Query psy9278
Match_columns 98
No_of_seqs 85 out of 87
Neff 4.0
Searched_HMMs 46136
Date Fri Aug 16 23:22:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9278.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9278hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08662 eIF2A: Eukaryotic tra 97.8 0.00012 2.6E-09 53.8 7.5 67 22-98 60-130 (194)
2 cd00200 WD40 WD40 domain, foun 97.5 0.0012 2.5E-08 44.6 8.3 70 21-98 219-288 (289)
3 cd00200 WD40 WD40 domain, foun 97.5 0.0011 2.3E-08 44.8 8.0 69 22-98 94-162 (289)
4 PTZ00421 coronin; Provisional 97.3 0.0013 2.9E-08 55.3 8.2 73 21-98 75-153 (493)
5 KOG1587|consensus 97.2 0.00043 9.4E-09 59.8 4.8 73 20-98 441-513 (555)
6 PF00400 WD40: WD domain, G-be 97.1 0.0015 3.2E-08 35.3 4.7 35 61-98 3-38 (39)
7 KOG0266|consensus 96.9 0.0048 1E-07 50.6 7.9 74 18-98 200-273 (456)
8 KOG0266|consensus 96.9 0.0047 1E-07 50.6 7.7 72 19-98 244-315 (456)
9 KOG0321|consensus 96.9 0.0013 2.9E-08 58.4 4.7 71 22-98 101-172 (720)
10 KOG0647|consensus 96.9 0.0054 1.2E-07 50.8 7.8 81 11-98 62-142 (347)
11 PTZ00421 coronin; Provisional 96.8 0.0077 1.7E-07 50.8 8.2 70 21-98 125-195 (493)
12 PLN00181 protein SPA1-RELATED; 96.7 0.0099 2.1E-07 51.4 8.1 70 22-98 533-603 (793)
13 PLN00181 protein SPA1-RELATED; 96.6 0.0099 2.1E-07 51.4 8.0 70 22-98 618-687 (793)
14 KOG0296|consensus 96.6 0.0089 1.9E-07 50.4 7.3 68 23-98 66-133 (399)
15 PTZ00420 coronin; Provisional 96.4 0.019 4E-07 49.7 8.3 70 21-98 125-194 (568)
16 PTZ00420 coronin; Provisional 96.3 0.022 4.7E-07 49.3 8.3 73 21-98 74-153 (568)
17 KOG0645|consensus 96.3 0.023 5E-07 46.6 7.9 76 16-98 56-132 (312)
18 PF08662 eIF2A: Eukaryotic tra 96.3 0.025 5.5E-07 41.5 7.3 62 24-92 103-164 (194)
19 KOG0277|consensus 96.2 0.022 4.8E-07 46.6 7.3 84 7-98 134-218 (311)
20 KOG0310|consensus 96.1 0.027 5.8E-07 48.6 7.5 80 13-98 102-181 (487)
21 KOG0645|consensus 96.1 0.041 8.8E-07 45.2 8.1 82 11-98 4-88 (312)
22 KOG0294|consensus 95.5 0.027 5.8E-07 47.0 4.9 61 27-98 174-234 (362)
23 KOG0277|consensus 95.4 0.026 5.6E-07 46.2 4.7 84 10-98 49-132 (311)
24 KOG2055|consensus 95.2 0.078 1.7E-06 46.0 7.1 72 20-98 343-414 (514)
25 KOG0264|consensus 95.0 0.048 1E-06 46.4 5.2 74 19-98 225-300 (422)
26 smart00320 WD40 WD40 repeats. 95.0 0.14 3E-06 24.1 4.9 29 67-98 11-39 (40)
27 KOG0318|consensus 94.8 0.095 2.1E-06 46.2 6.6 72 20-98 442-514 (603)
28 KOG2106|consensus 94.7 0.16 3.5E-06 44.8 7.7 71 19-98 198-272 (626)
29 KOG0284|consensus 94.3 0.059 1.3E-06 46.2 4.2 77 14-98 88-165 (464)
30 KOG0315|consensus 94.0 0.076 1.7E-06 43.5 4.0 49 45-98 103-151 (311)
31 KOG1274|consensus 93.6 0.21 4.5E-06 46.1 6.4 65 27-98 194-259 (933)
32 TIGR03866 PQQ_ABC_repeats PQQ- 92.6 0.85 1.8E-05 32.4 7.2 66 24-98 209-276 (300)
33 KOG1587|consensus 92.0 0.58 1.3E-05 40.8 6.7 81 15-98 174-270 (555)
34 KOG0269|consensus 91.9 0.12 2.7E-06 47.0 2.6 76 17-98 83-161 (839)
35 KOG0772|consensus 91.7 0.42 9E-06 42.4 5.6 75 17-98 264-344 (641)
36 COG2319 FOG: WD40 repeat [Gene 91.5 2 4.4E-05 29.7 7.7 71 22-98 156-226 (466)
37 KOG0269|consensus 91.4 0.26 5.7E-06 45.0 4.2 69 23-98 178-247 (839)
38 KOG0272|consensus 91.0 0.34 7.4E-06 41.7 4.2 61 23-98 347-415 (459)
39 KOG1036|consensus 90.8 0.69 1.5E-05 38.3 5.7 66 23-98 15-80 (323)
40 KOG0283|consensus 90.3 0.44 9.5E-06 43.0 4.5 47 48-98 391-437 (712)
41 KOG0273|consensus 89.8 1.5 3.2E-05 38.4 7.1 68 22-98 402-479 (524)
42 TIGR03866 PQQ_ABC_repeats PQQ- 89.6 2.4 5.3E-05 30.0 7.1 69 23-98 32-100 (300)
43 PF00400 WD40: WD domain, G-be 87.7 1.4 3.1E-05 23.2 3.8 30 20-53 10-39 (39)
44 KOG0284|consensus 87.5 0.57 1.2E-05 40.4 3.1 77 14-98 131-207 (464)
45 COG2319 FOG: WD40 repeat [Gene 87.3 7.1 0.00015 27.0 7.9 71 20-98 197-268 (466)
46 KOG2445|consensus 86.9 4.6 0.0001 34.0 8.0 70 24-98 16-88 (361)
47 KOG1407|consensus 86.8 3 6.4E-05 34.5 6.7 72 18-98 144-216 (313)
48 KOG0271|consensus 85.6 2.5 5.4E-05 36.6 5.9 60 30-98 214-273 (480)
49 smart00461 WH1 WASP homology r 85.4 2.2 4.7E-05 29.1 4.6 50 22-72 16-67 (106)
50 KOG0280|consensus 84.8 1.6 3.4E-05 36.4 4.3 20 79-98 219-238 (339)
51 KOG2445|consensus 84.7 2.3 4.9E-05 35.8 5.2 66 23-92 114-193 (361)
52 KOG2048|consensus 84.6 2.3 4.9E-05 38.4 5.5 66 33-98 154-230 (691)
53 KOG0281|consensus 84.2 0.59 1.3E-05 40.1 1.6 55 34-98 370-425 (499)
54 KOG0289|consensus 84.0 2.4 5.3E-05 36.9 5.2 48 46-98 368-416 (506)
55 KOG0274|consensus 83.7 3.2 7E-05 35.8 5.9 56 34-98 341-397 (537)
56 KOG0263|consensus 83.7 1.7 3.7E-05 39.3 4.3 73 18-98 490-562 (707)
57 KOG0973|consensus 83.6 3 6.4E-05 39.0 5.9 70 20-98 128-198 (942)
58 PF11768 DUF3312: Protein of u 83.4 2.8 6.1E-05 37.0 5.4 64 32-98 217-286 (545)
59 KOG0772|consensus 82.6 1.6 3.4E-05 38.9 3.7 69 23-98 319-391 (641)
60 KOG1408|consensus 82.6 1.9 4.1E-05 40.0 4.2 28 68-98 459-486 (1080)
61 KOG0316|consensus 82.5 2.9 6.3E-05 34.4 4.9 76 14-98 52-128 (307)
62 KOG0275|consensus 82.3 0.49 1.1E-05 40.4 0.5 71 25-98 210-290 (508)
63 KOG0273|consensus 82.0 7 0.00015 34.4 7.2 70 20-98 316-386 (524)
64 KOG0299|consensus 81.9 3.9 8.6E-05 35.6 5.7 56 34-98 298-353 (479)
65 PRK01742 tolB translocation pr 81.6 6.4 0.00014 31.8 6.6 70 23-98 205-275 (429)
66 PRK02889 tolB translocation pr 81.6 6.8 0.00015 31.7 6.7 70 23-98 197-267 (427)
67 KOG0290|consensus 81.4 2.8 6E-05 35.2 4.5 50 9-67 189-240 (364)
68 KOG0646|consensus 81.4 5.8 0.00013 34.5 6.5 69 20-97 175-243 (476)
69 KOG0264|consensus 80.0 8.7 0.00019 33.0 7.1 84 7-98 261-344 (422)
70 KOG0271|consensus 79.9 3.9 8.4E-05 35.4 5.0 80 15-98 151-232 (480)
71 PRK05137 tolB translocation pr 79.4 8.9 0.00019 30.9 6.7 70 23-98 203-273 (435)
72 KOG0310|consensus 78.9 5.5 0.00012 34.8 5.6 65 26-98 201-265 (487)
73 KOG0313|consensus 78.9 1.8 3.9E-05 37.0 2.7 84 10-98 38-130 (423)
74 KOG0288|consensus 78.5 5.4 0.00012 34.6 5.4 59 34-98 399-458 (459)
75 PRK11028 6-phosphogluconolacto 78.3 16 0.00034 27.8 7.4 64 29-98 42-107 (330)
76 KOG0301|consensus 78.3 7.8 0.00017 35.4 6.6 66 21-98 219-285 (745)
77 KOG0279|consensus 77.4 13 0.00028 30.9 7.1 68 22-98 64-132 (315)
78 KOG1332|consensus 77.3 13 0.00027 30.7 7.0 60 34-98 24-85 (299)
79 KOG0282|consensus 77.1 2.7 5.9E-05 36.7 3.3 68 24-98 217-285 (503)
80 KOG1963|consensus 77.0 3.4 7.4E-05 37.9 4.0 47 49-98 183-232 (792)
81 KOG0274|consensus 75.8 7.6 0.00016 33.6 5.6 46 46-98 310-356 (537)
82 KOG0286|consensus 75.0 10 0.00023 31.7 6.0 70 22-98 92-171 (343)
83 KOG0296|consensus 74.5 12 0.00027 31.9 6.4 71 19-98 143-217 (399)
84 KOG0272|consensus 74.3 11 0.00025 32.6 6.3 76 15-98 297-372 (459)
85 KOG0315|consensus 74.3 7.1 0.00015 32.2 4.9 50 46-98 60-110 (311)
86 KOG0318|consensus 73.7 11 0.00023 33.8 6.1 70 23-98 192-262 (603)
87 KOG0647|consensus 73.5 3.8 8.3E-05 34.3 3.2 54 21-80 251-305 (347)
88 KOG1832|consensus 73.5 3.2 6.9E-05 39.6 3.0 29 67-98 1100-1128(1516)
89 PRK04922 tolB translocation pr 73.4 13 0.00028 30.0 6.2 68 23-96 205-273 (433)
90 KOG0639|consensus 73.1 9 0.00019 34.5 5.5 63 29-98 426-492 (705)
91 PF14727 PHTB1_N: PTHB1 N-term 71.9 13 0.00027 31.5 5.9 50 35-88 38-93 (418)
