RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9277
(178 letters)
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 222
Score = 133 bits (334), Expect = 5e-40
Identities = 123/149 (82%), Positives = 138/149 (92%)
Query: 16 DLSNVEFETSEDVEVVSTFDNMGLREDLLRGIYAYGFEKPSAIQQRSIKPIVKGRDVIAQ 75
D++ VEFETSE+V+V TFD MGLREDLLRGIYAYGFEKPSAIQQR+IK I+KGRDVIAQ
Sbjct: 1 DMTKVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQ 60
Query: 76 AQSGTGKTATFSISILQSLDTQLRETQVLCLSPTRELAVQIQKVVLALGDFMNVQCHACI 135
+QSGTGKTATFSIS+LQ LD Q+RETQ L L+PTRELAVQIQK +LALGD+MNVQCHACI
Sbjct: 61 SQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACI 120
Query: 136 GGTNLSEDLRKLDYGQHVVSGTPGRVFDM 164
GGTN+ ED+RKLDYGQHVV+GTPGRVFDM
Sbjct: 121 GGTNVGEDIRKLDYGQHVVAGTPGRVFDM 149
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo
sapiens) [TaxId: 9606]}
Length = 218
Score = 105 bits (263), Expect = 2e-29
Identities = 94/140 (67%), Positives = 113/140 (80%), Gaps = 1/140 (0%)
Query: 29 EVVSTFDNMGLREDLLRGIYAYGFEKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSI 88
E+V +FD+M L E LLRGIYAYGFEKPSAIQQR+I P +KG DVIAQAQSGTGKTATF+I
Sbjct: 9 EIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAI 68
Query: 89 SILQSLDTQLRETQVLCLSPTRELAVQIQKVVLALGDFMNVQCHACIGGTNLSEDLRKLD 148
SILQ ++ L+ TQ L L+PTRELA QIQKVV+ALGD+M CHACIGGTN+ +++KL
Sbjct: 69 SILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQ 128
Query: 149 YG-QHVVSGTPGRVFDMIRS 167
H++ GTPGRVFDM+
Sbjct: 129 MEAPHIIVGTPGRVFDMLNR 148
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 212
Score = 97.2 bits (241), Expect = 3e-26
Identities = 86/144 (59%), Positives = 111/144 (77%), Gaps = 2/144 (1%)
Query: 23 ETSEDVEVVSTFDNMGLREDLLRGIYAYGFEKPSAIQQRSIKPIVKGRDVIAQAQSGTGK 82
+T+ D +VV FD+M L E+LLRG++ YGFE+PSAIQQR+I PI++G DV+AQAQSGTGK
Sbjct: 2 QTNYD-KVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGK 60
Query: 83 TATFSISILQSLDTQLRETQVLCLSPTRELAVQIQKVVLALGDFMNVQCHACIGGTNLSE 142
T TFSI+ LQ +DT ++ Q L L+PTRELA+QIQKVV+AL M+++ HACIGGT+ E
Sbjct: 61 TGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVE 120
Query: 143 DLRKLDYGQHVVSGTPGRVFDMIR 166
D L +V GTPGRVFD I+
Sbjct: 121 DAEGLR-DAQIVVGTPGRVFDNIQ 143
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase
VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}
Length = 238
Score = 97.3 bits (241), Expect = 6e-26
Identities = 47/162 (29%), Positives = 81/162 (50%), Gaps = 12/162 (7%)
Query: 13 IPEDLSNVEFETSEDVEVVSTFDNMGLREDLLRGIYAYGFEKPSAIQQRSIKPIVKGRDV 72
IP ++ ++ V+ FD + L + I +++P+ IQ+ +I I++ RD+
Sbjct: 5 IPVSVTGPDYSA---TNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDI 61
Query: 73 IAQAQSGTGKTATFSISILQSL---------DTQLRETQVLCLSPTRELAVQIQKVVLAL 123
+A AQ+G+GKTA F I I+ L ++ + L L+PTRELA+QI
Sbjct: 62 MACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKF 121
Query: 124 GDFMNVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMI 165
++ GG + +R++ G H++ TPGR+ D I
Sbjct: 122 SLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFI 163
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 206
Score = 93.5 bits (231), Expect = 7e-25
Identities = 53/134 (39%), Positives = 85/134 (63%), Gaps = 1/134 (0%)
Query: 32 STFDNMGLREDLLRGIYAYGFEKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISIL 91
+ F++ L+ +LL GI+ G+EKPS IQ+ SI + GRD++A+A++GTGK+ + I +L
Sbjct: 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLL 62
Query: 92 QSLDTQLRETQVLCLSPTRELAVQIQKVVL-ALGDFMNVQCHACIGGTNLSEDLRKLDYG 150
+ LD + Q + + PTRELA+Q+ ++ + + A GGTNL +D+ +LD
Sbjct: 63 ERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDT 122
Query: 151 QHVVSGTPGRVFDM 164
HVV TPGR+ D+
Sbjct: 123 VHVVIATPGRILDL 136
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 207
