Aligned_cols=69 Identities=23% Similarity=0.266 Sum_probs=55.0
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcCcHHHHHHHHHHHHHh
Q psy9277 53 EKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSPTRELAVQIQKVVLAL 123 (178)
Q Consensus 53 ~~~~~~Q~~~i~~i~~g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 123 (178)
..+++.|.+++..++.+.-.+|.||+|+|||.... .++..+... .+.++++++||..-|.++.+.+...
T Consensus 355 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~-~~i~~l~~~-~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA-TIVYHLARQ-GNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp CCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHH-HHHHHHHTT-CSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHH-HHHHHHHHc-CCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 35789999999999988889999999999998754 333444332 4568999999999999998887654
No 89
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.62 E-value=0.00021 Score=58.97 Aligned_cols=72 Identities=21% Similarity=0.258 Sum_probs=52.1
Q ss_pred HHhCCCCCCcHHHHHHHHHHHc-----CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcCcHHHHHHHHHHH
Q psy9277 47 IYAYGFEKPSAIQQRSIKPIVK-----GRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSPTRELAVQIQKVV 120 (178)
Q Consensus 47 l~~~g~~~~~~~Q~~~i~~i~~-----g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~Pt~~L~~q~~~~~ 120 (178)
...+.|..+++-|.+++..++. ...+++.|+.|||||... ..++..+... ....+++++||...+..+...+
T Consensus 18 ~~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~-~~~~il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 18 GSHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALIST-GETGIILAAPTHAAKKILSKLS 94 (459)
T ss_dssp ---CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHT-TCCCEEEEESSHHHHHHHHHHH
T ss_pred cCCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhc-CCceEEEecCcHHHHHHHHhhh
Confidence 3456788999999999987754 239999999999999654 3444444443 2247899999999888776544
No 90
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.56 E-value=0.00032 Score=59.55 Aligned_cols=63 Identities=22% Similarity=0.228 Sum_probs=51.1
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcCcHHHHHHHHHH
Q psy9277 54 KPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSPTRELAVQIQKV 119 (178)
Q Consensus 54 ~~~~~Q~~~i~~i~~g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~Pt~~L~~q~~~~ 119 (178)
.+++.|.+++..++.+..+++.|++|+|||... ..++..+.. .+.++++++||...+..+.+.
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i-~~l~~~l~~--~g~~Vl~~ApT~~Aa~~L~e~ 251 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTT-KAVADLAES--LGLEVGLCAPTGKAARRLGEV 251 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHH-HHHHHHHHH--TTCCEEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHH-HHHHHHHHh--cCCeEEEecCcHHHHHHhHhh
Confidence 589999999999999999999999999999663 334443333 456899999999999888764
No 91
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=97.51 E-value=0.00028 Score=60.85 Aligned_cols=70 Identities=16% Similarity=0.150 Sum_probs=55.9
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHhhhc-CCCceEEEEcCcHHHHHHHHHHHHHhcc
Q psy9277 54 KPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISILQSLDTQ-LRETQVLCLSPTRELAVQIQKVVLALGD 125 (178)
Q Consensus 54 ~~~~~Q~~~i~~i~~g~~v~v~aptGsGKTl~~ll~il~~l~~~-~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 125 (178)
.+++-|.+++.. .+..++|.|+.|||||.+.+--+.+.+... ....++++|+.|+..|.++.+.+.....
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 478999998875 367899999999999988766665555442 2345899999999999999999977754
No 92
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=97.31 E-value=0.00057 Score=62.90 Aligned_cols=68 Identities=19% Similarity=0.300 Sum_probs=55.8
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHhhhcC---CCceEEEEcCcHHHHHHHHHHHHHh
Q psy9277 54 KPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISILQSLDTQL---RETQVLCLSPTRELAVQIQKVVLAL 123 (178)
Q Consensus 54 ~~~~~Q~~~i~~i~~g~~v~v~aptGsGKTl~~ll~il~~l~~~~---~~~~~lil~Pt~~L~~q~~~~~~~~ 123 (178)
.+|+-|.+++..- +.+++|.|..|||||.+.+--++..+.... ...+++++++|++.|.++.+.+...
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~ 80 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEA 80 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHH
Confidence 5899999998754 889999999999999887766776665432 3358999999999999999988653
No 93
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=97.24 E-value=0.0012 Score=57.41 Aligned_cols=70 Identities=19% Similarity=0.250 Sum_probs=55.7
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHhhhc-CCCceEEEEcCcHHHHHHHHHHHHHhc
Q psy9277 53 EKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISILQSLDTQ-LRETQVLCLSPTRELAVQIQKVVLALG 124 (178)
Q Consensus 53 ~~~~~~Q~~~i~~i~~g~~v~v~aptGsGKTl~~ll~il~~l~~~-~~~~~~lil~Pt~~L~~q~~~~~~~~~ 124 (178)
..+++-|.+++.. .+..++|.|+.|||||.+.+--+.+.+... -...++++|+.|+..|.++.+.+..+.
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l 80 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLL 80 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 4689999998865 357899999999999988776666655432 234589999999999999999887764
No 94
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=97.20 E-value=0.0019 Score=55.69 Aligned_cols=67 Identities=25% Similarity=0.322 Sum_probs=50.7
Q ss_pred CCcHHHHHHHHHHHc----CC-cEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcCcHHHHHHHHHHHHHhccC
Q psy9277 54 KPSAIQQRSIKPIVK----GR-DVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSPTRELAVQIQKVVLALGDF 126 (178)
Q Consensus 54 ~~~~~Q~~~i~~i~~----g~-~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 126 (178)
.|+..|..++..+.. |. ...+.+-||||||++..-. +... + ..+|||+|+..+|.|.+..++.|...
T Consensus 12 ~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~a~~-~~~~----~-~~~lvv~~~~~~A~~l~~el~~~~~~ 83 (661)
T 2d7d_A 12 QPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSNL-IKEV----N-KPTLVIAHNKTLAGQLYSEFKEFFPN 83 (661)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHH-HHHH----C-CCEEEECSSHHHHHHHHHHHHHHCTT
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHHHHH-HHHh----C-CCEEEEECCHHHHHHHHHHHHHHcCC
Confidence 688899888876553 43 4778899999999765422 2221 2 25899999999999999999999643
No 95
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.88 E-value=0.0065 Score=51.67 Aligned_cols=72 Identities=13% Similarity=0.133 Sum_probs=57.9
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcCcHHHHHHHHHHHHHhccC
Q psy9277 54 KPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSPTRELAVQIQKVVLALGDF 126 (178)
Q Consensus 54 ~~~~~Q~~~i~~i~~g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 126 (178)
.++++|...+..+...+.+++..+-++|||.+....++..+... .+..+++++|+.+.|..+++.++.+.+.
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~-~~~~i~~va~t~~qA~~~~~~i~~~i~~ 234 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN-KDKAVGILAHKGSMSAEVLDRTKQAIEL 234 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTS-SSCEEEEEESSHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHHHHh
Confidence 47999999998876678899999999999998776555554433 3458999999999999999888776543
No 96
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=96.85 E-value=0.0061 Score=49.24 Aligned_cols=71 Identities=13% Similarity=0.108 Sum_probs=56.8
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcCcHHHHHHHHHHHHHhcc
Q psy9277 54 KPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSPTRELAVQIQKVVLALGD 125 (178)
Q Consensus 54 ~~~~~Q~~~i~~i~~g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 125 (178)
.++++|...+..+...+.+++..+-+.|||.+....++..+.. ..+..+++++|+++.|..+++.+..+.+
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~-~~g~~v~~vA~t~~qA~~vf~~i~~mi~ 233 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF-NKDKAVGILAHKGSMSAEVLDRTKQAIE 233 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHS-SSSCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHHHHH
Confidence 6899999999877666779999999999999877666654443 2456899999999999988887766543
No 97
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=96.30 E-value=0.026 Score=39.86 Aligned_cols=58 Identities=14% Similarity=0.080 Sum_probs=45.1
Q ss_pred cCCCceEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccHHHHHHHhc----CCCcEEEeCh
Q psy9277 97 QLRETQVLCLSPTRELAVQIQKVVLALGDFMNVQCHACIGGTNLSEDLRKLD----YGQHVVSGTP 158 (178)
Q Consensus 97 ~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~IlV~TP 158 (178)
.....++||.++++..+..++..+... ++.+..++|+.+..++...+. ...+|+|+|.
T Consensus 31 ~~~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~ 92 (175)
T 2rb4_A 31 SITIGQAIIFCQTRRNAKWLTVEMIQD----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN 92 (175)
T ss_dssp TSCCSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC
T ss_pred hCCCCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec
Confidence 334569999999999999999888654 788899999988776655442 3578999993
No 98
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=96.24 E-value=0.027 Score=39.36 Aligned_cols=55 Identities=15% Similarity=0.203 Sum_probs=44.1
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccHHHHHHHhc----CCCcEEEeC
Q psy9277 99 RETQVLCLSPTRELAVQIQKVVLALGDFMNVQCHACIGGTNLSEDLRKLD----YGQHVVSGT 157 (178)
Q Consensus 99 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~IlV~T 157 (178)
.+.++||.++++..+..+++.+... ++.+..++|+.+..++...+. ...+|+|+|
T Consensus 34 ~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T 92 (163)
T 2hjv_A 34 NPDSCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVAT 92 (163)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEC
Confidence 4568999999999999999988765 788899999988776554442 346899999
No 99
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=96.05 E-value=0.039 Score=38.57 Aligned_cols=56 Identities=13% Similarity=0.050 Sum_probs=44.3
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccHHHHHHHhc----CCCcEEEeCh
Q psy9277 99 RETQVLCLSPTRELAVQIQKVVLALGDFMNVQCHACIGGTNLSEDLRKLD----YGQHVVSGTP 158 (178)
Q Consensus 99 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~IlV~TP 158 (178)
.+.++||.+++++.+..++..+... ++.+..++|+.+..++...+. ...+|+|+|.
T Consensus 29 ~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 88 (165)
T 1fuk_A 29 SVTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD 88 (165)
T ss_dssp TCSCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 4568999999999999999888764 678889999988776654442 3568999993
No 100
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=96.02 E-value=0.048 Score=38.50 Aligned_cols=56 Identities=14% Similarity=0.247 Sum_probs=44.7
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccHHHHHHHhc----CCCcEEEeCh
Q psy9277 99 RETQVLCLSPTRELAVQIQKVVLALGDFMNVQCHACIGGTNLSEDLRKLD----YGQHVVSGTP 158 (178)
Q Consensus 99 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~IlV~TP 158 (178)
.+.++||.++++..+..+++.+... ++.+..++|+.+..++...+. ....|+|+|.
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~ 89 (172)
T 1t5i_A 30 EFNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN 89 (172)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECC
Confidence 4568999999999999999988765 788889999988776554443 3578999994
No 101
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=95.89 E-value=0.047 Score=39.99 Aligned_cols=56 Identities=20% Similarity=0.195 Sum_probs=45.1
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccHHHHHHHhc----CCCcEEEeCh
Q psy9277 99 RETQVLCLSPTRELAVQIQKVVLALGDFMNVQCHACIGGTNLSEDLRKLD----YGQHVVSGTP 158 (178)
Q Consensus 99 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~IlV~TP 158 (178)
.+.++||.++++.-+..+++.+... ++.+..++|+.+..++...+. ...+|+|+|.
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~ 89 (212)
T 3eaq_A 30 SPDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD 89 (212)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC
Confidence 4569999999999999999988765 788899999988776655443 3468999993
No 102
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.78 E-value=0.0041 Score=50.99 Aligned_cols=57 Identities=16% Similarity=0.235 Sum_probs=37.3
Q ss_pred ccccccccccCCCCHHHHHHHHhCC---CCCCcHHHHHHHHHHHcCCcEEEEcCCCChHHHHH
Q psy9277 27 DVEVVSTFDNMGLREDLLRGIYAYG---FEKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 27 ~~~~~~~f~~~~l~~~i~~~l~~~g---~~~~~~~Q~~~i~~i~~g~~v~v~aptGsGKTl~~ 86 (178)
+..+..+|++++--+...+.|.+.= +..|..++.. -+.-.+.+++.||+|+|||+.+
T Consensus 173 ~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~---g~~~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 173 DEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDM---GIRAPKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHH---CCCCCCEEEEESCTTSSHHHHH
T ss_pred CCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhC---CCCCCCeeEEECcCCCCHHHHH
Confidence 3467789999987777777775421 1122222221 1222589999999999999775
No 103
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=95.58 E-value=0.16 Score=42.18 Aligned_cols=52 Identities=12% Similarity=0.222 Sum_probs=39.7
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcCcHHHHHHHHHHHHHhcc
Q psy9277 68 KGRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSPTRELAVQIQKVVLALGD 125 (178)
Q Consensus 68 ~g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 125 (178)
.+....+.+-+|||||++..-.+ .. .+..+|+|+|+...|.|+++.++.+..
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a~l~-----~~-~~~p~lvv~~~~~~A~~l~~~l~~~~~ 64 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVAEIA-----ER-HAGPVVLIAPDMQNALRLHDEISQFTD 64 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHHHHH-----HH-SSSCEEEEESSHHHHHHHHHHHHHTCS
T ss_pred CCCeEEEeCCCchHHHHHHHHHH-----HH-hCCCEEEEeCCHHHHHHHHHHHHhhCC
Confidence 46678999999999996542211 11 233589999999999999999998864
No 104
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.28 E-value=0.022 Score=40.32 Aligned_cols=49 Identities=16% Similarity=0.299 Sum_probs=28.7
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcCcHHHHHHHHHH
Q psy9277 68 KGRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSPTRELAVQIQKV 119 (178)
Q Consensus 68 ~g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~Pt~~L~~q~~~~ 119 (178)
.|+.+++.||+|+|||...-. +...+... .+..+++ .+..++...+...
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~-i~~~~~~~-~g~~~~~-~~~~~~~~~~~~~ 85 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVA-TLKAIYEK-KGIRGYF-FDTKDLIFRLKHL 85 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHH-HHHHHHHH-SCCCCCE-EEHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH-HHHHHHHH-cCCeEEE-EEHHHHHHHHHHH
Confidence 378999999999999976532 33333212 2323333 4555565555443
No 105
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.17 E-value=0.017 Score=46.83 Aligned_cols=57 Identities=25% Similarity=0.281 Sum_probs=34.5
Q ss_pred cccccccccCCCCHHHHHHHHhCCCCCCcHHHH-HHHHH--HHcCCcEEEEcCCCChHHHHHH
Q psy9277 28 VEVVSTFDNMGLREDLLRGIYAYGFEKPSAIQQ-RSIKP--IVKGRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 28 ~~~~~~f~~~~l~~~i~~~l~~~g~~~~~~~Q~-~~i~~--i~~g~~v~v~aptGsGKTl~~l 87 (178)
..|..+|++.+=-+...+.|++. +. +|... +.+.. +.-.+.+++.||+|+|||+.+-
T Consensus 141 ~~p~v~~~dIgGl~~~k~~l~e~-v~--~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAk 200 (405)
T 4b4t_J 141 KVPDSTYDMVGGLTKQIKEIKEV-IE--LPVKHPELFESLGIAQPKGVILYGPPGTGKTLLAR 200 (405)
T ss_dssp CSCSCCGGGSCSCHHHHHHHHHH-TH--HHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHH
T ss_pred CCCCCCHHHhCCHHHHHHHHHHH-HH--HHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHH
Confidence 34678899997556666666542 11 22111 11111 2225899999999999997753
No 106
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.07 E-value=0.011 Score=48.40 Aligned_cols=57 Identities=25% Similarity=0.306 Sum_probs=34.1
Q ss_pred cccccccccCCCCHHHHHHHHhC---CCCCCcHHHHHHHHHHHcCCcEEEEcCCCChHHHHHH
Q psy9277 28 VEVVSTFDNMGLREDLLRGIYAY---GFEKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 28 ~~~~~~f~~~~l~~~i~~~l~~~---g~~~~~~~Q~~~i~~i~~g~~v~v~aptGsGKTl~~l 87 (178)
..+..+|++++=-+...+.|++. -+..|-.++.. -+.-.+.+++.||+|+|||+.+-
T Consensus 174 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~---g~~~prGvLL~GPPGtGKTllAk 233 (437)
T 4b4t_L 174 EQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRV---GIKPPKGVLLYGPPGTGKTLLAK 233 (437)
T ss_dssp ESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHH---CCCCCCEEEEESCTTSSHHHHHH
T ss_pred cCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhC---CCCCCCeEEEECCCCCcHHHHHH
Confidence 45677899997555555555432 01111111111 11225899999999999997753
No 107
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.91 E-value=0.018 Score=47.55 Aligned_cols=56 Identities=18% Similarity=0.230 Sum_probs=35.9
Q ss_pred cccccccccCCCCHHHHHHHHhCCCCCCcHHH-HHHHHH--HHcCCcEEEEcCCCChHHHHH
Q psy9277 28 VEVVSTFDNMGLREDLLRGIYAYGFEKPSAIQ-QRSIKP--IVKGRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 28 ~~~~~~f~~~~l~~~i~~~l~~~g~~~~~~~Q-~~~i~~--i~~g~~v~v~aptGsGKTl~~ 86 (178)
..|..+|++.+=-+.+.+.|++. +. +|.. -+.+.. +.-.+.+++.||+|+|||+.+
T Consensus 202 e~P~vt~~DIgGl~~~k~~L~e~-V~--~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 202 EKPDVTYSDVGGCKDQIEKLREV-VE--LPLLSPERFATLGIDPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp SSCSCCCSSCTTCHHHHHHHHHH-TH--HHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHH
T ss_pred CCCCCCHHHhccHHHHHHHHHHH-HH--HHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHH
Confidence 35668899998777777777643 11 1111 122222 223689999999999999765
No 108
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=94.85 E-value=0.22 Score=35.81 Aligned_cols=54 Identities=20% Similarity=0.266 Sum_probs=44.0
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccHHHHHHHhc----CCCcEEEeC
Q psy9277 100 ETQVLCLSPTRELAVQIQKVVLALGDFMNVQCHACIGGTNLSEDLRKLD----YGQHVVSGT 157 (178)
Q Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~IlV~T 157 (178)
+.++||.+++++-+..+++.+... ++.+..++|+.+..++...+. ...+|+|+|
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT 111 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT 111 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEc
Confidence 458999999999999999988765 788889999988776655443 357899999
No 109
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=94.83 E-value=0.38 Score=40.03 Aligned_cols=77 Identities=6% Similarity=0.024 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHHHhhhcCCCceEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccHHHHHHHhc----CCCcEEEe
Q psy9277 81 GKTATFSISILQSLDTQLRETQVLCLSPTRELAVQIQKVVLALGDFMNVQCHACIGGTNLSEDLRKLD----YGQHVVSG 156 (178)
Q Consensus 81 GKTl~~ll~il~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~IlV~ 156 (178)
.+....+-.+...+.....+.++||.++++.-+..+++.+..... .++.+..++|+.+..++...+. ...+|||+
T Consensus 320 ~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLva 398 (563)
T 3i5x_A 320 NSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVC 398 (563)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEE
T ss_pred hhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 333333333444444434567999999999999999999877643 2678888999988776655443 45799999
Q ss_pred Ch
Q psy9277 157 TP 158 (178)
Q Consensus 157 TP 158 (178)
|.
T Consensus 399 T~ 400 (563)
T 3i5x_A 399 TD 400 (563)
T ss_dssp CG
T ss_pred cc
Confidence 94
No 110
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=94.69 E-value=0.029 Score=38.36 Aligned_cols=21 Identities=10% Similarity=0.099 Sum_probs=17.5
Q ss_pred HHcCCcEEEEcCCCChHHHHH
Q psy9277 66 IVKGRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 66 i~~g~~v~v~aptGsGKTl~~ 86 (178)
...+.++++.|++|+|||..+
T Consensus 24 ~~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHHH
T ss_pred hCCCCcEEEECCCCccHHHHH
Confidence 345789999999999999654
No 111
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.67 E-value=0.018 Score=47.17 Aligned_cols=57 Identities=21% Similarity=0.166 Sum_probs=33.6
Q ss_pred cccccccccCCCCHHHHHHHHhC---CCCCCcHHHHHHHHHHHcCCcEEEEcCCCChHHHHHH
Q psy9277 28 VEVVSTFDNMGLREDLLRGIYAY---GFEKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 28 ~~~~~~f~~~~l~~~i~~~l~~~---g~~~~~~~Q~~~i~~i~~g~~v~v~aptGsGKTl~~l 87 (178)
..+..+|++.+=-+.+.+.|.+. -+..|-.++.. -+.-.+.+++.||+|+|||+.+-
T Consensus 165 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~---g~~~prGiLL~GPPGtGKT~lak 224 (428)
T 4b4t_K 165 EKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQI---GIDPPRGVLLYGPPGTGKTMLVK 224 (428)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHH---CCCCCCEEEEESCTTTTHHHHHH
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhC---CCCCCceEEEECCCCCCHHHHHH
Confidence 45667899987555555555431 01111111111 12235789999999999997753
No 112
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.65 E-value=0.036 Score=37.95 Aligned_cols=21 Identities=19% Similarity=0.158 Sum_probs=17.8
Q ss_pred HcCCcEEEEcCCCChHHHHHH
Q psy9277 67 VKGRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 67 ~~g~~v~v~aptGsGKTl~~l 87 (178)
..+.++++.||+|+|||..+-
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~ 42 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGAR 42 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHH
Confidence 357899999999999997663
No 113
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=94.51 E-value=0.039 Score=45.34 Aligned_cols=44 Identities=25% Similarity=0.308 Sum_probs=33.4
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcCcHHHHHHHHHHHH
Q psy9277 70 RDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSPTRELAVQIQKVVL 121 (178)
Q Consensus 70 ~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~ 121 (178)
+-.++.|+.|+|||....- .+. ....++++||++++.++.+.+.
T Consensus 162 ~v~~I~G~aGsGKTt~I~~----~~~----~~~~lVlTpT~~aa~~l~~kl~ 205 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEILS----RVN----FEEDLILVPGRQAAEMIRRRAN 205 (446)
T ss_dssp EEEEEEECTTSCHHHHHHH----HCC----TTTCEEEESCHHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHH----Hhc----cCCeEEEeCCHHHHHHHHHHhh
Confidence 4568999999999976532 111 1356999999999999888875
No 114
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=94.50 E-value=0.12 Score=36.98 Aligned_cols=71 Identities=14% Similarity=0.240 Sum_probs=43.2
Q ss_pred CChHHHHHHHHHHHHhhhcCCCceEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccHHHHHHHhc----CCCcEE
Q psy9277 79 GTGKTATFSISILQSLDTQLRETQVLCLSPTRELAVQIQKVVLALGDFMNVQCHACIGGTNLSEDLRKLD----YGQHVV 154 (178)
Q Consensus 79 GsGKTl~~ll~il~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~Il 154 (178)
.+.|-. .+.-++.. ...+.++||.++++.-+..+++.+... ++.+..++|+.+..++...+. ....|+
T Consensus 29 ~~~K~~-~L~~ll~~---~~~~~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vL 100 (185)
T 2jgn_A 29 ESDKRS-FLLDLLNA---TGKDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPIL 100 (185)
T ss_dssp GGGHHH-HHHHHHHH---C-CCSCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHHHHHHHHTSSSEE
T ss_pred cHHHHH-HHHHHHHh---cCCCCeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEE
Confidence 455643 33334332 224568999999999999999988764 788888998876655433332 357899
Q ss_pred EeC
Q psy9277 155 SGT 157 (178)
Q Consensus 155 V~T 157 (178)
|+|
T Consensus 101 vaT 103 (185)
T 2jgn_A 101 VAT 103 (185)
T ss_dssp EEE
T ss_pred EEc
Confidence 999
No 115
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=94.42 E-value=0.14 Score=39.68 Aligned_cols=55 Identities=18% Similarity=0.199 Sum_probs=43.7
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccHHHHHHHhc----CCCcEEEeC
Q psy9277 99 RETQVLCLSPTRELAVQIQKVVLALGDFMNVQCHACIGGTNLSEDLRKLD----YGQHVVSGT 157 (178)
Q Consensus 99 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~IlV~T 157 (178)
.+.++||.+++++-+..+++.+... ++.+..++|+.+..++...+. ...+|+|+|
T Consensus 27 ~~~~~LVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT 85 (300)
T 3i32_A 27 SPDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVAT 85 (300)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHTT----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEEC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEe
Confidence 3569999999999999888887544 788999999988766655443 357899999
No 116
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=94.35 E-value=0.52 Score=39.57 Aligned_cols=67 Identities=6% Similarity=0.047 Sum_probs=49.6
Q ss_pred HHHhhhcCCCceEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccHHHHHHHhc----CCCcEEEeCh
Q psy9277 91 LQSLDTQLRETQVLCLSPTRELAVQIQKVVLALGDFMNVQCHACIGGTNLSEDLRKLD----YGQHVVSGTP 158 (178)
Q Consensus 91 l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~IlV~TP 158 (178)
...+.....+.++||.++++.-+..+++.+..... .++.+..++|+.+..++...+. ...+|||+|-
T Consensus 279 ~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~-~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~ 349 (579)
T 3sqw_A 279 KKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD 349 (579)
T ss_dssp HHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG
T ss_pred HHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhc-CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc
Confidence 33333334567999999999999999999977643 2678888999988776554443 4578999994
No 117
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=94.23 E-value=0.019 Score=43.63 Aligned_cols=57 Identities=19% Similarity=0.243 Sum_probs=34.8
Q ss_pred ccccccccCCCCHHHHHHHHhCCCCCCcHHHHHHHHH--HHcCCcEEEEcCCCChHHHHHH
Q psy9277 29 EVVSTFDNMGLREDLLRGIYAYGFEKPSAIQQRSIKP--IVKGRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 29 ~~~~~f~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~--i~~g~~v~v~aptGsGKTl~~l 87 (178)
.+..+|+++.-.+...+.+.+.- ..+ ....+.+.. +..+.++++.||+|+|||...-
T Consensus 11 ~~~~~~~~i~G~~~~~~~l~~~~-~~~-~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~ 69 (285)
T 3h4m_A 11 RPNVRYEDIGGLEKQMQEIREVV-ELP-LKHPELFEKVGIEPPKGILLYGPPGTGKTLLAK 69 (285)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHT-HHH-HHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHH
T ss_pred CCCCCHHHhcCHHHHHHHHHHHH-HHH-hhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHH
Confidence 44567888887777777775421 100 011122222 2346789999999999997653
No 118
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=94.01 E-value=0.34 Score=38.19 Aligned_cols=56 Identities=9% Similarity=0.070 Sum_probs=44.3
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccHHHHHHHhc----CCCcEEEeCh
Q psy9277 99 RETQVLCLSPTRELAVQIQKVVLALGDFMNVQCHACIGGTNLSEDLRKLD----YGQHVVSGTP 158 (178)
Q Consensus 99 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~IlV~TP 158 (178)
...++||.+++++-+..+++.+... ++.+..++|+.+..++...+. ...+|+|+|.
T Consensus 257 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~ 316 (400)
T 1s2m_A 257 QINQAIIFCNSTNRVELLAKKITDL----GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD 316 (400)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS
T ss_pred CCCcEEEEEecHHHHHHHHHHHHhc----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC
Confidence 4568999999999999999988776 678888999988766554442 3468999993
No 119
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=93.84 E-value=0.24 Score=39.09 Aligned_cols=56 Identities=14% Similarity=0.073 Sum_probs=44.9
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccHHHHHHHhc----CCCcEEEeCh
Q psy9277 99 RETQVLCLSPTRELAVQIQKVVLALGDFMNVQCHACIGGTNLSEDLRKLD----YGQHVVSGTP 158 (178)
Q Consensus 99 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~IlV~TP 158 (178)
.+.++||.++++..+..+++.+... ++.+..++|+.+..++...+. ...+|+|+|.
T Consensus 265 ~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 324 (412)
T 3fht_A 265 TIAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN 324 (412)
T ss_dssp SSSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC
Confidence 4468999999999999999998766 678888999988776655442 3578999994
No 120
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=93.73 E-value=0.34 Score=38.38 Aligned_cols=56 Identities=13% Similarity=0.202 Sum_probs=44.9
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccHHHHHHHhc----CCCcEEEeCh
Q psy9277 99 RETQVLCLSPTRELAVQIQKVVLALGDFMNVQCHACIGGTNLSEDLRKLD----YGQHVVSGTP 158 (178)
Q Consensus 99 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~IlV~TP 158 (178)
.+.++||.+++++.+..+++.+... ++.+..++|+.+..++...+. ...+|+|+|.
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~ 334 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA 334 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHC----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC
Confidence 4568999999999999999988764 788899999988776654443 3578999994
No 121
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.70 E-value=0.03 Score=45.87 Aligned_cols=57 Identities=23% Similarity=0.300 Sum_probs=33.9
Q ss_pred ccccccccccCCCCHHHHHHHHhC---CCCCCcHHHHHHHHHHHcCCcEEEEcCCCChHHHHH
Q psy9277 27 DVEVVSTFDNMGLREDLLRGIYAY---GFEKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 27 ~~~~~~~f~~~~l~~~i~~~l~~~---g~~~~~~~Q~~~i~~i~~g~~v~v~aptGsGKTl~~ 86 (178)
+..+..+|++++=-+.+.+.|++. -+..|--++.. -+.-.+.+++.||+|+|||+.+
T Consensus 174 ~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~---Gi~~prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 174 DKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEM---GIKPPKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp ESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHH---TCCCCSEEEEESSTTTTHHHHH
T ss_pred ccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhC---CCCCCCCCceECCCCchHHHHH
Confidence 345678999987444444444331 11222222221 1222589999999999999765
No 122
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=93.62 E-value=0.097 Score=41.29 Aligned_cols=42 Identities=12% Similarity=-0.014 Sum_probs=26.3
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhc---CCCceEEEEcCcH
Q psy9277 69 GRDVIAQAQSGTGKTATFSISILQSLDTQ---LRETQVLCLSPTR 110 (178)
Q Consensus 69 g~~v~v~aptGsGKTl~~ll~il~~l~~~---~~~~~~lil~Pt~ 110 (178)
|.-+++.||+|+|||...+-.+....... ..+..++|+.-..
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 45689999999999987655444322211 0244777776543
No 123
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=93.58 E-value=0.36 Score=37.73 Aligned_cols=56 Identities=14% Similarity=0.049 Sum_probs=44.4
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccHHHHHHHhc----CCCcEEEeCh
Q psy9277 99 RETQVLCLSPTRELAVQIQKVVLALGDFMNVQCHACIGGTNLSEDLRKLD----YGQHVVSGTP 158 (178)
Q Consensus 99 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~IlV~TP 158 (178)
...++||.++++.-+..+++.++.. ++.+..++|+.+..++...+. ...+|+|+|.
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 301 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSE----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN 301 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhc----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC
Confidence 4568999999999999999988765 678888999988776555442 3468999994
No 124
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.57 E-value=0.099 Score=38.44 Aligned_cols=52 Identities=19% Similarity=0.189 Sum_probs=32.2
Q ss_pred HHcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcCcHHHHHHHHHHHH
Q psy9277 66 IVKGRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSPTRELAVQIQKVVL 121 (178)
Q Consensus 66 i~~g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~ 121 (178)
+..|.-+++.||+|+|||...+--+.... . .+..++|+.-.. ...++.+.+.
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~~~~-~--~~~~v~~~~~e~-~~~~~~~~~~ 71 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLWNGL-K--MGEPGIYVALEE-HPVQVRQNMA 71 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHHH-H--TTCCEEEEESSS-CHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHH-h--cCCeEEEEEccC-CHHHHHHHHH
Confidence 34578899999999999987554333332 2 344677776432 2345554444
No 125
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=93.54 E-value=0.023 Score=43.97 Aligned_cols=55 Identities=18% Similarity=0.294 Sum_probs=33.0
Q ss_pred cccccccCCCCHHHHHHHHhCCCCCCcHHHH-HHHHH--HHcCCcEEEEcCCCChHHHHHH
Q psy9277 30 VVSTFDNMGLREDLLRGIYAYGFEKPSAIQQ-RSIKP--IVKGRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 30 ~~~~f~~~~l~~~i~~~l~~~g~~~~~~~Q~-~~i~~--i~~g~~v~v~aptGsGKTl~~l 87 (178)
+..+|++++-.+.+.+.|.+. +. ++... +.+.. +..++.+++.||+|+|||...-
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~-v~--~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ 67 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQEL-VQ--YPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAK 67 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHH-HH--HHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHH-HH--HHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHH
Confidence 456788887667666666542 10 11100 11111 2346789999999999997653
No 126
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=93.31 E-value=0.12 Score=41.84 Aligned_cols=44 Identities=16% Similarity=0.327 Sum_probs=32.1
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcCcHHHHH
Q psy9277 68 KGRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSPTRELAV 114 (178)
Q Consensus 68 ~g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~Pt~~L~~ 114 (178)
...++++.|+||||||... ..++..+.. .+..++|+=|..++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~-~~li~~~~~--~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL-RELAYTGLL--RGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH-HHHHHHHHH--TTCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHHH-HHHHHHHHH--CCCcEEEEeCCCchhH
Confidence 4679999999999999874 334444333 3457888888888764
No 127
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=93.30 E-value=0.55 Score=36.78 Aligned_cols=56 Identities=14% Similarity=0.247 Sum_probs=44.2
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccHHHHHHHhc----CCCcEEEeCh
Q psy9277 99 RETQVLCLSPTRELAVQIQKVVLALGDFMNVQCHACIGGTNLSEDLRKLD----YGQHVVSGTP 158 (178)
Q Consensus 99 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~IlV~TP 158 (178)
.+.++||.+++++.+..+++.+... ++.+..++|+.+..++...+. ...+|+|+|.