92 TIGR02800 propeller_TolB tol-p 70.5 19 0.00042 27.9 6.3 68 24-97 192-260 (417)
93 PF14157 YmzC: YmzC-like prote 69.5 9.1 0.0002 25.0 3.6 27 35-65 31-59 (63)
94 PRK04792 tolB translocation pr 69.4 19 0.00041 29.6 6.3 69 24-98 220-289 (448)
95 PF03178 CPSF_A: CPSF A subuni 69.3 15 0.00033 28.2 5.5 43 33-75 41-95 (321)
96 KOG0282|consensus 68.8 15 0.00033 32.3 5.9 67 24-98 261-327 (503)
97 KOG0646|consensus 68.6 4.6 9.9E-05 35.2 2.7 49 46-98 102-150 (476)
98 KOG1332|consensus 66.9 7.5 0.00016 32.0 3.5 79 16-98 144-238 (299)
99 KOG0288|consensus 66.2 3.3 7.1E-05 35.8 1.4 70 22-98 176-246 (459)
100 KOG0649|consensus 66.0 24 0.00051 29.3 6.2 61 30-98 123-183 (325)
101 KOG1523|consensus 65.9 14 0.0003 31.3 4.9 73 19-98 98-173 (361)
102 PF11768 DUF3312: Protein of u 65.7 11 0.00023 33.4 4.4 45 20-68 298-344 (545)
103 KOG0319|consensus 65.2 9.6 0.00021 35.0 4.1 67 23-98 66-132 (775)
104 KOG2055|consensus 64.8 25 0.00053 31.0 6.3 67 26-98 218-285 (514)
105 KOG4328|consensus 64.1 12 0.00025 32.9 4.3 82 12-98 410-492 (498)
106 PRK01742 tolB translocation pr 63.4 30 0.00066 27.9 6.4 67 25-98 251-319 (429)
107 KOG0305|consensus 63.4 29 0.00064 30.1 6.6 70 23-98 389-458 (484)
108 KOG0302|consensus 63.3 27 0.00058 30.2 6.2 70 23-98 259-329 (440)
109 PF01839 FG-GAP: FG-GAP repeat 62.9 5.5 0.00012 22.3 1.5 8 86-93 5-12 (34)
110 KOG0294|consensus 62.7 18 0.00038 30.6 5.0 64 30-98 49-112 (362)
111 KOG0313|consensus 61.3 23 0.00051 30.5 5.5 73 20-98 299-373 (423)
112 KOG2394|consensus 61.1 39 0.00085 30.5 7.0 73 23-98 221-317 (636)
113 KOG0278|consensus 61.0 29 0.00063 28.9 5.9 72 19-98 222-294 (334)
114 PF08954 DUF1900: Domain of un 61.0 27 0.00059 25.2 5.2 41 31-74 20-62 (136)
115 PRK11028 6-phosphogluconolacto 60.8 46 0.001 25.2 6.6 63 27-98 233-301 (330)
116 PF12894 Apc4_WD40: Anaphase-p 60.3 23 0.0005 21.1 4.0 37 59-98 2-38 (47)
117 PF10282 Lactonase: Lactonase, 59.0 50 0.0011 25.9 6.7 70 23-98 246-319 (345)
118 PRK03629 tolB translocation pr 58.5 41 0.00089 27.4 6.4 71 22-98 199-270 (429)
119 PF10282 Lactonase: Lactonase, 58.4 86 0.0019 24.5 8.0 67 29-97 44-113 (345)
120 KOG2048|consensus 58.2 48 0.001 30.3 7.2 83 8-98 9-95 (691)
121 PF03178 CPSF_A: CPSF A subuni 57.6 68 0.0015 24.6 7.1 77 13-98 121-199 (321)
122 PRK00178 tolB translocation pr 57.5 42 0.0009 26.7 6.1 69 23-97 200-269 (430)
123 PF15525 DUF4652: Domain of un 57.4 29 0.00063 27.2 5.0 44 21-65 111-158 (200)
124 PF14727 PHTB1_N: PTHB1 N-term 56.7 38 0.00083 28.7 6.1 67 30-98 83-160 (418)
125 KOG1036|consensus 56.7 23 0.00049 29.6 4.6 65 24-98 57-121 (323)
126 KOG4328|consensus 56.1 53 0.0011 28.9 6.9 71 21-96 186-260 (498)
127 KOG0286|consensus 56.0 73 0.0016 26.8 7.5 72 18-98 52-124 (343)
128 KOG0650|consensus 55.7 64 0.0014 29.6 7.5 45 34-80 401-453 (733)
129 KOG0267|consensus 55.5 6.3 0.00014 36.3 1.3 29 67-98 69-97 (825)
130 PRK04043 tolB translocation pr 54.8 79 0.0017 26.1 7.5 70 25-98 191-260 (419)
131 KOG1007|consensus 53.9 17 0.00036 30.7 3.4 67 23-98 172-242 (370)
132 KOG1517|consensus 52.5 15 0.00033 35.6 3.2 62 30-98 1312-1378(1387)
133 KOG0263|consensus 52.0 34 0.00074 31.3 5.3 63 27-98 541-604 (707)
134 KOG0293|consensus 51.2 27 0.00059 30.7 4.4 76 16-95 264-345 (519)
135 KOG1063|consensus 51.1 75 0.0016 29.4 7.2 73 19-98 52-126 (764)
136 PF12518 DUF3721: Protein of u 50.0 5.9 0.00013 23.0 0.2 8 27-34 24-31 (34)
137 KOG1034|consensus 49.9 97 0.0021 26.5 7.3 76 20-98 88-208 (385)
138 KOG0306|consensus 49.0 32 0.00068 32.2 4.6 50 45-98 85-134 (888)
139 PF05262 Borrelia_P83: Borreli 48.6 77 0.0017 27.7 6.8 61 29-96 401-465 (489)
140 KOG0270|consensus 47.9 35 0.00077 29.8 4.6 63 32-98 384-446 (463)
141 KOG0265|consensus 47.7 65 0.0014 27.1 5.9 68 23-98 92-160 (338)
142 PRK01029 tolB translocation pr 46.3 71 0.0015 26.2 6.0 39 27-66 190-230 (428)
143 KOG0319|consensus 46.1 71 0.0015 29.6 6.3 58 33-98 474-532 (775)
144 PF00780 CNH: CNH domain; Int 46.0 1.2E+02 0.0025 22.3 7.0 51 31-90 102-155 (275)
145 PF08728 CRT10: CRT10; InterP 45.7 58 0.0013 29.8 5.7 64 32-98 175-243 (717)
146 KOG0305|consensus 45.0 78 0.0017 27.6 6.2 60 27-98 183-244 (484)
147 KOG0279|consensus 44.7 40 0.00086 28.1 4.2 49 49-98 256-310 (315)
148 KOG0771|consensus 44.7 20 0.00043 30.7 2.6 27 18-44 10-36 (398)
149 KOG0308|consensus 44.5 19 0.00042 32.9 2.6 52 45-98 93-145 (735)
150 KOG1539|consensus 43.7 57 0.0012 30.7 5.4 52 31-98 457-520 (910)
151 KOG1523|consensus 43.5 83 0.0018 26.7 6.0 77 15-98 49-127 (361)
152 KOG2111|consensus 43.0 40 0.00087 28.4 4.1 62 30-95 143-205 (346)
153 PF01394 Clathrin_propel: Clat 41.9 32 0.0007 19.5 2.4 25 31-55 13-37 (37)
154 KOG2314|consensus 40.8 25 0.00055 31.9 2.7 68 20-92 444-513 (698)
155 TIGR02800 propeller_TolB tol-p 40.5 1.5E+02 0.0032 23.0 6.7 41 22-63 234-274 (417)
156 KOG0649|consensus 40.5 37 0.00081 28.2 3.5 57 18-82 7-64 (325)
157 TIGR01922 purO_arch IMP cycloh 40.0 65 0.0014 25.2 4.6 48 34-82 4-51 (199)
158 PF13517 VCBS: Repeat domain i 39.9 44 0.00096 19.4 2.9 38 46-93 15-53 (61)
159 PRK03629 tolB translocation pr 39.6 95 0.0021 25.3 5.7 40 24-64 245-284 (429)
160 PRK01029 tolB translocation pr 39.4 1.3E+02 0.0027 24.7 6.4 39 25-64 330-368 (428)
161 KOG0268|consensus 39.2 11 0.00024 32.4 0.3 13 86-98 82-94 (433)
162 KOG0302|consensus 38.9 1.3E+02 0.0028 26.2 6.5 75 18-98 299-375 (440)
163 KOG2314|consensus 38.7 26 0.00056 31.8 2.4 57 8-68 482-538 (698)
164 PF00965 TIMP: Tissue inhibito 38.7 83 0.0018 23.1 4.8 17 81-97 84-102 (181)
165 KOG4497|consensus 38.3 48 0.001 28.6 3.9 56 24-97 181-236 (447)
166 KOG4378|consensus 37.8 58 0.0012 29.5 4.4 69 21-98 34-106 (673)
167 PF13082 DUF3931: Protein of u 37.7 38 0.00083 22.0 2.5 19 34-52 38-56 (66)
168 KOG1539|consensus 37.5 1.2E+02 0.0025 28.8 6.4 56 36-98 216-272 (910)
169 KOG1034|consensus 37.2 1.9E+02 0.0041 24.8 7.2 81 12-97 29-119 (385)
170 KOG0973|consensus 36.8 84 0.0018 29.8 5.5 85 12-98 209-309 (942)
171 KOG0771|consensus 35.8 61 0.0013 27.8 4.1 49 45-98 164-212 (398)
172 KOG1445|consensus 35.7 37 0.00081 31.7 3.0 33 22-58 721-753 (1012)
173 PF15492 Nbas_N: Neuroblastoma 35.2 48 0.001 27.2 3.3 34 26-63 48-81 (282)
174 KOG0307|consensus 34.4 52 0.0011 31.5 3.8 78 17-98 60-144 (1049)
175 PLN02291 phospho-2-dehydro-3-d 34.3 9.4 0.0002 33.3 -0.9 40 27-74 268-307 (474)
176 KOG0295|consensus 34.1 2E+02 0.0043 24.9 6.9 72 23-98 279-361 (406)
177 KOG1446|consensus 33.7 99 0.0021 25.8 4.9 50 25-78 236-285 (311)
178 TIGR01358 DAHP_synth_II 3-deox 33.6 9.8 0.00021 32.9 -0.9 40 27-74 248-287 (443)
179 PF12234 Rav1p_C: RAVE protein 33.6 1.7E+02 0.0038 26.3 6.7 61 34-98 41-101 (631)
180 KOG1009|consensus 33.5 1.8E+02 0.0038 25.4 6.5 67 25-98 17-92 (434)
181 PRK04792 tolB translocation pr 33.4 1.6E+02 0.0035 24.2 6.2 39 25-64 265-303 (448)
182 COG1998 RPS31 Ribosomal protei 33.1 50 0.0011 20.8 2.4 36 48-89 4-41 (51)
183 PF05567 Neisseria_PilC: Neiss 32.8 87 0.0019 25.3 4.4 72 7-95 148-233 (335)
184 KOG0640|consensus 32.7 1.3E+02 0.0027 26.0 5.5 60 33-98 227-288 (430)