Score = 93.8 bits (232), Expect = 7e-25
Identities = 52/137 (37%), Positives = 71/137 (51%), Gaps = 2/137 (1%)
Query: 32 STFDNMGLREDLLRGIYAYGFEKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISIL 91
S F + L+ +LLR I GFE PS +Q I + G DV+ QA+SG GKTA F ++ L
Sbjct: 1 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL 60
Query: 92 QSLDTQLRETQVLCLSPTRELAVQIQKVVLALGDFMNVQCHACIGG-TNLSEDLRKLD-Y 149
Q L+ + VL + TRELA QI K +M A G ++ +D L
Sbjct: 61 QQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKN 120
Query: 150 GQHVVSGTPGRVFDMIR 166
H+V GTPGR+ + R
Sbjct: 121 CPHIVVGTPGRILALAR 137
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase
DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 206
Score = 91.2 bits (225), Expect = 7e-24
Identities = 60/133 (45%), Positives = 89/133 (66%)
Query: 32 STFDNMGLREDLLRGIYAYGFEKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISIL 91
+TF++ L+ +LL GI+ GFEKPS IQ+ +I + GRD++A+A++GTGKTA F I L
Sbjct: 1 NTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTL 60
Query: 92 QSLDTQLRETQVLCLSPTRELAVQIQKVVLALGDFMNVQCHACIGGTNLSEDLRKLDYGQ 151
+ + +L + Q L + PTRELA+Q +VV LG + C GGTNL +D+ +L+
Sbjct: 61 EKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETV 120
Query: 152 HVVSGTPGRVFDM 164
H++ GTPGRV D+
Sbjct: 121 HILVGTPGRVLDL 133
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 208
Score = 88.6 bits (219), Expect = 6e-23
Identities = 37/136 (27%), Positives = 72/136 (52%), Gaps = 3/136 (2%)
Query: 33 TFDNMGLREDLLRGIYAYGFEKPSAIQQRSIKPIVKGR-DVIAQAQSGTGKTATFSISIL 91
F+ + L +++L I GFEKP+ IQ + I + +++AQA++G+GKTA+F+I ++
Sbjct: 5 NFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLI 64
Query: 92 QSLDTQLRETQVLCLSPTRELAVQIQKVVLALGDFMNVQCHACIGGTNLSEDLRKLDYGQ 151
+ ++ ++ A+Q+ + +L N++ GG + ++ L
Sbjct: 65 ELVNENNGIEAIILTPTREL-AIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NA 122
Query: 152 HVVSGTPGRVFDMIRS 167
++V GTPGR+ D I
Sbjct: 123 NIVVGTPGRILDHINR 138
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 209
Score = 75.9 bits (185), Expect = 5e-18
Identities = 36/138 (26%), Positives = 64/138 (46%), Gaps = 4/138 (2%)
Query: 32 STFDNMGLREDLLRGIYAYGFEKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISIL 91
+ F + ++ I F KP+ IQ+R I ++G ++ Q+Q+GTGKT + + I+
Sbjct: 1 TQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIM 60
Query: 92 QSLDTQLRE----TQVLCLSPTRELAVQIQKVVLALGDFMNVQCHACIGGTNLSEDLRKL 147
+ + + E ++ + K+ + IGGT+ + L KL
Sbjct: 61 EKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKL 120
Query: 148 DYGQHVVSGTPGRVFDMI 165
+ H+V GTPGR+ D I
Sbjct: 121 NVQPHIVIGTPGRINDFI 138
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 237
Score = 67.2 bits (163), Expect = 1e-14
Identities = 23/140 (16%), Positives = 43/140 (30%), Gaps = 10/140 (7%)
Query: 32 STFDNMGLREDLLRGIYAYGFEKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISIL 91
F L ++ + +P AIQ+ K I++ A A +G GKT+ L
Sbjct: 22 CLFPEDFLLKEF-VEFFRKCVGEPRAIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSL 80
Query: 92 QSLDTQLRETQVLCLSPTRELAVQIQKVVLALGDFMNV------QCHACIGGTNLSEDLR 145
+ + PT L +Q + + + V + E+
Sbjct: 81 FLALKG---KRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFM 137
Query: 146 KLDYGQHVVSGTPGRVFDMI 165
+ +V T +
Sbjct: 138 QNLRNFKIVITTTQFLSKHY 157
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli
[TaxId: 562]}
Length = 206
Score = 64.3 bits (155), Expect = 9e-14
Identities = 21/139 (15%), Positives = 44/139 (31%), Gaps = 11/139 (7%)
Query: 31 VSTFDNMGLRE---DLLRGIYAYGFEKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFS 87
++ + + L +L+ + G+++ Q+ I ++ GRD + +G GK+ +
Sbjct: 1 MAQAEVLNLESGAKQVLQETF--GYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQ 58