T Consensus 249 ~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~ 308 (391)
T 1xti_A 249 EFNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN 308 (391)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESC
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECC
Confidence 4568999999999999999988765 778888999988766544443 3468999994
No 128
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=93.23 E-value=0.15 Score=39.78 Aligned_cols=52 Identities=13% Similarity=0.099 Sum_probs=32.8
Q ss_pred cccccccCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHc-----CCcEEEEcCCCChHHHHHH
Q psy9277 30 VVSTFDNMGLREDLLRGIYAYGFEKPSAIQQRSIKPIVK-----GRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 30 ~~~~f~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~i~~-----g~~v~v~aptGsGKTl~~l 87 (178)
+..+|++++=.+.+.+.|++.= -+|.+ .|.+.. .+.+++.||+|+|||...-
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v---~~p~~---~~~~~~~~~~~~~~iLL~GppGtGKT~la~ 63 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAV---ILPIK---FPHLFTGKRTPWRGILLFGPPGTGKSYLAK 63 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHH---HHHHH---CGGGSCTTCCCCSEEEEESSSSSCHHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHH---HHHHh---CHHHHhCCCCCCceEEEECCCCccHHHHHH
Confidence 4568999877777777765420 01111 122222 3789999999999997653
No 129
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.14 E-value=0.12 Score=37.03 Aligned_cols=18 Identities=22% Similarity=0.377 Sum_probs=15.8
Q ss_pred CcEEEEcCCCChHHHHHH
Q psy9277 70 RDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 70 ~~v~v~aptGsGKTl~~l 87 (178)
.++++.||+|+|||....
T Consensus 55 ~~~~l~G~~GtGKT~la~ 72 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLA 72 (202)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 789999999999997643
No 130
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=93.04 E-value=0.16 Score=42.30 Aligned_cols=43 Identities=16% Similarity=0.183 Sum_probs=30.2
Q ss_pred HHHHHHhCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCChHHHHH
Q psy9277 43 LLRGIYAYGFEKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 43 i~~~l~~~g~~~~~~~Q~~~i~~i~~g~~v~v~aptGsGKTl~~ 86 (178)
+.+.+. ..+..-...-..+...+..+.++++.||+|+|||...
T Consensus 16 l~~~l~-~~ivGq~~~i~~l~~al~~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 16 LSSSLE-KGLYERSHAIRLCLLAALSGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHH-TTCSSCHHHHHHHHHHHHHTCEEEEECCSSSSHHHHH
T ss_pred HHHHHH-hhhHHHHHHHHHHHHHHhcCCeeEeecCchHHHHHHH
Confidence 334443 2454555555566666777999999999999999765
No 131
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=92.86 E-value=0.46 Score=40.30 Aligned_cols=56 Identities=11% Similarity=0.044 Sum_probs=45.4
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccHHHHHHHhc----CCCcEEEeCh
Q psy9277 99 RETQVLCLSPTRELAVQIQKVVLALGDFMNVQCHACIGGTNLSEDLRKLD----YGQHVVSGTP 158 (178)
Q Consensus 99 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~IlV~TP 158 (178)
.+.++||.++++.-+.++++.+... ++.+..++|+.+..++...+. ...+|||+|-
T Consensus 266 ~~~~~IVf~~sr~~~e~la~~L~~~----g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~ 325 (591)
T 2v1x_A 266 KGQSGIIYCFSQKDSEQVTVSLQNL----GIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATV 325 (591)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECT
T ss_pred cCCCeEEEeCcHHHHHHHHHHHHHC----CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec
Confidence 4568999999999999999998765 788999999998776654443 3578999994
No 132
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=92.82 E-value=0.19 Score=42.01 Aligned_cols=41 Identities=17% Similarity=0.125 Sum_probs=27.0
Q ss_pred HHHHHhCCCCCCcHHHHHHH-HHHHcCCcEEEEcCCCChHHHHH
Q psy9277 44 LRGIYAYGFEKPSAIQQRSI-KPIVKGRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 44 ~~~l~~~g~~~~~~~Q~~~i-~~i~~g~~v~v~aptGsGKTl~~ 86 (178)
+..|.+.|. +++.+..-+ -.+..|.+++++||||||||...
T Consensus 236 ~~~l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL 277 (511)
T 2oap_1 236 PIDLIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTTTL 277 (511)
T ss_dssp HHHHHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHHH
T ss_pred hhhHHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 444556663 233333333 34567999999999999999653
No 133
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=92.74 E-value=0.45 Score=37.66 Aligned_cols=56 Identities=14% Similarity=0.077 Sum_probs=44.1
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccHHHHHHHhc----CCCcEEEeCh
Q psy9277 99 RETQVLCLSPTRELAVQIQKVVLALGDFMNVQCHACIGGTNLSEDLRKLD----YGQHVVSGTP 158 (178)
Q Consensus 99 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~IlV~TP 158 (178)
...++||.++++..+..+++.+... ++.+..++|+.+..++...+. ...+|+|+|.
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~ 334 (410)
T 2j0s_A 275 TITQAVIFCNTKRKVDWLTEKMREA----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD 334 (410)
T ss_dssp TSSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG
T ss_pred CCCcEEEEEcCHHHHHHHHHHHHhC----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC
Confidence 3458999999999999999888765 678888999988766554443 3578999994
No 134
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=92.67 E-value=0.12 Score=38.54 Aligned_cols=56 Identities=20% Similarity=0.236 Sum_probs=31.7
Q ss_pred ccccccccCCCCHHHHHHHHhCC--CCCCcHHHHHHHHHHHcCCcEEEEcCCCChHHHHHH
Q psy9277 29 EVVSTFDNMGLREDLLRGIYAYG--FEKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 29 ~~~~~f~~~~l~~~i~~~l~~~g--~~~~~~~Q~~~i~~i~~g~~v~v~aptGsGKTl~~l 87 (178)
.+..+|+++.-.+.+.+.+.+.- +..+..++.. .....+++++.||+|+|||...-
T Consensus 6 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~vll~G~~GtGKT~la~ 63 (257)
T 1lv7_A 6 QIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKL---GGKIPKGVLMVGPPGTGKTLLAK 63 (257)
T ss_dssp SSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC--------CCCCEEEEECCTTSCHHHHHH
T ss_pred CCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHc---CCCCCCeEEEECcCCCCHHHHHH
Confidence 34568888877777776664320 0000000000 01124679999999999997653
No 135
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=92.47 E-value=0.23 Score=39.12 Aligned_cols=20 Identities=20% Similarity=0.338 Sum_probs=17.0
Q ss_pred cCCcEEEEcCCCChHHHHHH
Q psy9277 68 KGRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 68 ~g~~v~v~aptGsGKTl~~l 87 (178)
.+.++++.||+|+|||..+-
T Consensus 50 ~~~~vll~GppGtGKT~la~ 69 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAE 69 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 35789999999999998753
No 136
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=92.37 E-value=0.38 Score=36.47 Aligned_cols=19 Identities=21% Similarity=0.426 Sum_probs=16.5
Q ss_pred CCcEEEEcCCCChHHHHHH
Q psy9277 69 GRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 69 g~~v~v~aptGsGKTl~~l 87 (178)
..++++.||+|+|||...-
T Consensus 50 ~~~vll~G~~GtGKT~la~ 68 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIAR 68 (310)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 6789999999999997653
No 137
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=92.33 E-value=0.36 Score=37.42 Aligned_cols=44 Identities=14% Similarity=0.282 Sum_probs=26.4
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhh-hcCCCceEEEEcCcHHHHHHH
Q psy9277 69 GRDVIAQAQSGTGKTATFSISILQSLD-TQLRETQVLCLSPTRELAVQI 116 (178)
Q Consensus 69 g~~v~v~aptGsGKTl~~ll~il~~l~-~~~~~~~~lil~Pt~~L~~q~ 116 (178)
+.++++.||+|+|||.... .+...+. . .+..++++. ..+++.++
T Consensus 152 ~~~lll~G~~GtGKT~La~-aia~~~~~~--~g~~v~~~~-~~~l~~~l 196 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLA-AMAHELSEK--KGVSTTLLH-FPSFAIDV 196 (308)
T ss_dssp CCEEEEECSTTSSHHHHHH-HHHHHHHHH--SCCCEEEEE-HHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH-HHHHHHHHh--cCCcEEEEE-HHHHHHHH
Confidence 5899999999999997654 3333333 3 233444443 23454443
No 138
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=92.26 E-value=0.7 Score=38.47 Aligned_cols=56 Identities=11% Similarity=0.050 Sum_probs=44.8
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccHHHHHHHhc----CCCcEEEeCh
Q psy9277 99 RETQVLCLSPTRELAVQIQKVVLALGDFMNVQCHACIGGTNLSEDLRKLD----YGQHVVSGTP 158 (178)
Q Consensus 99 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~IlV~TP 158 (178)
.+.++||.++++.-+..+++.++.. ++.+..++|+.+..++..... ...+|+|+|.
T Consensus 235 ~~~~~IVf~~sr~~~e~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~ 294 (523)
T 1oyw_A 235 RGKSGIIYCNSRAKVEDTAARLQSK----GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATV 294 (523)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECT
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHC----CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec
Confidence 4568999999999999999988765 788899999988766544332 3578999995
No 139
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=91.48 E-value=0.025 Score=39.79 Aligned_cols=56 Identities=11% Similarity=0.064 Sum_probs=42.0
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccHHHHHHHhc----CCCcEEEeCh
Q psy9277 99 RETQVLCLSPTRELAVQIQKVVLALGDFMNVQCHACIGGTNLSEDLRKLD----YGQHVVSGTP 158 (178)
Q Consensus 99 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~IlV~TP 158 (178)
.+.++||.++++..+..+++.+... ++.+..++|+.+..++...+. ...+|+|+|.
T Consensus 29 ~~~~~iVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~ 88 (170)
T 2yjt_D 29 EATRSIVFVRKRERVHELANWLREA----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD 88 (170)
Confidence 4468999999999999988887654 677888888877665544443 2468999983
No 140
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.24 E-value=0.14 Score=37.51 Aligned_cols=33 Identities=21% Similarity=0.179 Sum_probs=27.2
Q ss_pred CcHHHHHHHHHHHcCCcEEEEcCCCChHHHHHH
Q psy9277 55 PSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 55 ~~~~Q~~~i~~i~~g~~v~v~aptGsGKTl~~l 87 (178)
-+.-|..++..+..|.-+.+.||+|+|||..+-
T Consensus 8 k~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl~ 40 (208)
T 3b85_A 8 KTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLAM 40 (208)
T ss_dssp CSHHHHHHHHHHHHCSEEEEECCTTSSTTHHHH
T ss_pred CCHhHHHHHHhccCCCEEEEECCCCCCHHHHHH
Confidence 345567788888889999999999999997653
No 141
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=92.20 E-value=0.17 Score=39.64 Aligned_cols=49 Identities=29% Similarity=0.245 Sum_probs=29.7
Q ss_pred ccccccccccCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHc----CCcEEEEcCCCChHHHHHH
Q psy9277 27 DVEVVSTFDNMGLREDLLRGIYAYGFEKPSAIQQRSIKPIVK----GRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 27 ~~~~~~~f~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~i~~----g~~v~v~aptGsGKTl~~l 87 (178)
..++..+|+++--.+...+.+.. ....+.. ++++++.||+|+|||...-
T Consensus 36 ~~~p~~~~~~ivG~~~~~~~l~~------------l~~~~~~~~~~~~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 36 ALEPRQASQGMVGQLAARRAAGV------------VLEMIREGKIAGRAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp TSCBCSEETTEESCHHHHHHHHH------------HHHHHHTTCCTTCEEEEEESTTSSHHHHHH
T ss_pred ccCcCcchhhccChHHHHHHHHH------------HHHHHHcCCCCCCEEEEECCCCCCHHHHHH
Confidence 34555557766555555444321 1122222 4689999999999997654
No 142
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=92.10 E-value=0.085 Score=39.38 Aligned_cols=56 Identities=14% Similarity=0.062 Sum_probs=33.3
Q ss_pred cccccccccCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHc--CCcEEEEcCCCChHHHHH
Q psy9277 28 VEVVSTFDNMGLREDLLRGIYAYGFEKPSAIQQRSIKPIVK--GRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 28 ~~~~~~f~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~i~~--g~~v~v~aptGsGKTl~~ 86 (178)
..+..+|+++.-.+.....+++.-.. . -....+..+-- .+.+++.||+|+|||...
T Consensus 9 ~~~~~~~~~i~g~~~~~~~l~~l~~~--~-~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 9 EAPKVTFKDVAGAEEAKEELKEIVEF--L-KNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp CCCSCCGGGCCSCHHHHHHHHHHHHH--H-HCHHHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHH--H-HCHHHHHHcCCCCCCeEEEECCCCCCHHHHH
Confidence 34567888887777666666543110 0 01122322211 356999999999999664
No 143
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=92.07 E-value=0.028 Score=42.98 Aligned_cols=55 Identities=18% Similarity=0.216 Sum_probs=28.7
Q ss_pred cccccccCCCCHHHHHHHHhCCCCCCcHHH-HHHHHHHH--cCCcEEEEcCCCChHHHHHH
Q psy9277 30 VVSTFDNMGLREDLLRGIYAYGFEKPSAIQ-QRSIKPIV--KGRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 30 ~~~~f~~~~l~~~i~~~l~~~g~~~~~~~Q-~~~i~~i~--~g~~v~v~aptGsGKTl~~l 87 (178)
+..+|++++--+.+.+.|++.= .+++. ..++..+- -.+.+++.||+|+|||...-
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i---~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLak 62 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAI---LAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAK 62 (274)
T ss_dssp -------CCHHHHHHHHHHHHH---THHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHH---HHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHH
Confidence 4567899887777777775421 12221 12232221 14569999999999997653
No 144
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=92.07 E-value=0.031 Score=43.61 Aligned_cols=53 Identities=11% Similarity=0.116 Sum_probs=34.0
Q ss_pred ccccccccCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHc-----CCcEEEEcCCCChHHHHHH
Q psy9277 29 EVVSTFDNMGLREDLLRGIYAYGFEKPSAIQQRSIKPIVK-----GRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 29 ~~~~~f~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~i~~-----g~~v~v~aptGsGKTl~~l 87 (178)
.+..+|+++.-.+.+.+.|++.= . ++. ..|.+.. .+++++.||+|+|||...-
T Consensus 12 ~~~~~~~di~G~~~~~~~l~~~i-~--~~~---~~~~~~~~~~~~~~~vLl~GppGtGKT~la~ 69 (322)
T 3eie_A 12 KPNVKWEDVAGLEGAKEALKEAV-I--LPV---KFPHLFKGNRKPTSGILLYGPPGTGKSYLAK 69 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHT-H--HHH---HCGGGCCTTCCCCCEEEEECSSSSCHHHHHH
T ss_pred CCCCCHHHhcChHHHHHHHHHHH-H--HHH---hCHHHHhcCCCCCCeEEEECCCCCcHHHHHH
Confidence 34567899887777877776431 0 111 1122222 4689999999999997753
No 145
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=92.05 E-value=0.28 Score=35.03 Aligned_cols=39 Identities=15% Similarity=0.183 Sum_probs=25.6
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcCcH
Q psy9277 69 GRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSPTR 110 (178)
Q Consensus 69 g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~Pt~ 110 (178)
|+-.++.||.|+|||...+--+. ++.. .+.+++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~-~~~~--~g~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVE-IYKL--GKKKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH-HHHH--TTCEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHHHHHH-HHHH--CCCeEEEEeecc
Confidence 55678999999999987653333 2222 344677777763
No 146
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=91.96 E-value=0.61 Score=37.21 Aligned_cols=75 Identities=17% Similarity=0.214 Sum_probs=48.0
Q ss_pred CChHHHHHHHHHHHHhhhcCCCceEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEc--------CccHHHHHHHhc--
Q psy9277 79 GTGKTATFSISILQSLDTQLRETQVLCLSPTRELAVQIQKVVLALGDFMNVQCHACIG--------GTNLSEDLRKLD-- 148 (178)
Q Consensus 79 GsGKTl~~ll~il~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g--------~~~~~~~~~~~~-- 148 (178)
.++|... +.-++........+.++||.++++.-+..+++.+... ++.+..++| +.+..++...+.
T Consensus 341 ~~~k~~~-l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F 415 (494)
T 1wp9_A 341 DHPKMDK-LKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKD----GIKAKRFVGQASKENDRGLSQREQKLILDEF 415 (494)
T ss_dssp SCHHHHH-HHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHT----TCCEEEECCSSCC-------CCHHHHHHHHH
T ss_pred CChHHHH-HHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHc----CCCcEEEeccccccccccCCHHHHHHHHHHH
Confidence 4455432 3344444332235679999999999999999988766 788888888 555444433332
Q ss_pred --CCCcEEEeCh
Q psy9277 149 --YGQHVVSGTP 158 (178)
Q Consensus 149 --~~~~IlV~TP 158 (178)
..++|+|+|.
T Consensus 416 ~~~~~~vLv~T~ 427 (494)
T 1wp9_A 416 ARGEFNVLVATS 427 (494)
T ss_dssp HHTSCSEEEECG
T ss_pred hcCCceEEEECC
Confidence 3578999993
No 147
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=91.95 E-value=0.57 Score=36.18 Aligned_cols=56 Identities=13% Similarity=0.141 Sum_probs=44.2
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccHHHHHHHhc----CCCcEEEeCh
Q psy9277 99 RETQVLCLSPTRELAVQIQKVVLALGDFMNVQCHACIGGTNLSEDLRKLD----YGQHVVSGTP 158 (178)
Q Consensus 99 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~IlV~TP 158 (178)
.+.++||.+++++-+..+++.++.. ++.+..++|+.+..++...+. ...+|+|+|.
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~ 296 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDI----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD 296 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC
Confidence 4568999999999999999988765 778888999988766554432 3568999994
No 148
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=91.88 E-value=0.088 Score=36.69 Aligned_cols=19 Identities=26% Similarity=0.408 Sum_probs=16.2
Q ss_pred CCcEEEEcCCCChHHHHHH
Q psy9277 69 GRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 69 g~~v~v~aptGsGKTl~~l 87 (178)
+.++++.||+|+|||...-
T Consensus 43 ~~~~ll~G~~G~GKT~l~~ 61 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVE 61 (195)
T ss_dssp SCEEEEECCTTSCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 4789999999999997653
No 149
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=91.74 E-value=0.25 Score=36.66 Aligned_cols=39 Identities=21% Similarity=0.219 Sum_probs=26.4
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcCcH
Q psy9277 69 GRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSPTR 110 (178)
Q Consensus 69 g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~Pt~ 110 (178)
|.-+++.|++|+|||...+-.+. ++.. .+.+++++.|..
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~-r~~~--~g~kVli~~~~~ 50 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLH-RLEY--ADVKYLVFKPKI 50 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHH-HHHH--TTCCEEEEEECC
T ss_pred cEEEEEECCCCCcHHHHHHHHHH-HHHh--cCCEEEEEEecc
Confidence 66788899999999977654433 3332 345677776654
No 150
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=91.73 E-value=1.3 Score=31.34 Aligned_cols=17 Identities=41% Similarity=0.524 Sum_probs=14.8
Q ss_pred CcEEEEcCCCChHHHHH
Q psy9277 70 RDVIAQAQSGTGKTATF 86 (178)
Q Consensus 70 ~~v~v~aptGsGKTl~~ 86 (178)
.++++.||+|+|||...
T Consensus 39 ~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATA 55 (226)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 46999999999999764
No 151
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=91.71 E-value=0.3 Score=39.59 Aligned_cols=54 Identities=11% Similarity=-0.026 Sum_probs=40.3
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccHHHHHHHh-cCCCcEEEeCh
Q psy9277 100 ETQVLCLSPTRELAVQIQKVVLALGDFMNVQCHACIGGTNLSEDLRKL-DYGQHVVSGTP 158 (178)
Q Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~IlV~TP 158 (178)
+.+++|++|+++-+..+++.++.. ++++..++|+.... ..... ....+|||+|-
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~r~~-~~~~f~~g~~~vLVaT~ 225 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRKTFES-EYPKCKSEKWDFVITTD 225 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTTHHH-HTTHHHHSCCSEEEECG
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCccHHH-HHHhhcCCCCeEEEECc
Confidence 458999999999999999988776 77888888874332 22222 24579999994
No 152
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=91.61 E-value=0.22 Score=36.52 Aligned_cols=50 Identities=20% Similarity=0.268 Sum_probs=30.1
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcCcHHHHHHHHHHH
Q psy9277 68 KGRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSPTRELAVQIQKVV 120 (178)
Q Consensus 68 ~g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~Pt~~L~~q~~~~~ 120 (178)
.|.-+++.|++|+|||...+--+.+.... .+..++|++-. .-..++.+.+
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~--~~~~v~~~s~E-~~~~~~~~~~ 78 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEE--YGEPGVFVTLE-ERARDLRREM 78 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHH--HCCCEEEEESS-SCHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHh--cCCCceeeccc-CCHHHHHHHH
Confidence 46789999999999997765444443332 23356666533 2234444444
No 153
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=91.49 E-value=0.37 Score=37.30 Aligned_cols=43 Identities=19% Similarity=0.208 Sum_probs=27.9
Q ss_pred ccccCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHH----cCCcEEEEcCCCChHHHHHH
Q psy9277 33 TFDNMGLREDLLRGIYAYGFEKPSAIQQRSIKPIV----KGRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 33 ~f~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~i~----~g~~v~v~aptGsGKTl~~l 87 (178)
+|+++--.+..++.+.. ++.... ...++++.||+|+|||...-
T Consensus 27 ~~~~iiG~~~~~~~l~~------------~l~~~~~~~~~~~~vll~G~~GtGKT~la~ 73 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNV------------FIAAAKKRNECLDHILFSGPAGLGKTTLAN 73 (338)
T ss_dssp SGGGCCSCHHHHHHHHH------------HHHHHHHTTSCCCCEEEECSTTSSHHHHHH
T ss_pred CHHHhCChHHHHHHHHH------------HHHHHHhcCCCCCeEEEECcCCCCHHHHHH
Confidence 67777666666655532 111211 23589999999999997754
No 154
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=91.45 E-value=0.19 Score=38.93 Aligned_cols=31 Identities=19% Similarity=0.319 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHcCCcEEEEcCCCChHHHHHH
Q psy9277 57 AIQQRSIKPIVKGRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 57 ~~Q~~~i~~i~~g~~v~v~aptGsGKTl~~l 87 (178)
..-..+...+..+.++++.||+|+|||...-
T Consensus 34 ~~~~~l~~~l~~~~~vll~G~pGtGKT~la~ 64 (331)
T 2r44_A 34 YMINRLLIGICTGGHILLEGVPGLAKTLSVN 64 (331)
T ss_dssp HHHHHHHHHHHHTCCEEEESCCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCeEEEECCCCCcHHHHHH
Confidence 3333344455568999999999999997653
No 155
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=91.43 E-value=0.1 Score=36.97 Aligned_cols=20 Identities=10% Similarity=0.242 Sum_probs=16.7
Q ss_pred cCCcEEEEcCCCChHHHHHH
Q psy9277 68 KGRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 68 ~g~~v~v~aptGsGKTl~~l 87 (178)
.|+-++++||+|+|||...-
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~ 23 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKN 23 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 47789999999999997653
No 156
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=91.41 E-value=0.62 Score=35.54 Aligned_cols=44 Identities=11% Similarity=0.121 Sum_probs=32.3
Q ss_pred HHHHHHHHhCCCCCCcHHH-HHHHHHHHcCC-----cEEEEcCCCChHHHHHH
Q psy9277 41 EDLLRGIYAYGFEKPSAIQ-QRSIKPIVKGR-----DVIAQAQSGTGKTATFS 87 (178)
Q Consensus 41 ~~i~~~l~~~g~~~~~~~Q-~~~i~~i~~g~-----~v~v~aptGsGKTl~~l 87 (178)
.++.+-|+-.||. +++ ..++..+++++ .+++.||+|+|||+.+.
T Consensus 73 n~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 73 NRIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp CHHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 3788888877874 444 33455666654 59999999999998876
No 157
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=91.41 E-value=0.62 Score=37.62 Aligned_cols=27 Identities=7% Similarity=0.160 Sum_probs=21.7
Q ss_pred cccccccccCCCCHHHHHHHHhCCCCC
Q psy9277 28 VEVVSTFDNMGLREDLLRGIYAYGFEK 54 (178)
Q Consensus 28 ~~~~~~f~~~~l~~~i~~~l~~~g~~~ 54 (178)
+.++..+...|+++..++.|++.||..
T Consensus 80 ~~~~~~l~~~gi~~~~~~~L~~ag~~t 106 (400)
T 3lda_A 80 FVPIEKLQVNGITMADVKKLRESGLHT 106 (400)
T ss_dssp SCBGGGGCCTTCCHHHHHHHHHTTCCB
T ss_pred ccCHHHHHhCCCCHHHHHHHHHcCCCc
Confidence 345667777889999999999999854
No 158
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=91.40 E-value=0.19 Score=37.62 Aligned_cols=19 Identities=26% Similarity=0.356 Sum_probs=16.6
Q ss_pred cCCcEEEEcCCCChHHHHH
Q psy9277 68 KGRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 68 ~g~~v~v~aptGsGKTl~~ 86 (178)
.+.++++.||+|+|||...
T Consensus 28 ~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp SCSCEEEECCTTSCHHHHH
T ss_pred CCCCEEEECCCCCcHHHHH
Confidence 4789999999999999664
No 159
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=91.37 E-value=0.94 Score=37.11 Aligned_cols=86 Identities=17% Similarity=0.175 Sum_probs=45.0
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEc--CcHHHHHHHHHHHHHhccCCCceEEEEEcCccHHH----H
Q psy9277 70 RDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLS--PTRELAVQIQKVVLALGDFMNVQCHACIGGTNLSE----D 143 (178)
Q Consensus 70 ~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~--Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~----~ 143 (178)
.-+++.+++|+|||....--+ ..+.. .+.+++++. |.+.-+.++ ++.+....++.+.....+.+... .
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA-~~l~~--~G~kVllv~~D~~R~aa~eq---L~~~~~~~gvpv~~~~~~~dp~~i~~~a 174 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLA-RYFQK--RGYKVGVVCSDTWRPGAYHQ---LRQLLDRYHIEVFGNPQEKDAIKLAKEG 174 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHH-HHHHT--TTCCEEEEECCCSSTHHHHH---HHHHHGGGTCEEECCTTCCCHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHH-HHHHH--CCCeEEEEeCCCcchhHHHH---HHHHHHhcCCcEEecCCCCCHHHHHHHH
Confidence 368899999999998764322 22332 345666665 445544333 33444455665543333322211 1
Q ss_pred HHHh-cCCCc-EEEeChHHH
Q psy9277 144 LRKL-DYGQH-VVSGTPGRV 161 (178)
Q Consensus 144 ~~~~-~~~~~-IlV~TP~~l 161 (178)
.... .+++| |+|=||+++
T Consensus 175 l~~a~~~~~DvVIIDTaGrl 194 (443)
T 3dm5_A 175 VDYFKSKGVDIIIVDTAGRH 194 (443)
T ss_dssp HHHHHHTTCSEEEEECCCCS
T ss_pred HHHHHhCCCCEEEEECCCcc
Confidence 1121 23465 456788764
No 160
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=91.25 E-value=0.18 Score=36.34 Aligned_cols=17 Identities=35% Similarity=0.663 Sum_probs=14.2
Q ss_pred CcEEEEcCCCChHHHHH
Q psy9277 70 RDVIAQAQSGTGKTATF 86 (178)
Q Consensus 70 ~~v~v~aptGsGKTl~~ 86 (178)
+-++++||+|+|||...
T Consensus 2 RpIVi~GPSG~GK~Tl~ 18 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45899999999999653
No 161
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=91.25 E-value=0.13 Score=40.97 Aligned_cols=22 Identities=23% Similarity=0.484 Sum_probs=18.6
Q ss_pred HHHcCCcEEEEcCCCChHHHHH
Q psy9277 65 PIVKGRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 65 ~i~~g~~v~v~aptGsGKTl~~ 86 (178)
.+..|..+.++||||||||...
T Consensus 171 ~i~~G~~i~ivG~sGsGKSTll 192 (361)
T 2gza_A 171 AVQLERVIVVAGETGSGKTTLM 192 (361)
T ss_dssp HHHTTCCEEEEESSSSCHHHHH
T ss_pred HHhcCCEEEEECCCCCCHHHHH
Confidence 4556999999999999999654
No 162
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=91.24 E-value=0.11 Score=37.82 Aligned_cols=20 Identities=10% Similarity=0.094 Sum_probs=17.1
Q ss_pred cCCcEEEEcCCCChHHHHHH
Q psy9277 68 KGRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 68 ~g~~v~v~aptGsGKTl~~l 87 (178)
.+..+++.||+|+|||....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~ 70 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIH 70 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 46899999999999997653
No 163
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=91.19 E-value=0.041 Score=41.60 Aligned_cols=19 Identities=26% Similarity=0.244 Sum_probs=16.1
Q ss_pred CCcEEEEcCCCChHHHHHH
Q psy9277 69 GRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 69 g~~v~v~aptGsGKTl~~l 87 (178)
..++++.||+|+|||...-
T Consensus 64 ~~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEEECSTTSSHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 3589999999999997754
No 164
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=91.02 E-value=0.56 Score=47.20 Aligned_cols=48 Identities=17% Similarity=0.170 Sum_probs=34.4
Q ss_pred CCHHHHHHHHhCCCCCCcHHHHH-HHH---HHHcCCcEEEEcCCCChHHHHHH
Q psy9277 39 LREDLLRGIYAYGFEKPSAIQQR-SIK---PIVKGRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 39 l~~~i~~~l~~~g~~~~~~~Q~~-~i~---~i~~g~~v~v~aptGsGKTl~~l 87 (178)
|...+.+.+.+.|+. +++.+.. +++ .+.....+++.||||||||.++-
T Consensus 873 l~~ai~~~~~~~~L~-~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~ 924 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHLV-TKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWE 924 (3245)
T ss_dssp HHHHHHHHHHHTTCC-CCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHH
T ss_pred HHHHHHHHHHHcCCc-cCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHH
Confidence 445677777888885 5555443 332 23347899999999999999974
No 165
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=90.99 E-value=0.36 Score=38.16 Aligned_cols=59 Identities=19% Similarity=0.103 Sum_probs=39.4
Q ss_pred hcCCCceEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccHHHHHHHhc---C-CCcEEEeCh
Q psy9277 96 TQLRETQVLCLSPTRELAVQIQKVVLALGDFMNVQCHACIGGTNLSEDLRKLD---Y-GQHVVSGTP 158 (178)
Q Consensus 96 ~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~-~~~IlV~TP 158 (178)
......++||.+++++.+..+++.+... ++.+..++|+.+..++...+. + ..+|+|+|.
T Consensus 276 ~~~~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~ 338 (414)
T 3eiq_A 276 ETLTITQAVIFINTRRKVDWLTEKMHAR----DFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTD 338 (414)
T ss_dssp HSSCCSSCEEECSCHHHHHHHHHHHHTT----TCCCEEC---CHHHHHHHHHHHHSCC---CEEECS
T ss_pred HhCCCCcEEEEeCCHHHHHHHHHHHHhc----CCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECC
Confidence 3334568999999999999998888654 678888899887766544442 2 468999984
No 166
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=90.93 E-value=0.13 Score=36.91 Aligned_cols=21 Identities=19% Similarity=0.091 Sum_probs=17.4
Q ss_pred HcCCcEEEEcCCCChHHHHHH
Q psy9277 67 VKGRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 67 ~~g~~v~v~aptGsGKTl~~l 87 (178)
..++.++++|++|||||...-
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~ 43 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGK 43 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHH
Confidence 357899999999999997753
No 167
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=90.86 E-value=0.2 Score=39.22 Aligned_cols=26 Identities=8% Similarity=0.084 Sum_probs=19.5
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhh
Q psy9277 69 GRDVIAQAQSGTGKTATFSISILQSLD 95 (178)
Q Consensus 69 g~~v~v~aptGsGKTl~~ll~il~~l~ 95 (178)
+.++++.||+|+|||.+.- .++..+.
T Consensus 45 ~~~lli~GpPGTGKT~~v~-~v~~~L~ 70 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLVN-DVMDELI 70 (318)
T ss_dssp CCEEEEECCCSHHHHHHHH-HHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHH
Confidence 5789999999999997754 3444443
No 168
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=90.83 E-value=0.091 Score=36.58 Aligned_cols=19 Identities=32% Similarity=0.415 Sum_probs=16.2
Q ss_pred CCcEEEEcCCCChHHHHHH
Q psy9277 69 GRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 69 g~~v~v~aptGsGKTl~~l 87 (178)
..++++.||+|+|||....