185 KOG0290|consensus 32.5 83 0.0018 26.7 4.3 75 19-98 94-178 (364)
186 KOG0306|consensus 32.5 82 0.0018 29.6 4.6 65 27-98 24-92 (888)
187 KOG4532|consensus 32.5 2.9E+02 0.0063 23.3 7.5 68 24-98 161-230 (344)
188 PF00568 WH1: WH1 domain; Int 32.2 1.2E+02 0.0025 20.4 4.4 44 28-71 28-73 (111)
189 KOG4283|consensus 31.1 91 0.002 26.6 4.4 59 32-98 304-362 (397)
190 COG0179 MhpD 2-keto-4-pentenoa 30.9 49 0.0011 26.4 2.7 45 7-67 210-254 (266)
191 KOG2110|consensus 30.8 1.6E+02 0.0035 25.3 5.8 83 6-95 94-197 (391)
192 KOG1063|consensus 30.2 89 0.0019 28.9 4.4 54 45-98 167-221 (764)
193 PRK04922 tolB translocation pr 30.0 1.6E+02 0.0034 23.8 5.5 39 25-64 251-289 (433)
194 KOG1912|consensus 29.9 30 0.00065 32.7 1.5 16 83-98 638-653 (1062)
195 KOG0642|consensus 29.9 83 0.0018 28.3 4.1 51 45-98 314-371 (577)
196 PF12293 DUF3625: Protein of u 29.8 73 0.0016 25.1 3.5 44 10-53 67-110 (241)
197 KOG0283|consensus 29.8 72 0.0016 29.3 3.8 37 59-98 256-294 (712)
198 KOG4547|consensus 29.3 1.9E+02 0.0041 25.9 6.2 52 44-98 77-129 (541)
199 PF03761 DUF316: Domain of unk 29.0 88 0.0019 23.5 3.7 61 31-95 173-237 (282)
200 KOG0275|consensus 28.6 48 0.0011 28.7 2.4 29 67-98 212-240 (508)
201 cd07394 MPP_Vps29 Homo sapiens 28.6 1.1E+02 0.0023 22.2 3.9 21 14-34 113-134 (178)
202 COG2351 Transthyretin-like pro 28.2 95 0.0021 22.7 3.6 47 42-91 22-68 (124)
203 PF02239 Cytochrom_D1: Cytochr 27.9 1.8E+02 0.0039 23.6 5.5 52 43-98 12-63 (369)
204 COG0793 Prc Periplasmic protea 27.4 78 0.0017 26.4 3.4 25 35-59 314-339 (406)
205 KOG0301|consensus 26.9 2.3E+02 0.005 26.3 6.4 54 35-98 192-246 (745)
206 PF10168 Nup88: Nuclear pore c 26.9 1.4E+02 0.003 27.1 5.1 35 19-57 144-181 (717)
207 PF14583 Pectate_lyase22: Olig 26.8 1.9E+02 0.0042 24.6 5.6 55 29-90 245-300 (386)
208 KOG2321|consensus 26.6 36 0.00079 31.0 1.4 39 58-98 41-79 (703)
209 KOG1275|consensus 26.5 1.6E+02 0.0034 28.5 5.4 64 28-98 272-339 (1118)
210 KOG2106|consensus 26.4 1.8E+02 0.0039 26.4 5.5 56 30-97 377-432 (626)
211 PRK02889 tolB translocation pr 26.4 2.5E+02 0.0053 22.8 6.0 67 24-98 242-311 (427)
212 KOG1538|consensus 26.0 1.9E+02 0.0042 27.4 5.8 73 18-97 50-158 (1081)
213 KOG1408|consensus 25.6 43 0.00094 31.6 1.7 51 46-97 480-530 (1080)
214 KOG0270|consensus 25.6 2.5E+02 0.0054 24.7 6.2 67 26-98 334-401 (463)
215 KOG1188|consensus 25.5 86 0.0019 26.8 3.3 48 45-98 48-99 (376)
216 PRK05137 tolB translocation pr 25.4 2.5E+02 0.0054 22.6 5.9 40 24-64 248-287 (435)
217 KOG0299|consensus 25.4 47 0.001 29.2 1.8 20 79-98 210-229 (479)
218 KOG4441|consensus 25.3 78 0.0017 27.5 3.1 57 34-94 428-487 (571)
219 PF07676 PD40: WD40-like Beta 25.2 1.2E+02 0.0026 16.1 3.2 27 25-52 12-38 (39)
220 smart00045 DAGKa Diacylglycero 25.2 62 0.0014 22.8 2.2 33 31-63 71-116 (160)
221 KOG0641|consensus 25.1 4.1E+02 0.0088 22.2 7.2 60 31-97 240-299 (350)
222 KOG2315|consensus 24.7 52 0.0011 29.4 2.0 31 24-57 273-304 (566)
223 KOG0276|consensus 24.5 1.8E+02 0.0038 27.1 5.2 49 47-98 119-168 (794)
224 TIGR03300 assembly_YfgL outer 24.2 2.7E+02 0.0058 21.5 5.7 50 44-98 286-335 (377)
225 PF08953 DUF1899: Domain of un 23.9 82 0.0018 20.1 2.3 37 20-56 27-63 (65)
226 PF10313 DUF2415: Uncharacteri 23.8 1.6E+02 0.0034 17.6 3.4 28 70-97 2-29 (43)
227 PF10877 DUF2671: Protein of u 23.8 68 0.0015 21.9 2.0 24 21-45 21-44 (90)
228 PF13970 DUF4221: Domain of un 23.7 2.2E+02 0.0049 22.2 5.2 47 30-77 51-100 (333)
229 KOG4547|consensus 23.6 1.4E+02 0.003 26.7 4.3 52 45-98 162-217 (541)
230 KOG2096|consensus 23.4 2.2E+02 0.0047 24.6 5.3 82 9-98 217-305 (420)
231 PRK04151 IMP cyclohydrolase; P 23.4 2E+02 0.0044 22.5 4.8 48 34-82 4-51 (197)
232 PF00930 DPPIV_N: Dipeptidyl p 23.3 3E+02 0.0066 21.5 5.9 50 19-69 181-232 (353)
233 KOG0278|consensus 23.3 43 0.00094 27.9 1.2 50 46-98 121-170 (334)
234 PF14894 Lsm_C: Lsm C-terminal 23.2 47 0.001 21.7 1.1 28 13-40 5-32 (64)
235 KOG1354|consensus 23.1 76 0.0016 27.4 2.6 26 70-98 27-52 (433)
236 KOG1240|consensus 23.0 2.9E+02 0.0062 27.6 6.5 78 12-97 1040-1124(1431)
237 KOG3914|consensus 22.9 1.6E+02 0.0035 25.3 4.5 61 23-98 153-220 (390)
238 KOG0639|consensus 22.7 1.1E+02 0.0024 27.8 3.6 71 22-98 466-536 (705)
239 cd05400 NT_2-5OAS_ClassI-CCAas 22.6 55 0.0012 22.1 1.4 31 12-48 12-42 (143)
240 KOG1534|consensus 22.2 15 0.00032 29.9 -1.7 27 10-37 119-150 (273)
241 COG5354 Uncharacterized protei 21.9 1.3E+02 0.0029 26.9 3.9 34 21-57 274-308 (561)
242 TIGR02697 WPE_wolbac Wolbachia 21.9 31 0.00068 20.3 0.1 12 24-35 22-33 (36)
243 PF01474 DAHP_synth_2: Class-I 21.2 19 0.00042 31.1 -1.3 42 25-74 249-290 (439)
244 PF08450 SGL: SMP-30/Gluconola 20.9 2.8E+02 0.0061 20.0 5.0 41 45-88 203-244 (246)
245 PF04714 BCL_N: BCL7, N-termin 20.9 49 0.0011 20.9 0.8 13 22-34 40-52 (52)
246 cd07387 MPP_PolD2_C PolD2 (DNA 20.8 2.2E+02 0.0047 22.5 4.6 42 21-63 211-256 (257)
247 TIGR01333 cyt_b559_beta cytoch 20.4 41 0.00089 20.5 0.4 16 16-31 5-20 (43)
248 PRK00178 tolB translocation pr 20.3 3.3E+02 0.0071 21.6 5.6 39 25-64 246-284 (430)
249 cd00851 MTH1175 This uncharact 20.3 1.5E+02 0.0034 18.5 3.1 21 48-68 23-43 (103)
250 PF08596 Lgl_C: Lethal giant l 20.3 3.5E+02 0.0075 22.5 5.9 61 35-98 98-170 (395)
251 KOG0650|consensus 20.2 96 0.0021 28.5 2.8 65 23-96 568-632 (733)
No 1
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=97.80 E-value=0.00012 Score=53.82 Aligned_cols=67 Identities=21% Similarity=0.565 Sum_probs=49.8
Q ss_pred cceeeeeeecCCccEEEE-ccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeec---CceEEe
Q psy9278 22 YQLFDCKWMPCSAKFIVL-GMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDF---EGKLQI 97 (98)
Q Consensus 22 yT~fD~kWIP~SArfV~l-G~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf---~G~L~i 97 (98)
-.+.|+.|=|.+.+|+++ |..|+ .+++|+++ .+.+.++.+ ....+..|-.. .+.||+|+| +|.|.+
T Consensus 60 ~~I~~~~WsP~g~~favi~g~~~~---~v~lyd~~---~~~i~~~~~-~~~n~i~wsP~---G~~l~~~g~~n~~G~l~~ 129 (194)
T PF08662_consen 60 GPIHDVAWSPNGNEFAVIYGSMPA---KVTLYDVK---GKKIFSFGT-QPRNTISWSPD---GRFLVLAGFGNLNGDLEF 129 (194)
T ss_pred CceEEEEECcCCCEEEEEEccCCc---ccEEEcCc---ccEeEeecC-CCceEEEECCC---CCEEEEEEccCCCcEEEE
Confidence 359999999999999766 87776 99999996 555666643 44556666433 578888765 577998
Q ss_pred C
Q psy9278 98 W 98 (98)
Q Consensus 98 w 98 (98)
|
T Consensus 130 w 130 (194)
T PF08662_consen 130 W 130 (194)
T ss_pred E
Confidence 8
No 2
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=97.50 E-value=0.0012 Score=44.56 Aligned_cols=70 Identities=17% Similarity=0.424 Sum_probs=53.9
Q ss_pred CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
+..+..+.|-|. .++++.|. ..|.|.+|++..++....-. .++.++.+..|-.. .+.|++|+.||.+.||
T Consensus 219 ~~~i~~~~~~~~-~~~~~~~~---~~~~i~i~~~~~~~~~~~~~-~~~~~i~~~~~~~~---~~~l~~~~~d~~i~iw 288 (289)
T cd00200 219 ENGVNSVAFSPD-GYLLASGS---EDGTIRVWDLRTGECVQTLS-GHTNSVTSLAWSPD---GKRLASGSADGTIRIW 288 (289)
T ss_pred CCceEEEEEcCC-CcEEEEEc---CCCcEEEEEcCCceeEEEcc-ccCCcEEEEEECCC---CCEEEEecCCCeEEec
Confidence 347788999998 66777664 58999999998765433333 45667899888655 4689999999999998