Query: 88 ISILQSLDTQLRETQVLCLSPTRELAVQIQKVVLALGDFMNVQCHACIGGTNLSEDLRKL 147
I L + +SP L + A G L
Sbjct: 59 IPALLLNG------LTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCR 112
Query: 148 DYGQHVVSGTPGRVFDMIR 166
++ P R+
Sbjct: 113 TGQIRLLYIAPERLMLDNF 131
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 202
Score = 60.4 bits (145), Expect = 2e-12
Identities = 12/100 (12%), Positives = 35/100 (35%), Gaps = 3/100 (3%)
Query: 38 GLREDLLRGIYAYGFEKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISILQSLDTQ 97
+ + + G E+ Q +++ + G++++ + GKT +++++
Sbjct: 9 SISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKG 68
Query: 98 LRETQVLCLSPTRELAVQIQKVVLALGDFMNVQCHACIGG 137
+ L + P R LA + + +
Sbjct: 69 ---GKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDY 105
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 59.9 bits (144), Expect = 7e-12
Identities = 18/100 (18%), Positives = 32/100 (32%), Gaps = 13/100 (13%)
Query: 68 KGRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSPTRELAVQIQKVVLALGDFM 127
K R I G GKT + +I++ R + L L+PTR +A ++++ + L
Sbjct: 8 KKRLTIMDLHPGAGKTKRYLPAIVREAIK--RGLRTLILAPTRVVAAEMEEALRGLPIRY 65
Query: 128 NVQCHACIGGTNLSEDLRKLDYGQHVVSGTPGRVFDMIRS 167
+ V + S
Sbjct: 66 QTPAIRAE-----------HTGREIVDLMCHATFTMRLLS 94
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 39.0 bits (89), Expect = 1e-04
Identities = 24/116 (20%), Positives = 41/116 (35%), Gaps = 12/116 (10%)
Query: 37 MGLREDLLRGIYAYGFEKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISILQSLDT 96
M LR DL+ +P Q+ K + + +G GKT + L
Sbjct: 1 MVLRRDLI---------QPRIYQEVIYAKC-KETNCLIVLPTGLGKTLIAMMIAEYRLTK 50
Query: 97 QLRETQVLCLSPTRELAVQIQKVVLALGDFMNVQCHACIGGTNLSEDLRKLDYGQH 152
+VL L+PT+ L +Q + L + + A G + E + +
Sbjct: 51 --YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWARAKV 104
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 29.3 bits (64), Expect = 0.13
Identities = 12/38 (31%), Positives = 14/38 (36%)
Query: 68 KGRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLC 105
KG + G GKT F IL + T VL
Sbjct: 6 KGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLA 43
>d1u84a_ a.230.1.1 (A:) hypothetical protein YugE {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 81
Score = 25.5 bits (56), Expect = 1.4
Identities = 6/40 (15%), Positives = 17/40 (42%)
Query: 21 EFETSEDVEVVSTFDNMGLREDLLRGIYAYGFEKPSAIQQ 60
+ E + ++ V ++ ++ IY + F++P
Sbjct: 26 DVEAASVLQAVYETEDARTLAARIQSIYEFAFDEPIPFPH 65
>d2o14a1 b.18.1.32 (A:14-159) Hypothetical protein YxiM {Bacillus
subtilis [TaxId: 1423]}
Length = 146
Score = 24.5 bits (53), Expect = 5.7
Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Query: 35 DNMGLREDLLRGIYAYGFEKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSI 88
R D +G YGF+ P ++ + D + GT TF++
Sbjct: 19 VRASDRYDRSKG---YGFQTPENMRDVAASGAGVKSDAVEFLAYGTKSNNTFNV 69
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 24.2 bits (51), Expect = 9.0
Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 3/59 (5%)
Query: 66 IVKGRDVIAQAQSGTGKTATFSISILQSLDTQLRETQVLCLSPTRELAVQIQKVVLALG 124
+ GR + SGTGKT FSI L + + + E I K + G
Sbjct: 23 LPIGRSTLVSGTSGTGKT-LFSIQFL--YNGIIEFDEPGVFVTFEETPQDIIKNARSFG 78
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.133 0.368
Gapped
Lambda K H
0.267 0.0438 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 619,588
Number of extensions: 26516
Number of successful extensions: 65
Number of sequences better than 10.0: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 19
Length of query: 178
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 98
Effective length of database: 1,309,196
Effective search space: 128301208
Effective search space used: 128301208
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.8 bits)