T Consensus 43 ~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp SCEEEEESCGGGCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 5689999999999997653
No 169
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=90.78 E-value=0.12 Score=39.54 Aligned_cols=19 Identities=26% Similarity=0.244 Sum_probs=16.1
Q ss_pred CCcEEEEcCCCChHHHHHH
Q psy9277 69 GRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 69 g~~v~v~aptGsGKTl~~l 87 (178)
+.++++.||+|+|||...-
T Consensus 67 ~~~vll~G~~GtGKT~la~ 85 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVAL 85 (309)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4579999999999997753
No 170
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=90.75 E-value=1.2 Score=35.99 Aligned_cols=53 Identities=13% Similarity=0.058 Sum_probs=42.8
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccHHHHHHHhc----CCCcEEEeCh
Q psy9277 102 QVLCLSPTRELAVQIQKVVLALGDFMNVQCHACIGGTNLSEDLRKLD----YGQHVVSGTP 158 (178)
Q Consensus 102 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~IlV~TP 158 (178)
.+||.++++.-+..+++.+... ++.+..++|+.+..++...+. ...+|+|+|.
T Consensus 302 ~~lVF~~t~~~a~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~ 358 (434)
T 2db3_A 302 GTIVFVETKRGADFLASFLSEK----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS 358 (434)
T ss_dssp TEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG
T ss_pred CEEEEEeCcHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch
Confidence 4999999999999999888765 788889999988776655443 3478999994
No 171
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=90.66 E-value=0.31 Score=38.88 Aligned_cols=42 Identities=24% Similarity=0.407 Sum_probs=29.0
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcCcHHH
Q psy9277 68 KGRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSPTREL 112 (178)
Q Consensus 68 ~g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~Pt~~L 112 (178)
.+.++++.|+||+|||...-.-+.+. .. .+.+++++=|..+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~-~~--~~~~~~~~D~~~~~ 75 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLRE-YM--QGSRVIIIDPEREY 75 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH-HT--TTCCEEEEESSCCS
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHH-HH--CCCEEEEEeCCcCH
Confidence 56799999999999997654433332 22 45577777777553
No 172
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=90.65 E-value=0.72 Score=35.96 Aligned_cols=33 Identities=24% Similarity=0.352 Sum_probs=24.0
Q ss_pred cHHHHHHHHHHH----cCC---cEEEEcCCCChHHHHHHH
Q psy9277 56 SAIQQRSIKPIV----KGR---DVIAQAQSGTGKTATFSI 88 (178)
Q Consensus 56 ~~~Q~~~i~~i~----~g~---~v~v~aptGsGKTl~~ll 88 (178)
.|+|.+++..+. +|+ .+++.||.|+|||.....
T Consensus 4 ~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~ 43 (334)
T 1a5t_A 4 YPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYA 43 (334)
T ss_dssp CGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHH
T ss_pred CCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHH
Confidence 567777766554 343 489999999999977643
No 173
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=90.63 E-value=0.37 Score=37.34 Aligned_cols=24 Identities=21% Similarity=0.135 Sum_probs=18.9
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHH
Q psy9277 69 GRDVIAQAQSGTGKTATFSISILQ 92 (178)
Q Consensus 69 g~~v~v~aptGsGKTl~~ll~il~ 92 (178)
|.-+++.|++|+|||...+-.+.+
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999876654443
No 174
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=90.63 E-value=0.83 Score=45.44 Aligned_cols=48 Identities=23% Similarity=0.211 Sum_probs=34.0
Q ss_pred CCHHHHHHHHhCCCCCCcHHHHH-HH---HHHHcCCcEEEEcCCCChHHHHHH
Q psy9277 39 LREDLLRGIYAYGFEKPSAIQQR-SI---KPIVKGRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 39 l~~~i~~~l~~~g~~~~~~~Q~~-~i---~~i~~g~~v~v~aptGsGKTl~~l 87 (178)
+...+.+.+.+.|+. +++.+.. ++ ..+.....+++.||||||||.++-
T Consensus 890 l~~~i~~~~~~~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~ 941 (2695)
T 4akg_A 890 IVQCLKDAGQRSGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWK 941 (2695)
T ss_dssp HHHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHH
Confidence 445677777788875 5665532 22 334458899999999999999874
No 175
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=90.62 E-value=0.38 Score=39.19 Aligned_cols=54 Identities=9% Similarity=-0.042 Sum_probs=38.2
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccHHHHHHHhc-CCCcEEEeCh
Q psy9277 100 ETQVLCLSPTRELAVQIQKVVLALGDFMNVQCHACIGGTNLSEDLRKLD-YGQHVVSGTP 158 (178)
Q Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~IlV~TP 158 (178)
+.+++|++|+++-+..+++.++.. ++++..++|+...... .... ...+|+|+|.
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~~R~~~~-~~F~~g~~~vLVaT~ 231 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRKTFEREY-PTIKQKKPDFILATD 231 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSSSCC---------CCCSEEEESS
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecchhHHHHH-hhhcCCCceEEEECC
Confidence 468999999999999999988765 6788888885433322 3333 3479999994
No 176
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=90.50 E-value=0.14 Score=38.03 Aligned_cols=53 Identities=13% Similarity=0.168 Sum_probs=29.5
Q ss_pred cccccCCCCHHHHHHHHhCC--CCCCcHHHHHHHHHHHcCCcEEEEcCCCChHHHHHH
Q psy9277 32 STFDNMGLREDLLRGIYAYG--FEKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 32 ~~f~~~~l~~~i~~~l~~~g--~~~~~~~Q~~~i~~i~~g~~v~v~aptGsGKTl~~l 87 (178)
.+|+++.-.+.+.+.+++.- +..+..+... .+...+++++.||+|+|||...-
T Consensus 3 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~---g~~~~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 3 VSFKDVAGMHEAKLEVREFVDYLKSPERFLQL---GAKVPKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCCC---------CCCCCEEEEESCTTSSHHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHc---CCCCCceEEEECCCCCCHHHHHH
Confidence 56777765666666664320 1111111110 11235789999999999997653
No 177
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=90.47 E-value=0.14 Score=39.10 Aligned_cols=55 Identities=7% Similarity=0.054 Sum_probs=32.7
Q ss_pred cccccccCCCCHHHHHHHHhCCCCCCcHHH-HHHHHHHH-cCCcEEEEcCCCChHHHHHH
Q psy9277 30 VVSTFDNMGLREDLLRGIYAYGFEKPSAIQ-QRSIKPIV-KGRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 30 ~~~~f~~~~l~~~i~~~l~~~g~~~~~~~Q-~~~i~~i~-~g~~v~v~aptGsGKTl~~l 87 (178)
+..+|+++.=.+...+.+.+.= . .+.. .+.+..+. .++.+++.||+|+|||...-
T Consensus 16 ~~~~~~~i~G~~~~~~~l~~~i-~--~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~ 72 (297)
T 3b9p_A 16 AKVEWTDIAGQDVAKQALQEMV-I--LPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLAR 72 (297)
T ss_dssp SCCCGGGSCCCHHHHHHHHHHT-H--HHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHH-H--hhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHH
Confidence 4567888876777777765421 0 1110 00011111 36799999999999997653
No 178
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=90.45 E-value=0.42 Score=34.50 Aligned_cols=39 Identities=10% Similarity=0.171 Sum_probs=26.7
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcCcH
Q psy9277 69 GRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSPTR 110 (178)
Q Consensus 69 g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~Pt~ 110 (178)
|+=.++.||.|+|||...+-- +.+... .+.+++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~-a~r~~~--~g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRR-IRRAKI--AKQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHH-HHHHHH--TTCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHHHH-HHHHHH--CCCEEEEEEecc
Confidence 556788999999999776533 333332 456788888874
No 179
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=90.43 E-value=0.12 Score=36.24 Aligned_cols=21 Identities=19% Similarity=0.241 Sum_probs=17.7
Q ss_pred HcCCcEEEEcCCCChHHHHHH
Q psy9277 67 VKGRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 67 ~~g~~v~v~aptGsGKTl~~l 87 (178)
..++.++++|++|||||...-
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHH
Confidence 356789999999999997654
No 180
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=90.40 E-value=0.18 Score=34.82 Aligned_cols=20 Identities=20% Similarity=0.418 Sum_probs=17.3
Q ss_pred cCCcEEEEcCCCChHHHHHH
Q psy9277 68 KGRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 68 ~g~~v~v~aptGsGKTl~~l 87 (178)
.|..+++.||+|+|||...-
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~ 54 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQ 54 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 68899999999999996643
No 181
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=90.37 E-value=0.74 Score=37.61 Aligned_cols=86 Identities=21% Similarity=0.170 Sum_probs=43.3
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEc--CcHHHHHHHHHHHHHhccCCCceEEEEEcCccHH----HH
Q psy9277 70 RDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLS--PTRELAVQIQKVVLALGDFMNVQCHACIGGTNLS----ED 143 (178)
Q Consensus 70 ~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~--Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~----~~ 143 (178)
.-+++.|++|+|||....--+ ..+.. .+.+++++. +.+.-+.++ +..+....++.+.....+.+.. ..
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA-~~l~~--~G~kVllv~~D~~r~~a~eq---L~~~~~~~gv~~~~~~~~~dp~~i~~~a 171 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLA-YFYKK--RGYKVGLVAADVYRPAAYDQ---LLQLGNQIGVQVYGEPNNQNPIEIAKKG 171 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHH-HHHHH--TTCCEEEEEECCSCHHHHHH---HHHHHHTTTCCEECCTTCSCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH-HHHHH--cCCeEEEEecCccchhHHHH---HHHHHHhcCCceeeccccCCHHHHHHHH
Confidence 468899999999997754322 22222 345666655 334433333 3333344455443332222221 11
Q ss_pred HHHhc-CCCc-EEEeChHHH
Q psy9277 144 LRKLD-YGQH-VVSGTPGRV 161 (178)
Q Consensus 144 ~~~~~-~~~~-IlV~TP~~l 161 (178)
..... .+++ |+|=||+++
T Consensus 172 l~~a~~~~~DvvIIDTaGr~ 191 (433)
T 3kl4_A 172 VDIFVKNKMDIIIVDTAGRH 191 (433)
T ss_dssp HHHTTTTTCSEEEEEECCCS
T ss_pred HHHHHhcCCCEEEEECCCCc
Confidence 22222 3454 567888874
No 182
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=90.37 E-value=0.16 Score=36.67 Aligned_cols=20 Identities=30% Similarity=0.488 Sum_probs=15.7
Q ss_pred cCCcEEEEcCCCChHHHHHH
Q psy9277 68 KGRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 68 ~g~~v~v~aptGsGKTl~~l 87 (178)
.|+-+.++||+|+|||...-
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~ 22 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLK 22 (198)
T ss_dssp --CCEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 47789999999999997653
No 183
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=90.37 E-value=0.34 Score=39.61 Aligned_cols=52 Identities=19% Similarity=0.116 Sum_probs=31.1
Q ss_pred cccccccccCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCChHHHHHH
Q psy9277 28 VEVVSTFDNMGLREDLLRGIYAYGFEKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 28 ~~~~~~f~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~i~~g~~v~v~aptGsGKTl~~l 87 (178)
..+...|+++.-.+...+.+... + ..+-.....++++++.||+|+|||..+-
T Consensus 30 ~~~~~~~~~iiG~~~~~~~l~~~-------~-~~~~~~~~~~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 30 GLAKQAASGLVGQENAREACGVI-------V-ELIKSKKMAGRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp SCBCSEETTEESCHHHHHHHHHH-------H-HHHHTTCCTTCEEEEECCTTSSHHHHHH
T ss_pred cChhhchhhccCHHHHHHHHHHH-------H-HHHHhCCCCCCeEEEECCCcCCHHHHHH
Confidence 44556677776666666555321 0 0000111234789999999999997764
No 184
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=90.35 E-value=0.11 Score=39.35 Aligned_cols=21 Identities=24% Similarity=0.347 Sum_probs=17.9
Q ss_pred HHcCCcEEEEcCCCChHHHHH
Q psy9277 66 IVKGRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 66 i~~g~~v~v~aptGsGKTl~~ 86 (178)
+..|.-+.+.||||||||...
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHH
Confidence 456888999999999999764
No 185
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=90.27 E-value=0.33 Score=44.42 Aligned_cols=40 Identities=25% Similarity=0.281 Sum_probs=31.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcCcHH
Q psy9277 72 VIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSPTRE 111 (178)
Q Consensus 72 v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~Pt~~ 111 (178)
-+|.|..|||||.+.+--+.+.+.....+.++++++|...
T Consensus 4 ~lV~agAGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q~ 43 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQM 43 (1166)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGGG
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCCCcEEEEecCcc
Confidence 3789999999999887777666655444568999999764
No 186
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=90.20 E-value=0.16 Score=39.88 Aligned_cols=20 Identities=40% Similarity=0.645 Sum_probs=17.4
Q ss_pred HHcCCcEEEEcCCCChHHHH
Q psy9277 66 IVKGRDVIAQAQSGTGKTAT 85 (178)
Q Consensus 66 i~~g~~v~v~aptGsGKTl~ 85 (178)
+..|..+.+.||||||||..
T Consensus 168 i~~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHH
T ss_pred ccCCCEEEEECCCCCCHHHH
Confidence 44699999999999999964
No 187
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=90.19 E-value=0.17 Score=35.65 Aligned_cols=19 Identities=26% Similarity=0.212 Sum_probs=16.4
Q ss_pred CCcEEEEcCCCChHHHHHH
Q psy9277 69 GRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 69 g~~v~v~aptGsGKTl~~l 87 (178)
++.++++|++|||||...-
T Consensus 5 ~~~i~l~G~~GsGKst~a~ 23 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGS 23 (185)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 5689999999999997764
No 188
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=90.17 E-value=0.15 Score=36.41 Aligned_cols=21 Identities=29% Similarity=0.308 Sum_probs=17.1
Q ss_pred HHcCCcEEEEcCCCChHHHHH
Q psy9277 66 IVKGRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 66 i~~g~~v~v~aptGsGKTl~~ 86 (178)
+..|.-+.+.||+|||||...
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHH
Confidence 345788999999999999765
No 189
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=90.16 E-value=0.23 Score=35.81 Aligned_cols=36 Identities=17% Similarity=0.073 Sum_probs=24.5
Q ss_pred HHcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEc
Q psy9277 66 IVKGRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLS 107 (178)
Q Consensus 66 i~~g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~ 107 (178)
+..|.-+++.+|+|+|||.....-+. . .+..++++.
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~----~--~~~~v~~i~ 52 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGL----L--SGKKVAYVD 52 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHH----H--HCSEEEEEE
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH----H--cCCcEEEEE
Confidence 33477899999999999977654333 1 234566665
No 190
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=89.99 E-value=0.11 Score=36.82 Aligned_cols=21 Identities=19% Similarity=0.363 Sum_probs=17.5
Q ss_pred HHcCCcEEEEcCCCChHHHHH
Q psy9277 66 IVKGRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 66 i~~g~~v~v~aptGsGKTl~~ 86 (178)
+..|.-+++.||+|||||...
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIA 26 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHH
Confidence 445788999999999999764
No 191
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=89.90 E-value=0.3 Score=39.73 Aligned_cols=29 Identities=17% Similarity=0.441 Sum_probs=20.2
Q ss_pred HHHHHHHHHHc--CCcEEEEcCCCChHHHHH
Q psy9277 58 IQQRSIKPIVK--GRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 58 ~Q~~~i~~i~~--g~~v~v~aptGsGKTl~~ 86 (178)
-+..++..++. |.-+++.||||||||...
T Consensus 154 ~~~~~L~~l~~~~ggii~I~GpnGSGKTTlL 184 (418)
T 1p9r_A 154 HNHDNFRRLIKRPHGIILVTGPTGSGKSTTL 184 (418)
T ss_dssp HHHHHHHHHHTSSSEEEEEECSTTSCHHHHH
T ss_pred HHHHHHHHHHHhcCCeEEEECCCCCCHHHHH
Confidence 34445544443 557899999999999653
No 192
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=89.86 E-value=0.32 Score=35.19 Aligned_cols=23 Identities=30% Similarity=0.257 Sum_probs=18.2
Q ss_pred HHcCCcEEEEcCCCChHHHHHHH
Q psy9277 66 IVKGRDVIAQAQSGTGKTATFSI 88 (178)
Q Consensus 66 i~~g~~v~v~aptGsGKTl~~ll 88 (178)
+..|.-+++.||+|+|||.....
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~ 42 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLH 42 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHH
T ss_pred CcCCCEEEEEcCCCCCHHHHHHH
Confidence 34578899999999999966543
No 193
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=89.84 E-value=0.18 Score=35.13 Aligned_cols=19 Identities=26% Similarity=0.370 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCChHHHHHH
Q psy9277 69 GRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 69 g~~v~v~aptGsGKTl~~l 87 (178)
++-++++|++|||||.+.-
T Consensus 3 ~~~i~l~G~~GsGKST~a~ 21 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVR 21 (178)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 4668999999999997753
No 194
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=89.80 E-value=0.19 Score=36.47 Aligned_cols=19 Identities=26% Similarity=0.413 Sum_probs=16.2
Q ss_pred cCCcEEEEcCCCChHHHHH
Q psy9277 68 KGRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 68 ~g~~v~v~aptGsGKTl~~ 86 (178)
.|+-++++||+|+|||...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 4677999999999999764
No 195
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=89.74 E-value=4.4 Score=29.31 Aligned_cols=35 Identities=17% Similarity=0.148 Sum_probs=27.1
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEE
Q psy9277 69 GRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCL 106 (178)
Q Consensus 69 g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil 106 (178)
.-.+++..++|.|||.+++-..+..+. .+.+++++
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g---~G~rV~~v 62 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVG---HGKNVGVV 62 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHH---TTCCEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEE
Confidence 458999999999999998877776654 45566666
No 196
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=89.74 E-value=0.2 Score=34.72 Aligned_cols=18 Identities=22% Similarity=0.361 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCChHHHHH
Q psy9277 69 GRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 69 g~~v~v~aptGsGKTl~~ 86 (178)
++.+.+.|++|||||...
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 567999999999999764
No 197
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=89.72 E-value=0.76 Score=35.42 Aligned_cols=44 Identities=18% Similarity=0.221 Sum_probs=26.0
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcCcHHHHHHH
Q psy9277 69 GRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSPTRELAVQI 116 (178)
Q Consensus 69 g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~Pt~~L~~q~ 116 (178)
+..+++.||+|+|||...- .+...+... +..++++. ..++..+.
T Consensus 37 ~~~lll~G~~GtGKT~la~-~i~~~~~~~--~~~~~~i~-~~~~~~~~ 80 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQ-AAGNEAKKR--GYRVIYSS-ADDFAQAM 80 (324)
T ss_dssp CSSEEEECSSSSSHHHHHH-HHHHHHHHT--TCCEEEEE-HHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHH-HHHHHHHHC--CCEEEEEE-HHHHHHHH
Confidence 4689999999999997653 333333322 33455554 33344333
No 198
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=89.71 E-value=0.17 Score=36.51 Aligned_cols=21 Identities=19% Similarity=0.317 Sum_probs=17.6
Q ss_pred HHcCCcEEEEcCCCChHHHHH
Q psy9277 66 IVKGRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 66 i~~g~~v~v~aptGsGKTl~~ 86 (178)
...|+-++++||+|||||...
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHH
Confidence 345788999999999999754
No 199
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=89.68 E-value=0.82 Score=35.42 Aligned_cols=40 Identities=23% Similarity=0.069 Sum_probs=27.2
Q ss_pred HHcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcC
Q psy9277 66 IVKGRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSP 108 (178)
Q Consensus 66 i~~g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~P 108 (178)
+..|.-+++.|++|+|||...+--+.+... .+..++|++-
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ia~~~a~---~g~~vl~~sl 104 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALKQAKNMSD---NDDVVNLHSL 104 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHHHHHHHHT---TTCEEEEEES
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEEC
Confidence 444778999999999999766544444332 2356777763
No 200
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=89.68 E-value=0.2 Score=36.23 Aligned_cols=22 Identities=32% Similarity=0.517 Sum_probs=17.3
Q ss_pred HHHcCCcEEEEcCCCChHHHHH
Q psy9277 65 PIVKGRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 65 ~i~~g~~v~v~aptGsGKTl~~ 86 (178)
.+..|+-+.+.||+|+|||...
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHH
Confidence 6777999999999999999765
No 201
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=89.60 E-value=0.59 Score=39.06 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=19.3
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHH
Q psy9277 68 KGRDVIAQAQSGTGKTATFSISILQ 92 (178)
Q Consensus 68 ~g~~v~v~aptGsGKTl~~ll~il~ 92 (178)
.+.+++|.|+||||||.+.-..++.
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~s 190 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMILS 190 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHHH
Confidence 3679999999999999875444433
No 202
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=89.52 E-value=2.7 Score=34.07 Aligned_cols=34 Identities=18% Similarity=0.243 Sum_probs=26.6
Q ss_pred CCcHHHHHHHHHHHc---CCcEEEEcCCCChHHHHHH
Q psy9277 54 KPSAIQQRSIKPIVK---GRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 54 ~~~~~Q~~~i~~i~~---g~~v~v~aptGsGKTl~~l 87 (178)
+|-..-..+|...+. |+.+.+.+|+|+|||....
T Consensus 156 ~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~ 192 (422)
T 3ice_A 156 STEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQ 192 (422)
T ss_dssp CTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHH
T ss_pred CcccccceeeeeeeeecCCcEEEEecCCCCChhHHHH
Confidence 455666677776554 8999999999999997764
No 203
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=89.48 E-value=0.19 Score=34.61 Aligned_cols=17 Identities=18% Similarity=0.337 Sum_probs=14.3
Q ss_pred cEEEEcCCCChHHHHHH
Q psy9277 71 DVIAQAQSGTGKTATFS 87 (178)
Q Consensus 71 ~v~v~aptGsGKTl~~l 87 (178)
-++++|++|||||...-
T Consensus 3 ~I~l~G~~GsGKsT~a~ 19 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAK 19 (179)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57899999999997653
No 204
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=89.41 E-value=0.23 Score=36.39 Aligned_cols=21 Identities=19% Similarity=0.222 Sum_probs=16.9
Q ss_pred HHcCCcEEEEcCCCChHHHHH
Q psy9277 66 IVKGRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 66 i~~g~~v~v~aptGsGKTl~~ 86 (178)
+..|+-+.+.||+|+|||...
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLI 40 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHH
Confidence 346889999999999999764
No 205
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=89.38 E-value=0.21 Score=35.62 Aligned_cols=19 Identities=42% Similarity=0.480 Sum_probs=16.5
Q ss_pred cCCcEEEEcCCCChHHHHH
Q psy9277 68 KGRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 68 ~g~~v~v~aptGsGKTl~~ 86 (178)
.|.-+.+.||+|||||...
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 5778999999999999765
No 206
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=89.28 E-value=0.13 Score=38.96 Aligned_cols=54 Identities=15% Similarity=0.066 Sum_probs=33.4
Q ss_pred cccccccCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHH--cCCcEEEEcCCCChHHHHH
Q psy9277 30 VVSTFDNMGLREDLLRGIYAYGFEKPSAIQQRSIKPIV--KGRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 30 ~~~~f~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~i~--~g~~v~v~aptGsGKTl~~ 86 (178)
+..+|+++.-.+.+.+.++..-.. . -....+..+- -.+.+++.+|+|+|||...
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~--~-~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEF--L-KNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHH--H-HCHHHHHHTTCCCCCEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHH--H-HCHHHHHHcCCCCCCeEEEECCCcChHHHHH
Confidence 567899988777777777543210 0 0112222221 1356999999999999664
No 207
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=89.19 E-value=1.1 Score=43.54 Aligned_cols=41 Identities=20% Similarity=0.150 Sum_probs=30.2
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcCcHHH
Q psy9277 69 GRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSPTREL 112 (178)
Q Consensus 69 g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~Pt~~L 112 (178)
++++++.+|+|+|||......+.... .++.+++++.....+
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ea~---~~G~~v~Fi~~e~~~ 1467 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAAAQ---REGKTCAFIDAEHAL 1467 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHH---TTTCCEEEECTTSCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEEEccccc
Confidence 78999999999999988765544432 256688888766444
No 208
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=89.17 E-value=0.32 Score=37.56 Aligned_cols=19 Identities=32% Similarity=0.441 Sum_probs=16.6
Q ss_pred cCCcEEEEcCCCChHHHHH
Q psy9277 68 KGRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 68 ~g~~v~v~aptGsGKTl~~ 86 (178)
.+.++++.|++|+|||..+
T Consensus 24 ~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp TTSCEEEESCTTSCHHHHH
T ss_pred CCCcEEEECCCCchHHHHH
Confidence 4679999999999999765
No 209
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=89.01 E-value=0.65 Score=36.12 Aligned_cols=42 Identities=10% Similarity=-0.051 Sum_probs=26.8
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhc---CCCceEEEEcCcH
Q psy9277 69 GRDVIAQAQSGTGKTATFSISILQSLDTQ---LRETQVLCLSPTR 110 (178)
Q Consensus 69 g~~v~v~aptGsGKTl~~ll~il~~l~~~---~~~~~~lil~Pt~ 110 (178)
|.-+++.||+|+|||...+-.+.+..... ..+..++|+.-..
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 57899999999999977655444322110 0144777776543
No 210
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=88.96 E-value=0.19 Score=35.26 Aligned_cols=20 Identities=25% Similarity=0.243 Sum_probs=17.1
Q ss_pred cCCcEEEEcCCCChHHHHHH
Q psy9277 68 KGRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 68 ~g~~v~v~aptGsGKTl~~l 87 (178)
.|.-+.++||+|||||..+-
T Consensus 8 ~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 46778999999999997765
No 211
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=88.86 E-value=0.19 Score=38.58 Aligned_cols=19 Identities=16% Similarity=0.017 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCChHHHHHH
Q psy9277 69 GRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 69 g~~v~v~aptGsGKTl~~l 87 (178)
.+.+++.||+|+|||...-
T Consensus 36 p~~lLl~GppGtGKT~la~ 54 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCE 54 (293)
T ss_dssp CSEEEEEECTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4679999999999997653
No 212
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=88.62 E-value=0.26 Score=34.86 Aligned_cols=20 Identities=35% Similarity=0.591 Sum_probs=17.0
Q ss_pred cCCcEEEEcCCCChHHHHHH
Q psy9277 68 KGRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 68 ~g~~v~v~aptGsGKTl~~l 87 (178)
.+..++++|++|||||.+.-
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~ 28 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAE 28 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46789999999999997753
No 213
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=88.53 E-value=0.26 Score=34.63 Aligned_cols=18 Identities=22% Similarity=0.396 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCChHHHHH
Q psy9277 69 GRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 69 g~~v~v~aptGsGKTl~~ 86 (178)
+..+++.|++|||||...
T Consensus 3 ~~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 567999999999999764
No 214
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=88.46 E-value=0.83 Score=33.62 Aligned_cols=50 Identities=14% Similarity=0.169 Sum_probs=31.1
Q ss_pred HHHHHHHhCCCCCCcHHHHHHHHHHHcC----CcEEEEcCCCChHHHHHHHHHHHHh
Q psy9277 42 DLLRGIYAYGFEKPSAIQQRSIKPIVKG----RDVIAQAQSGTGKTATFSISILQSL 94 (178)
Q Consensus 42 ~i~~~l~~~g~~~~~~~Q~~~i~~i~~g----~~v~v~aptGsGKTl~~ll~il~~l 94 (178)
.|.+-|+=.|+ .+... ...+..++++ ..+++.||+|+|||..+ ..++..+
T Consensus 29 ~I~~~l~yq~~-~~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a-~ala~~l 82 (212)
T 1tue_A 29 PIVQFLRYQQI-EFITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG-MSFIHFI 82 (212)
T ss_dssp HHHHHHHHTTC-CHHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH-HHHHHHH
T ss_pred HHHHHHHHcCc-CHHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH-HHHHHHh
Confidence 56666654454 34444 4455555554 36999999999999765 3444443
No 215
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=88.42 E-value=1.6 Score=37.53 Aligned_cols=56 Identities=13% Similarity=0.197 Sum_probs=43.9
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccHHHHHHHhc----CCCcEEEeCh
Q psy9277 99 RETQVLCLSPTRELAVQIQKVVLALGDFMNVQCHACIGGTNLSEDLRKLD----YGQHVVSGTP 158 (178)
Q Consensus 99 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~IlV~TP 158 (178)
.+.++||.++|+..+..+.+.+... ++.+..++|+.+..++...+. ...+|+|||-
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~ 503 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEI----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN 503 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhc----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc
Confidence 4569999999999999999988775 778888888887766655432 3478999983
No 216
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=88.42 E-value=0.26 Score=38.95 Aligned_cols=53 Identities=11% Similarity=0.137 Sum_probs=31.0
Q ss_pred ccccccccCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHc-----CCcEEEEcCCCChHHHHHH
Q psy9277 29 EVVSTFDNMGLREDLLRGIYAYGFEKPSAIQQRSIKPIVK-----GRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 29 ~~~~~f~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~i~~-----g~~v~v~aptGsGKTl~~l 87 (178)
.+..+|+++.-.+.+.+.|.+. +. ++. -.|.+.. .+++++.||+|+|||...-
T Consensus 45 ~~~~~~~di~G~~~~~~~l~~~-v~--~~~---~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 45 KPNVKWEDVAGLEGAKEALKEA-VI--LPV---KFPHLFKGNRKPTSGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp --CCCGGGSCCGGGHHHHHHHH-TH--HHH---HCGGGGCSSCCCCCCEEEECSTTSCHHHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHH-HH--HHH---hCHHHHhcCCCCCceEEEECCCCCcHHHHHH
Confidence 3456788887666666666432 10 111 1122222 4689999999999997754
No 217
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=88.38 E-value=0.28 Score=34.73 Aligned_cols=17 Identities=35% Similarity=0.663 Sum_probs=14.3
Q ss_pred CcEEEEcCCCChHHHHH
Q psy9277 70 RDVIAQAQSGTGKTATF 86 (178)
Q Consensus 70 ~~v~v~aptGsGKTl~~ 86 (178)
+-+.+.||+|+|||...
T Consensus 2 ~ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEESSSSSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45789999999999764
No 218
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=88.34 E-value=0.25 Score=38.70 Aligned_cols=17 Identities=24% Similarity=0.290 Sum_probs=14.2
Q ss_pred cEEEEcCCCChHHHHHH
Q psy9277 71 DVIAQAQSGTGKTATFS 87 (178)
Q Consensus 71 ~v~v~aptGsGKTl~~l 87 (178)
-++++||||||||....
T Consensus 12 ~i~i~GptgsGKt~la~ 28 (316)
T 3foz_A 12 AIFLMGPTASGKTALAI 28 (316)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCccCHHHHHH
Confidence 47899999999997654
No 219
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=88.32 E-value=0.48 Score=34.00 Aligned_cols=17 Identities=24% Similarity=0.341 Sum_probs=14.7
Q ss_pred CcEEEEcCCCChHHHHH
Q psy9277 70 RDVIAQAQSGTGKTATF 86 (178)
Q Consensus 70 ~~v~v~aptGsGKTl~~ 86 (178)
..+++.||+|+|||...
T Consensus 46 ~~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIA 62 (250)
T ss_dssp SEEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 36899999999999764
No 220
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=88.31 E-value=4.9 Score=34.48 Aligned_cols=55 Identities=9% Similarity=0.059 Sum_probs=43.3
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccHHHHHHHh---c-CCCcEEEeC
Q psy9277 99 RETQVLCLSPTRELAVQIQKVVLALGDFMNVQCHACIGGTNLSEDLRKL---D-YGQHVVSGT 157 (178)
Q Consensus 99 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~-~~~~IlV~T 157 (178)
.+.++||.++|+..+..+.+.+... ++.+..++|+.+..++...+ . ...+|+|||
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT 496 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEH----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGI 496 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEES
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhc----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEcc
Confidence 4569999999999999999988765 67888888888776665543 2 346899988
No 221
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=88.25 E-value=0.25 Score=38.75 Aligned_cols=18 Identities=28% Similarity=0.222 Sum_probs=14.6
Q ss_pred CcEEEEcCCCChHHHHHH
Q psy9277 70 RDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 70 ~~v~v~aptGsGKTl~~l 87 (178)
+-++|.||||||||....
T Consensus 4 ~~i~i~GptgsGKt~la~ 21 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSV 21 (322)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred cEEEEECCCcCCHHHHHH
Confidence 347899999999997654
No 222
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=88.23 E-value=0.26 Score=39.02 Aligned_cols=19 Identities=21% Similarity=0.288 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCChHHHHHH
Q psy9277 69 GRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 69 g~~v~v~aptGsGKTl~~l 87 (178)
++-+++.||||+|||....