No 3
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=97.48 E-value=0.0011 Score=44.78 Aligned_cols=69 Identities=10% Similarity=0.316 Sum_probs=52.8
Q ss_pred cceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 22 YQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 22 yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
..+..+.|.|. .++++.|. ..|.+.+|+++.++....-. .++..+.|..|-.. .+.|++|+.+|.+.+|
T Consensus 94 ~~i~~~~~~~~-~~~~~~~~---~~~~i~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~---~~~l~~~~~~~~i~i~ 162 (289)
T cd00200 94 SYVSSVAFSPD-GRILSSSS---RDKTIKVWDVETGKCLTTLR-GHTDWVNSVAFSPD---GTFVASSSQDGTIKLW 162 (289)
T ss_pred CcEEEEEEcCC-CCEEEEec---CCCeEEEEECCCcEEEEEec-cCCCcEEEEEEcCc---CCEEEEEcCCCcEEEE
Confidence 36788999998 56777774 47999999998654332222 36678999999765 6789999999999987
No 4
>PTZ00421 coronin; Provisional
Probab=97.29 E-value=0.0013 Score=55.25 Aligned_cols=73 Identities=14% Similarity=0.277 Sum_probs=54.3
Q ss_pred CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCce-----eEEEEec-ccCceeeeecCCCCCCCceEEEeecCce
Q psy9278 21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQP-----ELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGK 94 (98)
Q Consensus 21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l-----~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~ 94 (98)
.-.+.+++|-|...++++.|+ ..|.|.||++..+.+ +.+..+. +...+.|..|-.+. ...||+|+.||.
T Consensus 75 ~~~V~~v~fsP~d~~~LaSgS---~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~--~~iLaSgs~Dgt 149 (493)
T PTZ00421 75 EGPIIDVAFNPFDPQKLFTAS---EDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA--MNVLASAGADMV 149 (493)
T ss_pred CCCEEEEEEcCCCCCEEEEEe---CCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCC--CCEEEEEeCCCE
Confidence 356899999995555555553 579999999987654 2333443 67889999995543 458999999999
Q ss_pred EEeC
Q psy9278 95 LQIW 98 (98)
Q Consensus 95 L~iw 98 (98)
+.||
T Consensus 150 VrIW 153 (493)
T PTZ00421 150 VNVW 153 (493)
T ss_pred EEEE
Confidence 9998
No 5
>KOG1587|consensus
Probab=97.24 E-value=0.00043 Score=59.76 Aligned_cols=73 Identities=21% Similarity=0.339 Sum_probs=56.7
Q ss_pred CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
.+| ++|++|=|...-..+++ +++|.|.||+|......-+....-...+.+.-| .+...+.||+||..|++.+|
T Consensus 441 ~~~-v~~vaWSptrpavF~~~---d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~--~s~~g~~lavGd~~G~~~~~ 513 (555)
T KOG1587|consen 441 PDY-VTDVAWSPTRPAVFATV---DGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVR--WSPNGKLLAVGDANGTTHIL 513 (555)
T ss_pred cce-eeeeEEcCcCceEEEEE---cCCCceehhhhhccccCCcccccccccccceee--cCCCCcEEEEecCCCcEEEE
Confidence 344 89999999886666665 799999999999998777776654466666655 33447899999999998875
No 6
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.14 E-value=0.0015 Score=35.34 Aligned_cols=35 Identities=20% Similarity=0.588 Sum_probs=29.6
Q ss_pred EEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 61 LVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 61 ~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
++..++ +..++.|..|-.. .+.||+|+.||.+.||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~---~~~~~s~~~D~~i~vw 38 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPD---GNFLASGSSDGTIRVW 38 (39)
T ss_dssp EEEEEESSSSSEEEEEEETT---SSEEEEEETTSEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecc---cccceeeCCCCEEEEE
Confidence 445555 7789999999877 6899999999999998
No 7
>KOG0266|consensus
Probab=96.93 E-value=0.0048 Score=50.59 Aligned_cols=74 Identities=14% Similarity=0.310 Sum_probs=56.9
Q ss_pred hcCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEe
Q psy9278 18 KSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQI 97 (98)
Q Consensus 18 ksl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~i 97 (98)
..-+.-++|++|-|.+..++.-. ..+.|+||.+..+...+-...-++..+=|+.|-.-+ +.++.|++||.+.|
T Consensus 200 ~~h~~~v~~~~fs~d~~~l~s~s----~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g---~~i~Sgs~D~tvri 272 (456)
T KOG0266|consen 200 SGHTRGVSDVAFSPDGSYLLSGS----DDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDG---NLLVSGSDDGTVRI 272 (456)
T ss_pred cccccceeeeEECCCCcEEEEec----CCceEEEeeccCCCeEEEEecCCCCceEEEEecCCC---CEEEEecCCCcEEE
Confidence 34566789999999999555444 688999999944433333333699999999995544 78999999999999
Q ss_pred C
Q psy9278 98 W 98 (98)
Q Consensus 98 w 98 (98)
|
T Consensus 273 W 273 (456)
T KOG0266|consen 273 W 273 (456)
T ss_pred E
Confidence 9
No 8
>KOG0266|consensus
Probab=96.92 E-value=0.0047 Score=50.64 Aligned_cols=72 Identities=13% Similarity=0.396 Sum_probs=59.6
Q ss_pred cCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 19 SLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 19 sl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
...--+|++.+.|.+ ++++-| ...|.++||++..++....-+. +..++-+.-|... .+.|++++.||.+.||
T Consensus 244 gH~~~v~~~~f~p~g-~~i~Sg---s~D~tvriWd~~~~~~~~~l~~-hs~~is~~~f~~d---~~~l~s~s~d~~i~vw 315 (456)
T KOG0266|consen 244 GHSTYVTSVAFSPDG-NLLVSG---SDDGTVRIWDVRTGECVRKLKG-HSDGISGLAFSPD---GNLLVSASYDGTIRVW 315 (456)
T ss_pred CCCCceEEEEecCCC-CEEEEe---cCCCcEEEEeccCCeEEEeeec-cCCceEEEEECCC---CCEEEEcCCCccEEEE
Confidence 445567999999999 888877 4799999999999776665555 4558999988776 4899999999999998
No 9
>KOG0321|consensus
Probab=96.90 E-value=0.0013 Score=58.40 Aligned_cols=71 Identities=20% Similarity=0.495 Sum_probs=59.8
Q ss_pred cceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEE-EecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 22 YQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVK-TVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 22 yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~-e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
.-+||++|||+-.+||. +-|.-.++.|+++.+++.=.. -+++.-++|-.-|. .+...-|+||.-||.+.||
T Consensus 101 nAifDl~wapge~~lVs----asGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~--~~n~~vF~tGgRDg~illW 172 (720)
T KOG0321|consen 101 NAIFDLKWAPGESLLVS----ASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFM--PTNPAVFCTGGRDGEILLW 172 (720)
T ss_pred ceeEeeccCCCceeEEE----ccCCceeeeeeeccceeecceeecccccccchhhhc--cCCCcceeeccCCCcEEEE
Confidence 45899999999999994 558999999999999876554 66788888888774 4457789999999999999
No 10
>KOG0647|consensus
Probab=96.88 E-value=0.0054 Score=50.83 Aligned_cols=81 Identities=20% Similarity=0.346 Sum_probs=65.7
Q ss_pred ceehhhhhcCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEee
Q psy9278 11 QIICLVEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGD 90 (98)
Q Consensus 11 QIIehi~ksl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGd 90 (98)
|.+--..++++=.|+|+.|.-...|..+-| ..|.+++|.|..+.+..+. -+..++||+-|=...+ -..||||+
T Consensus 62 ~~~~ka~~~~~~PvL~v~WsddgskVf~g~----~Dk~~k~wDL~S~Q~~~v~--~Hd~pvkt~~wv~~~~-~~cl~TGS 134 (347)
T KOG0647|consen 62 QLVPKAQQSHDGPVLDVCWSDDGSKVFSGG----CDKQAKLWDLASGQVSQVA--AHDAPVKTCHWVPGMN-YQCLVTGS 134 (347)