T Consensus 40 ~~lIvI~GPTgsGKTtLa~ 58 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSI 58 (339)
T ss_dssp CEEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3469999999999997654
No 223
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=88.21 E-value=1.2 Score=32.53 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=19.9
Q ss_pred HHHcCCcEEEEcCCCChHHHHHHHH
Q psy9277 65 PIVKGRDVIAQAQSGTGKTATFSIS 89 (178)
Q Consensus 65 ~i~~g~~v~v~aptGsGKTl~~ll~ 89 (178)
.+..|.-+.+.||+|+|||.....-
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i 50 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQF 50 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHH
Confidence 3456889999999999999776443
No 224
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=88.17 E-value=0.25 Score=37.14 Aligned_cols=17 Identities=18% Similarity=0.059 Sum_probs=14.2
Q ss_pred cEEEEcCCCChHHHHHH
Q psy9277 71 DVIAQAQSGTGKTATFS 87 (178)
Q Consensus 71 ~v~v~aptGsGKTl~~l 87 (178)
-++++||+|||||....
T Consensus 3 li~I~G~~GSGKSTla~ 19 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAI 19 (253)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHH
Confidence 47899999999997654
No 225
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=88.14 E-value=0.23 Score=36.43 Aligned_cols=19 Identities=37% Similarity=0.518 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCChHHHHHH
Q psy9277 69 GRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 69 g~~v~v~aptGsGKTl~~l 87 (178)
|+-+++.+|||+|||...+
T Consensus 34 g~~ilI~GpsGsGKStLA~ 52 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETAL 52 (205)
T ss_dssp TEEEEEECCCTTTTHHHHH
T ss_pred CEEEEEECCCCCCHHHHHH
Confidence 6779999999999985543
No 226
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=88.05 E-value=0.3 Score=35.04 Aligned_cols=20 Identities=35% Similarity=0.469 Sum_probs=17.0
Q ss_pred cCCcEEEEcCCCChHHHHHH
Q psy9277 68 KGRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 68 ~g~~v~v~aptGsGKTl~~l 87 (178)
.|.-+++.||+|||||...-
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~ 47 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAH 47 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 47889999999999997653
No 227
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=88.03 E-value=0.3 Score=35.50 Aligned_cols=21 Identities=14% Similarity=0.272 Sum_probs=17.4
Q ss_pred HcCCcEEEEcCCCChHHHHHH
Q psy9277 67 VKGRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 67 ~~g~~v~v~aptGsGKTl~~l 87 (178)
..|+-++++||+|+|||...-
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~ 37 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKN 37 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHH
T ss_pred CCCCEEEEECcCCCCHHHHHH
Confidence 367889999999999997643
No 228
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=87.99 E-value=0.91 Score=34.97 Aligned_cols=19 Identities=26% Similarity=0.538 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCChHHHHHH
Q psy9277 69 GRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 69 g~~v~v~aptGsGKTl~~l 87 (178)
++-+++.+++|+|||....
T Consensus 105 g~vi~lvG~~GsGKTTl~~ 123 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLA 123 (296)
T ss_dssp SSEEEEEESTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 5678999999999997654
No 229
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=87.98 E-value=0.27 Score=34.14 Aligned_cols=16 Identities=19% Similarity=0.283 Sum_probs=13.9
Q ss_pred cEEEEcCCCChHHHHH
Q psy9277 71 DVIAQAQSGTGKTATF 86 (178)
Q Consensus 71 ~v~v~aptGsGKTl~~ 86 (178)
-++++|++|||||...
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 4789999999999765
No 230
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=87.93 E-value=0.25 Score=34.46 Aligned_cols=19 Identities=32% Similarity=0.319 Sum_probs=16.1
Q ss_pred CCcEEEEcCCCChHHHHHH
Q psy9277 69 GRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 69 g~~v~v~aptGsGKTl~~l 87 (178)
|..++++|++|||||...-
T Consensus 8 g~~i~l~G~~GsGKSTl~~ 26 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVAS 26 (175)
T ss_dssp SEEEEEECSTTSCHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 5679999999999997653
No 231
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=87.74 E-value=0.3 Score=38.64 Aligned_cols=19 Identities=21% Similarity=0.387 Sum_probs=16.4
Q ss_pred CCcEEEEcCCCChHHHHHH
Q psy9277 69 GRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 69 g~~v~v~aptGsGKTl~~l 87 (178)
..++++.||+|+|||...-
T Consensus 72 ~~~ill~Gp~GtGKT~la~ 90 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQ 90 (376)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHH
Confidence 5689999999999997653
No 232
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=87.72 E-value=0.28 Score=33.75 Aligned_cols=17 Identities=12% Similarity=0.018 Sum_probs=14.4
Q ss_pred cEEEEcCCCChHHHHHH
Q psy9277 71 DVIAQAQSGTGKTATFS 87 (178)
Q Consensus 71 ~v~v~aptGsGKTl~~l 87 (178)
.+++.|++|||||...-
T Consensus 3 ~i~l~G~~GsGKsT~~~ 19 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAA 19 (173)
T ss_dssp EEEEECSSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57899999999997653
No 233
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=87.67 E-value=0.84 Score=37.16 Aligned_cols=54 Identities=11% Similarity=0.028 Sum_probs=40.0
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccHHHHHHHhc-CCCcEEEeCh
Q psy9277 100 ETQVLCLSPTRELAVQIQKVVLALGDFMNVQCHACIGGTNLSEDLRKLD-YGQHVVSGTP 158 (178)
Q Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~IlV~TP 158 (178)
+.++||.+|++.-+.++++.+... ++.+..+++..... ...... ...+|||+|-
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~----g~~~~~lh~~~~~~-~~~~f~~g~~~vLVaT~ 242 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTFDT-EYPKTKLTDWDFVVTTD 242 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECTTTHHH-HGGGGGSSCCSEEEECG
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHc----CCeEEECCHHHHHH-HHHhhccCCceEEEECC
Confidence 458999999999999999888654 67888888776533 223333 3479999994
No 234
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=87.61 E-value=0.8 Score=39.52 Aligned_cols=55 Identities=7% Similarity=0.030 Sum_probs=40.3
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccHHHHHHHhcC-CCcEEEeCh
Q psy9277 99 RETQVLCLSPTRELAVQIQKVVLALGDFMNVQCHACIGGTNLSEDLRKLDY-GQHVVSGTP 158 (178)
Q Consensus 99 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~IlV~TP 158 (178)
.+.++||++|+++-+..+++.++.. ++++..++|.. .........+ ..+|||+|-
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~----g~~v~~lHg~e-R~~v~~~F~~g~~~VLVaTd 464 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRA----GKRVIQLNRKS-YDTEYPKCKNGDWDFVITTD 464 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECSSS-HHHHGGGGGTCCCSEEEECG
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhC----CCeEEEeChHH-HHHHHHHHHCCCceEEEECc
Confidence 3468999999999999988888654 78888888853 3333333333 479999993
No 235
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=87.58 E-value=0.32 Score=35.79 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=17.3
Q ss_pred HHcCCcEEEEcCCCChHHHHHH
Q psy9277 66 IVKGRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 66 i~~g~~v~v~aptGsGKTl~~l 87 (178)
...|+-+++.||+|+|||...-
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk 34 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQ 34 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHH
Confidence 4568889999999999997653
No 236
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=87.49 E-value=0.54 Score=34.28 Aligned_cols=26 Identities=23% Similarity=0.111 Sum_probs=20.0
Q ss_pred HHcCCcEEEEcCCCChHHHHHHHHHH
Q psy9277 66 IVKGRDVIAQAQSGTGKTATFSISIL 91 (178)
Q Consensus 66 i~~g~~v~v~aptGsGKTl~~ll~il 91 (178)
+..|.-+.+.+|+|+|||.....-+.
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHH
Confidence 33578899999999999987654443
No 237
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=87.44 E-value=3.2 Score=36.33 Aligned_cols=60 Identities=13% Similarity=0.122 Sum_probs=46.9
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHhc-------cCCCceEEEEEcCccHHHHHHHhcC---------CCcEEEeCh
Q psy9277 99 RETQVLCLSPTRELAVQIQKVVLALG-------DFMNVQCHACIGGTNLSEDLRKLDY---------GQHVVSGTP 158 (178)
Q Consensus 99 ~~~~~lil~Pt~~L~~q~~~~~~~~~-------~~~~~~~~~~~g~~~~~~~~~~~~~---------~~~IlV~TP 158 (178)
.+.++||.+|++.-+..+++.+.... ...++.+..++|+.+..++...+.. ...|||+|.
T Consensus 302 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~ 377 (773)
T 2xau_A 302 EAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTN 377 (773)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECT
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCc
Confidence 45699999999999999999887532 2347889999999998877665532 348999994
No 238
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=87.34 E-value=0.36 Score=36.78 Aligned_cols=18 Identities=22% Similarity=0.292 Sum_probs=15.5
Q ss_pred CcEEEEcCCCChHHHHHH
Q psy9277 70 RDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 70 ~~v~v~aptGsGKTl~~l 87 (178)
..+++.||+|+|||..+-
T Consensus 48 ~~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAK 65 (311)
T ss_dssp EEEEEESCSSSSHHHHHH
T ss_pred eEEEEECCCCcCHHHHHH
Confidence 479999999999997754
No 239
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=87.31 E-value=0.23 Score=39.71 Aligned_cols=21 Identities=24% Similarity=0.347 Sum_probs=17.4
Q ss_pred HHcCCcEEEEcCCCChHHHHH
Q psy9277 66 IVKGRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 66 i~~g~~v~v~aptGsGKTl~~ 86 (178)
+..|..+++.||||||||...
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHH
Confidence 345788999999999999764
No 240
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=87.24 E-value=0.15 Score=38.23 Aligned_cols=19 Identities=32% Similarity=0.389 Sum_probs=16.3
Q ss_pred CCcEEEEcCCCChHHHHHH
Q psy9277 69 GRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 69 g~~v~v~aptGsGKTl~~l 87 (178)
.+++++.||+|+|||...-
T Consensus 44 ~~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 5679999999999997754
No 241
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=87.22 E-value=0.31 Score=38.46 Aligned_cols=19 Identities=26% Similarity=0.326 Sum_probs=16.6
Q ss_pred CCcEEEEcCCCChHHHHHH
Q psy9277 69 GRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 69 g~~v~v~aptGsGKTl~~l 87 (178)
.+++++.||+|+|||...-
T Consensus 117 ~~~vLl~GppGtGKT~la~ 135 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGK 135 (357)
T ss_dssp CSEEEEESSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5789999999999997754
No 242
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=87.07 E-value=0.28 Score=39.04 Aligned_cols=19 Identities=26% Similarity=0.457 Sum_probs=15.9
Q ss_pred cCCcEEEEcCCCChHHHHH
Q psy9277 68 KGRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 68 ~g~~v~v~aptGsGKTl~~ 86 (178)
.+..+++.||||||||...
T Consensus 122 ~~g~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTL 140 (356)
T ss_dssp SSEEEEEECSTTSCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4568999999999999664
No 243
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=87.02 E-value=0.92 Score=36.94 Aligned_cols=48 Identities=15% Similarity=0.174 Sum_probs=28.3
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcCcHHHHHHHHH
Q psy9277 69 GRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSPTRELAVQIQK 118 (178)
Q Consensus 69 g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~Pt~~L~~q~~~ 118 (178)
...+++.||+|+|||...- .+...+.....+..++++.. ..+..+...
T Consensus 130 ~~~lll~Gp~G~GKTtLa~-aia~~l~~~~~~~~v~~v~~-~~~~~~~~~ 177 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQ-SIGNYVVQNEPDLRVMYITS-EKFLNDLVD 177 (440)
T ss_dssp SCCEEEECSSSSSHHHHHH-HHHHHHHHHCCSSCEEEEEH-HHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHHHhCCCCeEEEeeH-HHHHHHHHH
Confidence 3689999999999997653 33344433323445555543 334444443
No 244
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=87.00 E-value=0.32 Score=38.77 Aligned_cols=19 Identities=26% Similarity=0.387 Sum_probs=16.6
Q ss_pred CCcEEEEcCCCChHHHHHH
Q psy9277 69 GRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 69 g~~v~v~aptGsGKTl~~l 87 (178)
.+++++.||+|+|||...-
T Consensus 148 ~~~vLL~GppGtGKT~la~ 166 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAK 166 (389)
T ss_dssp CSEEEEESSTTSCHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5799999999999997654
No 245
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=86.96 E-value=0.75 Score=37.59 Aligned_cols=40 Identities=23% Similarity=0.071 Sum_probs=28.0
Q ss_pred HHcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcC
Q psy9277 66 IVKGRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSP 108 (178)
Q Consensus 66 i~~g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~P 108 (178)
+..|.-+++.|++|+|||...+--+.+.... +..++|++-
T Consensus 194 l~~G~liiIaG~pG~GKTtlal~ia~~~a~~---g~~vl~fSl 233 (444)
T 3bgw_A 194 YKRRNFVLIAARPSMGKTAFALKQAKNMSDN---DDVVNLHSL 233 (444)
T ss_dssp BCSSCEEEEEECSSSSHHHHHHHHHHHHHHT---TCEEEEECS
T ss_pred CCCCcEEEEEeCCCCChHHHHHHHHHHHHHc---CCEEEEEEC
Confidence 3446789999999999997766555444332 457777763
No 246
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=86.96 E-value=2.2 Score=34.94 Aligned_cols=78 Identities=18% Similarity=0.123 Sum_probs=43.2
Q ss_pred ChHHHHHHHHHHHHhhhcCCCceEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEc--------CccHHHHHHHh---c
Q psy9277 80 TGKTATFSISILQSLDTQLRETQVLCLSPTRELAVQIQKVVLALGDFMNVQCHACIG--------GTNLSEDLRKL---D 148 (178)
Q Consensus 80 sGKTl~~ll~il~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g--------~~~~~~~~~~~---~ 148 (178)
++|... +.-++..........++||.++++..+..+++.+.......++++..++| +.+..++...+ .
T Consensus 370 ~~k~~~-l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~ 448 (555)
T 3tbk_A 370 NPKLRD-LYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFR 448 (555)
T ss_dssp CHHHHH-HHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC-----------------------
T ss_pred CHHHHH-HHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHh
Confidence 455433 33444444333455799999999999999999998765333344444443 55554443333 2
Q ss_pred C--CCcEEEeCh
Q psy9277 149 Y--GQHVVSGTP 158 (178)
Q Consensus 149 ~--~~~IlV~TP 158 (178)
+ ..+|+|+|-
T Consensus 449 ~~g~~~vLvaT~ 460 (555)
T 3tbk_A 449 ASGDNNILIATS 460 (555)
T ss_dssp ---CCSEEEECC
T ss_pred cCCCeeEEEEcc
Confidence 3 368999994
No 247
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=86.94 E-value=1.7 Score=34.29 Aligned_cols=40 Identities=30% Similarity=0.352 Sum_probs=27.5
Q ss_pred HHcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcC
Q psy9277 66 IVKGRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSP 108 (178)
Q Consensus 66 i~~g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~P 108 (178)
+..|.-+++.|++|+|||...+-.+.+... .+..++|++.
T Consensus 43 l~~G~LiiIaG~pG~GKTt~al~ia~~~a~---~g~~Vl~fSl 82 (338)
T 4a1f_A 43 FNKGSLVIIGARPSMGKTSLMMNMVLSALN---DDRGVAVFSL 82 (338)
T ss_dssp BCTTCEEEEEECTTSCHHHHHHHHHHHHHH---TTCEEEEEES
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEeC
Confidence 444678999999999999776554444333 4457777763
No 248
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=86.91 E-value=0.31 Score=38.14 Aligned_cols=19 Identities=32% Similarity=0.389 Sum_probs=16.4
Q ss_pred CCcEEEEcCCCChHHHHHH
Q psy9277 69 GRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 69 g~~v~v~aptGsGKTl~~l 87 (178)
+.++++.||+|+|||...-
T Consensus 44 ~~~vll~G~~G~GKT~l~~ 62 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVAR 62 (387)
T ss_dssp CCCEEECBCTTSSHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 5789999999999997653
No 249
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=86.90 E-value=0.25 Score=34.72 Aligned_cols=20 Identities=35% Similarity=0.446 Sum_probs=16.5
Q ss_pred cCCcEEEEcCCCChHHHHHH
Q psy9277 68 KGRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 68 ~g~~v~v~aptGsGKTl~~l 87 (178)
.|..+++.|++|||||...-
T Consensus 3 ~g~~I~l~G~~GsGKST~~~ 22 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQAS 22 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 45679999999999997653
No 250
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=86.88 E-value=1.2 Score=34.82 Aligned_cols=18 Identities=28% Similarity=0.180 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCChHHHHH
Q psy9277 69 GRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 69 g~~v~v~aptGsGKTl~~ 86 (178)
...+++.||+|+|||...
T Consensus 45 ~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 457999999999999765
No 251
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=86.85 E-value=0.91 Score=35.86 Aligned_cols=37 Identities=14% Similarity=0.161 Sum_probs=24.8
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEc
Q psy9277 68 KGRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLS 107 (178)
Q Consensus 68 ~g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~ 107 (178)
.|.-+++.+|+|+|||...+..+..... .+..++|+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~---~g~~vlyi~ 96 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQA---AGGIAAFID 96 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh---CCCeEEEEE
Confidence 4678999999999999876554443322 234555554
No 252
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=86.81 E-value=1.7 Score=39.95 Aligned_cols=54 Identities=22% Similarity=0.255 Sum_probs=41.4
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhhc---------CCCceEEEEcCcHHHHHHHHHHHHHh
Q psy9277 70 RDVIAQAQSGTGKTATFSISILQSLDTQ---------LRETQVLCLSPTRELAVQIQKVVLAL 123 (178)
Q Consensus 70 ~~v~v~aptGsGKTl~~ll~il~~l~~~---------~~~~~~lil~Pt~~L~~q~~~~~~~~ 123 (178)
.+.+|.|+-|||||.+..-=++..+... ....+.|+|+=|++=|.++.++++..
T Consensus 17 g~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~ 79 (1180)
T 1w36_B 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 (1180)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHH
Confidence 3459999999999988777777766532 12347999999999999888887544
No 253
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=86.68 E-value=0.82 Score=34.76 Aligned_cols=40 Identities=23% Similarity=0.199 Sum_probs=25.3
Q ss_pred HHcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEc
Q psy9277 66 IVKGRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLS 107 (178)
Q Consensus 66 i~~g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~ 107 (178)
+..|.-+++.||+|+|||.....-+.. +... .+..++++.
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ia~~-~~~~-~G~~v~~~~ 71 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQQALQ-WGTA-MGKKVGLAM 71 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHHHHHH-HHHT-SCCCEEEEE
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHH-HHHH-cCCeEEEEe
Confidence 445889999999999999765443322 2222 233566654
No 254
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=86.55 E-value=0.91 Score=41.08 Aligned_cols=32 Identities=9% Similarity=-0.000 Sum_probs=24.4
Q ss_pred ceEEEEEcCccHHHHHHHhcCCCcEEEeChHH
Q psy9277 129 VQCHACIGGTNLSEDLRKLDYGQHVVSGTPGR 160 (178)
Q Consensus 129 ~~~~~~~g~~~~~~~~~~~~~~~~IlV~TP~~ 160 (178)
-++.++.++.....+...+..++.|||||=.+
T Consensus 236 ~~~LlvlDd~~~~~~~~~~~~~~~ilvTtR~~ 267 (1249)
T 3sfz_A 236 PRSLLILDDVWDPWVLKAFDNQCQILLTTRDK 267 (1249)
T ss_dssp CSCEEEEESCCCHHHHTTTCSSCEEEEEESST
T ss_pred CCEEEEEecCCCHHHHHhhcCCCEEEEEcCCH
Confidence 37788888887777777777789999999533
No 255
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=86.39 E-value=0.58 Score=36.23 Aligned_cols=18 Identities=33% Similarity=0.455 Sum_probs=15.3
Q ss_pred CcEEEEcCCCChHHHHHH
Q psy9277 70 RDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 70 ~~v~v~aptGsGKTl~~l 87 (178)
.++++.||+|+|||...-
T Consensus 59 ~~~ll~G~~G~GKT~la~ 76 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTIL 76 (353)
T ss_dssp CCEEEECSTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 469999999999997653
No 256
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=86.35 E-value=1.1 Score=35.64 Aligned_cols=38 Identities=18% Similarity=0.127 Sum_probs=26.0
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcC
Q psy9277 68 KGRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSP 108 (178)
Q Consensus 68 ~g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~P 108 (178)
.|.-+++.+++|+|||...+-.+.+... .+..++|+..
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~---~g~~vlyid~ 99 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDA 99 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEEES
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEeC
Confidence 4678999999999999877654443322 2345666664
No 257
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=86.31 E-value=1.2 Score=37.65 Aligned_cols=26 Identities=19% Similarity=0.372 Sum_probs=20.0
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHh
Q psy9277 69 GRDVIAQAQSGTGKTATFSISILQSL 94 (178)
Q Consensus 69 g~~v~v~aptGsGKTl~~ll~il~~l 94 (178)
..+++|.|.||||||.+.-..++..+
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl 239 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSIL 239 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999987655555444
No 258
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=86.19 E-value=0.28 Score=37.65 Aligned_cols=19 Identities=21% Similarity=0.218 Sum_probs=16.3
Q ss_pred CCcEEEEcCCCChHHHHHH
Q psy9277 69 GRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 69 g~~v~v~aptGsGKTl~~l 87 (178)
..++++.||+|+|||...-
T Consensus 38 ~~~vll~G~~GtGKT~la~ 56 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAH 56 (324)
T ss_dssp CCCCEEECCTTCCCHHHHH
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 4789999999999997653
No 259
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=86.14 E-value=0.65 Score=39.70 Aligned_cols=59 Identities=15% Similarity=0.170 Sum_probs=40.6
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHh--ccCCCceEEEEEcC--------ccHHHHHHHhc---C-CCcEEEeCh
Q psy9277 100 ETQVLCLSPTRELAVQIQKVVLAL--GDFMNVQCHACIGG--------TNLSEDLRKLD---Y-GQHVVSGTP 158 (178)
Q Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~--~~~~~~~~~~~~g~--------~~~~~~~~~~~---~-~~~IlV~TP 158 (178)
+.++||.++++..+..+++.+... ....|+++..++|+ .+..++...+. + ..+|||+|-
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~ 472 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATT 472 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEEC
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEcc
Confidence 579999999999999999988754 22337888888888 77766655443 2 468999983
No 260
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=86.09 E-value=0.36 Score=34.55 Aligned_cols=20 Identities=30% Similarity=0.370 Sum_probs=17.0
Q ss_pred HcCCcEEEEcCCCChHHHHH
Q psy9277 67 VKGRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 67 ~~g~~v~v~aptGsGKTl~~ 86 (178)
..|.-+.+.||+|||||...
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 34788999999999999765
No 261
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=86.03 E-value=0.69 Score=36.30 Aligned_cols=23 Identities=35% Similarity=0.618 Sum_probs=17.8
Q ss_pred HHHHcCCc--EEEEcCCCChHHHHH
Q psy9277 64 KPIVKGRD--VIAQAQSGTGKTATF 86 (178)
Q Consensus 64 ~~i~~g~~--v~v~aptGsGKTl~~ 86 (178)
..++.|.| ++..|+||||||...
T Consensus 71 ~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 71 KDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhCCCeEEEEEECCCCCCCceEe
Confidence 44556765 788999999999775
No 262
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=85.89 E-value=0.63 Score=33.74 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=16.5
Q ss_pred cEEEEcCCCChHHHHHHHHHHH
Q psy9277 71 DVIAQAQSGTGKTATFSISILQ 92 (178)
Q Consensus 71 ~v~v~aptGsGKTl~~ll~il~ 92 (178)
-.+++|++|||||...+--++.
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 5789999999999876443333
No 263
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=85.89 E-value=1.4 Score=38.06 Aligned_cols=61 Identities=18% Similarity=0.260 Sum_probs=44.9
Q ss_pred CCcHHHHHHHHHHHc--CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcCcHHHHHHHHHHH
Q psy9277 54 KPSAIQQRSIKPIVK--GRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSPTRELAVQIQKVV 120 (178)
Q Consensus 54 ~~~~~Q~~~i~~i~~--g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~Pt~~L~~q~~~~~ 120 (178)
.+|.-|.+++..+.. ..-.++.|+-|.|||.+.-+.+-. +. ..+++.+|+.+-+..+.+..
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~-~~-----~~~~vtAP~~~a~~~l~~~~ 237 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISR-IA-----GRAIVTAPAKASTDVLAQFA 237 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHH-SS-----SCEEEECSSCCSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHH-HH-----hCcEEECCCHHHHHHHHHHh
Confidence 679999999988877 345799999999999554443332 22 24689999988887666654
No 264
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=85.83 E-value=0.57 Score=35.26 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=18.1
Q ss_pred HcCCcEEEEcCCCChHHHHHH
Q psy9277 67 VKGRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 67 ~~g~~v~v~aptGsGKTl~~l 87 (178)
+.|+.+++.|++|||||...-
T Consensus 46 l~g~~i~l~G~~GsGKSTl~~ 66 (250)
T 3nwj_A 46 LNGRSMYLVGMMGSGKTTVGK 66 (250)
T ss_dssp HTTCCEEEECSTTSCHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 349999999999999997753
No 265
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=85.80 E-value=0.58 Score=39.76 Aligned_cols=16 Identities=19% Similarity=0.437 Sum_probs=14.6
Q ss_pred cEEEEcCCCChHHHHH
Q psy9277 71 DVIAQAQSGTGKTATF 86 (178)
Q Consensus 71 ~v~v~aptGsGKTl~~ 86 (178)
++++.||+|+|||..+
T Consensus 329 ~vLL~GppGtGKT~LA 344 (595)
T 3f9v_A 329 HILIIGDPGTAKSQML 344 (595)
T ss_dssp CEEEEESSCCTHHHHH
T ss_pred ceEEECCCchHHHHHH
Confidence 8999999999999764
No 266
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=85.78 E-value=6.8 Score=29.84 Aligned_cols=71 Identities=15% Similarity=0.147 Sum_probs=37.4
Q ss_pred cccccCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHcC---CcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcC
Q psy9277 32 STFDNMGLREDLLRGIYAYGFEKPSAIQQRSIKPIVKG---RDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSP 108 (178)
Q Consensus 32 ~~f~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~i~~g---~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~P 108 (178)
.+|+++--++.+.+.+.+ .+..+ .-+++.+|+|+|||...-. +...+ +...+.+.+
T Consensus 23 ~~~~~ivg~~~~~~~l~~---------------~l~~~~~~~~~L~~G~~G~GKT~la~~-la~~l-----~~~~~~i~~ 81 (324)
T 3u61_B 23 STIDECILPAFDKETFKS---------------ITSKGKIPHIILHSPSPGTGKTTVAKA-LCHDV-----NADMMFVNG 81 (324)
T ss_dssp CSTTTSCCCHHHHHHHHH---------------HHHTTCCCSEEEECSSTTSSHHHHHHH-HHHHT-----TEEEEEEET
T ss_pred CCHHHHhCcHHHHHHHHH---------------HHHcCCCCeEEEeeCcCCCCHHHHHHH-HHHHh-----CCCEEEEcc
Confidence 467777666666655532 11122 2456777799999977543 22322 234555554
Q ss_pred cHHHHHHHHHHHHHh
Q psy9277 109 TRELAVQIQKVVLAL 123 (178)
Q Consensus 109 t~~L~~q~~~~~~~~ 123 (178)
...-...+.+.+..+
T Consensus 82 ~~~~~~~i~~~~~~~ 96 (324)
T 3u61_B 82 SDCKIDFVRGPLTNF 96 (324)
T ss_dssp TTCCHHHHHTHHHHH
T ss_pred cccCHHHHHHHHHHH
Confidence 433233343334333
No 267
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=85.77 E-value=0.67 Score=33.43 Aligned_cols=31 Identities=13% Similarity=0.138 Sum_probs=22.5
Q ss_pred cHHHHHHHHHHHcCCcEEEEcCCCChHHHHHH
Q psy9277 56 SAIQQRSIKPIVKGRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 56 ~~~Q~~~i~~i~~g~~v~v~aptGsGKTl~~l 87 (178)
+..++.. ..+..|..+++.|++|||||...-
T Consensus 13 ~~~~r~~-~~~~~~~~i~~~G~~GsGKsT~~~ 43 (211)
T 1m7g_A 13 TRSERTE-LRNQRGLTIWLTGLSASGKSTLAV 43 (211)
T ss_dssp CHHHHHH-HHTSSCEEEEEECSTTSSHHHHHH
T ss_pred CHHHhhc-ccCCCCCEEEEECCCCCCHHHHHH
Confidence 4555554 345568889999999999997653
No 268
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=85.73 E-value=0.41 Score=39.06 Aligned_cols=56 Identities=13% Similarity=0.054 Sum_probs=32.5
Q ss_pred ccccccccCCCCHHHHHHHHhCCCCCCcHHHHH-HHH-HHHcCCcEEEEcCCCChHHHHHH
Q psy9277 29 EVVSTFDNMGLREDLLRGIYAYGFEKPSAIQQR-SIK-PIVKGRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 29 ~~~~~f~~~~l~~~i~~~l~~~g~~~~~~~Q~~-~i~-~i~~g~~v~v~aptGsGKTl~~l 87 (178)
.+..+|+++.=.+.+.+.|.+.-. ++.... .+. .....+.+++.||+|+|||...-
T Consensus 128 ~~~~~~~di~G~~~~k~~l~~~v~---~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~ 185 (444)
T 2zan_A 128 RPNVKWSDVAGLEGAKEALKEAVI---LPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAK 185 (444)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHT---HHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHH
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHH---HHhhCHHHhhccCCCCceEEEECCCCCCHHHHHH
Confidence 345678888766666666653210 111100 000 11224789999999999997653
No 269
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=85.71 E-value=1.5 Score=33.95 Aligned_cols=44 Identities=14% Similarity=0.181 Sum_probs=28.9
Q ss_pred cccccCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCChHHHHHH
Q psy9277 32 STFDNMGLREDLLRGIYAYGFEKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 32 ~~f~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~i~~g~~v~v~aptGsGKTl~~l 87 (178)
.+|+++--++.+.+.|+..-... -...++++.||+|+|||...-
T Consensus 11 ~~~~~~vg~~~~~~~l~~~~~~~------------~~~~~~ll~Gp~G~GKTtl~~ 54 (354)
T 1sxj_E 11 KSLNALSHNEELTNFLKSLSDQP------------RDLPHLLLYGPNGTGKKTRCM 54 (354)
T ss_dssp CSGGGCCSCHHHHHHHHTTTTCT------------TCCCCEEEECSTTSSHHHHHH
T ss_pred CCHHHhcCCHHHHHHHHHHHhhC------------CCCCeEEEECCCCCCHHHHHH
Confidence 45777666777777776431110 123359999999999997653
No 270
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=85.69 E-value=0.89 Score=36.13 Aligned_cols=39 Identities=21% Similarity=0.166 Sum_probs=24.8
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcCc
Q psy9277 68 KGRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSPT 109 (178)
Q Consensus 68 ~g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~Pt 109 (178)
.|.-+++.+|+|+|||...+..+ ..+.. .+..++|+...
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la-~~~~~--~gg~VlyId~E 98 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAI-AEAQK--MGGVAAFIDAE 98 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHH-HHHHH--TTCCEEEEESS
T ss_pred CCcEEEEECCCCCCHHHHHHHHH-HHHHh--cCCeEEEEecc
Confidence 36789999999999997654333 33322 33456666543
No 271
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=85.66 E-value=0.37 Score=35.84 Aligned_cols=20 Identities=30% Similarity=0.429 Sum_probs=16.6
Q ss_pred HcCCcEEEEcCCCChHHHHH
Q psy9277 67 VKGRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 67 ~~g~~v~v~aptGsGKTl~~ 86 (178)
..|.-+.+.||+|||||...
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl 48 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTML 48 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHH
Confidence 34788999999999999653
No 272
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=85.63 E-value=0.44 Score=42.01 Aligned_cols=56 Identities=20% Similarity=0.243 Sum_probs=34.6
Q ss_pred ccccccccCCCCHHHHHHHHhCCCCCCcHHHHHHHHH--HHcCCcEEEEcCCCChHHHHH
Q psy9277 29 EVVSTFDNMGLREDLLRGIYAYGFEKPSAIQQRSIKP--IVKGRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 29 ~~~~~f~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~--i~~g~~v~v~aptGsGKTl~~ 86 (178)
.+..+|++++.-++..+.|++.= ..|... .+.+.. +...+.+++.||+|+|||+.+
T Consensus 471 ~p~v~w~diggl~~~k~~l~e~v-~~p~~~-p~~f~~~g~~~~~gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 471 VPQVTWEDIGGLEDVKRELQELV-QYPVEH-PDKFLKFGMTPSKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CCCCCSTTCCSCHHHHHHHTTTT-TTTTTC-SGGGSSSCCCCCSCCEEESSTTSSHHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHH-HhhhhC-HHHHHhcCCCCCceEEEecCCCCCchHHH
Confidence 34567999988888888886542 111110 000100 112468999999999999665
No 273
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=85.55 E-value=0.43 Score=37.44 Aligned_cols=18 Identities=17% Similarity=0.198 Sum_probs=15.0
Q ss_pred CcEEEEcCCCChHHHHHH
Q psy9277 70 RDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 70 ~~v~v~aptGsGKTl~~l 87 (178)
+.++++||||||||....
T Consensus 6 ~~i~i~GptGsGKTtla~ 23 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAM 23 (323)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 368999999999997654
No 274
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=85.48 E-value=0.31 Score=34.39 Aligned_cols=18 Identities=28% Similarity=0.418 Sum_probs=14.7
Q ss_pred CcEEEEcCCCChHHHHHH
Q psy9277 70 RDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 70 ~~v~v~aptGsGKTl~~l 87 (178)
.-+++.||+|+|||...-
T Consensus 3 ~ii~l~G~~GaGKSTl~~ 20 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCK 20 (189)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 457899999999997653
No 275
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=85.47 E-value=4.3 Score=32.98 Aligned_cols=86 Identities=17% Similarity=0.171 Sum_probs=42.6
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEc--CcHHHHHHHHHHHHHhccCCCceEEEEEcCccHH----HH
Q psy9277 70 RDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLS--PTRELAVQIQKVVLALGDFMNVQCHACIGGTNLS----ED 143 (178)
Q Consensus 70 ~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~--Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~----~~ 143 (178)
+-+++.+++|+|||.....-+. .+.. .+.+++++. +.+..+.++...+. ...++.+.....+.+.. +.
T Consensus 99 ~vi~i~G~~GsGKTT~~~~LA~-~l~~--~g~~Vllvd~D~~r~aa~~qL~~~~---~~~gv~v~~~~~~~~p~~i~~~~ 172 (425)
T 2ffh_A 99 NLWFLVGLQGSGKTTTAAKLAL-YYKG--KGRRPLLVAADTQRPAAREQLRLLG---EKVGVPVLEVMDGESPESIRRRV 172 (425)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH-HHHT--TTCCEEEEECCSSCHHHHHHHHHHH---HHHTCCEEECCTTCCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-HHHH--cCCeEEEeeccccCchhHHHHHHhc---ccCCccEEecCCCCCHHHHHHHH
Confidence 3577889999999976543222 2222 344565554 33444443333222 22245443322222211 12
Q ss_pred HHHh-cCCCc-EEEeChHHH
Q psy9277 144 LRKL-DYGQH-VVSGTPGRV 161 (178)
Q Consensus 144 ~~~~-~~~~~-IlV~TP~~l 161 (178)
.... ..++| |||=||+++
T Consensus 173 l~~~~~~~~DvVIIDTaG~l 192 (425)
T 2ffh_A 173 EEKARLEARDLILVDTAGRL 192 (425)
T ss_dssp HHHHHHTTCSEEEEECCCCS
T ss_pred HHHHHHCCCCEEEEcCCCcc
Confidence 2223 24565 778899875
No 276
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=85.42 E-value=0.44 Score=34.03 Aligned_cols=19 Identities=21% Similarity=0.351 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCChHHHHHH
Q psy9277 69 GRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 69 g~~v~v~aptGsGKTl~~l 87 (178)
.+-++++|++|||||...-
T Consensus 18 ~~~I~l~G~~GsGKSTla~ 36 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGE 36 (202)
T ss_dssp SSCEEEECSTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3579999999999997653
No 277
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=85.23 E-value=0.38 Score=34.73 Aligned_cols=19 Identities=21% Similarity=0.240 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCChHHHHH
Q psy9277 68 KGRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 68 ~g~~v~v~aptGsGKTl~~ 86 (178)
.|.-+.+.||+|||||...
T Consensus 21 ~g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp SCEEEEEECCTTSCTHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4678899999999999654
No 278
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=85.22 E-value=0.4 Score=33.69 Aligned_cols=18 Identities=28% Similarity=0.278 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCChHHHHH
Q psy9277 69 GRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 69 g~~v~v~aptGsGKTl~~ 86 (178)
+.-++++|++|||||...
T Consensus 5 ~~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLS 22 (193)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 457899999999999765
No 279
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=85.15 E-value=0.47 Score=37.51 Aligned_cols=17 Identities=18% Similarity=0.200 Sum_probs=14.5
Q ss_pred cEEEEcCCCChHHHHHH
Q psy9277 71 DVIAQAQSGTGKTATFS 87 (178)
Q Consensus 71 ~v~v~aptGsGKTl~~l 87 (178)
-++|+||||||||....
T Consensus 9 lI~I~GptgSGKTtla~ 25 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSI 25 (340)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred eEEEECCCcCcHHHHHH
Confidence 58899999999997653
No 280
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=85.13 E-value=0.41 Score=33.59 Aligned_cols=19 Identities=21% Similarity=0.228 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCChHHHHHH
Q psy9277 69 GRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 69 g~~v~v~aptGsGKTl~~l 87 (178)
+..+++.|++|||||...-
T Consensus 3 ~~~I~l~G~~GsGKsT~a~ 21 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCA 21 (196)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 4568999999999997753
No 281
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=85.07 E-value=1.6 Score=35.52 Aligned_cols=41 Identities=20% Similarity=0.116 Sum_probs=27.1
Q ss_pred HHcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcC
Q psy9277 66 IVKGRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSP 108 (178)
Q Consensus 66 i~~g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~P 108 (178)
+..|.-+++.|++|+|||...+--+...... .+..++|+..
T Consensus 200 l~~G~liiI~G~pG~GKTtl~l~ia~~~~~~--~g~~Vl~~s~ 240 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTAFALNIAQNVATK--TNENVAIFSL 240 (454)
T ss_dssp BCTTCEEEEECCTTSCHHHHHHHHHHHHHHH--SSCCEEEEES
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHh--CCCcEEEEEC
Confidence 3447789999999999997765444433322 2346777763
No 282
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=85.03 E-value=0.49 Score=33.55 Aligned_cols=16 Identities=31% Similarity=0.578 Sum_probs=13.8
Q ss_pred cEEEEcCCCChHHHHH
Q psy9277 71 DVIAQAQSGTGKTATF 86 (178)
Q Consensus 71 ~v~v~aptGsGKTl~~ 86 (178)
.+.+.||+|+|||...
T Consensus 2 ~i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999765
No 283
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=85.01 E-value=1.6 Score=35.52 Aligned_cols=41 Identities=22% Similarity=0.024 Sum_probs=26.8
Q ss_pred HHcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcC
Q psy9277 66 IVKGRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSP 108 (178)
Q Consensus 66 i~~g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~P 108 (178)
+..|.-+++.|++|+|||...+--+.+.... .+..++|+..
T Consensus 197 l~~G~l~ii~G~pg~GKT~lal~ia~~~a~~--~g~~vl~~sl 237 (444)
T 2q6t_A 197 LGPGSLNIIAARPAMGKTAFALTIAQNAALK--EGVGVGIYSL 237 (444)
T ss_dssp CCTTCEEEEEECTTSCHHHHHHHHHHHHHHT--TCCCEEEEES
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh--CCCeEEEEEC
Confidence 3346789999999999997665444443322 2346777664
No 284
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=84.98 E-value=0.53 Score=32.75 Aligned_cols=18 Identities=17% Similarity=0.364 Sum_probs=15.1
Q ss_pred CcEEEEcCCCChHHHHHH
Q psy9277 70 RDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 70 ~~v~v~aptGsGKTl~~l 87 (178)
+.+++.+++|||||...-
T Consensus 5 ~~i~i~G~~GsGKsTla~ 22 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLAR 22 (175)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHH
Confidence 368999999999997653
No 285
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=84.87 E-value=0.42 Score=36.63 Aligned_cols=18 Identities=28% Similarity=0.357 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCChHHHHH
Q psy9277 69 GRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 69 g~~v~v~aptGsGKTl~~ 86 (178)
+.-++++||+|||||...
T Consensus 33 ~~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp CEEEEEECCTTSCTHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 356899999999999765
No 286
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=84.75 E-value=0.5 Score=33.36 Aligned_cols=19 Identities=21% Similarity=0.317 Sum_probs=16.4
Q ss_pred cCCcEEEEcCCCChHHHHH
Q psy9277 68 KGRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 68 ~g~~v~v~aptGsGKTl~~ 86 (178)
.+.-++++|++|||||...
T Consensus 11 ~~~~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQC 29 (199)
T ss_dssp HSCEEEEEECTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4678999999999999765
No 287
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=84.69 E-value=0.78 Score=35.72 Aligned_cols=19 Identities=32% Similarity=0.473 Sum_probs=16.4
Q ss_pred CCcEEEEcCCCChHHHHHH
Q psy9277 69 GRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 69 g~~v~v~aptGsGKTl~~l 87 (178)
+..+++.||+|+|||...-
T Consensus 45 ~~~vli~G~~G~GKTtl~~ 63 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVK 63 (386)
T ss_dssp CCCEEEEECTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 6789999999999997653
No 288
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=84.67 E-value=0.54 Score=33.09 Aligned_cols=19 Identities=21% Similarity=0.314 Sum_probs=16.6
Q ss_pred cCCcEEEEcCCCChHHHHH
Q psy9277 68 KGRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 68 ~g~~v~v~aptGsGKTl~~ 86 (178)
.+..+++.|++|||||...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~ 26 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQC 26 (196)
T ss_dssp TSCEEEEEECTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4678999999999999765
No 289
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=84.67 E-value=0.61 Score=32.64 Aligned_cols=18 Identities=17% Similarity=0.250 Sum_probs=15.2
Q ss_pred CcEEEEcCCCChHHHHHH
Q psy9277 70 RDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 70 ~~v~v~aptGsGKTl~~l 87 (178)
..++++|++|||||...-
T Consensus 3 ~~I~l~G~~GsGKsT~a~ 20 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGR 20 (184)
T ss_dssp CSEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 468999999999997753
No 290
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=84.63 E-value=1.3 Score=38.15 Aligned_cols=53 Identities=19% Similarity=0.208 Sum_probs=42.1
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccHHHHHHHhcCCCcEEEeCh
Q psy9277 99 RETQVLCLSPTRELAVQIQKVVLALGDFMNVQCHACIGGTNLSEDLRKLDYGQHVVSGTP 158 (178)
Q Consensus 99 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~IlV~TP 158 (178)
.+.++||.+++++-+.++++.+++. ++.+..++|+.+..+. .+.+.+|||+|.
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~----g~~v~~lHG~l~q~er---~~~~~~VLVATd 447 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGL----GINAVAYYRGLDVSVI---PTIGDVVVVATD 447 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECTTSCGGGS---CSSSCEEEEECT
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhC----CCcEEEecCCCCHHHH---HhCCCcEEEECC
Confidence 3458999999999999999888754 7889999999876642 234569999994
No 291
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=84.63 E-value=1.7 Score=32.88 Aligned_cols=43 Identities=26% Similarity=0.394 Sum_probs=28.4
Q ss_pred cccccCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCChHHHHHH
Q psy9277 32 STFDNMGLREDLLRGIYAYGFEKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 32 ~~f~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~i~~g~~v~v~aptGsGKTl~~l 87 (178)
.+|+++--++...+.+.+. +.. -...++++.||+|+|||....
T Consensus 14 ~~~~~~~g~~~~~~~l~~~-l~~------------~~~~~~ll~G~~G~GKt~la~ 56 (319)
T 2chq_A 14 RTLDEVVGQDEVIQRLKGY-VER------------KNIPHLLFSGPPGTGKTATAI 56 (319)
T ss_dssp SSGGGSCSCHHHHHHHHTT-TTT------------TCCCCEEEESSSSSSHHHHHH
T ss_pred CCHHHHhCCHHHHHHHHHH-HhC------------CCCCeEEEECcCCcCHHHHHH
Confidence 4577766677777777543 111 122369999999999997653
No 292
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=84.55 E-value=1.7 Score=37.01 Aligned_cols=54 Identities=11% Similarity=0.000 Sum_probs=39.9
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccHHHHHHHh-cCCCcEEEeCh
Q psy9277 100 ETQVLCLSPTRELAVQIQKVVLALGDFMNVQCHACIGGTNLSEDLRKL-DYGQHVVSGTP 158 (178)
Q Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~IlV~TP 158 (178)
+.++||.++++.-+..+++.++.. ++.+..++|+.... ..... ....+|||+|.
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~R~~-~l~~F~~g~~~VLVaTd 409 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTFDT-EYPKTKLTDWDFVVTTD 409 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTTHHH-HTTHHHHSCCSEEEECG
T ss_pred CCCEEEEECChhHHHHHHHHHHHc----CCcEEEEChHHHHH-HHHhhcCCCcEEEEECc
Confidence 458999999999999999998765 67788888754332 22222 24578999995
No 293
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=84.50 E-value=0.45 Score=34.41 Aligned_cols=23 Identities=22% Similarity=0.101 Sum_probs=18.4
Q ss_pred HHcCCcEEEEcCCCChHHHHHHH
Q psy9277 66 IVKGRDVIAQAQSGTGKTATFSI 88 (178)
Q Consensus 66 i~~g~~v~v~aptGsGKTl~~ll 88 (178)
+..|.-+.+.+|+|+|||.....
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~ 44 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHT 44 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHH
Confidence 34578899999999999976543
No 294
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=84.49 E-value=0.53 Score=33.90 Aligned_cols=17 Identities=18% Similarity=0.391 Sum_probs=14.4
Q ss_pred cEEEEcCCCChHHHHHH
Q psy9277 71 DVIAQAQSGTGKTATFS 87 (178)
Q Consensus 71 ~v~v~aptGsGKTl~~l 87 (178)
.+++.|++|||||...-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999997653
No 295
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=84.49 E-value=0.73 Score=36.08 Aligned_cols=17 Identities=35% Similarity=0.483 Sum_probs=15.0
Q ss_pred cEEEEcCCCChHHHHHH
Q psy9277 71 DVIAQAQSGTGKTATFS 87 (178)
Q Consensus 71 ~v~v~aptGsGKTl~~l 87 (178)
.+++.||+|+|||...-
T Consensus 46 ~~li~G~~G~GKTtl~~ 62 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLR 62 (389)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 79999999999997653
No 296
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=84.49 E-value=0.51 Score=39.12 Aligned_cols=19 Identities=32% Similarity=0.422 Sum_probs=16.5
Q ss_pred CCcEEEEcCCCChHHHHHH
Q psy9277 69 GRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 69 g~~v~v~aptGsGKTl~~l 87 (178)
..++++.||+|+|||+..-
T Consensus 238 ~~~vLL~GppGtGKT~lAr 256 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIAR 256 (489)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CCcEEEECcCCCCHHHHHH
Confidence 5789999999999997653
No 297
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=84.47 E-value=0.36 Score=35.38 Aligned_cols=21 Identities=29% Similarity=0.314 Sum_probs=13.5
Q ss_pred HHcCCcEEEEcCCCChHHHHH
Q psy9277 66 IVKGRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 66 i~~g~~v~v~aptGsGKTl~~ 86 (178)
+..|+-+.+.||+|||||...
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp EECCCEEEEECSCC----CHH
T ss_pred cCCCCEEEEECCCCCCHHHHH
Confidence 345788999999999999765
No 298
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=84.45 E-value=1.4 Score=35.10 Aligned_cols=37 Identities=16% Similarity=0.114 Sum_probs=23.9
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEc
Q psy9277 68 KGRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLS 107 (178)
Q Consensus 68 ~g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~ 107 (178)
.|.-+++.+++|+|||...+-.+.+.. . .+..++|+.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~-~--~g~~vlyi~ 109 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQ-K--AGGTCAFID 109 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH-H--TTCCEEEEE
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHH-H--CCCeEEEEE
Confidence 357899999999999977654443322 2 233555554
No 299
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=84.24 E-value=0.56 Score=36.59 Aligned_cols=18 Identities=28% Similarity=0.372 Sum_probs=15.8
Q ss_pred CcEEEEcCCCChHHHHHH
Q psy9277 70 RDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 70 ~~v~v~aptGsGKTl~~l 87 (178)
..+++.||+|+|||...-
T Consensus 52 ~~~ll~Gp~G~GKTTLa~ 69 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAH 69 (334)
T ss_dssp CCEEEESSTTSSHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 689999999999997754
No 300
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=84.17 E-value=0.56 Score=33.82 Aligned_cols=17 Identities=18% Similarity=0.309 Sum_probs=14.4
Q ss_pred cEEEEcCCCChHHHHHH
Q psy9277 71 DVIAQAQSGTGKTATFS 87 (178)
Q Consensus 71 ~v~v~aptGsGKTl~~l 87 (178)
.+++.|++|||||...-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 48899999999997653
No 301
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=84.13 E-value=0.63 Score=33.04 Aligned_cols=19 Identities=21% Similarity=0.391 Sum_probs=16.3
Q ss_pred cCCcEEEEcCCCChHHHHH
Q psy9277 68 KGRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 68 ~g~~v~v~aptGsGKTl~~ 86 (178)
.++.+++.|+.|||||...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~ 21 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQC 21 (204)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 4678999999999999765
No 302
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=84.12 E-value=0.28 Score=38.06 Aligned_cols=19 Identities=26% Similarity=0.370 Sum_probs=16.1
Q ss_pred CCcEEEEcCCCChHHHHHH
Q psy9277 69 GRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 69 g~~v~v~aptGsGKTl~~l 87 (178)
..++++.||+|+|||...-
T Consensus 45 ~~~vLl~G~~GtGKT~la~ 63 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVR 63 (350)
T ss_dssp GCCEEEECCGGGCTTHHHH
T ss_pred CceEEEECCCCccHHHHHH
Confidence 4579999999999997653
No 303
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=84.02 E-value=0.99 Score=37.75 Aligned_cols=30 Identities=13% Similarity=0.004 Sum_probs=20.6
Q ss_pred eEEEEEcCccHHHHHHHhcCCCcEEEeChH
Q psy9277 130 QCHACIGGTNLSEDLRKLDYGQHVVSGTPG 159 (178)
Q Consensus 130 ~~~~~~g~~~~~~~~~~~~~~~~IlV~TP~ 159 (178)
++.++.++.........+..++.|||||=.
T Consensus 237 ~~LLVLDdv~~~~~l~~l~~~~~ilvTsR~ 266 (591)
T 1z6t_A 237 RSLLILDDVWDSWVLKAFDSQCQILLTTRD 266 (591)
T ss_dssp TCEEEEEEECCHHHHHTTCSSCEEEEEESC
T ss_pred CeEEEEeCCCCHHHHHHhcCCCeEEEECCC
Confidence 456666666655566666677899998843
No 304
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=84.01 E-value=0.57 Score=34.19 Aligned_cols=19 Identities=16% Similarity=0.221 Sum_probs=15.8
Q ss_pred cCCcEEEEcCCCChHHHHH
Q psy9277 68 KGRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 68 ~g~~v~v~aptGsGKTl~~ 86 (178)
.+..+++.|++|||||...
T Consensus 6 ~~~~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVS 24 (227)
T ss_dssp -CCEEEEEECTTSSHHHHH
T ss_pred cCcEEEEECCCCCCHHHHH
Confidence 3567999999999999765
No 305
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=83.96 E-value=1.7 Score=32.37 Aligned_cols=20 Identities=30% Similarity=0.343 Sum_probs=16.4
Q ss_pred cEEEEcCCCChHHHHHHHHH
Q psy9277 71 DVIAQAQSGTGKTATFSISI 90 (178)
Q Consensus 71 ~v~v~aptGsGKTl~~ll~i 90 (178)
++++.++.|+|||...+--.
T Consensus 8 ~I~~~~kgGvGKTt~a~~la 27 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAA 27 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 79999999999998865433
No 306
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=83.96 E-value=0.3 Score=35.05 Aligned_cols=24 Identities=17% Similarity=-0.026 Sum_probs=18.5
Q ss_pred HHHHcCCcEEEEcCCCChHHHHHH
Q psy9277 64 KPIVKGRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 64 ~~i~~g~~v~v~aptGsGKTl~~l 87 (178)
+.+..+.-+.+.|++|||||...-
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~ 39 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAK 39 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHH
T ss_pred ccCCCCeEEEEECCCCCCHHHHHH
Confidence 344556778999999999997653
No 307
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=83.84 E-value=0.5 Score=33.91 Aligned_cols=19 Identities=21% Similarity=0.097 Sum_probs=15.6
Q ss_pred cCCcEEEEcCCCChHHHHH
Q psy9277 68 KGRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 68 ~g~~v~v~aptGsGKTl~~ 86 (178)
.|.-+.+.||+|||||...
T Consensus 5 ~~~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLA 23 (211)
T ss_dssp CCEEEEEEESTTSSHHHHH
T ss_pred CcEEEEEECCCCCCHHHHH
Confidence 3556889999999999765
No 308
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=83.81 E-value=0.53 Score=38.17 Aligned_cols=17 Identities=18% Similarity=0.317 Sum_probs=14.0
Q ss_pred cEEEEcCCCChHHHHHH
Q psy9277 71 DVIAQAQSGTGKTATFS 87 (178)
Q Consensus 71 ~v~v~aptGsGKTl~~l 87 (178)
-++|.||||+|||....
T Consensus 4 ~i~i~GptgsGKttla~ 20 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSI 20 (409)
T ss_dssp EEEEEECSSSSHHHHHH
T ss_pred EEEEECcchhhHHHHHH
Confidence 37899999999997654
No 309
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=83.75 E-value=0.5 Score=35.13 Aligned_cols=20 Identities=30% Similarity=0.401 Sum_probs=16.7
Q ss_pred HcCCcEEEEcCCCChHHHHH
Q psy9277 67 VKGRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 67 ~~g~~v~v~aptGsGKTl~~ 86 (178)
..|.-+.+.||+|||||...
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl 48 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLL 48 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 34788999999999999654
No 310
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=83.72 E-value=0.61 Score=32.14 Aligned_cols=18 Identities=17% Similarity=0.322 Sum_probs=15.7
Q ss_pred CcEEEEcCCCChHHHHHH
Q psy9277 70 RDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 70 ~~v~v~aptGsGKTl~~l 87 (178)
+++++.|+.|||||...-
T Consensus 8 ~~i~l~G~~GsGKSTva~ 25 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQ 25 (168)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 589999999999997764
No 311
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=83.70 E-value=2 Score=31.63 Aligned_cols=40 Identities=10% Similarity=0.172 Sum_probs=26.1
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcCcHH
Q psy9277 69 GRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSPTRE 111 (178)
Q Consensus 69 g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~Pt~~ 111 (178)
|+=.+++++-|+|||...+--+... .. .+.+++++.|.+.
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~-~~--~g~kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRT-QF--AKQHAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHH-HH--TTCCEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHH-HH--CCCEEEEEEeccC
Confidence 4455688888999997765444333 22 4568888888764
No 312
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=83.58 E-value=0.64 Score=33.67 Aligned_cols=19 Identities=16% Similarity=0.258 Sum_probs=16.1
Q ss_pred CCcEEEEcCCCChHHHHHH
Q psy9277 69 GRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 69 g~~v~v~aptGsGKTl~~l 87 (178)
+..+++.|++|||||...-
T Consensus 4 ~~~I~l~G~~GsGKsT~a~ 22 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAP 22 (220)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 5679999999999997653
No 313
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=83.51 E-value=0.56 Score=32.76 Aligned_cols=19 Identities=37% Similarity=0.455 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCChHHHHH
Q psy9277 68 KGRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 68 ~g~~v~v~aptGsGKTl~~ 86 (178)
.|..+++.|+.|||||...
T Consensus 4 ~g~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4677899999999999764
No 314
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=83.50 E-value=0.69 Score=31.88 Aligned_cols=18 Identities=17% Similarity=0.200 Sum_probs=15.1
Q ss_pred CcEEEEcCCCChHHHHHH
Q psy9277 70 RDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 70 ~~v~v~aptGsGKTl~~l 87 (178)
+.+++.|++|||||...-
T Consensus 3 ~~I~l~G~~GsGKsT~a~ 20 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGR 20 (173)
T ss_dssp CCEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 468999999999997653
No 315
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=83.45 E-value=1.4 Score=34.61 Aligned_cols=43 Identities=14% Similarity=0.052 Sum_probs=28.3
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcCcHHHH
Q psy9277 69 GRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSPTRELA 113 (178)
Q Consensus 69 g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~Pt~~L~ 113 (178)
| -+.+.+|+|+|||...+-.+.+... ...+.+++|+....++-
T Consensus 29 G-iteI~G~pGsGKTtL~Lq~~~~~~~-~g~g~~vlyId~E~s~~ 71 (333)
T 3io5_A 29 G-LLILAGPSKSFKSNFGLTMVSSYMR-QYPDAVCLFYDSEFGIT 71 (333)
T ss_dssp E-EEEEEESSSSSHHHHHHHHHHHHHH-HCTTCEEEEEESSCCCC
T ss_pred C-eEEEECCCCCCHHHHHHHHHHHHHh-cCCCceEEEEeccchhh
Confidence 5 5899999999999876655544332 21245777777655543
No 316
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=83.44 E-value=3.3 Score=38.02 Aligned_cols=34 Identities=6% Similarity=0.057 Sum_probs=26.1
Q ss_pred CceEEEEEcCccHHHHHHHhcCCCcEEEeChHHH
Q psy9277 128 NVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRV 161 (178)
Q Consensus 128 ~~~~~~~~g~~~~~~~~~~~~~~~~IlV~TP~~l 161 (178)
+-++.++.++....+.+..+..++.|||||=.+.
T Consensus 243 ~KRvLLVLDDVwd~eqLe~f~pGSRILVTTRd~~ 276 (1221)
T 1vt4_I 243 YENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQ 276 (1221)
T ss_dssp TSSCEEEEESCCCHHHHHHHHSSCCEEEECSCSH
T ss_pred CCCEEEEEeCcChHHHHHhhCCCeEEEEeccChH
Confidence 4567788888777777767778899999996554
No 317
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=83.42 E-value=0.93 Score=36.09 Aligned_cols=24 Identities=29% Similarity=0.553 Sum_probs=18.1
Q ss_pred HHHHHcCC--cEEEEcCCCChHHHHH
Q psy9277 63 IKPIVKGR--DVIAQAQSGTGKTATF 86 (178)
Q Consensus 63 i~~i~~g~--~v~v~aptGsGKTl~~ 86 (178)
+..++.|. .++..|+||||||...
T Consensus 97 v~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 97 VSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 34456676 4788899999999775
No 318
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=83.34 E-value=0.92 Score=37.21 Aligned_cols=19 Identities=26% Similarity=0.366 Sum_probs=16.4
Q ss_pred CCcEEEEcCCCChHHHHHH
Q psy9277 69 GRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 69 g~~v~v~aptGsGKTl~~l 87 (178)
..++++.||+|+|||...-
T Consensus 201 ~~~~LL~G~pG~GKT~la~ 219 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAE 219 (468)
T ss_dssp SCEEEEESCTTTTTHHHHH
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 5699999999999997754
No 319
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=83.33 E-value=1.2 Score=34.55 Aligned_cols=16 Identities=25% Similarity=0.320 Sum_probs=13.3
Q ss_pred cEEEEcCCCChHHHHH
Q psy9277 71 DVIAQAQSGTGKTATF 86 (178)
Q Consensus 71 ~v~v~aptGsGKTl~~ 86 (178)
-+++.|+.|||||...
T Consensus 6 v~~i~G~~GaGKTTll 21 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLL 21 (318)
T ss_dssp EEEEEESSSSSCHHHH
T ss_pred EEEEEecCCCCHHHHH
Confidence 3689999999999654
No 320
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=83.32 E-value=0.68 Score=32.99 Aligned_cols=19 Identities=21% Similarity=0.246 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCChHHHHHH
Q psy9277 69 GRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 69 g~~v~v~aptGsGKTl~~l 87 (178)
+..+++.|++|||||...-
T Consensus 20 ~~~I~l~G~~GsGKST~a~ 38 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAV 38 (201)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4579999999999997653
No 321
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=83.27 E-value=1 Score=37.34 Aligned_cols=19 Identities=26% Similarity=0.293 Sum_probs=16.2
Q ss_pred CCcEEEEcCCCChHHHHHH
Q psy9277 69 GRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 69 g~~v~v~aptGsGKTl~~l 87 (178)
.+.++++||+|+|||.+.-
T Consensus 77 ~~~lLL~GppGtGKTtla~ 95 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAH 95 (516)
T ss_dssp CSEEEEECSTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3689999999999997754
No 322
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=83.14 E-value=0.6 Score=32.65 Aligned_cols=16 Identities=25% Similarity=0.345 Sum_probs=13.8
Q ss_pred cEEEEcCCCChHHHHH
Q psy9277 71 DVIAQAQSGTGKTATF 86 (178)
Q Consensus 71 ~v~v~aptGsGKTl~~ 86 (178)
.+++.|++|||||...
T Consensus 3 ~I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999765
No 323
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=83.11 E-value=1.1 Score=38.10 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=20.2
Q ss_pred HHHHHcCCcEEEEcCCCChHHHHHH
Q psy9277 63 IKPIVKGRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 63 i~~i~~g~~v~v~aptGsGKTl~~l 87 (178)
-..+..|..+++.||+|+|||..+-
T Consensus 54 ~~~i~~g~~vll~Gp~GtGKTtlar 78 (604)
T 3k1j_A 54 KTAANQKRHVLLIGEPGTGKSMLGQ 78 (604)
T ss_dssp HHHHHTTCCEEEECCTTSSHHHHHH
T ss_pred cccccCCCEEEEEeCCCCCHHHHHH
Confidence 3456678999999999999997653
No 324
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=83.11 E-value=0.67 Score=31.80 Aligned_cols=16 Identities=25% Similarity=0.405 Sum_probs=13.6
Q ss_pred cEEEEcCCCChHHHHH
Q psy9277 71 DVIAQAQSGTGKTATF 86 (178)
Q Consensus 71 ~v~v~aptGsGKTl~~ 86 (178)
-.++.+|+|+|||...
T Consensus 25 ~~~I~G~NGsGKStil 40 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLL 40 (149)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4689999999999764
No 325
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=83.11 E-value=1.9 Score=39.51 Aligned_cols=58 Identities=19% Similarity=0.058 Sum_probs=45.5
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccHHHHHHHhc----CCCcEEEeCh
Q psy9277 99 RETQVLCLSPTRELAVQIQKVVLALGDFMNVQCHACIGGTNLSEDLRKLD----YGQHVVSGTP 158 (178)
Q Consensus 99 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~IlV~TP 158 (178)
.+.+++|++++++-+..+++.++.... +.++..++|+++..++...+. ...+|+|+|-
T Consensus 811 ~g~qvlvf~~~v~~~~~l~~~L~~~~p--~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~ 872 (1151)
T 2eyq_A 811 RGGQVYYLYNDVENIQKAAERLAELVP--EARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT 872 (1151)
T ss_dssp TTCEEEEECCCSSCHHHHHHHHHHHCT--TSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESS
T ss_pred cCCeEEEEECCHHHHHHHHHHHHHhCC--CCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECC
Confidence 457899999999999999999887643 577888999988776554432 3579999994
No 326
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=83.10 E-value=1.5 Score=33.34 Aligned_cols=17 Identities=24% Similarity=0.372 Sum_probs=14.9
Q ss_pred cEEEEcCCCChHHHHHH
Q psy9277 71 DVIAQAQSGTGKTATFS 87 (178)
Q Consensus 71 ~v~v~aptGsGKTl~~l 87 (178)
++++.||+|+|||...-
T Consensus 48 ~~ll~G~~G~GKT~la~ 64 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAAL 64 (327)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred eEEEECcCCCCHHHHHH
Confidence 69999999999997653
No 327
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=82.99 E-value=0.78 Score=35.66 Aligned_cols=20 Identities=20% Similarity=0.107 Sum_probs=17.1
Q ss_pred HcCCcEEEEcCCCChHHHHH
Q psy9277 67 VKGRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 67 ~~g~~v~v~aptGsGKTl~~ 86 (178)
..|+-+.+.||+|+|||...
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl 143 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLC 143 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHH
Confidence 34889999999999999664
No 328
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=82.99 E-value=0.74 Score=33.40 Aligned_cols=19 Identities=16% Similarity=0.237 Sum_probs=16.1
Q ss_pred CCcEEEEcCCCChHHHHHH
Q psy9277 69 GRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 69 g~~v~v~aptGsGKTl~~l 87 (178)
+..+++.|++|||||...-
T Consensus 5 ~~~I~l~G~~GsGKsT~~~ 23 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCE 23 (222)
T ss_dssp SCCEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4679999999999997653
No 329
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=82.92 E-value=0.67 Score=35.01 Aligned_cols=27 Identities=19% Similarity=0.117 Sum_probs=21.5
Q ss_pred HHHHcCCcEEEEcCCCChHHHHHHHHH
Q psy9277 64 KPIVKGRDVIAQAQSGTGKTATFSISI 90 (178)
Q Consensus 64 ~~i~~g~~v~v~aptGsGKTl~~ll~i 90 (178)
.-+..|.-+++.||+|+|||.....-+
T Consensus 25 ggl~~G~i~~i~G~~GsGKTtl~~~l~ 51 (279)
T 1nlf_A 25 PNMVAGTVGALVSPGGAGKSMLALQLA 51 (279)
T ss_dssp TTEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCccCCCEEEEEcCCCCCHHHHHHHHH
Confidence 346678999999999999998765443
No 330
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=82.84 E-value=0.94 Score=45.06 Aligned_cols=21 Identities=29% Similarity=0.466 Sum_probs=17.9
Q ss_pred HHcCCcEEEEcCCCChHHHHH
Q psy9277 66 IVKGRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 66 i~~g~~v~v~aptGsGKTl~~ 86 (178)
+..+++++++||||+|||...