T ss_pred cccchhhhccCCCeEEEEEccCCceEEeec----cCCceEEEEccCCCeeeee--ecccceeEEEEecCCC-cceeEecc
Confidence 455567889999999999999997766554 6889999999999665554 4778899999854444 45899999
Q ss_pred cCceEEeC
Q psy9278 91 FEGKLQIW 98 (98)
Q Consensus 91 f~G~L~iw 98 (98)
+|-.|.-|
T Consensus 135 WDKTlKfW 142 (347)
T KOG0647|consen 135 WDKTLKFW 142 (347)
T ss_pred cccceeec
Confidence 99999988
No 11
>PTZ00421 coronin; Provisional
Probab=96.79 E-value=0.0077 Score=50.76 Aligned_cols=70 Identities=13% Similarity=0.244 Sum_probs=55.7
Q ss_pred CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
...+..+.|-|....+++.|+ ..|.|+||+++.++. +..++ +...+.|..|-.. .+.||+|+.||.+.||
T Consensus 125 ~~~V~~l~f~P~~~~iLaSgs---~DgtVrIWDl~tg~~--~~~l~~h~~~V~sla~spd---G~lLatgs~Dg~IrIw 195 (493)
T PTZ00421 125 TKKVGIVSFHPSAMNVLASAG---ADMVVNVWDVERGKA--VEVIKCHSDQITSLEWNLD---GSLLCTTSKDKKLNII 195 (493)
T ss_pred CCcEEEEEeCcCCCCEEEEEe---CCCEEEEEECCCCeE--EEEEcCCCCceEEEEEECC---CCEEEEecCCCEEEEE
Confidence 466889999998877777663 478999999998853 34444 6778999999553 4689999999999998
No 12
>PLN00181 protein SPA1-RELATED; Provisional
Probab=96.65 E-value=0.0099 Score=51.38 Aligned_cols=70 Identities=17% Similarity=0.338 Sum_probs=54.0
Q ss_pred cceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEe-cccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 22 YQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTV-EKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 22 yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~-e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
..+.++.|.|...+.++.|+ ..|.|.||++..+++ +..+ .+..++.|..|-.. ....||+|+.||.+.||
T Consensus 533 ~~v~~l~~~~~~~~~las~~---~Dg~v~lWd~~~~~~--~~~~~~H~~~V~~l~~~p~--~~~~L~Sgs~Dg~v~iW 603 (793)
T PLN00181 533 SKLSGICWNSYIKSQVASSN---FEGVVQVWDVARSQL--VTEMKEHEKRVWSIDYSSA--DPTLLASGSDDGSVKLW 603 (793)
T ss_pred CceeeEEeccCCCCEEEEEe---CCCeEEEEECCCCeE--EEEecCCCCCEEEEEEcCC--CCCEEEEEcCCCEEEEE
Confidence 35678899998777777665 379999999987754 3333 37788999999543 24689999999999998
No 13
>PLN00181 protein SPA1-RELATED; Provisional
Probab=96.64 E-value=0.0099 Score=51.39 Aligned_cols=70 Identities=11% Similarity=0.293 Sum_probs=54.9
Q ss_pred cceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 22 YQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 22 yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
..+..++|.|.+.+.++.|+ ..|.|.||++..++..+..-..+..++-+..|- ....|++|+.||.+.||
T Consensus 618 ~~v~~v~~~~~~g~~latgs---~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~----~~~~lvs~s~D~~ikiW 687 (793)
T PLN00181 618 ANICCVQFPSESGRSLAFGS---ADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV----DSSTLVSSSTDNTLKLW 687 (793)
T ss_pred CCeEEEEEeCCCCCEEEEEe---CCCeEEEEECCCCCccceEecCCCCCEEEEEEe----CCCEEEEEECCCEEEEE
Confidence 35778899888788888875 678999999987764433334577788899883 24589999999999998
No 14
>KOG0296|consensus
Probab=96.61 E-value=0.0089 Score=50.35 Aligned_cols=68 Identities=22% Similarity=0.478 Sum_probs=56.9
Q ss_pred ceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 23 QLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 23 T~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
.+|-+.==| ++++|+-|. |.-.--+|+++.|+ .+..-.+++.++-|+.|-.. ...|||||++|.|+||
T Consensus 66 svFavsl~P-~~~l~aTGG---gDD~AflW~~~~ge-~~~eltgHKDSVt~~~Fshd---gtlLATGdmsG~v~v~ 133 (399)
T KOG0296|consen 66 SVFAVSLHP-NNNLVATGG---GDDLAFLWDISTGE-FAGELTGHKDSVTCCSFSHD---GTLLATGDMSGKVLVF 133 (399)
T ss_pred ceEEEEeCC-CCceEEecC---CCceEEEEEccCCc-ceeEecCCCCceEEEEEccC---ceEEEecCCCccEEEE
Confidence 578888888 888888883 45667899999999 55566779999999999665 3699999999999997
No 15
>PTZ00420 coronin; Provisional
Probab=96.41 E-value=0.019 Score=49.74 Aligned_cols=70 Identities=10% Similarity=0.181 Sum_probs=55.0
Q ss_pred CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
.-.+..+.|-|....+++.|+ ..|.|+||++..++. +.+++.+..+.|..|-.. .+.||++.-||.+.||
T Consensus 125 ~~~V~sVaf~P~g~~iLaSgS---~DgtIrIWDl~tg~~--~~~i~~~~~V~Slswspd---G~lLat~s~D~~IrIw 194 (568)
T PTZ00420 125 KKKISIIDWNPMNYYIMCSSG---FDSFVNIWDIENEKR--AFQINMPKKLSSLKWNIK---GNLLSGTCVGKHMHII 194 (568)
T ss_pred CCcEEEEEECCCCCeEEEEEe---CCCeEEEEECCCCcE--EEEEecCCcEEEEEECCC---CCEEEEEecCCEEEEE
Confidence 356889999998777665553 368999999998864 344556778999999654 4689999999999998
No 16
>PTZ00420 coronin; Provisional
Probab=96.34 E-value=0.022 Score=49.32 Aligned_cols=73 Identities=15% Similarity=0.357 Sum_probs=52.4
Q ss_pred CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCce--e----EEEEec-ccCceeeeecCCCCCCCceEEEeecCc
Q psy9278 21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQP--E----LVKTVE-KPNAFKCGTFNASPLSERYLATGDFEG 93 (98)
Q Consensus 21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l--~----~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G 93 (98)
.-.+.++.|-|....+++.|+ ..|.|.||++..+.. . .+..+. +...+.|..|-.. ....||+|+.||
T Consensus 74 ~~~V~~lafsP~~~~lLASgS---~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~--g~~iLaSgS~Dg 148 (568)
T PTZ00420 74 TSSILDLQFNPCFSEILASGS---EDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPM--NYYIMCSSGFDS 148 (568)
T ss_pred CCCEEEEEEcCCCCCEEEEEe---CCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCC--CCeEEEEEeCCC
Confidence 457899999998555555553 688999999976432 1 122222 5678999999654 345679999999
Q ss_pred eEEeC
Q psy9278 94 KLQIW 98 (98)
Q Consensus 94 ~L~iw 98 (98)
.+.||
T Consensus 149 tIrIW 153 (568)
T PTZ00420 149 FVNIW 153 (568)
T ss_pred eEEEE
Confidence 99998
No 17
>KOG0645|consensus
Probab=96.32 E-value=0.023 Score=46.62 Aligned_cols=76 Identities=25% Similarity=0.479 Sum_probs=64.1
Q ss_pred hhhcCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCce
Q psy9278 16 VEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGK 94 (98)
Q Consensus 16 i~ksl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~ 94 (98)
+.....=|+=.+.|=|+-. +++.|++ .++..||+=.+++++++.-+| +.+-+||..|-+|. ++|||-+-|-+
T Consensus 56 ld~~hkrsVRsvAwsp~g~-~La~aSF---D~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG---~~LATCSRDKS 128 (312)
T KOG0645|consen 56 LDDGHKRSVRSVAWSPHGR-YLASASF---DATVVIWKKEDGEFECVATLEGHENEVKCVAWSASG---NYLATCSRDKS 128 (312)
T ss_pred ccccchheeeeeeecCCCc-EEEEeec---cceEEEeecCCCceeEEeeeeccccceeEEEEcCCC---CEEEEeeCCCe
Confidence 3334445677889999876 8888876 467889999999999999999 99999999998885 89999999998
Q ss_pred EEeC
Q psy9278 95 LQIW 98 (98)
Q Consensus 95 L~iw 98 (98)
+=||
T Consensus 129 VWiW 132 (312)
T KOG0645|consen 129 VWIW 132 (312)
T ss_pred EEEE
Confidence 8777
No 18
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=96.29 E-value=0.025 Score=41.55 Aligned_cols=62 Identities=23% Similarity=0.400 Sum_probs=44.5
Q ss_pred eeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecC
Q psy9278 24 LFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFE 92 (98)
Q Consensus 24 ~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~ 92 (98)
...++|=|.. +++++|..-+-.|.|++|+++ +.+.+.+.|++... +..|-+ .-|+|||..-.