T Consensus 1264 l~~~~~vLL~GPpGtGKT~la 1284 (2695)
T 4akg_A 1264 LNSKRGIILCGPPGSGKTMIM 1284 (2695)
T ss_dssp HHHTCEEEEECSTTSSHHHHH
T ss_pred HHCCCeEEEECCCCCCHHHHH
Confidence 345899999999999999764
No 331
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=82.84 E-value=0.78 Score=32.89 Aligned_cols=19 Identities=32% Similarity=0.501 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCChHHHHHH
Q psy9277 69 GRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 69 g~~v~v~aptGsGKTl~~l 87 (178)
|.-+.+.+|+|+|||...-
T Consensus 1 G~~i~i~G~nG~GKTTll~ 19 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIH 19 (189)
T ss_dssp CCCEEEESCCSSCHHHHHH
T ss_pred CCEEEEECCCCChHHHHHH
Confidence 4568899999999997653
No 332
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=82.82 E-value=0.7 Score=33.43 Aligned_cols=19 Identities=21% Similarity=0.288 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCChHHHHHH
Q psy9277 69 GRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 69 g~~v~v~aptGsGKTl~~l 87 (178)
+..+.+.||+|||||...-
T Consensus 5 ~~~i~i~G~~GsGKSTl~~ 23 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCK 23 (227)
T ss_dssp SCEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3568999999999997653
No 333
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=82.80 E-value=0.62 Score=36.99 Aligned_cols=16 Identities=25% Similarity=0.576 Sum_probs=13.9
Q ss_pred cEEEEcCCCChHHHHH
Q psy9277 71 DVIAQAQSGTGKTATF 86 (178)
Q Consensus 71 ~v~v~aptGsGKTl~~ 86 (178)
-++++||+|+|||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4679999999999776
No 334
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=82.77 E-value=0.64 Score=32.46 Aligned_cols=16 Identities=19% Similarity=0.146 Sum_probs=13.8
Q ss_pred cEEEEcCCCChHHHHH
Q psy9277 71 DVIAQAQSGTGKTATF 86 (178)
Q Consensus 71 ~v~v~aptGsGKTl~~ 86 (178)
-.++.+|+|+|||..+
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 5689999999999765
No 335
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=82.75 E-value=1.1 Score=35.75 Aligned_cols=19 Identities=42% Similarity=0.545 Sum_probs=15.8
Q ss_pred cCCc--EEEEcCCCChHHHHH
Q psy9277 68 KGRD--VIAQAQSGTGKTATF 86 (178)
Q Consensus 68 ~g~~--v~v~aptGsGKTl~~ 86 (178)
.|.+ ++..|+||||||...
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEE
Confidence 3766 699999999999765
No 336
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=82.66 E-value=0.63 Score=32.71 Aligned_cols=20 Identities=35% Similarity=0.398 Sum_probs=16.6
Q ss_pred cCCcEEEEcCCCChHHHHHH
Q psy9277 68 KGRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 68 ~g~~v~v~aptGsGKTl~~l 87 (178)
.+..+++.|+.|||||...-
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~ 31 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIAT 31 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 36679999999999997653
No 337
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=82.64 E-value=2.1 Score=36.48 Aligned_cols=60 Identities=18% Similarity=0.187 Sum_probs=34.3
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEc--------CccHHHHHHHhc---C--CCcEEEeCh
Q psy9277 99 RETQVLCLSPTRELAVQIQKVVLALGDFMNVQCHACIG--------GTNLSEDLRKLD---Y--GQHVVSGTP 158 (178)
Q Consensus 99 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g--------~~~~~~~~~~~~---~--~~~IlV~TP 158 (178)
.+.++||.++++.-+..+++.+.......++++..++| +.+..++...+. . ..+|||+|-
T Consensus 397 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~ 469 (696)
T 2ykg_A 397 PETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATS 469 (696)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEE
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEec
Confidence 45689999999999999999998764333366666654 555554443332 2 468999983
No 338
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=82.63 E-value=0.63 Score=34.15 Aligned_cols=20 Identities=35% Similarity=0.428 Sum_probs=16.9
Q ss_pred HcCCcEEEEcCCCChHHHHH
Q psy9277 67 VKGRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 67 ~~g~~v~v~aptGsGKTl~~ 86 (178)
..|.-+.+.||+|+|||...
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLl 52 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLL 52 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 35888999999999999654
No 339
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=82.53 E-value=2.6 Score=29.72 Aligned_cols=17 Identities=41% Similarity=0.358 Sum_probs=13.7
Q ss_pred CcEEEEcCCCChHHHHH
Q psy9277 70 RDVIAQAQSGTGKTATF 86 (178)
Q Consensus 70 ~~v~v~aptGsGKTl~~ 86 (178)
.-+.+.|++|+|||...
T Consensus 7 ~~i~i~G~sGsGKTTl~ 23 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLL 23 (174)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred eEEEEEeCCCCCHHHHH
Confidence 35789999999999653
No 340
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=82.53 E-value=1.9 Score=31.23 Aligned_cols=38 Identities=11% Similarity=0.071 Sum_probs=26.9
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcCc
Q psy9277 69 GRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSPT 109 (178)
Q Consensus 69 g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~Pt 109 (178)
|+=.++.||.|+|||.-.+-.+-+... .+.+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~---~~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQI---AQYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHH---TTCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHH---cCCeEEEEccc
Confidence 667899999999999665444433322 34678888877
No 341
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=82.48 E-value=0.64 Score=38.46 Aligned_cols=54 Identities=22% Similarity=0.314 Sum_probs=31.8
Q ss_pred ccccccccCCCCHHHHHHHHhCC--CCCCcHHHHHHHHHHH--cCCcEEEEcCCCChHHHHHH
Q psy9277 29 EVVSTFDNMGLREDLLRGIYAYG--FEKPSAIQQRSIKPIV--KGRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 29 ~~~~~f~~~~l~~~i~~~l~~~g--~~~~~~~Q~~~i~~i~--~g~~v~v~aptGsGKTl~~l 87 (178)
.+..+|+++.=.++..+.+++.- +..+. .+..+- -.+.+++.||+|+|||+..-
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~l~~~~-----~~~~~g~~~p~gvLL~GppGtGKT~Lar 67 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEFLKDPS-----KFNRIGARMPKGILLVGPPGTGKTLLAR 67 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHHHHCTH-----HHHTTTCCCCSEEEEECCTTSSHHHHHH
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHhhChH-----HHhhcCCCCCCeEEEECCCCCCHHHHHH
Confidence 34568888876666655554320 11111 111111 14679999999999997753
No 342
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=82.42 E-value=0.75 Score=34.02 Aligned_cols=18 Identities=17% Similarity=0.209 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCChHHHHH
Q psy9277 69 GRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 69 g~~v~v~aptGsGKTl~~ 86 (178)
+..+++.||+|||||...
T Consensus 27 ~~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 578999999999999765
No 343
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=82.32 E-value=0.67 Score=37.92 Aligned_cols=18 Identities=33% Similarity=0.410 Sum_probs=15.5
Q ss_pred CcEEEEcCCCChHHHHHH
Q psy9277 70 RDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 70 ~~v~v~aptGsGKTl~~l 87 (178)
.++++.||+|+|||...-
T Consensus 51 ~~vLL~GppGtGKTtlAr 68 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAE 68 (447)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 479999999999997654
No 344
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=82.27 E-value=0.61 Score=34.94 Aligned_cols=20 Identities=25% Similarity=0.350 Sum_probs=16.9
Q ss_pred HcCCcEEEEcCCCChHHHHH
Q psy9277 67 VKGRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 67 ~~g~~v~v~aptGsGKTl~~ 86 (178)
..|.-+.+.||+|||||...
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl 52 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLT 52 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 35788999999999999654
No 345
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=82.26 E-value=1 Score=35.68 Aligned_cols=23 Identities=30% Similarity=0.575 Sum_probs=17.2
Q ss_pred HHHHcCCc--EEEEcCCCChHHHHH
Q psy9277 64 KPIVKGRD--VIAQAQSGTGKTATF 86 (178)
Q Consensus 64 ~~i~~g~~--v~v~aptGsGKTl~~ 86 (178)
..++.|.| ++..|+||||||...
T Consensus 88 ~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 88 DKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hHhhCCCceEEEEecCCCCCCCeEE
Confidence 34456764 688899999999774
No 346
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=82.24 E-value=0.61 Score=34.46 Aligned_cols=20 Identities=25% Similarity=0.489 Sum_probs=16.8
Q ss_pred HcCCcEEEEcCCCChHHHHH
Q psy9277 67 VKGRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 67 ~~g~~v~v~aptGsGKTl~~ 86 (178)
..|+-+.+.||+|+|||...
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl 51 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLL 51 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 34888999999999999654
No 347
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=82.24 E-value=0.59 Score=35.72 Aligned_cols=19 Identities=26% Similarity=0.496 Sum_probs=16.4
Q ss_pred cCCcEEEEcCCCChHHHHH
Q psy9277 68 KGRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 68 ~g~~v~v~aptGsGKTl~~ 86 (178)
.|.-+.+.||+|||||...
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl 51 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLF 51 (275)
T ss_dssp TTSEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4788999999999999654
No 348
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=82.23 E-value=0.76 Score=31.53 Aligned_cols=16 Identities=13% Similarity=0.038 Sum_probs=14.0
Q ss_pred cEEEEcCCCChHHHHH
Q psy9277 71 DVIAQAQSGTGKTATF 86 (178)
Q Consensus 71 ~v~v~aptGsGKTl~~ 86 (178)
.+++.|+.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVG 17 (168)
T ss_dssp EEEEESCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 5889999999999765
No 349
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=82.14 E-value=0.67 Score=32.98 Aligned_cols=20 Identities=25% Similarity=0.406 Sum_probs=16.3
Q ss_pred cCCcEEEEcCCCChHHHHHH
Q psy9277 68 KGRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 68 ~g~~v~v~aptGsGKTl~~l 87 (178)
.+.-+++.|+.|||||...-
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~ 22 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQAT 22 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHH
Confidence 35678999999999997653
No 350
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=82.11 E-value=0.78 Score=37.60 Aligned_cols=18 Identities=22% Similarity=0.453 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCChHHHHH
Q psy9277 69 GRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 69 g~~v~v~aptGsGKTl~~ 86 (178)
.+++++.+|+|+|||...
T Consensus 50 ~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 468999999999999765
No 351
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=82.11 E-value=0.71 Score=32.27 Aligned_cols=17 Identities=24% Similarity=0.331 Sum_probs=14.6
Q ss_pred CcEEEEcCCCChHHHHH
Q psy9277 70 RDVIAQAQSGTGKTATF 86 (178)
Q Consensus 70 ~~v~v~aptGsGKTl~~ 86 (178)
+.+++.|++|||||...
T Consensus 7 ~~I~l~G~~GsGKsT~~ 23 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQC 23 (194)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 36899999999999765
No 352
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=82.04 E-value=0.64 Score=35.10 Aligned_cols=20 Identities=20% Similarity=0.360 Sum_probs=17.0
Q ss_pred HcCCcEEEEcCCCChHHHHH
Q psy9277 67 VKGRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 67 ~~g~~v~v~aptGsGKTl~~ 86 (178)
..|.-+.+.||+|||||...
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl 63 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIA 63 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35888999999999999664
No 353
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=82.03 E-value=0.79 Score=32.71 Aligned_cols=20 Identities=20% Similarity=0.380 Sum_probs=16.9
Q ss_pred cCCcEEEEcCCCChHHHHHH
Q psy9277 68 KGRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 68 ~g~~v~v~aptGsGKTl~~l 87 (178)
.+.-++++|+.|||||...-
T Consensus 9 ~~~~I~l~G~~GsGKST~~~ 28 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSK 28 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHH
Confidence 46789999999999997653
No 354
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=81.89 E-value=0.6 Score=34.37 Aligned_cols=19 Identities=37% Similarity=0.489 Sum_probs=16.2
Q ss_pred cCCcEEEEcCCCChHHHHH
Q psy9277 68 KGRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 68 ~g~~v~v~aptGsGKTl~~ 86 (178)
.|.-+.+.||+|+|||...
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl 47 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLL 47 (224)
T ss_dssp TTCEEEEEECTTSCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4788899999999999654
No 355
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=81.77 E-value=0.63 Score=35.29 Aligned_cols=19 Identities=26% Similarity=0.440 Sum_probs=16.4
Q ss_pred cCCcEEEEcCCCChHHHHH
Q psy9277 68 KGRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 68 ~g~~v~v~aptGsGKTl~~ 86 (178)
.|.-+.+.||+|||||...
T Consensus 36 ~Ge~~~liG~nGsGKSTLl 54 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLL 54 (266)
T ss_dssp TTCEEEEECCTTSCHHHHH
T ss_pred CCCEEEEECCCCCcHHHHH
Confidence 4788999999999999654
No 356
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=81.76 E-value=0.83 Score=32.61 Aligned_cols=20 Identities=15% Similarity=0.325 Sum_probs=17.0
Q ss_pred cCCcEEEEcCCCChHHHHHH
Q psy9277 68 KGRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 68 ~g~~v~v~aptGsGKTl~~l 87 (178)
.+.-++++|+.|||||...-
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~ 27 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSR 27 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 46789999999999997653
No 357
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=81.70 E-value=1.3 Score=35.21 Aligned_cols=23 Identities=35% Similarity=0.577 Sum_probs=17.4
Q ss_pred HHHHcCC--cEEEEcCCCChHHHHH
Q psy9277 64 KPIVKGR--DVIAQAQSGTGKTATF 86 (178)
Q Consensus 64 ~~i~~g~--~v~v~aptGsGKTl~~ 86 (178)
..++.|. .++..|+||||||...
T Consensus 83 ~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 83 DAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhCCCceeEEeecCCCCCCCEEe
Confidence 3445676 5688899999999875
No 358
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=81.62 E-value=1.3 Score=35.41 Aligned_cols=23 Identities=30% Similarity=0.550 Sum_probs=17.5
Q ss_pred HHHHcCCc--EEEEcCCCChHHHHH
Q psy9277 64 KPIVKGRD--VIAQAQSGTGKTATF 86 (178)
Q Consensus 64 ~~i~~g~~--v~v~aptGsGKTl~~ 86 (178)
..++.|.| ++..|+||||||...
T Consensus 78 ~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 78 TDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhCCCceEEEeecCCCCCCceEE
Confidence 34556764 678999999999774
No 359
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=81.61 E-value=1.3 Score=35.06 Aligned_cols=23 Identities=39% Similarity=0.602 Sum_probs=17.5
Q ss_pred HHHHcCCc--EEEEcCCCChHHHHH
Q psy9277 64 KPIVKGRD--VIAQAQSGTGKTATF 86 (178)
Q Consensus 64 ~~i~~g~~--v~v~aptGsGKTl~~ 86 (178)
..++.|.| ++..|+||||||...
T Consensus 77 ~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 77 EAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHhhcCeeEEEecccCCCceEee
Confidence 44556764 688899999999774
No 360
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=81.54 E-value=0.74 Score=38.59 Aligned_cols=20 Identities=30% Similarity=0.361 Sum_probs=17.0
Q ss_pred cCCcEEEEcCCCChHHHHHH
Q psy9277 68 KGRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 68 ~g~~v~v~aptGsGKTl~~l 87 (178)
.|..+++.||+|+|||...-
T Consensus 107 ~g~~vll~Gp~GtGKTtlar 126 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAK 126 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 37789999999999997653
No 361
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=81.50 E-value=0.67 Score=34.87 Aligned_cols=20 Identities=25% Similarity=0.424 Sum_probs=16.8
Q ss_pred HcCCcEEEEcCCCChHHHHH
Q psy9277 67 VKGRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 67 ~~g~~v~v~aptGsGKTl~~ 86 (178)
..|.-+.+.||+|||||...
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl 50 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLI 50 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHH
T ss_pred eCCCEEEEECCCCCCHHHHH
Confidence 34788999999999999654
No 362
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=81.49 E-value=1.2 Score=35.61 Aligned_cols=23 Identities=39% Similarity=0.631 Sum_probs=17.4
Q ss_pred HHHHcCC--cEEEEcCCCChHHHHH
Q psy9277 64 KPIVKGR--DVIAQAQSGTGKTATF 86 (178)
Q Consensus 64 ~~i~~g~--~v~v~aptGsGKTl~~ 86 (178)
..++.|. .++..|+||||||...
T Consensus 95 ~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 95 DSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHhCCCeeeEEeecCCCCCCCEeE
Confidence 3455676 4678899999999774
No 363
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=81.47 E-value=1.2 Score=36.39 Aligned_cols=54 Identities=7% Similarity=-0.022 Sum_probs=38.9
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccHHHHHHHhc-CCCcEEEeCh
Q psy9277 100 ETQVLCLSPTRELAVQIQKVVLALGDFMNVQCHACIGGTNLSEDLRKLD-YGQHVVSGTP 158 (178)
Q Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~IlV~TP 158 (178)
+.++||.+|++.-+..+++.++.. ++.+..+++..... ...... ...+|||+|-
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~----g~~v~~lh~~~R~~-~~~~f~~g~~~iLVaT~ 244 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRA----GKKVIQLNRKSYDT-EYPKCKNGDWDFVITTD 244 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEEESTTCCCC-CGGGSSSCCCSEEEESS
T ss_pred CCCEEEEeCChHHHHHHHHHHHhc----CCcEEecCHHHHHH-HHhhccCCCceEEEECC
Confidence 458999999999999999988765 67788887753322 112222 3468999994
No 364
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=81.44 E-value=0.8 Score=33.58 Aligned_cols=19 Identities=21% Similarity=0.352 Sum_probs=16.2
Q ss_pred CCcEEEEcCCCChHHHHHH
Q psy9277 69 GRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 69 g~~v~v~aptGsGKTl~~l 87 (178)
+..+++.|++|||||...-
T Consensus 16 ~~~I~l~G~~GsGKsT~a~ 34 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAP 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 5689999999999997653
No 365
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=81.39 E-value=0.76 Score=32.71 Aligned_cols=16 Identities=19% Similarity=0.256 Sum_probs=14.0
Q ss_pred cEEEEcCCCChHHHHH
Q psy9277 71 DVIAQAQSGTGKTATF 86 (178)
Q Consensus 71 ~v~v~aptGsGKTl~~ 86 (178)
.+.+.|++|||||...
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 5789999999999765
No 366
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=81.36 E-value=1.2 Score=35.39 Aligned_cols=22 Identities=41% Similarity=0.620 Sum_probs=17.0
Q ss_pred HHHcCC--cEEEEcCCCChHHHHH
Q psy9277 65 PIVKGR--DVIAQAQSGTGKTATF 86 (178)
Q Consensus 65 ~i~~g~--~v~v~aptGsGKTl~~ 86 (178)
.++.|. .++..|+||||||...
T Consensus 75 ~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 75 DILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHhCCCcceEEEECCCCCCcceEe
Confidence 445676 4778999999999765
No 367
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=81.26 E-value=0.7 Score=34.40 Aligned_cols=19 Identities=37% Similarity=0.571 Sum_probs=16.4
Q ss_pred cCCcEEEEcCCCChHHHHH
Q psy9277 68 KGRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 68 ~g~~v~v~aptGsGKTl~~ 86 (178)
.|.-+.+.||+|+|||...
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl 49 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTL 49 (240)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4788999999999999654
No 368
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=81.23 E-value=0.83 Score=32.48 Aligned_cols=17 Identities=18% Similarity=0.298 Sum_probs=14.7
Q ss_pred CcEEEEcCCCChHHHHH
Q psy9277 70 RDVIAQAQSGTGKTATF 86 (178)
Q Consensus 70 ~~v~v~aptGsGKTl~~ 86 (178)
+.+++.|+.|||||...
T Consensus 16 ~~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 46899999999999765
No 369
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=81.16 E-value=0.99 Score=35.59 Aligned_cols=22 Identities=18% Similarity=0.028 Sum_probs=17.4
Q ss_pred CCcEEEEcCCCChHHHHHHHHH
Q psy9277 69 GRDVIAQAQSGTGKTATFSISI 90 (178)
Q Consensus 69 g~~v~v~aptGsGKTl~~ll~i 90 (178)
|.-+.+.+|+|+|||......+
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~ 152 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLA 152 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4568999999999998765443
No 370
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=81.14 E-value=1.3 Score=35.26 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=17.8
Q ss_pred HHHHHcCC--cEEEEcCCCChHHHHH
Q psy9277 63 IKPIVKGR--DVIAQAQSGTGKTATF 86 (178)
Q Consensus 63 i~~i~~g~--~v~v~aptGsGKTl~~ 86 (178)
+..++.|. .++..|+||||||...
T Consensus 82 v~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 82 LQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 34456676 4678899999999764
No 371
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=81.13 E-value=1.4 Score=35.66 Aligned_cols=23 Identities=39% Similarity=0.618 Sum_probs=17.6
Q ss_pred HHHHcCC--cEEEEcCCCChHHHHH
Q psy9277 64 KPIVKGR--DVIAQAQSGTGKTATF 86 (178)
Q Consensus 64 ~~i~~g~--~v~v~aptGsGKTl~~ 86 (178)
..++.|. .++..|+||||||...
T Consensus 148 ~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 148 QTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHHhcCCceeEEeecCCCCCCCeEe
Confidence 4456676 4778899999999775
No 372
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=81.12 E-value=0.71 Score=34.88 Aligned_cols=19 Identities=26% Similarity=0.427 Sum_probs=16.2
Q ss_pred cCCcEEEEcCCCChHHHHH
Q psy9277 68 KGRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 68 ~g~~v~v~aptGsGKTl~~ 86 (178)
.|.-+.+.||+|+|||...
T Consensus 31 ~Ge~~~liG~nGsGKSTLl 49 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFL 49 (262)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4788999999999999654
No 373
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=81.12 E-value=0.84 Score=32.60 Aligned_cols=16 Identities=31% Similarity=0.204 Sum_probs=13.8
Q ss_pred cEEEEcCCCChHHHHH
Q psy9277 71 DVIAQAQSGTGKTATF 86 (178)
Q Consensus 71 ~v~v~aptGsGKTl~~ 86 (178)
.+.+.|+.|||||...
T Consensus 4 ~i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999765
No 374
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=81.05 E-value=0.87 Score=33.97 Aligned_cols=20 Identities=20% Similarity=0.253 Sum_probs=16.9
Q ss_pred cCCcEEEEcCCCChHHHHHH
Q psy9277 68 KGRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 68 ~g~~v~v~aptGsGKTl~~l 87 (178)
.|..+.+.||+|||||...-
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k 45 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCK 45 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 46789999999999997763
No 375
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=80.98 E-value=1.3 Score=35.09 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=17.6
Q ss_pred HHHHcCC--cEEEEcCCCChHHHHH
Q psy9277 64 KPIVKGR--DVIAQAQSGTGKTATF 86 (178)
Q Consensus 64 ~~i~~g~--~v~v~aptGsGKTl~~ 86 (178)
..++.|. .++..|+||||||...
T Consensus 71 ~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 71 DSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHcCCccceeeecCCCCCCCeEE
Confidence 4455676 4678999999999775
No 376
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=80.95 E-value=1.5 Score=34.78 Aligned_cols=25 Identities=32% Similarity=0.563 Sum_probs=19.6
Q ss_pred HHHHHHcCCc--EEEEcCCCChHHHHH
Q psy9277 62 SIKPIVKGRD--VIAQAQSGTGKTATF 86 (178)
Q Consensus 62 ~i~~i~~g~~--v~v~aptGsGKTl~~ 86 (178)
.+..++.|.| ++..|+||||||...
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 5566677875 577899999999775
No 377
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=80.94 E-value=1.4 Score=34.63 Aligned_cols=25 Identities=32% Similarity=0.541 Sum_probs=19.6
Q ss_pred HHHHHHcCCc--EEEEcCCCChHHHHH
Q psy9277 62 SIKPIVKGRD--VIAQAQSGTGKTATF 86 (178)
Q Consensus 62 ~i~~i~~g~~--v~v~aptGsGKTl~~ 86 (178)
.+..++.|.| ++..|+||||||...
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 72 LVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 4566678875 678999999999765
No 378
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=80.93 E-value=1.2 Score=38.75 Aligned_cols=19 Identities=26% Similarity=0.366 Sum_probs=16.5
Q ss_pred CCcEEEEcCCCChHHHHHH
Q psy9277 69 GRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 69 g~~v~v~aptGsGKTl~~l 87 (178)
..++++.||+|+|||...-
T Consensus 201 ~~~vLL~G~pGtGKT~la~ 219 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIAE 219 (758)
T ss_dssp SCEEEEESCTTTTTHHHHH
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 5699999999999997653
No 379
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=80.87 E-value=0.88 Score=32.12 Aligned_cols=16 Identities=19% Similarity=0.306 Sum_probs=13.8
Q ss_pred cEEEEcCCCChHHHHH
Q psy9277 71 DVIAQAQSGTGKTATF 86 (178)
Q Consensus 71 ~v~v~aptGsGKTl~~ 86 (178)
.+++.|++|||||...
T Consensus 2 ~I~i~G~~GsGKsT~~ 17 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTIS 17 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 4789999999999765
No 380
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=80.86 E-value=0.6 Score=34.80 Aligned_cols=19 Identities=26% Similarity=0.385 Sum_probs=16.4
Q ss_pred cCCcEEEEcCCCChHHHHH
Q psy9277 68 KGRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 68 ~g~~v~v~aptGsGKTl~~ 86 (178)
.|.-+.+.||+|||||...
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl 45 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIF 45 (243)
T ss_dssp TTEEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4778999999999999664
No 381
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=80.82 E-value=0.73 Score=34.50 Aligned_cols=21 Identities=24% Similarity=0.230 Sum_probs=17.3
Q ss_pred HcCCcEEEEcCCCChHHHHHH
Q psy9277 67 VKGRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 67 ~~g~~v~v~aptGsGKTl~~l 87 (178)
..|.-+.+.||+|+|||...-
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk 47 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGK 47 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 357889999999999997653
No 382
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=80.76 E-value=1.3 Score=35.19 Aligned_cols=24 Identities=38% Similarity=0.657 Sum_probs=17.9
Q ss_pred HHHHHcCCc--EEEEcCCCChHHHHH
Q psy9277 63 IKPIVKGRD--VIAQAQSGTGKTATF 86 (178)
Q Consensus 63 i~~i~~g~~--v~v~aptGsGKTl~~ 86 (178)
+..++.|.| ++..|+||||||...
T Consensus 81 v~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 81 LDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred HHHHhCCCceEEEEeCCCCCCCceEE
Confidence 344566764 678899999999764
No 383
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=80.73 E-value=0.75 Score=34.86 Aligned_cols=19 Identities=21% Similarity=0.282 Sum_probs=16.6
Q ss_pred cCCcEEEEcCCCChHHHHH
Q psy9277 68 KGRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 68 ~g~~v~v~aptGsGKTl~~ 86 (178)
.|.-+.+.||+|+|||...
T Consensus 45 ~Ge~~~l~G~NGsGKSTLl 63 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLS 63 (267)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4788999999999999764
No 384
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=80.68 E-value=1.3 Score=35.09 Aligned_cols=25 Identities=28% Similarity=0.523 Sum_probs=18.7
Q ss_pred HHHHHHcCCc--EEEEcCCCChHHHHH
Q psy9277 62 SIKPIVKGRD--VIAQAQSGTGKTATF 86 (178)
Q Consensus 62 ~i~~i~~g~~--v~v~aptGsGKTl~~ 86 (178)
.+..++.|.| ++..|+||||||...
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 3445567765 678899999999775
No 385
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=80.65 E-value=0.86 Score=34.16 Aligned_cols=19 Identities=21% Similarity=0.153 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCChHHHHHH
Q psy9277 69 GRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 69 g~~v~v~aptGsGKTl~~l 87 (178)
+.-++++|++|||||...-
T Consensus 4 ~~lIvl~G~pGSGKSTla~ 22 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSK 22 (260)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHH
Confidence 3468999999999997653
No 386
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=80.65 E-value=0.92 Score=32.86 Aligned_cols=18 Identities=22% Similarity=0.403 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCChHHHHH
Q psy9277 69 GRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 69 g~~v~v~aptGsGKTl~~ 86 (178)
+..+++.|++|||||...
T Consensus 5 ~~~I~l~G~~GsGKsT~a 22 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQC 22 (217)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 467999999999999765
No 387
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=80.62 E-value=1.4 Score=35.64 Aligned_cols=25 Identities=32% Similarity=0.562 Sum_probs=19.6
Q ss_pred HHHHHHcCCc--EEEEcCCCChHHHHH
Q psy9277 62 SIKPIVKGRD--VIAQAQSGTGKTATF 86 (178)
Q Consensus 62 ~i~~i~~g~~--v~v~aptGsGKTl~~ 86 (178)
.+..++.|.| ++..|+||||||...
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 4566677875 678899999999775
No 388
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=80.62 E-value=0.76 Score=34.91 Aligned_cols=20 Identities=20% Similarity=0.336 Sum_probs=16.8
Q ss_pred HcCCcEEEEcCCCChHHHHH
Q psy9277 67 VKGRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 67 ~~g~~v~v~aptGsGKTl~~ 86 (178)
..|.-+.+.||+|||||...
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLl 62 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVA 62 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 34888999999999999654
No 389
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=80.53 E-value=1.3 Score=35.14 Aligned_cols=23 Identities=35% Similarity=0.624 Sum_probs=17.3
Q ss_pred HHHHcCC--cEEEEcCCCChHHHHH
Q psy9277 64 KPIVKGR--DVIAQAQSGTGKTATF 86 (178)
Q Consensus 64 ~~i~~g~--~v~v~aptGsGKTl~~ 86 (178)
..++.|. .++..|+||||||...
T Consensus 99 ~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 99 RSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHhCCCceEEEEeCCCCCCceeee
Confidence 3445676 4688899999999775
No 390
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=80.46 E-value=1 Score=33.44 Aligned_cols=20 Identities=20% Similarity=0.175 Sum_probs=16.4
Q ss_pred cCCcEEEEcCCCChHHHHHH
Q psy9277 68 KGRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 68 ~g~~v~v~aptGsGKTl~~l 87 (178)
.+..+++.||+|||||...-
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~ 47 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSL 47 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 35679999999999997653
No 391
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=80.38 E-value=1.4 Score=35.04 Aligned_cols=24 Identities=29% Similarity=0.584 Sum_probs=18.0
Q ss_pred HHHHHcCCc--EEEEcCCCChHHHHH
Q psy9277 63 IKPIVKGRD--VIAQAQSGTGKTATF 86 (178)
Q Consensus 63 i~~i~~g~~--v~v~aptGsGKTl~~ 86 (178)
+..++.|.| ++..|+||||||...
T Consensus 96 v~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 96 VSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHhCCCceEEEEECCCCCCCceEe
Confidence 344566765 677899999999775
No 392
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=80.37 E-value=0.79 Score=34.69 Aligned_cols=19 Identities=21% Similarity=0.578 Sum_probs=16.3
Q ss_pred cCCcEEEEcCCCChHHHHH
Q psy9277 68 KGRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 68 ~g~~v~v~aptGsGKTl~~ 86 (178)
.|.-+.+.||+|||||...
T Consensus 32 ~Ge~~~liG~nGsGKSTLl 50 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLL 50 (266)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCcHHHHH
Confidence 4788999999999999654
No 393
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=80.37 E-value=0.89 Score=32.77 Aligned_cols=17 Identities=18% Similarity=0.182 Sum_probs=14.3
Q ss_pred cEEEEcCCCChHHHHHH
Q psy9277 71 DVIAQAQSGTGKTATFS 87 (178)
Q Consensus 71 ~v~v~aptGsGKTl~~l 87 (178)
.+++.|++|||||...-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQ 18 (214)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 48899999999997653
No 394
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=80.34 E-value=0.77 Score=34.47 Aligned_cols=19 Identities=21% Similarity=0.365 Sum_probs=16.4
Q ss_pred cCCcEEEEcCCCChHHHHH
Q psy9277 68 KGRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 68 ~g~~v~v~aptGsGKTl~~ 86 (178)
.|.-+.+.||+|+|||...
T Consensus 25 ~Ge~~~liG~NGsGKSTLl 43 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLL 43 (249)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCcHHHHH
Confidence 4788999999999999654
No 395
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=80.25 E-value=1.5 Score=35.32 Aligned_cols=23 Identities=39% Similarity=0.618 Sum_probs=17.7
Q ss_pred HHHHcCC--cEEEEcCCCChHHHHH
Q psy9277 64 KPIVKGR--DVIAQAQSGTGKTATF 86 (178)
Q Consensus 64 ~~i~~g~--~v~v~aptGsGKTl~~ 86 (178)
..++.|. .++..|+||||||...
T Consensus 128 ~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 128 QTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHHhcCCceEEEEecCCCCCCCeEe
Confidence 4456676 4788899999999775
No 396
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=80.23 E-value=1.4 Score=36.29 Aligned_cols=41 Identities=15% Similarity=-0.013 Sum_probs=27.8
Q ss_pred HHcCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcC
Q psy9277 66 IVKGRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSP 108 (178)
Q Consensus 66 i~~g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~P 108 (178)
+..|.-+++.|++|+|||...+--+.+.... .+..++|++-
T Consensus 239 l~~G~l~li~G~pG~GKT~lal~~a~~~a~~--~g~~vl~~s~ 279 (503)
T 1q57_A 239 ARGGEVIMVTSGSGMVMSTFVRQQALQWGTA--MGKKVGLAML 279 (503)
T ss_dssp CCTTCEEEEEESSCHHHHHHHHHHHHHHTTT--SCCCEEEEES
T ss_pred cCCCeEEEEeecCCCCchHHHHHHHHHHHHh--cCCcEEEEec
Confidence 4457789999999999997765554443321 1446777764
No 397
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=80.21 E-value=0.64 Score=32.37 Aligned_cols=20 Identities=25% Similarity=0.255 Sum_probs=12.0
Q ss_pred cCCcEEEEcCCCChHHHHHH
Q psy9277 68 KGRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 68 ~g~~v~v~aptGsGKTl~~l 87 (178)
.+.-+++.|+.|||||...-
T Consensus 4 ~~~~I~l~G~~GsGKST~a~ 23 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAH 23 (183)
T ss_dssp -CCEEEEECCC----CHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 35679999999999997653
No 398
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=80.18 E-value=1.2 Score=35.52 Aligned_cols=25 Identities=36% Similarity=0.589 Sum_probs=19.2
Q ss_pred HHHHHHcCCc--EEEEcCCCChHHHHH
Q psy9277 62 SIKPIVKGRD--VIAQAQSGTGKTATF 86 (178)
Q Consensus 62 ~i~~i~~g~~--v~v~aptGsGKTl~~ 86 (178)
.+..++.|.| ++..|+||||||...
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 4556677875 677899999999775
No 399
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=80.18 E-value=0.8 Score=34.52 Aligned_cols=19 Identities=32% Similarity=0.400 Sum_probs=16.4
Q ss_pred cCCcEEEEcCCCChHHHHH
Q psy9277 68 KGRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 68 ~g~~v~v~aptGsGKTl~~ 86 (178)
.|.-+.+.||+|+|||...
T Consensus 40 ~Gei~~l~G~NGsGKSTLl 58 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTL 58 (256)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4788999999999999654
No 400
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=80.11 E-value=0.81 Score=34.67 Aligned_cols=19 Identities=32% Similarity=0.567 Sum_probs=16.3
Q ss_pred cCCcEEEEcCCCChHHHHH
Q psy9277 68 KGRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 68 ~g~~v~v~aptGsGKTl~~ 86 (178)
.|.-+.+.||+|+|||...
T Consensus 49 ~Gei~~liG~NGsGKSTLl 67 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFL 67 (263)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEEcCCCCcHHHHH
Confidence 4788999999999999654
No 401
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=80.09 E-value=0.74 Score=32.04 Aligned_cols=20 Identities=30% Similarity=0.243 Sum_probs=16.5
Q ss_pred HcCCcEEEEcCCCChHHHHH
Q psy9277 67 VKGRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 67 ~~g~~v~v~aptGsGKTl~~ 86 (178)
..|.-+.+.+|.|+|||...
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLl 50 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLT 50 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 45778899999999999654
No 402
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=80.08 E-value=2.3 Score=33.00 Aligned_cols=17 Identities=35% Similarity=0.524 Sum_probs=14.7
Q ss_pred cEEEEcCCCChHHHHHH
Q psy9277 71 DVIAQAQSGTGKTATFS 87 (178)
Q Consensus 71 ~v~v~aptGsGKTl~~l 87 (178)
++++.||+|+|||....
T Consensus 48 ~~ll~Gp~G~GKTtla~ 64 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIV 64 (340)
T ss_dssp CEEEECSSSSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 49999999999997754
No 403
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=79.99 E-value=3.2 Score=29.23 Aligned_cols=16 Identities=19% Similarity=0.073 Sum_probs=13.1
Q ss_pred cEEEEcCCCChHHHHH
Q psy9277 71 DVIAQAQSGTGKTATF 86 (178)
Q Consensus 71 ~v~v~aptGsGKTl~~ 86 (178)
-+.+.+++|||||...
T Consensus 6 ~i~i~G~sGsGKTTl~ 21 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLM 21 (169)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778999999999653
No 404
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=79.97 E-value=1.3 Score=35.89 Aligned_cols=25 Identities=36% Similarity=0.589 Sum_probs=19.5
Q ss_pred HHHHHHcCCc--EEEEcCCCChHHHHH
Q psy9277 62 SIKPIVKGRD--VIAQAQSGTGKTATF 86 (178)
Q Consensus 62 ~i~~i~~g~~--v~v~aptGsGKTl~~ 86 (178)
.+..++.|.| ++..|+||||||...
T Consensus 130 lv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 130 LIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 4566677775 678899999999775
No 405
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=79.83 E-value=0.86 Score=36.11 Aligned_cols=16 Identities=31% Similarity=0.544 Sum_probs=13.7
Q ss_pred cEEEEcCCCChHHHHH
Q psy9277 71 DVIAQAQSGTGKTATF 86 (178)
Q Consensus 71 ~v~v~aptGsGKTl~~ 86 (178)
-.+++|+||+|||..+
T Consensus 27 l~vi~G~NGaGKT~il 42 (371)
T 3auy_A 27 IVAIIGENGSGKSSIF 42 (371)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4689999999999774
No 406
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=79.76 E-value=1.5 Score=34.62 Aligned_cols=25 Identities=32% Similarity=0.562 Sum_probs=19.2
Q ss_pred HHHHHHcCCc--EEEEcCCCChHHHHH
Q psy9277 62 SIKPIVKGRD--VIAQAQSGTGKTATF 86 (178)
Q Consensus 62 ~i~~i~~g~~--v~v~aptGsGKTl~~ 86 (178)
.+..++.|.| ++..|+||||||...
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEec
Confidence 4455667765 678899999999775
No 407
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=79.74 E-value=0.81 Score=34.40 Aligned_cols=19 Identities=32% Similarity=0.492 Sum_probs=16.3
Q ss_pred cCCcEEEEcCCCChHHHHH
Q psy9277 68 KGRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 68 ~g~~v~v~aptGsGKTl~~ 86 (178)
.|.-+.+.||+|+|||...
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl 48 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLL 48 (253)
T ss_dssp TTCEEEEECCSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4788999999999999654
No 408
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=79.64 E-value=0.83 Score=34.91 Aligned_cols=19 Identities=37% Similarity=0.511 Sum_probs=16.4
Q ss_pred cCCcEEEEcCCCChHHHHH
Q psy9277 68 KGRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 68 ~g~~v~v~aptGsGKTl~~ 86 (178)
.|.-+.+.||+|+|||...
T Consensus 46 ~Ge~~~liG~NGsGKSTLl 64 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLL 64 (279)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCcHHHHH
Confidence 4788999999999999654
No 409
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=79.56 E-value=1.1 Score=34.78 Aligned_cols=18 Identities=44% Similarity=0.669 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCChHHHHH
Q psy9277 69 GRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 69 g~~v~v~aptGsGKTl~~ 86 (178)
|.-+.+.||+|+|||...
T Consensus 102 g~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SSEEEEECSTTSSHHHHH
T ss_pred CeEEEEECCCCCcHHHHH
Confidence 567889999999999764
No 410
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=79.47 E-value=1 Score=31.46 Aligned_cols=16 Identities=25% Similarity=0.324 Sum_probs=13.7
Q ss_pred cEEEEcCCCChHHHHH
Q psy9277 71 DVIAQAQSGTGKTATF 86 (178)
Q Consensus 71 ~v~v~aptGsGKTl~~ 86 (178)
.+++.|+.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~~ 17 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQA 17 (195)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999765
No 411
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=79.41 E-value=1.4 Score=35.20 Aligned_cols=23 Identities=43% Similarity=0.663 Sum_probs=17.2
Q ss_pred HHHHcCC--cEEEEcCCCChHHHHH
Q psy9277 64 KPIVKGR--DVIAQAQSGTGKTATF 86 (178)
Q Consensus 64 ~~i~~g~--~v~v~aptGsGKTl~~ 86 (178)
..++.|. .++..|+||||||...
T Consensus 94 ~~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 94 EEVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhCCceEEEEeecCCCCCcceec
Confidence 3445676 4788899999999764
No 412
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=79.18 E-value=0.39 Score=39.17 Aligned_cols=55 Identities=15% Similarity=0.076 Sum_probs=0.0
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccHHHHHHHhc----CCCcEEEeCh
Q psy9277 100 ETQVLCLSPTRELAVQIQKVVLALGDFMNVQCHACIGGTNLSEDLRKLD----YGQHVVSGTP 158 (178)
Q Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~IlV~TP 158 (178)
..+++|.|+++.-+..+++.+... +..+..++|+.+..++...+. ...+|||+|.
T Consensus 333 ~~~~lvF~~s~~~~~~l~~~L~~~----~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~ 391 (479)
T 3fmp_B 333 IAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN 391 (479)
T ss_dssp ---------------------------------------------------------------
T ss_pred CCceEEEeCcHHHHHHHHHHHHhC----CccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcc
Confidence 357899999999999888887654 677888888887665544432 2468999994
No 413
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=79.17 E-value=0.81 Score=35.53 Aligned_cols=19 Identities=26% Similarity=0.506 Sum_probs=16.6
Q ss_pred cCCcEEEEcCCCChHHHHH
Q psy9277 68 KGRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 68 ~g~~v~v~aptGsGKTl~~ 86 (178)
.|.-+.+.||+|||||...
T Consensus 79 ~Ge~vaivG~sGsGKSTLl 97 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTIL 97 (306)
T ss_dssp TTCEEEEESSSCHHHHHHH
T ss_pred CCCEEEEECCCCchHHHHH
Confidence 4889999999999999664
No 414
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=79.03 E-value=0.86 Score=40.15 Aligned_cols=19 Identities=32% Similarity=0.415 Sum_probs=16.6
Q ss_pred cCCcEEEEcCCCChHHHHH
Q psy9277 68 KGRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 68 ~g~~v~v~aptGsGKTl~~ 86 (178)
.++.++++||+|+|||...
T Consensus 237 ~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CCCEEEECSCTTSSHHHHH
T ss_pred CCCeEEEECcCCCCHHHHH
Confidence 3689999999999999765
No 415
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=78.96 E-value=0.97 Score=37.59 Aligned_cols=51 Identities=16% Similarity=0.071 Sum_probs=31.1
Q ss_pred cccccccCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHc------CCcEEEEcCCCChHHHHHH
Q psy9277 30 VVSTFDNMGLREDLLRGIYAYGFEKPSAIQQRSIKPIVK------GRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 30 ~~~~f~~~~l~~~i~~~l~~~g~~~~~~~Q~~~i~~i~~------g~~v~v~aptGsGKTl~~l 87 (178)
+..+|+++.-.++....+++.-. ...-+..+. .+.+++.+|+|+|||...-
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~-------~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLar 82 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVE-------FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLAR 82 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHH-------HHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHH
T ss_pred CCCCHHHcCCcHHHHHHHHHHHH-------HhhchhhhhhccCCCCceEEEECCCCCCHHHHHH
Confidence 56688888766666666653210 000011221 3569999999999997653
No 416
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=78.92 E-value=0.65 Score=34.65 Aligned_cols=18 Identities=33% Similarity=0.449 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCChHHHHH
Q psy9277 69 GRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 69 g~~v~v~aptGsGKTl~~ 86 (178)
+..++++|++|||||...
T Consensus 32 ~~~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIH 49 (253)
T ss_dssp CEEEEEESCGGGTTHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 457999999999999765
No 417
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=78.77 E-value=1.1 Score=31.42 Aligned_cols=16 Identities=19% Similarity=0.463 Sum_probs=13.7
Q ss_pred EEEEcCCCChHHHHHH
Q psy9277 72 VIAQAQSGTGKTATFS 87 (178)
Q Consensus 72 v~v~aptGsGKTl~~l 87 (178)
+++.|+.|||||...-
T Consensus 3 I~l~G~~GsGKsT~~~ 18 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQ 18 (197)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 7899999999997653
No 418
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=78.51 E-value=1.1 Score=32.10 Aligned_cols=18 Identities=22% Similarity=0.043 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCChHHHHH
Q psy9277 69 GRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 69 g~~v~v~aptGsGKTl~~ 86 (178)
+.-+.+.|++|||||...
T Consensus 22 ~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp SEEEEEEECTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456899999999999765
No 419
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=78.48 E-value=1.4 Score=35.52 Aligned_cols=32 Identities=31% Similarity=0.506 Sum_probs=21.9
Q ss_pred CcHHHHHHHH--------HHHcCCc--EEEEcCCCChHHHHH
Q psy9277 55 PSAIQQRSIK--------PIVKGRD--VIAQAQSGTGKTATF 86 (178)
Q Consensus 55 ~~~~Q~~~i~--------~i~~g~~--v~v~aptGsGKTl~~ 86 (178)
+..-|.+++. .++.|.| ++..|+||||||...
T Consensus 75 ~~~tQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 75 ERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp TTCCHHHHHHHHTGGGHHHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred CCCCHhHHHHHHHHHHHHHhhcCceeeEeeecCCCCCCCeEe
Confidence 3445666554 3445664 678899999999765
No 420
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=78.36 E-value=1.8 Score=35.45 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=17.5
Q ss_pred HHHHcCCc--EEEEcCCCChHHHHH
Q psy9277 64 KPIVKGRD--VIAQAQSGTGKTATF 86 (178)
Q Consensus 64 ~~i~~g~~--v~v~aptGsGKTl~~ 86 (178)
..++.|.| ++..|+||||||...
T Consensus 130 ~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 130 DHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHhhcCCceEEEEeCCCCCCCCEEe
Confidence 34456764 788899999999775
No 421
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=78.33 E-value=3.4 Score=37.10 Aligned_cols=57 Identities=18% Similarity=0.207 Sum_probs=43.3
Q ss_pred CCCceEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccHHHHHHHh---cCC---CcEEEeC
Q psy9277 98 LRETQVLCLSPTRELAVQIQKVVLALGDFMNVQCHACIGGTNLSEDLRKL---DYG---QHVVSGT 157 (178)
Q Consensus 98 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~---~~IlV~T 157 (178)
..+.++||.|+++.-+..+...+.. ..|+++..++|+++..++...+ .++ ++|+|+|
T Consensus 501 ~~~~k~iVF~~~~~~~~~l~~~L~~---~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT 563 (968)
T 3dmq_A 501 HRSQKVLVICAKAATALQLEQVLRE---REGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCS 563 (968)
T ss_dssp TSSSCCCEECSSTHHHHHHHHHHHT---TTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECS
T ss_pred CCCCCEEEEeCcHHHHHHHHHHHHH---HcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEec
Confidence 3567999999999999988887763 2378899999998765554433 233 8999999
No 422
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=78.12 E-value=1.1 Score=31.60 Aligned_cols=18 Identities=17% Similarity=0.183 Sum_probs=14.9
Q ss_pred CcEEEEcCCCChHHHHHH
Q psy9277 70 RDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 70 ~~v~v~aptGsGKTl~~l 87 (178)
..+.+.+++|||||...-
T Consensus 9 ~~I~i~G~~GsGKST~~~ 26 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAA 26 (203)
T ss_dssp EEEEEEECTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 358899999999997753
No 423
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=77.94 E-value=3 Score=32.29 Aligned_cols=18 Identities=28% Similarity=0.392 Sum_probs=14.8
Q ss_pred CcEEEEcCCCChHHHHHH
Q psy9277 70 RDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 70 ~~v~v~aptGsGKTl~~l 87 (178)
+-+++.+++|+|||....
T Consensus 105 ~vi~ivG~~GsGKTTl~~ 122 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCG 122 (306)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred eEEEEEcCCCChHHHHHH
Confidence 457899999999997654
No 424
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=77.76 E-value=1.2 Score=32.37 Aligned_cols=17 Identities=18% Similarity=0.374 Sum_probs=14.2
Q ss_pred cEEEEcCCCChHHHHHH
Q psy9277 71 DVIAQAQSGTGKTATFS 87 (178)
Q Consensus 71 ~v~v~aptGsGKTl~~l 87 (178)
.+++.|++|||||...-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGN 18 (223)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999997653
No 425
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=77.75 E-value=1.1 Score=39.54 Aligned_cols=19 Identities=32% Similarity=0.422 Sum_probs=16.2
Q ss_pred CCcEEEEcCCCChHHHHHH
Q psy9277 69 GRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 69 g~~v~v~aptGsGKTl~~l 87 (178)
.+.+++.||+|+|||+..-
T Consensus 238 p~GILL~GPPGTGKT~LAr 256 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIAR 256 (806)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 3689999999999997653
No 426
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=77.60 E-value=3.5 Score=31.19 Aligned_cols=52 Identities=15% Similarity=0.159 Sum_probs=38.0
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccHHHHHHHhc----CCCcEEEeCh
Q psy9277 99 RETQVLCLSPTRELAVQIQKVVLALGDFMNVQCHACIGGTNLSEDLRKLD----YGQHVVSGTP 158 (178)
Q Consensus 99 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~IlV~TP 158 (178)
.+.++||.+++++.+..+++.+. .+..++|+.+..++...+. ...+|+|+|.
T Consensus 219 ~~~~~lvf~~~~~~~~~l~~~l~--------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~ 274 (337)
T 2z0m_A 219 KDKGVIVFVRTRNRVAKLVRLFD--------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTD 274 (337)
T ss_dssp CCSSEEEECSCHHHHHHHHTTCT--------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECH
T ss_pred CCCcEEEEEcCHHHHHHHHHHhh--------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcC
Confidence 45689999999999887776554 4567788887766554443 3478999994
No 427
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=77.55 E-value=1 Score=34.64 Aligned_cols=19 Identities=26% Similarity=0.548 Sum_probs=16.4
Q ss_pred cCCcEEEEcCCCChHHHHH
Q psy9277 68 KGRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 68 ~g~~v~v~aptGsGKTl~~ 86 (178)
.|.-+.+.||+|+|||...
T Consensus 63 ~Ge~~~i~G~NGsGKSTLl 81 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLL 81 (290)
T ss_dssp TTCEEEEEESTTSSHHHHH
T ss_pred CCCEEEEECCCCCcHHHHH
Confidence 4788999999999999664
No 428
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=77.45 E-value=6.1 Score=35.04 Aligned_cols=55 Identities=15% Similarity=-0.000 Sum_probs=40.1
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccHHHHHHHhcC--CCcEEEeCh
Q psy9277 100 ETQVLCLSPTRELAVQIQKVVLALGDFMNVQCHACIGGTNLSEDLRKLDY--GQHVVSGTP 158 (178)
Q Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~IlV~TP 158 (178)
+..+||.|.|++-+..+.+.+... |+.+..++|+....+....... ...|+|+|-
T Consensus 432 ~~pvLVft~s~~~se~Ls~~L~~~----gi~~~vLhg~~~~rEr~ii~~ag~~g~VlIATd 488 (844)
T 1tf5_A 432 GQPVLVGTVAVETSELISKLLKNK----GIPHQVLNAKNHEREAQIIEEAGQKGAVTIATN 488 (844)
T ss_dssp TCCEEEEESCHHHHHHHHHHHHTT----TCCCEEECSSCHHHHHHHHTTTTSTTCEEEEET
T ss_pred CCcEEEEECCHHHHHHHHHHHHHC----CCCEEEeeCCccHHHHHHHHHcCCCCeEEEeCC
Confidence 346999999999999988877644 7888889988765554322222 257999993
No 429
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=77.37 E-value=1.8 Score=37.59 Aligned_cols=19 Identities=32% Similarity=0.400 Sum_probs=16.6
Q ss_pred CCcEEEEcCCCChHHHHHH
Q psy9277 69 GRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 69 g~~v~v~aptGsGKTl~~l 87 (178)
+.++++.||+|+|||...-
T Consensus 207 ~~~vlL~G~~GtGKT~la~ 225 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIAE 225 (758)
T ss_dssp SCEEEEECCTTSSHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHH
Confidence 5799999999999997653
No 430
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=77.33 E-value=1.6 Score=34.90 Aligned_cols=24 Identities=33% Similarity=0.588 Sum_probs=18.0
Q ss_pred HHHHHcCCc--EEEEcCCCChHHHHH
Q psy9277 63 IKPIVKGRD--VIAQAQSGTGKTATF 86 (178)
Q Consensus 63 i~~i~~g~~--v~v~aptGsGKTl~~ 86 (178)
+..++.|.| ++..|+||||||...
T Consensus 108 v~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 108 VQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhcCCCceEEEEeCCCCCCCceEe
Confidence 345556764 678899999999765
No 431
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=77.22 E-value=1.3 Score=31.92 Aligned_cols=16 Identities=25% Similarity=0.405 Sum_probs=13.6
Q ss_pred cEEEEcCCCChHHHHH
Q psy9277 71 DVIAQAQSGTGKTATF 86 (178)
Q Consensus 71 ~v~v~aptGsGKTl~~ 86 (178)
-.++.||+|+|||..+
T Consensus 25 ~~~I~G~NgsGKStil 40 (203)
T 3qks_A 25 INLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEEcCCCCCHHHHH
Confidence 5688999999999774
No 432
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=77.22 E-value=20 Score=26.71 Aligned_cols=81 Identities=15% Similarity=0.218 Sum_probs=52.7
Q ss_pred HcCCcEEEEcC-CCChHHHHHHHHHHHHhhhcCCCceEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccHHHHHH
Q psy9277 67 VKGRDVIAQAQ-SGTGKTATFSISILQSLDTQLRETQVLCLSPTRELAVQIQKVVLALGDFMNVQCHACIGGTNLSEDLR 145 (178)
Q Consensus 67 ~~g~~v~v~ap-tGsGKTl~~ll~il~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 145 (178)
++||-++|.+. .|-|+..+-.+ .. .+.++++..-..+-+.+..+.++.. +.++..+..+....+...
T Consensus 5 L~gKvalVTGas~GIG~aiA~~l------a~--~Ga~Vv~~~~~~~~~~~~~~~i~~~----g~~~~~~~~Dvt~~~~v~ 72 (254)
T 4fn4_A 5 LKNKVVIVTGAGSGIGRAIAKKF------AL--NDSIVVAVELLEDRLNQIVQELRGM----GKEVLGVKADVSKKKDVE 72 (254)
T ss_dssp GTTCEEEEETTTSHHHHHHHHHH------HH--TTCEEEEEESCHHHHHHHHHHHHHT----TCCEEEEECCTTSHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHH------HH--cCCEEEEEECCHHHHHHHHHHHHhc----CCcEEEEEccCCCHHHHH
Confidence 57888888876 44676654332 22 5667888777788888888877665 455666666665444433
Q ss_pred Hh-------cCCCcEEEeChH
Q psy9277 146 KL-------DYGQHVVSGTPG 159 (178)
Q Consensus 146 ~~-------~~~~~IlV~TP~ 159 (178)
.+ ..+.||+|...+
T Consensus 73 ~~~~~~~~~~G~iDiLVNNAG 93 (254)
T 4fn4_A 73 EFVRRTFETYSRIDVLCNNAG 93 (254)
T ss_dssp HHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHcCCCCEEEECCc
Confidence 32 246799997665
No 433
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=77.00 E-value=1.2 Score=34.48 Aligned_cols=19 Identities=21% Similarity=0.359 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCChHHHHHH
Q psy9277 69 GRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 69 g~~v~v~aptGsGKTl~~l 87 (178)
|.-+.+.||+|+|||...-
T Consensus 100 g~vi~lvG~nGsGKTTll~ 118 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLG 118 (302)
T ss_dssp CEEEEEECCTTSCHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 4568899999999997653
No 434
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=76.95 E-value=1.1 Score=33.20 Aligned_cols=20 Identities=10% Similarity=0.120 Sum_probs=16.2
Q ss_pred cCCcEEEEcCCCChHHHHHH
Q psy9277 68 KGRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 68 ~g~~v~v~aptGsGKTl~~l 87 (178)
.|.-+.+.||+|||||...-
T Consensus 24 ~g~iigI~G~~GsGKSTl~k 43 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCE 43 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 35568899999999997753
No 435
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=76.85 E-value=2.6 Score=32.71 Aligned_cols=17 Identities=24% Similarity=0.325 Sum_probs=14.6
Q ss_pred cEEEEcCCCChHHHHHH
Q psy9277 71 DVIAQAQSGTGKTATFS 87 (178)
Q Consensus 71 ~v~v~aptGsGKTl~~l 87 (178)
.+++.||+|+|||...-
T Consensus 40 ~~ll~G~~G~GKT~la~ 56 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIAR 56 (373)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999997753
No 436
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=76.80 E-value=1.3 Score=31.83 Aligned_cols=19 Identities=21% Similarity=0.197 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCChHHHHHH
Q psy9277 69 GRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 69 g~~v~v~aptGsGKTl~~l 87 (178)
+.-+.+.|+.|||||...-
T Consensus 4 ~~~I~i~G~~GSGKST~~~ 22 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVAN 22 (218)
T ss_dssp CEEEEEECCTTSCHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3468999999999997653
No 437
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=76.71 E-value=0.51 Score=36.97 Aligned_cols=56 Identities=13% Similarity=0.050 Sum_probs=0.0
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccHHHHHHHhc----CCCcEEEeCh
Q psy9277 99 RETQVLCLSPTRELAVQIQKVVLALGDFMNVQCHACIGGTNLSEDLRKLD----YGQHVVSGTP 158 (178)
Q Consensus 99 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~IlV~TP 158 (178)
...++||.+++++-+..+++.++.. ++.+..++|+.+..++...+. ...+|+|+|.
T Consensus 258 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~ 317 (394)
T 1fuu_A 258 SVTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD 317 (394)
T ss_dssp ----------------------------------------------------------------
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHc----CCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECC
Confidence 3458999999999999888877654 677788888877665544332 2457999884
No 438
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=76.61 E-value=1.3 Score=33.55 Aligned_cols=17 Identities=18% Similarity=0.263 Sum_probs=14.4
Q ss_pred cEEEEcCCCChHHHHHH
Q psy9277 71 DVIAQAQSGTGKTATFS 87 (178)
Q Consensus 71 ~v~v~aptGsGKTl~~l 87 (178)
-+++.|++|||||...-
T Consensus 4 ~I~l~G~~GsGKST~a~ 20 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAR 20 (301)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999997653
No 439
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=76.59 E-value=1.6 Score=31.26 Aligned_cols=20 Identities=15% Similarity=0.192 Sum_probs=16.9
Q ss_pred cCCcEEEEcCCCChHHHHHH
Q psy9277 68 KGRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 68 ~g~~v~v~aptGsGKTl~~l 87 (178)
.|+.+++.+++|+|||...+
T Consensus 15 ~G~gvli~G~SGaGKStlal 34 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSL 34 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHH
Confidence 37889999999999996654
No 440
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=76.54 E-value=2.1 Score=37.24 Aligned_cols=17 Identities=29% Similarity=0.346 Sum_probs=15.1
Q ss_pred cEEEEcCCCChHHHHHH
Q psy9277 71 DVIAQAQSGTGKTATFS 87 (178)
Q Consensus 71 ~v~v~aptGsGKTl~~l 87 (178)
++++.||||+|||..+-
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ 539 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELAR 539 (758)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999998764
No 441
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=76.50 E-value=14 Score=30.72 Aligned_cols=35 Identities=17% Similarity=0.146 Sum_probs=22.3
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcC
Q psy9277 71 DVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSP 108 (178)
Q Consensus 71 ~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~P 108 (178)
.+++++++|+|||....--+ ..+.. .+.+++++..
T Consensus 103 vI~ivG~~GvGKTTl~~kLA-~~l~~--~G~kVllVd~ 137 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLA-YYYQR--KGWKTCLICA 137 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHH-HHHHH--TTCCEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHH-HHHHh--CCCeEEEEec
Confidence 58899999999997754322 22332 2446666654
No 442
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=76.49 E-value=3.4 Score=32.11 Aligned_cols=36 Identities=19% Similarity=0.111 Sum_probs=21.6
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEc
Q psy9277 69 GRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLS 107 (178)
Q Consensus 69 g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~ 107 (178)
++-+++.+++|+|||.....-+. .+.. .+.+++++.
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~-~l~~--~g~kVllid 140 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMAN-YYAE--LGYKVLIAA 140 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHH-HHHH--TTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-HHHH--CCCeEEEEe
Confidence 34588999999999976543221 2222 344666554
No 443
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=76.44 E-value=1.1 Score=31.63 Aligned_cols=17 Identities=24% Similarity=0.243 Sum_probs=13.8
Q ss_pred cEEEEcCCCChHHHHHH
Q psy9277 71 DVIAQAQSGTGKTATFS 87 (178)
Q Consensus 71 ~v~v~aptGsGKTl~~l 87 (178)
-+.+.+++|||||...-
T Consensus 4 ~v~IvG~SGsGKSTL~~ 20 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLIT 20 (171)
T ss_dssp EEEEEESCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46789999999997653
No 444
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=76.01 E-value=3.2 Score=40.32 Aligned_cols=37 Identities=19% Similarity=0.127 Sum_probs=27.2
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEc
Q psy9277 68 KGRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLS 107 (178)
Q Consensus 68 ~g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~ 107 (178)
.|+++++++|+|+|||.....-+.+... .+.+++|+.
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea~k---~Ge~~~Fit 1116 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFID 1116 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHT---TTCCEEEEC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH---cCCeEEEEE
Confidence 5789999999999999887665555433 345666665
No 445
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=76.00 E-value=7 Score=33.52 Aligned_cols=60 Identities=17% Similarity=0.154 Sum_probs=44.2
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHhccC--------------------------------CCceEEEEEcCccHHHHHHH
Q psy9277 99 RETQVLCLSPTRELAVQIQKVVLALGDF--------------------------------MNVQCHACIGGTNLSEDLRK 146 (178)
Q Consensus 99 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~--------------------------------~~~~~~~~~g~~~~~~~~~~ 146 (178)
.+.++||.+|++.-+..+++.+.+.... ....+..++|+.+.+++...
T Consensus 251 ~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v 330 (715)
T 2va8_A 251 KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLI 330 (715)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHH
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHH
Confidence 4568999999999999999988765322 01247788999888766554
Q ss_pred hc----CCCcEEEeCh
Q psy9277 147 LD----YGQHVVSGTP 158 (178)
Q Consensus 147 ~~----~~~~IlV~TP 158 (178)
.. ....|+|+|.
T Consensus 331 ~~~f~~g~~~vlvaT~ 346 (715)
T 2va8_A 331 EEGFRQRKIKVIVATP 346 (715)
T ss_dssp HHHHHTTCSCEEEECG
T ss_pred HHHHHcCCCeEEEECh
Confidence 43 3468999994
No 446
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=75.99 E-value=1.4 Score=33.80 Aligned_cols=17 Identities=24% Similarity=0.249 Sum_probs=14.3
Q ss_pred CcEEEEcCCCChHHHHH
Q psy9277 70 RDVIAQAQSGTGKTATF 86 (178)
Q Consensus 70 ~~v~v~aptGsGKTl~~ 86 (178)
.-+.|.|++|||||...
T Consensus 32 ~ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTS 48 (290)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45789999999999765
No 447
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=75.95 E-value=1.2 Score=35.47 Aligned_cols=19 Identities=32% Similarity=0.438 Sum_probs=16.2
Q ss_pred cCCcEEEEcCCCChHHHHH
Q psy9277 68 KGRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 68 ~g~~v~v~aptGsGKTl~~ 86 (178)
.|.-+.+.||+|||||...
T Consensus 29 ~Ge~~~llGpsGsGKSTLL 47 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLL 47 (359)
T ss_dssp TTCEEEEEESTTSSHHHHH
T ss_pred CCCEEEEECCCCchHHHHH
Confidence 4788999999999999653
No 448
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=75.93 E-value=2.3 Score=36.94 Aligned_cols=17 Identities=24% Similarity=0.362 Sum_probs=15.1
Q ss_pred cEEEEcCCCChHHHHHH
Q psy9277 71 DVIAQAQSGTGKTATFS 87 (178)
Q Consensus 71 ~v~v~aptGsGKTl~~l 87 (178)
++++.||+|+|||...-
T Consensus 490 ~~ll~G~~GtGKT~la~ 506 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTV 506 (758)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 69999999999997764
No 449
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=75.92 E-value=1.9 Score=33.92 Aligned_cols=25 Identities=20% Similarity=0.110 Sum_probs=19.1
Q ss_pred HHcCCcEEEEcCCCChHHHHHHHHH
Q psy9277 66 IVKGRDVIAQAQSGTGKTATFSISI 90 (178)
Q Consensus 66 i~~g~~v~v~aptGsGKTl~~ll~i 90 (178)
+..|..+++.+|+|+|||...+..+
T Consensus 120 i~~gsviLI~GpPGsGKTtLAlqlA 144 (331)
T 2vhj_A 120 RYASGMVIVTGKGNSGKTPLVHALG 144 (331)
T ss_dssp EEESEEEEEECSCSSSHHHHHHHHH
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHH
Confidence 3446678999999999997765443
No 450
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=75.80 E-value=1.6 Score=31.76 Aligned_cols=16 Identities=19% Similarity=0.254 Sum_probs=13.4
Q ss_pred cEEEEcCCCChHHHHH
Q psy9277 71 DVIAQAQSGTGKTATF 86 (178)
Q Consensus 71 ~v~v~aptGsGKTl~~ 86 (178)
.+++.||+||||+...