T Consensus 103 ~n~i~wsP~G-~~l~~~g~~n~~G~l~~wd~~--~~~~i~~~~~~~~t-~~~WsP---dGr~~~ta~t~ 164 (194)
T PF08662_consen 103 RNTISWSPDG-RFLVLAGFGNLNGDLEFWDVR--KKKKISTFEHSDAT-DVEWSP---DGRYLATATTS 164 (194)
T ss_pred ceEEEECCCC-CEEEEEEccCCCcEEEEEECC--CCEEeeccccCcEE-EEEEcC---CCCEEEEEEec
Confidence 3568999995 566666666778999999998 77778888877643 334433 35888887643
No 19
>KOG0277|consensus
Probab=96.22 E-value=0.022 Score=46.59 Aligned_cols=84 Identities=14% Similarity=0.400 Sum_probs=66.3
Q ss_pred CCccceehhhhhcCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCce
Q psy9278 7 LDKPQIICLVEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERY 85 (98)
Q Consensus 7 ~~kPQIIehi~ksl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~ 85 (98)
+++|+=+.- -+.-++-+|.++|=|..+.++. ...|.|.+++|++......++ +| +..-+-||-| |....+-
T Consensus 134 ~~r~~Sv~T-f~gh~~~Iy~a~~sp~~~nlfa---s~Sgd~~l~lwdvr~~gk~~~--i~ah~~Eil~cdw--~ky~~~v 205 (311)
T KOG0277|consen 134 PNRPNSVQT-FNGHNSCIYQAAFSPHIPNLFA---SASGDGTLRLWDVRSPGKFMS--IEAHNSEILCCDW--SKYNHNV 205 (311)
T ss_pred CCCCcceEe-ecCCccEEEEEecCCCCCCeEE---EccCCceEEEEEecCCCceeE--EEeccceeEeecc--cccCCcE
Confidence 445554443 3447899999999999999885 567999999999987766666 55 3458899988 4555889
Q ss_pred EEEeecCceEEeC
Q psy9278 86 LATGDFEGKLQIW 98 (98)
Q Consensus 86 lAtGdf~G~L~iw 98 (98)
||||+-|+.+.+|
T Consensus 206 l~Tg~vd~~vr~w 218 (311)
T KOG0277|consen 206 LATGGVDNLVRGW 218 (311)
T ss_pred EEecCCCceEEEE
Confidence 9999999999988
No 20
>KOG0310|consensus
Probab=96.11 E-value=0.027 Score=48.64 Aligned_cols=80 Identities=18% Similarity=0.427 Sum_probs=61.4
Q ss_pred ehhhhhcCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecC
Q psy9278 13 ICLVEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFE 92 (98)
Q Consensus 13 Iehi~ksl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~ 92 (98)
|--.-+....+++.+|.=|+--...+.|+ ..+++++|.+++..+ .....-+..-++|+.+ ++-...-++||++|
T Consensus 102 iLR~~~ah~apv~~~~f~~~d~t~l~s~s---Dd~v~k~~d~s~a~v-~~~l~~htDYVR~g~~--~~~~~hivvtGsYD 175 (487)
T KOG0310|consen 102 ILRQLYAHQAPVHVTKFSPQDNTMLVSGS---DDKVVKYWDLSTAYV-QAELSGHTDYVRCGDI--SPANDHIVVTGSYD 175 (487)
T ss_pred HHHHHhhccCceeEEEecccCCeEEEecC---CCceEEEEEcCCcEE-EEEecCCcceeEeecc--ccCCCeEEEecCCC
Confidence 33334456678888999999999888884 678999999999996 3334448999999977 22223358999999
Q ss_pred ceEEeC
Q psy9278 93 GKLQIW 98 (98)
Q Consensus 93 G~L~iw 98 (98)
|.+.+|
T Consensus 176 g~vrl~ 181 (487)
T KOG0310|consen 176 GKVRLW 181 (487)
T ss_pred ceEEEE
Confidence 999998
No 21
>KOG0645|consensus
Probab=96.06 E-value=0.041 Score=45.20 Aligned_cols=82 Identities=12% Similarity=0.298 Sum_probs=58.6
Q ss_pred ceehhhhhcCCcceeeeeeecCCccEEEEccccCCcccEEEEEec-CCceeEEEEec--ccCceeeeecCCCCCCCceEE
Q psy9278 11 QIICLVEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEIN-DGQPELVKTVE--KPNAFKCGTFNASPLSERYLA 87 (98)
Q Consensus 11 QIIehi~ksl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~-~~~l~~~~e~e--~~~~~KC~TFgaSsl~~r~lA 87 (98)
+|.++..+...=.+.-+.|=|.+-+++.-|+ +.-.|+||+++ .+..++..-+. ++++++-..| +...|+||
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg---~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAw---sp~g~~La 77 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPGKGVILASCG---TDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAW---SPHGRYLA 77 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccCCceEEEeec---CCceEEEEecCCCCcEEEEEeccccchheeeeeee---cCCCcEEE
Confidence 4444444444447888999999766554443 45589999998 55676665443 7888887754 44568999
Q ss_pred EeecCceEEeC
Q psy9278 88 TGDFEGKLQIW 98 (98)
Q Consensus 88 tGdf~G~L~iw 98 (98)
+|+||+...||
T Consensus 78 ~aSFD~t~~Iw 88 (312)
T KOG0645|consen 78 SASFDATVVIW 88 (312)
T ss_pred EeeccceEEEe
Confidence 99999999998
No 22
>KOG0294|consensus
Probab=95.46 E-value=0.027 Score=47.01 Aligned_cols=61 Identities=23% Similarity=0.543 Sum_probs=51.5
Q ss_pred eeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 27 CKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 27 ~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
++|-|++-+||++|. -.|.||+++.- ++..|+|.|.-+=|.||+..+ .|++|-=|+.+.+|
T Consensus 174 v~w~~~Gd~F~v~~~-----~~i~i~q~d~A--~v~~~i~~~~r~l~~~~l~~~----~L~vG~d~~~i~~~ 234 (362)
T KOG0294|consen 174 VSWSPQGDHFVVSGR-----NKIDIYQLDNA--SVFREIENPKRILCATFLDGS----ELLVGGDNEWISLK 234 (362)
T ss_pred eEEcCCCCEEEEEec-----cEEEEEecccH--hHhhhhhccccceeeeecCCc----eEEEecCCceEEEe
Confidence 999999999999983 46899998765 456788888999999998876 89999888887765
No 23
>KOG0277|consensus
Probab=95.45 E-value=0.026 Score=46.24 Aligned_cols=84 Identities=17% Similarity=0.382 Sum_probs=59.0
Q ss_pred cceehhhhhcCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEe
Q psy9278 10 PQIICLVEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATG 89 (98)
Q Consensus 10 PQIIehi~ksl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtG 89 (98)
+-|-|-..--.+=-+||+.|=|.-+..|+. +.|.|.||||.+....--+.+=-|+++-+--+-. +....|++.++
T Consensus 49 ~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~---a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdw--n~~~r~~~lts 123 (311)
T KOG0277|consen 49 KGIQECQSYDTEDGLFDVAWSENHENQVIA---ASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDW--NTVRRRIFLTS 123 (311)
T ss_pred CCeEEEEeeecccceeEeeecCCCcceEEE---EecCceEEEeccCCCCcchhHHHhhhhheEEecc--ccccceeEEee
Confidence 334444444445568999999999998865 5699999999987665444443444444433333 34457899999
Q ss_pred ecCceEEeC
Q psy9278 90 DFEGKLQIW 98 (98)
Q Consensus 90 df~G~L~iw 98 (98)
+.||.+.||
T Consensus 124 SWD~TiKLW 132 (311)
T KOG0277|consen 124 SWDGTIKLW 132 (311)
T ss_pred ccCCceEee
Confidence 999999999
No 24
>KOG2055|consensus
Probab=95.22 E-value=0.078 Score=46.01 Aligned_cols=72 Identities=22% Similarity=0.386 Sum_probs=58.3
Q ss_pred CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
++=.+=|..|--.|-++++.| |+|-+-||+|+.. .++...--..++ |+|=-+.|++.++||||+=.|-++||
T Consensus 343 ieG~v~~~~fsSdsk~l~~~~----~~GeV~v~nl~~~--~~~~rf~D~G~v-~gts~~~S~ng~ylA~GS~~GiVNIY 414 (514)
T KOG2055|consen 343 IEGVVSDFTFSSDSKELLASG----GTGEVYVWNLRQN--SCLHRFVDDGSV-HGTSLCISLNGSYLATGSDSGIVNIY 414 (514)
T ss_pred eccEEeeEEEecCCcEEEEEc----CCceEEEEecCCc--ceEEEEeecCcc-ceeeeeecCCCceEEeccCcceEEEe
Confidence 344567888999999999999 8997777887777 566666444444 88888999999999999999999987
No 25
>KOG0264|consensus
Probab=95.02 E-value=0.048 Score=46.41 Aligned_cols=74 Identities=22% Similarity=0.466 Sum_probs=60.3
Q ss_pred cCCcceeeeeeecCCcc-EEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEE
Q psy9278 19 SLDYQLFDCKWMPCSAK-FIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQ 96 (98)
Q Consensus 19 sl~yT~fD~kWIP~SAr-fV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~ 96 (98)
...=.+-|++|-|..+. |-.+| ..|.|.||.+..+..+..+..+ +...+-|..|...+ +--||||+=||.|.
T Consensus 225 ~h~~~VeDV~~h~~h~~lF~sv~----dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~--~~ilAT~S~D~tV~ 298 (422)
T KOG0264|consen 225 GHEDVVEDVAWHPLHEDLFGSVG----DDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFN--EFILATGSADKTVA 298 (422)
T ss_pred cCCcceehhhccccchhhheeec----CCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCC--CceEEeccCCCcEE
Confidence 44456889999999887 45566 7899999999866555555555 68999999997776 78899999999999
Q ss_pred eC
Q psy9278 97 IW 98 (98)
Q Consensus 97 iw 98 (98)
+|
T Consensus 299 Lw 300 (422)
T KOG0264|consen 299 LW 300 (422)
T ss_pred Ee
Confidence 98
No 26
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=94.98 E-value=0.14 Score=24.09 Aligned_cols=29 Identities=21% Similarity=0.595 Sum_probs=24.0
Q ss_pred ccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 67 KPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 67 ~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
+...+.|..|.... +.+++|..||.+.+|
T Consensus 11 ~~~~i~~~~~~~~~---~~~~~~~~d~~~~~~ 39 (40)
T smart00320 11 HTGPVTSVAFSPDG---KYLASASDDGTIKLW 39 (40)
T ss_pred cCCceeEEEECCCC---CEEEEecCCCeEEEc
Confidence 56678899886543 689999999999998
No 27
>KOG0318|consensus
Probab=94.80 E-value=0.095 Score=46.17 Aligned_cols=72 Identities=21% Similarity=0.367 Sum_probs=51.8
Q ss_pred CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCce-eEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQP-ELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l-~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
+-|.+=.+.==|. -.+|++|. -.|.++||.|++++| +..+..|++-++-|..|-.. ..+||+||..+++-+|
T Consensus 442 ~~y~~s~vAv~~~-~~~vaVGG---~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd---~~yla~~Da~rkvv~y 514 (603)
T KOG0318|consen 442 IGYESSAVAVSPD-GSEVAVGG---QDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPD---GAYLAAGDASRKVVLY 514 (603)
T ss_pred cccccceEEEcCC-CCEEEEec---ccceEEEEEecCCcccceeeeecccCCceEEEECCC---CcEEEEeccCCcEEEE
Confidence 3344433333333 35666762 257799999999985 44467889999999988544 5799999999999876
No 28
>KOG2106|consensus
Probab=94.70 E-value=0.16 Score=44.79 Aligned_cols=71 Identities=24% Similarity=0.433 Sum_probs=59.6
Q ss_pred cCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEE----ecccCceeeeecCCCCCCCceEEEeecCce
Q psy9278 19 SLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKT----VEKPNAFKCGTFNASPLSERYLATGDFEGK 94 (98)
Q Consensus 19 sl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e----~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~ 94 (98)
..|--+|.++|-|.-+.+++.= |+|-|..|.+.++.|..-.. -|| +-+-|.+|+.+. ...|||=+|+
T Consensus 198 ~sne~v~~a~FHPtd~nliit~----Gk~H~~Fw~~~~~~l~k~~~~fek~ek-k~Vl~v~F~eng----dviTgDS~G~ 268 (626)
T KOG2106|consen 198 TSNEVVFLATFHPTDPNLIITC----GKGHLYFWTLRGGSLVKRQGIFEKREK-KFVLCVTFLENG----DVITGDSGGN 268 (626)
T ss_pred eccceEEEEEeccCCCcEEEEe----CCceEEEEEccCCceEEEeeccccccc-eEEEEEEEcCCC----CEEeecCCce
Confidence 4566789999999999988765 89999999999998776552 345 778899997764 8999999999
Q ss_pred EEeC
Q psy9278 95 LQIW 98 (98)
Q Consensus 95 L~iw 98 (98)
|.||
T Consensus 269 i~Iw 272 (626)
T KOG2106|consen 269 ILIW 272 (626)
T ss_pred EEEE
Confidence 9999
No 29
>KOG0284|consensus
Probab=94.34 E-value=0.059 Score=46.23 Aligned_cols=77 Identities=10% Similarity=0.302 Sum_probs=59.5
Q ss_pred hhhh-hcCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecC
Q psy9278 14 CLVE-KSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFE 92 (98)
Q Consensus 14 ehi~-ksl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~ 92 (98)
+|.. ..+.--|++++|.|.-.|+++= ..+|.+.+|+...=..+.+.. +++.+++|-+.-.+ .+.+.+||=+
T Consensus 88 ~h~s~NKvkc~V~~v~WtPeGRRLltg----s~SGEFtLWNg~~fnFEtilQ-aHDs~Vr~m~ws~~---g~wmiSgD~g 159 (464)
T KOG0284|consen 88 VHTSSNKVKCPVNVVRWTPEGRRLLTG----SQSGEFTLWNGTSFNFETILQ-AHDSPVRTMKWSHN---GTWMISGDKG 159 (464)
T ss_pred EeccccccccceeeEEEcCCCceeEee----cccccEEEecCceeeHHHHhh-hhcccceeEEEccC---CCEEEEcCCC
Confidence 3444 4566778999999999998853 379999999974333333332 48999999988666 4799999999
Q ss_pred ceEEeC
Q psy9278 93 GKLQIW 98 (98)
Q Consensus 93 G~L~iw 98 (98)
|-+.+|
T Consensus 160 G~iKyW 165 (464)
T KOG0284|consen 160 GMIKYW 165 (464)
T ss_pred ceEEec
Confidence 999998
No 30
>KOG0315|consensus
Probab=94.01 E-value=0.076 Score=43.49 Aligned_cols=49 Identities=12% Similarity=0.459 Sum_probs=44.0
Q ss_pred CcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 45 GTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 45 gtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
-.|+++||+|.. +.+.++.+.+.++-|.---.+ +.+|..||-+|++.||
T Consensus 103 eDgt~kIWdlR~--~~~qR~~~~~spVn~vvlhpn---QteLis~dqsg~irvW 151 (311)
T KOG0315|consen 103 EDGTVKIWDLRS--LSCQRNYQHNSPVNTVVLHPN---QTELISGDQSGNIRVW 151 (311)
T ss_pred CCceEEEEeccC--cccchhccCCCCcceEEecCC---cceEEeecCCCcEEEE
Confidence 489999999987 899999999999999877555 6899999999999999
No 31
>KOG1274|consensus
Probab=93.61 E-value=0.21 Score=46.13 Aligned_cols=65 Identities=14% Similarity=0.418 Sum_probs=53.5
Q ss_pred eeeecCCccEEEEccccCCcccEEEEEecCCceeE-EEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 27 CKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPEL-VKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 27 ~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~-~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
..|=|.+-.|.+.+ -.+.+.+|.-++.++.- ++.-+....|-|.+|-.. -.+||+|+.+|.+.||
T Consensus 194 ~aW~Pk~g~la~~~----~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPn---G~YiAAs~~~g~I~vW 259 (933)
T KOG1274|consen 194 LAWHPKGGTLAVPP----VDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPN---GKYIAASTLDGQILVW 259 (933)
T ss_pred eeecCCCCeEEeec----cCCeEEEEccCCceeheeecccccccceEEEEEcCC---CcEEeeeccCCcEEEE
Confidence 57999999999888 78999999998887554 344445555999999665 3589999999999999
No 32
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=92.60 E-value=0.85 Score=32.39 Aligned_cols=66 Identities=14% Similarity=0.155 Sum_probs=41.9
Q ss_pred eeeeeeecCCcc-EEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEe-ecCceEEeC
Q psy9278 24 LFDCKWMPCSAK-FIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATG-DFEGKLQIW 98 (98)
Q Consensus 24 ~fD~kWIP~SAr-fV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtG-df~G~L~iw 98 (98)
+.++.|-|..-. |+..+ +.+.+.||+++.+++. ........+.|..|-+. ...|+++ ..+|.|.||
T Consensus 209 ~~~i~~s~dg~~~~~~~~----~~~~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~---g~~l~~~~~~~~~i~v~ 276 (300)
T TIGR03866 209 PVGIKLTKDGKTAFVALG----PANRVAVVDAKTYEVL--DYLLVGQRVWQLAFTPD---EKYLLTTNGVSNDVSVI 276 (300)
T ss_pred ccceEECCCCCEEEEEcC----CCCeEEEEECCCCcEE--EEEEeCCCcceEEECCC---CCEEEEEcCCCCeEEEE
Confidence 445666666654 33333 2457999999877654 33344556778887443 3456665 679999998
No 33
>KOG1587|consensus
Probab=91.97 E-value=0.58 Score=40.79 Aligned_cols=81 Identities=20% Similarity=0.333 Sum_probs=59.4
Q ss_pred hhhhcCCcceeeeeeecCCc---cEEE------------EccccCCc-ccEEEEEecCCceeEEEEecccCceeeeecCC
Q psy9278 15 LVEKSLDYQLFDCKWMPCSA---KFIV------------LGMKPKGT-GSIQMYEINDGQPELVKTVEKPNAFKCGTFNA 78 (98)
Q Consensus 15 hi~ksl~yT~fD~kWIP~SA---rfV~------------lG~~prgt-G~iqIyeL~~~~l~~~~e~e~~~~~KC~TFga 78 (98)
|..-+..-.++|++|-|... .+.+ .+..++-- +.+-||++... .+.-...+-+.++-|..|-.