T Consensus 2 ~Iil~GpPGsGKgTqa 17 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQA 17 (206)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999998654
No 451
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=75.79 E-value=4.5 Score=33.08 Aligned_cols=79 Identities=18% Similarity=0.151 Sum_probs=39.3
Q ss_pred CChHHHHHHHHHHHHhhhcCCCceEEEEcCcHHHHHHHHHHHHHhccCCCceEEEE--------EcCccHHHHHHHhc--
Q psy9277 79 GTGKTATFSISILQSLDTQLRETQVLCLSPTRELAVQIQKVVLALGDFMNVQCHAC--------IGGTNLSEDLRKLD-- 148 (178)
Q Consensus 79 GsGKTl~~ll~il~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~--------~g~~~~~~~~~~~~-- 148 (178)
.++|-.. +.-++........+.++||.++++..+..+.+.+.......++++..+ +|+.+..++...+.
T Consensus 370 ~~~K~~~-L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F 448 (556)
T 4a2p_A 370 ENPKLEE-LVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAF 448 (556)
T ss_dssp CCHHHHH-HHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC-------------------------
T ss_pred CChHHHH-HHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHh
Confidence 4666533 333343333234567999999999999999998865422223333333 34455544433332
Q ss_pred -C--CCcEEEeCh
Q psy9277 149 -Y--GQHVVSGTP 158 (178)
Q Consensus 149 -~--~~~IlV~TP 158 (178)
+ ..+|+|+|-
T Consensus 449 ~~~g~~~vLvaT~ 461 (556)
T 4a2p_A 449 KTSKDNRLLIATS 461 (556)
T ss_dssp -----CCEEEEEC
T ss_pred cccCceEEEEEcC
Confidence 3 368999993
No 452
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=75.70 E-value=1.3 Score=33.54 Aligned_cols=16 Identities=31% Similarity=0.580 Sum_probs=13.6
Q ss_pred cEEEEcCCCChHHHHH
Q psy9277 71 DVIAQAQSGTGKTATF 86 (178)
Q Consensus 71 ~v~v~aptGsGKTl~~ 86 (178)
++.+.||+|+|||...
T Consensus 4 ~v~lvG~nGaGKSTLl 19 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLV 19 (270)
T ss_dssp EEEEEESSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999654
No 453
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=75.68 E-value=1.3 Score=34.34 Aligned_cols=19 Identities=16% Similarity=0.011 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCChHHHHH
Q psy9277 68 KGRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 68 ~g~~v~v~aptGsGKTl~~ 86 (178)
.|.-+.+.||+|||||...
T Consensus 89 ~g~ivgI~G~sGsGKSTL~ 107 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTA 107 (312)
T ss_dssp CCEEEEEECCTTSCHHHHH
T ss_pred CCEEEEEECCCCchHHHHH
Confidence 3667889999999999765
No 454
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=75.57 E-value=1.6 Score=33.07 Aligned_cols=18 Identities=39% Similarity=0.656 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCChHHHHH
Q psy9277 69 GRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 69 g~~v~v~aptGsGKTl~~ 86 (178)
|.-+.+.+|+|+|||...
T Consensus 30 Ge~~~i~G~NGsGKSTLl 47 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLL 47 (263)
T ss_dssp SSEEEEECCTTSSHHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 778899999999999765
No 455
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=75.51 E-value=1.4 Score=35.19 Aligned_cols=19 Identities=26% Similarity=0.226 Sum_probs=16.4
Q ss_pred cCCcEEEEcCCCChHHHHH
Q psy9277 68 KGRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 68 ~g~~v~v~aptGsGKTl~~ 86 (178)
.|+.+++.||+|+|||...
T Consensus 168 ~~~~i~l~G~~GsGKSTl~ 186 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLA 186 (377)
T ss_dssp TCCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4788999999999999654
No 456
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=75.47 E-value=2.7 Score=32.79 Aligned_cols=16 Identities=19% Similarity=0.119 Sum_probs=13.9
Q ss_pred cEEEEcCCCChHHHHH
Q psy9277 71 DVIAQAQSGTGKTATF 86 (178)
Q Consensus 71 ~v~v~aptGsGKTl~~ 86 (178)
-+.+.||+|||||...
T Consensus 94 iigI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4889999999999764
No 457
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=75.32 E-value=1.5 Score=34.27 Aligned_cols=17 Identities=24% Similarity=0.391 Sum_probs=14.0
Q ss_pred cEEEEcCCCChHHHHHH
Q psy9277 71 DVIAQAQSGTGKTATFS 87 (178)
Q Consensus 71 ~v~v~aptGsGKTl~~l 87 (178)
-.+++||+|+|||...-
T Consensus 25 ~~~i~G~NGsGKS~lle 41 (339)
T 3qkt_A 25 INLIIGQNGSGKSSLLD 41 (339)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 35789999999998753
No 458
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=75.28 E-value=3.6 Score=39.31 Aligned_cols=38 Identities=18% Similarity=0.127 Sum_probs=27.2
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcC
Q psy9277 68 KGRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSP 108 (178)
Q Consensus 68 ~g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~P 108 (178)
.|..+++.+++|+|||...+--+.+.+. .+..++|+.-
T Consensus 33 ~G~i~lI~G~pGsGKT~LAlqla~~~~~---~G~~vlYI~t 70 (1706)
T 3cmw_A 33 MGRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDA 70 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh---CCCceEEEEe
Confidence 4789999999999999887655554433 2446666663
No 459
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=74.67 E-value=1.3 Score=35.57 Aligned_cols=21 Identities=29% Similarity=0.485 Sum_probs=17.6
Q ss_pred HHcCCcEEEEcCCCChHHHHH
Q psy9277 66 IVKGRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 66 i~~g~~v~v~aptGsGKTl~~ 86 (178)
+..|.-+.+.+|+|||||...
T Consensus 44 i~~Ge~~~llGpsGsGKSTLL 64 (390)
T 3gd7_A 44 ISPGQRVGLLGRTGSGKSTLL 64 (390)
T ss_dssp ECTTCEEEEEESTTSSHHHHH
T ss_pred EcCCCEEEEECCCCChHHHHH
Confidence 345889999999999999764
No 460
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=74.65 E-value=4.2 Score=33.70 Aligned_cols=31 Identities=26% Similarity=0.287 Sum_probs=22.7
Q ss_pred HHHcCCcEEEEcCCCChHHHHHHHHHHHHhh
Q psy9277 65 PIVKGRDVIAQAQSGTGKTATFSISILQSLD 95 (178)
Q Consensus 65 ~i~~g~~v~v~aptGsGKTl~~ll~il~~l~ 95 (178)
.+..|.-+.+.+|+|||||.....-++.-+.
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~ 65 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGII 65 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3446889999999999999876654344343
No 461
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=74.63 E-value=2.1 Score=43.36 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=18.7
Q ss_pred HHHH-HHcCCcEEEEcCCCChHHHH
Q psy9277 62 SIKP-IVKGRDVIAQAQSGTGKTAT 85 (178)
Q Consensus 62 ~i~~-i~~g~~v~v~aptGsGKTl~ 85 (178)
.+.. +..++.++++||||+|||..
T Consensus 1296 ll~~ll~~~~pvLL~GptGtGKT~l 1320 (3245)
T 3vkg_A 1296 VLHAWLSEHRPLILCGPPGSGKTMT 1320 (3245)
T ss_dssp HHHHHHHTTCCCEEESSTTSSHHHH
T ss_pred HHHHHHHCCCcEEEECCCCCCHHHH
Confidence 3443 44589999999999999954
No 462
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=74.33 E-value=1.7 Score=32.23 Aligned_cols=17 Identities=12% Similarity=0.210 Sum_probs=14.6
Q ss_pred cEEEEcCCCChHHHHHH
Q psy9277 71 DVIAQAQSGTGKTATFS 87 (178)
Q Consensus 71 ~v~v~aptGsGKTl~~l 87 (178)
-+.+.|+.|||||...-
T Consensus 24 iI~I~G~~GSGKST~a~ 40 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCA 40 (252)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58899999999997753
No 463
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=74.33 E-value=1.8 Score=31.07 Aligned_cols=18 Identities=22% Similarity=0.274 Sum_probs=14.9
Q ss_pred CcEEEEcCCCChHHHHHH
Q psy9277 70 RDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 70 ~~v~v~aptGsGKTl~~l 87 (178)
..+.++|+.|||||.+.-
T Consensus 13 ~iIgltG~~GSGKSTva~ 30 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCE 30 (192)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468899999999997753
No 464
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=74.23 E-value=1.4 Score=34.92 Aligned_cols=20 Identities=35% Similarity=0.405 Sum_probs=16.9
Q ss_pred HcCCcEEEEcCCCChHHHHH
Q psy9277 67 VKGRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 67 ~~g~~v~v~aptGsGKTl~~ 86 (178)
..|.-+.+.+|+|||||...
T Consensus 39 ~~Ge~~~llGpnGsGKSTLL 58 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTIL 58 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHH
Confidence 34788999999999999654
No 465
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=74.18 E-value=1.6 Score=31.94 Aligned_cols=19 Identities=26% Similarity=0.427 Sum_probs=15.6
Q ss_pred cCCcEEEEcCCCChHHHHH
Q psy9277 68 KGRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 68 ~g~~v~v~aptGsGKTl~~ 86 (178)
.|.-+.+.|+.|||||...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~ 37 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYL 37 (230)
T ss_dssp CCEEEEEECSTTSCHHHHH
T ss_pred CceEEEEECCCCCCHHHHH
Confidence 3667899999999999643
No 466
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=74.14 E-value=1.5 Score=34.89 Aligned_cols=19 Identities=42% Similarity=0.506 Sum_probs=16.3
Q ss_pred cCCcEEEEcCCCChHHHHH
Q psy9277 68 KGRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 68 ~g~~v~v~aptGsGKTl~~ 86 (178)
.|.-+.+.||+|||||...
T Consensus 28 ~Ge~~~llGpnGsGKSTLL 46 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTL 46 (359)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEEcCCCchHHHHH
Confidence 4788999999999999654
No 467
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=74.07 E-value=2.7 Score=36.39 Aligned_cols=25 Identities=40% Similarity=0.553 Sum_probs=19.8
Q ss_pred HHHHHHcCCc--EEEEcCCCChHHHHH
Q psy9277 62 SIKPIVKGRD--VIAQAQSGTGKTATF 86 (178)
Q Consensus 62 ~i~~i~~g~~--v~v~aptGsGKTl~~ 86 (178)
.+..+++|.| ++..|+||||||...
T Consensus 454 ~v~~~~~G~n~~i~ayGqtgsGKT~Tm 480 (715)
T 4h1g_A 454 LIQCSLDGTNVCVFAYGQTGSGKTFTM 480 (715)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCceEEEEccCCCCCchhhcc
Confidence 5667788875 677799999999764
No 468
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=74.07 E-value=2.6 Score=32.21 Aligned_cols=18 Identities=11% Similarity=0.032 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCChHHHHH
Q psy9277 69 GRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 69 g~~v~v~aptGsGKTl~~ 86 (178)
+..++|.||.|+|||...
T Consensus 31 ~~~v~i~G~~G~GKT~Ll 48 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLL 48 (350)
T ss_dssp CSEEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCcCCHHHHH
Confidence 689999999999999654
No 469
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=74.06 E-value=1.7 Score=32.29 Aligned_cols=17 Identities=18% Similarity=0.343 Sum_probs=14.2
Q ss_pred CcEEEEcCCCChHHHHH
Q psy9277 70 RDVIAQAQSGTGKTATF 86 (178)
Q Consensus 70 ~~v~v~aptGsGKTl~~ 86 (178)
.-+.+.||+|+|||...
T Consensus 25 e~~~liG~nGsGKSTLl 41 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFL 41 (240)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 55789999999999654
No 470
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=74.03 E-value=1.6 Score=38.54 Aligned_cols=17 Identities=24% Similarity=0.329 Sum_probs=14.9
Q ss_pred cEEEEcCCCChHHHHHH
Q psy9277 71 DVIAQAQSGTGKTATFS 87 (178)
Q Consensus 71 ~v~v~aptGsGKTl~~l 87 (178)
++++.||+|+|||...-
T Consensus 590 ~vLl~Gp~GtGKT~lA~ 606 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELAK 606 (854)
T ss_dssp EEEEBSCSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 79999999999997653
No 471
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=73.94 E-value=1.8 Score=30.60 Aligned_cols=17 Identities=24% Similarity=0.266 Sum_probs=14.3
Q ss_pred cEEEEcCCCChHHHHHH
Q psy9277 71 DVIAQAQSGTGKTATFS 87 (178)
Q Consensus 71 ~v~v~aptGsGKTl~~l 87 (178)
-+.+.++.|||||...-
T Consensus 4 ~i~i~G~~GsGKst~~~ 20 (208)
T 3ake_A 4 IVTIDGPSASGKSSVAR 20 (208)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57899999999997753
No 472
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=73.86 E-value=0.4 Score=42.26 Aligned_cols=54 Identities=22% Similarity=0.296 Sum_probs=30.2
Q ss_pred ccccccCCCCHHHHHHHHhCCC---CCCcHHHHHHHHHHHcCCcEEEEcCCCChHHHHHH
Q psy9277 31 VSTFDNMGLREDLLRGIYAYGF---EKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 31 ~~~f~~~~l~~~i~~~l~~~g~---~~~~~~Q~~~i~~i~~g~~v~v~aptGsGKTl~~l 87 (178)
..+|+++.-.+.+.+.+.+.-. ..+..... ..+..+..+++.||+|+|||...-
T Consensus 473 ~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~---~~~~~~~~vLL~GppGtGKT~Lak 529 (806)
T 1ypw_A 473 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLK---FGMTPSKGVLFYGPPGCGKTLLAK 529 (806)
T ss_dssp CCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTC---CCCCCCCCCCCBCCTTSSHHHHHH
T ss_pred cccccccccchhhhhhHHHHHHhhhhchHHHHh---cCCCCCceeEEECCCCCCHHHHHH
Confidence 4457776655556666654311 11100000 012346789999999999997653
No 473
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=73.74 E-value=1.9 Score=32.63 Aligned_cols=17 Identities=29% Similarity=0.503 Sum_probs=14.7
Q ss_pred cEEEEcCCCChHHHHHH
Q psy9277 71 DVIAQAQSGTGKTATFS 87 (178)
Q Consensus 71 ~v~v~aptGsGKTl~~l 87 (178)
++++.||+|+|||....
T Consensus 44 ~~ll~G~~G~GKt~la~ 60 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVH 60 (323)
T ss_dssp CEEEECSTTSSHHHHHH
T ss_pred eEEEECcCCCCHHHHHH
Confidence 59999999999997653
No 474
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=73.65 E-value=13 Score=30.85 Aligned_cols=18 Identities=22% Similarity=0.316 Sum_probs=15.1
Q ss_pred CcEEEEcCCCChHHHHHH
Q psy9277 70 RDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 70 ~~v~v~aptGsGKTl~~l 87 (178)
+-+.|.|+.|.|||..+.
T Consensus 153 ~vv~I~G~gGvGKTtLA~ 170 (549)
T 2a5y_B 153 FFLFLHGRAGSGKSVIAS 170 (549)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHH
Confidence 457899999999997765
No 475
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=73.63 E-value=1.5 Score=34.83 Aligned_cols=19 Identities=26% Similarity=0.426 Sum_probs=16.3
Q ss_pred cCCcEEEEcCCCChHHHHH
Q psy9277 68 KGRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 68 ~g~~v~v~aptGsGKTl~~ 86 (178)
.|.-+.+.||+|||||...
T Consensus 28 ~Ge~~~llGpnGsGKSTLL 46 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLL 46 (362)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCchHHHHH
Confidence 4788999999999999654
No 476
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=73.59 E-value=9.8 Score=30.96 Aligned_cols=58 Identities=5% Similarity=-0.054 Sum_probs=38.3
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccHHHHHHHhc----CCCcEEEeChHHH
Q psy9277 100 ETQVLCLSPTRELAVQIQKVVLALGDFMNVQCHACIGGTNLSEDLRKLD----YGQHVVSGTPGRV 161 (178)
Q Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~IlV~TP~~l 161 (178)
+...++++...+-+..+.+.+... +.++..++|+++..++...+. ...+|+|+|+..+
T Consensus 347 ~~~~~ivf~~~~~~~~l~~~L~~~----~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~ 408 (510)
T 2oca_A 347 DENAFVMFKHVSHGKAIFDLIKNE----YDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVF 408 (510)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHTT----CSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHH
T ss_pred CCCeEEEEecHHHHHHHHHHHHHc----CCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChh
Confidence 345666666677666666666543 457888899988766544332 4568999997554
No 477
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=73.56 E-value=2.1 Score=31.34 Aligned_cols=20 Identities=15% Similarity=0.268 Sum_probs=16.7
Q ss_pred cCCcEEEEcCCCChHHHHHH
Q psy9277 68 KGRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 68 ~g~~v~v~aptGsGKTl~~l 87 (178)
.+..+.+.++.|||||...-
T Consensus 15 ~~~~i~i~G~~gsGKst~~~ 34 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAK 34 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 46679999999999998753
No 478
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=73.47 E-value=3.5 Score=39.45 Aligned_cols=45 Identities=18% Similarity=0.121 Sum_probs=32.8
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcCcHHHHHHH
Q psy9277 69 GRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSPTRELAVQI 116 (178)
Q Consensus 69 g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~Pt~~L~~q~ 116 (178)
|+-+.+.+|.|||||...+..+.+. . +.+..|+++.+-.+|-...
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~~-~--~~g~~~~~i~~e~~~~~~~ 1475 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAAA-Q--REGKTCAFIDAEHALDPIY 1475 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHH-H--HTTCCEEEECTTSCCCHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH-H--hcCCeEEEEecCCCCCHHH
Confidence 5779999999999998876555432 2 2566888888777666554
No 479
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=73.46 E-value=1.5 Score=35.09 Aligned_cols=19 Identities=32% Similarity=0.485 Sum_probs=16.3
Q ss_pred cCCcEEEEcCCCChHHHHH
Q psy9277 68 KGRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 68 ~g~~v~v~aptGsGKTl~~ 86 (178)
.|.-+.+.||+|||||...
T Consensus 28 ~Ge~~~llGpsGsGKSTLL 46 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLL 46 (381)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEEcCCCchHHHHH
Confidence 4788999999999999654
No 480
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=73.46 E-value=6.5 Score=34.32 Aligned_cols=79 Identities=16% Similarity=0.116 Sum_probs=38.1
Q ss_pred CChHHHHHHHHHHHHhhhcCCCceEEEEcCcHHHHHHHHHHHHHhccCC--------CceEEEEEcCccHHHHHHHh---
Q psy9277 79 GTGKTATFSISILQSLDTQLRETQVLCLSPTRELAVQIQKVVLALGDFM--------NVQCHACIGGTNLSEDLRKL--- 147 (178)
Q Consensus 79 GsGKTl~~ll~il~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~--------~~~~~~~~g~~~~~~~~~~~--- 147 (178)
.++|-.. +.-++........+.++||.++++..+..+.+.+....... |......+|+.+..++...+
T Consensus 611 ~~~K~~~-L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F 689 (797)
T 4a2q_A 611 ENPKLEE-LVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAF 689 (797)
T ss_dssp CCHHHHH-HHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC------------------------
T ss_pred CChHHHH-HHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHh
Confidence 4666543 33344333333455799999999999999999997642222 22333334555555444433
Q ss_pred cC--CCcEEEeCh
Q psy9277 148 DY--GQHVVSGTP 158 (178)
Q Consensus 148 ~~--~~~IlV~TP 158 (178)
.. ..+|||+|-
T Consensus 690 ~~~g~~~vLVaT~ 702 (797)
T 4a2q_A 690 KTSKDNRLLIATS 702 (797)
T ss_dssp ----CCSEEEEEC
T ss_pred hccCCceEEEEcC
Confidence 22 368999993
No 481
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=73.15 E-value=12 Score=29.08 Aligned_cols=49 Identities=18% Similarity=0.214 Sum_probs=31.7
Q ss_pred CCHHHHHHHHhCCCC-----CCcHHHHHHHHH-HHc----------------CCcEEEEcCCCChHHHHHH
Q psy9277 39 LREDLLRGIYAYGFE-----KPSAIQQRSIKP-IVK----------------GRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 39 l~~~i~~~l~~~g~~-----~~~~~Q~~~i~~-i~~----------------g~~v~v~aptGsGKTl~~l 87 (178)
.++++++..++.|+. ..+.--...+.. +.. |+.+++.|++|+|||...+
T Consensus 92 ~peelie~A~~~~IPVL~T~~~ts~~~~~l~~~l~~~~~~~~~~H~~~v~~~g~~vl~~G~sG~GKSt~a~ 162 (314)
T 1ko7_A 92 PPEELIEAAKEHETPLITSKIATTQLMSRLTTFLEHELARTTSLHGVLVDVYGVGVLITGDSGIGKSETAL 162 (314)
T ss_dssp CCHHHHHHHHHTTCCEEECCSCHHHHHHHHHHHHHHHTCEEEEEESEEEEETTEEEEEEESTTSSHHHHHH
T ss_pred CCHHHHHHHHHCCCeEEEECCchhHHHHHHHHHHHHhhccceeeeEEEEEECCEEEEEEeCCCCCHHHHHH
Confidence 478889888888774 122222222222 222 7899999999999975543
No 482
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=73.14 E-value=7.4 Score=33.58 Aligned_cols=52 Identities=6% Similarity=0.053 Sum_probs=38.9
Q ss_pred EEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccHHH---HHHHhcC---CCcEEEeCh
Q psy9277 103 VLCLSPTRELAVQIQKVVLALGDFMNVQCHACIGGTNLSE---DLRKLDY---GQHVVSGTP 158 (178)
Q Consensus 103 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~---~~~IlV~TP 158 (178)
.+++++++.-+.++++.+... ++.+..++|+.+..+ ....... ..+|+|+|-
T Consensus 323 ~iIf~~s~~~ie~la~~L~~~----g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATd 380 (677)
T 3rc3_A 323 DCIVCFSKNDIYSVSRQIEIR----GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATD 380 (677)
T ss_dssp EEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECG
T ss_pred CEEEEcCHHHHHHHHHHHHhc----CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCc
Confidence 466789998888888888764 788899999998774 3333343 369999994
No 483
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=72.90 E-value=1.9 Score=31.64 Aligned_cols=19 Identities=21% Similarity=0.398 Sum_probs=15.0
Q ss_pred cCCcEEEEcCCCChHHHHH
Q psy9277 68 KGRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 68 ~g~~v~v~aptGsGKTl~~ 86 (178)
..+-+++.||+||||+...
T Consensus 28 k~kiI~llGpPGsGKgTqa 46 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQC 46 (217)
T ss_dssp SCEEEEEECCTTCCHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3456788999999997654
No 484
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=72.85 E-value=0.64 Score=38.46 Aligned_cols=56 Identities=13% Similarity=0.048 Sum_probs=35.5
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCccHHHHHHH---hc-CCCcEEEeCh
Q psy9277 99 RETQVLCLSPTRELAVQIQKVVLALGDFMNVQCHACIGGTNLSEDLRK---LD-YGQHVVSGTP 158 (178)
Q Consensus 99 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~-~~~~IlV~TP 158 (178)
.+.++||.++++..+..+++.+.+ .+..+..++|+.+..++... .. ...+|+|+|-
T Consensus 356 ~~~~~LVF~~s~~~a~~l~~~L~~----~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~ 415 (508)
T 3fho_A 356 TIGQSIIFCKKKDTAEEIARRMTA----DGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTN 415 (508)
T ss_dssp -CCCEEEBCSSTTTTTHHHHHHTT----TTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHh----CCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCC
Confidence 446899999999999988887754 36777778877655433222 22 3468999884
No 485
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=72.78 E-value=1.7 Score=30.77 Aligned_cols=19 Identities=26% Similarity=0.480 Sum_probs=15.9
Q ss_pred cCCcEEEEcCCCChHHHHH
Q psy9277 68 KGRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 68 ~g~~v~v~aptGsGKTl~~ 86 (178)
.+..+.+.|++|+|||..+
T Consensus 25 ~~~~v~lvG~~g~GKSTLl 43 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSAL 43 (210)
T ss_dssp CSEEEEEEECTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4667999999999999654
No 486
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=72.74 E-value=0.86 Score=32.56 Aligned_cols=16 Identities=19% Similarity=0.312 Sum_probs=13.5
Q ss_pred cEEEEcCCCChHHHHH
Q psy9277 71 DVIAQAQSGTGKTATF 86 (178)
Q Consensus 71 ~v~v~aptGsGKTl~~ 86 (178)
-+++.|++|||||...
T Consensus 2 ~I~i~G~~GsGKsTl~ 17 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLV 17 (214)
T ss_dssp EEEEEEEEEEEHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 3789999999999765
No 487
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=72.68 E-value=1.6 Score=34.78 Aligned_cols=19 Identities=42% Similarity=0.559 Sum_probs=16.4
Q ss_pred cCCcEEEEcCCCChHHHHH
Q psy9277 68 KGRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 68 ~g~~v~v~aptGsGKTl~~ 86 (178)
.|.-+.+.||+|||||...
T Consensus 28 ~Ge~~~llGpnGsGKSTLL 46 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTL 46 (372)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCcHHHHHH
Confidence 4788999999999999664
No 488
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=72.60 E-value=1.7 Score=34.75 Aligned_cols=19 Identities=37% Similarity=0.546 Sum_probs=16.3
Q ss_pred cCCcEEEEcCCCChHHHHH
Q psy9277 68 KGRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 68 ~g~~v~v~aptGsGKTl~~ 86 (178)
.|.-+.+.+|+|||||...
T Consensus 36 ~Ge~~~llGpnGsGKSTLL 54 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTL 54 (372)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCChHHHHH
Confidence 4788999999999999654
No 489
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=72.52 E-value=1.8 Score=32.83 Aligned_cols=18 Identities=22% Similarity=0.198 Sum_probs=15.0
Q ss_pred CcEEEEcCCCChHHHHHH
Q psy9277 70 RDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 70 ~~v~v~aptGsGKTl~~l 87 (178)
.-+.+.|+.|||||...-
T Consensus 76 ~iI~I~G~~GSGKSTva~ 93 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQ 93 (281)
T ss_dssp EEEEEEECTTSCHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 358999999999997753
No 490
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=72.51 E-value=5.3 Score=29.74 Aligned_cols=40 Identities=10% Similarity=0.112 Sum_probs=27.3
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcCcHH
Q psy9277 69 GRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSPTRE 111 (178)
Q Consensus 69 g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~Pt~~ 111 (178)
|+=.+++|+-|+|||...+--+..... .+.+++++-|.+.
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~---~g~kvli~kp~~D 58 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQI---AQYKCLVIKYAKD 58 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHT---TTCCEEEEEETTC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHH---CCCeEEEEeecCC
Confidence 666778888899999776544443322 4567888877754
No 491
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=72.45 E-value=1.4 Score=34.91 Aligned_cols=20 Identities=25% Similarity=0.386 Sum_probs=16.7
Q ss_pred HcCCcEEEEcCCCChHHHHH
Q psy9277 67 VKGRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 67 ~~g~~v~v~aptGsGKTl~~ 86 (178)
..|.-+.+.||+|||||...
T Consensus 24 ~~Ge~~~llGpnGsGKSTLL 43 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFL 43 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHH
T ss_pred cCCCEEEEECCCCccHHHHH
Confidence 34788999999999999654
No 492
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=72.41 E-value=2.5 Score=37.32 Aligned_cols=19 Identities=26% Similarity=0.408 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCChHHHHHH
Q psy9277 69 GRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 69 g~~v~v~aptGsGKTl~~l 87 (178)
..++++.||+|+|||...-
T Consensus 191 ~~~vlL~G~pG~GKT~la~ 209 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVE 209 (854)
T ss_dssp CCCCEEEECTTSCHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHH
Confidence 4589999999999997643
No 493
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=72.10 E-value=2.1 Score=31.85 Aligned_cols=19 Identities=26% Similarity=0.331 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCChHHHHHH
Q psy9277 69 GRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 69 g~~v~v~aptGsGKTl~~l 87 (178)
...+.+.+|+|||||...-
T Consensus 9 ~~~i~i~G~~GsGKsTla~ 27 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSR 27 (233)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4579999999999997754
No 494
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=72.02 E-value=1.8 Score=34.40 Aligned_cols=19 Identities=21% Similarity=0.359 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCChHHHHHH
Q psy9277 69 GRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 69 g~~v~v~aptGsGKTl~~l 87 (178)
|.-+.+.||+|+|||...-
T Consensus 157 g~vi~lvG~nGsGKTTll~ 175 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLG 175 (359)
T ss_dssp SEEEEEECCTTSCHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHH
Confidence 4468899999999997653
No 495
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=71.99 E-value=2.5 Score=30.30 Aligned_cols=19 Identities=11% Similarity=0.246 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCChHHHHHH
Q psy9277 69 GRDVIAQAQSGTGKTATFS 87 (178)
Q Consensus 69 g~~v~v~aptGsGKTl~~l 87 (178)
+..+.+.+++|||||...-
T Consensus 3 ~~~i~i~G~~gsGkst~~~ 21 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAK 21 (219)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 4578999999999998753
No 496
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=71.93 E-value=1.8 Score=33.35 Aligned_cols=18 Identities=17% Similarity=0.102 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCChHHHHH
Q psy9277 69 GRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 69 g~~v~v~aptGsGKTl~~ 86 (178)
|.-+.+.||+|||||...
T Consensus 80 g~iigI~G~~GsGKSTl~ 97 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTA 97 (308)
T ss_dssp CEEEEEEECTTSSHHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 557889999999999765
No 497
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=71.63 E-value=5.8 Score=29.97 Aligned_cols=53 Identities=13% Similarity=0.070 Sum_probs=29.5
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHhhhcCCCceEEEEcCcHHHHHHHHHHHHHhc
Q psy9277 68 KGRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSPTRELAVQIQKVVLALG 124 (178)
Q Consensus 68 ~g~~v~v~aptGsGKTl~~ll~il~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 124 (178)
.|..+++.+.+|+||| .+.+-.+..-.. ++-+++|++- .+-..++.+.++.++
T Consensus 20 ~gs~~li~g~p~~~~~-~l~~qfl~~g~~--~Ge~~~~~~~-~e~~~~l~~~~~~~G 72 (260)
T 3bs4_A 20 HSLILIHEEDASSRGK-DILFYILSRKLK--SDNLVGMFSI-SYPLQLIIRILSRFG 72 (260)
T ss_dssp TCEEEEEECSGGGCHH-HHHHHHHHHHHH--TTCEEEEEEC-SSCHHHHHHHHHHTT
T ss_pred CCcEEEEEeCCCccHH-HHHHHHHHHHHH--CCCcEEEEEE-eCCHHHHHHHHHHcC
Confidence 3567888877777777 333333332222 3557777764 334455555555553
No 498
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=71.62 E-value=11 Score=33.67 Aligned_cols=77 Identities=17% Similarity=0.133 Sum_probs=38.8
Q ss_pred ChHHHHHHHHHHHHhhhcCCCceEEEEcCcHHHHHHHHHHHHHhccCCCceEE--------EEEcCccHHHHHHHh---c
Q psy9277 80 TGKTATFSISILQSLDTQLRETQVLCLSPTRELAVQIQKVVLALGDFMNVQCH--------ACIGGTNLSEDLRKL---D 148 (178)
Q Consensus 80 sGKTl~~ll~il~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~--------~~~g~~~~~~~~~~~---~ 148 (178)
++|... +.-++........+.++||.++++..+..+.+.+.......++++. .++|+++..++...+ .
T Consensus 612 ~~K~~~-L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr 690 (936)
T 4a2w_A 612 NPKLEE-LVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFK 690 (936)
T ss_dssp CHHHHH-HHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC-------------------------
T ss_pred CHHHHH-HHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhh
Confidence 555433 3334433332345679999999999999999999875322233333 334556555544433 2
Q ss_pred C--CCcEEEeC
Q psy9277 149 Y--GQHVVSGT 157 (178)
Q Consensus 149 ~--~~~IlV~T 157 (178)
. ..+|||+|
T Consensus 691 ~~g~~~VLVaT 701 (936)
T 4a2w_A 691 TSKDNRLLIAT 701 (936)
T ss_dssp ---CCSEEEEE
T ss_pred ccCCeeEEEEe
Confidence 2 36899999
No 499
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=71.52 E-value=1.8 Score=36.52 Aligned_cols=20 Identities=35% Similarity=0.433 Sum_probs=16.9
Q ss_pred HcCCcEEEEcCCCChHHHHH
Q psy9277 67 VKGRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 67 ~~g~~v~v~aptGsGKTl~~ 86 (178)
..|+-+.+.||+|||||...
T Consensus 365 ~~G~~~~ivG~sGsGKSTll 384 (578)
T 4a82_A 365 EKGETVAFVGMSGGGKSTLI 384 (578)
T ss_dssp CTTCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCChHHHHH
Confidence 34889999999999999654
No 500
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=71.51 E-value=1.9 Score=33.75 Aligned_cols=18 Identities=28% Similarity=0.350 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCChHHHHH
Q psy9277 69 GRDVIAQAQSGTGKTATF 86 (178)
Q Consensus 69 g~~v~v~aptGsGKTl~~ 86 (178)
|.-+.+.||+|+|||...
T Consensus 129 g~vi~lvG~nGaGKTTll 146 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTI 146 (328)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 567899999999999764
Done!