T Consensus 174 ~~~~~~~~~~~~~~w~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~vW~~~~p-~~Pe~~~~~~s~v~~~~f~p 252 (555)
T KOG1587|consen 174 HDPLSPKRQVTDESWHPTGSVLIAVSVAYSELDFDRYAFNKPLLSEPDGVLLVWSLKNP-NTPELVLESPSEVTCLKFCP 252 (555)
T ss_pred ccccchhcceeeeeeccCCCcceEEEEeecccccccccccccccccCCceEEEEecCCC-CCceEEEecCCceeEEEecc
Confidence 34446677889999999988 2221 12222222 48999999777 66667777889999999944
Q ss_pred CCCCCceEEEeecCceEEeC
Q psy9278 79 SPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 79 Ssl~~r~lAtGdf~G~L~iw 98 (98)
. ..-.||.|.++|.+-+|
T Consensus 253 ~--~p~ll~gG~y~GqV~lW 270 (555)
T KOG1587|consen 253 F--DPNLLAGGCYNGQVVLW 270 (555)
T ss_pred C--CcceEEeeccCceEEEE
Confidence 4 46789999999999998
No 34
>KOG0269|consensus
Probab=91.91 E-value=0.12 Score=47.01 Aligned_cols=76 Identities=20% Similarity=0.340 Sum_probs=57.9
Q ss_pred hhcCCcceeeeeeecCCcc-EEEEccccCCcccEEEEEecC--CceeEEEEecccCceeeeecCCCCCCCceEEEeecCc
Q psy9278 17 EKSLDYQLFDCKWMPCSAK-FIVLGMKPKGTGSIQMYEIND--GQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEG 93 (98)
Q Consensus 17 ~ksl~yT~fD~kWIP~SAr-fV~lG~~prgtG~iqIyeL~~--~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G 93 (98)
..++.|+.-||||= +=++ +++ .....|+|.||+|++ .+-.+..=.|+.+++-|-.|-+. ....|.+|+-||
T Consensus 83 kqn~~~S~~DVkW~-~~~~NlIA---T~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~t--ep~iliSGSQDg 156 (839)
T KOG0269|consen 83 KQNKFYSAADVKWG-QLYSNLIA---TCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHST--EPNILISGSQDG 156 (839)
T ss_pred ccceeeehhhcccc-cchhhhhe---eecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccC--CccEEEecCCCc
Confidence 45788999999997 4333 332 234689999999999 34444456678889999999554 467899999999
Q ss_pred eEEeC
Q psy9278 94 KLQIW 98 (98)
Q Consensus 94 ~L~iw 98 (98)
.+.+|
T Consensus 157 ~vK~~ 161 (839)
T KOG0269|consen 157 TVKCW 161 (839)
T ss_pred eEEEE
Confidence 99988
No 35
>KOG0772|consensus
Probab=91.73 E-value=0.42 Score=42.43 Aligned_cols=75 Identities=21% Similarity=0.428 Sum_probs=54.6
Q ss_pred hhcCCcceeeeeeecCCc-cEEEEccccCCcccEEEEEecCCc--eeEEEEe---cccCceeeeecCCCCCCCceEEEee
Q psy9278 17 EKSLDYQLFDCKWMPCSA-KFIVLGMKPKGTGSIQMYEINDGQ--PELVKTV---EKPNAFKCGTFNASPLSERYLATGD 90 (98)
Q Consensus 17 ~ksl~yT~fD~kWIP~SA-rfV~lG~~prgtG~iqIyeL~~~~--l~~~~e~---e~~~~~KC~TFgaSsl~~r~lAtGd 90 (98)
.|...-++.+.-|=|.+. -|++.+ -.|.++||++++-+ +++++-. -+..+.--|+| +.-..+ ||+|-
T Consensus 264 TKGHia~lt~g~whP~~k~~FlT~s----~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~--nrdg~~-iAagc 336 (641)
T KOG0772|consen 264 TKGHIAELTCGCWHPDNKEEFLTCS----YDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAW--NRDGKL-IAAGC 336 (641)
T ss_pred cCCceeeeeccccccCcccceEEec----CCCcEEEEecCCchhheeEEeeccCCCcccCceeeec--CCCcch-hhhcc
Confidence 455666788999999875 466666 78999999998875 5555422 14445567777 333344 99999
Q ss_pred cCceEEeC
Q psy9278 91 FEGKLQIW 98 (98)
Q Consensus 91 f~G~L~iw 98 (98)
.||++++|
T Consensus 337 ~DGSIQ~W 344 (641)
T KOG0772|consen 337 LDGSIQIW 344 (641)
T ss_pred cCCceeee
Confidence 99999999
No 36
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=91.46 E-value=2 Score=29.72 Aligned_cols=71 Identities=17% Similarity=0.398 Sum_probs=48.2
Q ss_pred cceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 22 YQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 22 yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
..+.+++|.|.... ++.+.. ..|.+++|++..++....-.. +...+.|..|- ......+++++.||.+.+|
T Consensus 156 ~~v~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~--~~~~~~~~~~~~d~~i~~w 226 (466)
T COG2319 156 ESVTSLAFSPDGKL-LASGSS--LDGTIKLWDLRTGKPLSTLAG-HTDPVSSLAFS--PDGGLLIASGSSDGTIRLW 226 (466)
T ss_pred ccEEEEEECCCCCE-EEecCC--CCCceEEEEcCCCceEEeecc-CCCceEEEEEc--CCcceEEEEecCCCcEEEE
Confidence 34558999999884 444433 799999999987443333322 67788899887 2122345555999999887
No 37
>KOG0269|consensus
Probab=91.44 E-value=0.26 Score=44.96 Aligned_cols=69 Identities=22% Similarity=0.460 Sum_probs=53.9
Q ss_pred ceeeeeeecCCc-cEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 23 QLFDCKWMPCSA-KFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 23 T~fD~kWIP~SA-rfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
.+=||||.|.-- +|+.. --.|++|.|+|.+.+.=..+-.-+-.++=|+..-. ..-.||||.-|+.+.||
T Consensus 178 SiRDV~fsp~~~~~F~s~----~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhP---nr~~lATGGRDK~vkiW 247 (839)
T KOG0269|consen 178 SIRDVKFSPGYGNKFASI----HDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHP---NREWLATGGRDKMVKIW 247 (839)
T ss_pred hhhceeeccCCCceEEEe----cCCceEEEeeccCchhHHHHhhcccCceEEEeecC---CCceeeecCCCccEEEE
Confidence 356999999874 44433 36899999999988655555555778899998766 35689999999999999
No 38
>KOG0272|consensus
Probab=90.96 E-value=0.34 Score=41.70 Aligned_cols=61 Identities=13% Similarity=0.360 Sum_probs=45.4
Q ss_pred ceeeeeeecCCccEEEEccccCCcccEEEEEecCCce-e-------EEEEecccCceeeeecCCCCCCCceEEEeecCce
Q psy9278 23 QLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQP-E-------LVKTVEKPNAFKCGTFNASPLSERYLATGDFEGK 94 (98)
Q Consensus 23 T~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l-~-------~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~ 94 (98)
.+|++.|-|.---+.+-| +.+.++||.|...+. . +|+.+.... -| .+.|+|++||+.
T Consensus 347 ~I~~V~fsPNGy~lATgs----~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p--~~---------g~fL~TasyD~t 411 (459)
T KOG0272|consen 347 EILSVAFSPNGYHLATGS----SDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSP--QE---------GYFLVTASYDNT 411 (459)
T ss_pred ceeeEeECCCceEEeecC----CCCcEEEeeecccccceecccccchhhheEecc--cC---------CeEEEEcccCcc
Confidence 589999999998888776 789999999987643 2 222222111 23 357999999999
Q ss_pred EEeC
Q psy9278 95 LQIW 98 (98)
Q Consensus 95 L~iw 98 (98)
+.||
T Consensus 412 ~kiW 415 (459)
T KOG0272|consen 412 VKIW 415 (459)
T ss_pred eeee
Confidence 9999
No 39
>KOG1036|consensus
Probab=90.84 E-value=0.69 Score=38.35 Aligned_cols=66 Identities=18% Similarity=0.381 Sum_probs=51.4
Q ss_pred ceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 23 QLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 23 T~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
++=++|..|.|..+++-- =.|.+.+|+....++ ..+..+..|+=||.|-. +-++++|+.||.++.+
T Consensus 15 ~IS~v~f~~~~~~LLvss----WDgslrlYdv~~~~l--~~~~~~~~plL~c~F~d----~~~~~~G~~dg~vr~~ 80 (323)
T KOG1036|consen 15 GISSVKFSPSSSDLLVSS----WDGSLRLYDVPANSL--KLKFKHGAPLLDCAFAD----ESTIVTGGLDGQVRRY 80 (323)
T ss_pred ceeeEEEcCcCCcEEEEe----ccCcEEEEeccchhh--hhheecCCceeeeeccC----CceEEEeccCceEEEE
Confidence 345688888777766533 689999999988844 44666788899999976 4489999999999753
No 40
>KOG0283|consensus
Probab=90.28 E-value=0.44 Score=42.99 Aligned_cols=47 Identities=23% Similarity=0.690 Sum_probs=39.3
Q ss_pred cEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 48 SIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 48 ~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
++++|.+. .=++++-..++.=+-|.-|-.-. +|+|+.|++||+++||
T Consensus 391 TVRLWh~~--~~~CL~~F~HndfVTcVaFnPvD--DryFiSGSLD~KvRiW 437 (712)
T KOG0283|consen 391 TVRLWHPG--RKECLKVFSHNDFVTCVAFNPVD--DRYFISGSLDGKVRLW 437 (712)
T ss_pred cEEeecCC--CcceeeEEecCCeeEEEEecccC--CCcEeecccccceEEe
Confidence 56778775 44577778899999999996555 9999999999999999
No 41
>KOG0273|consensus
Probab=89.82 E-value=1.5 Score=38.45 Aligned_cols=68 Identities=22% Similarity=0.628 Sum_probs=38.4
Q ss_pred cceeeeeeecCCc---------cEEEEccccCCcccEEEEEecCCceeEEEEe-cccCceeeeecCCCCCCCceEEEeec
Q psy9278 22 YQLFDCKWMPCSA---------KFIVLGMKPKGTGSIQMYEINDGQPELVKTV-EKPNAFKCGTFNASPLSERYLATGDF 91 (98)
Q Consensus 22 yT~fD~kWIP~SA---------rfV~lG~~prgtG~iqIyeL~~~~l~~~~e~-e~~~~~KC~TFgaSsl~~r~lAtGdf 91 (98)
=.+|-.||.|.-. .++..+ -.+.+++|+...|.- +..+ .+..++--..|-. .-|+||+|+|
T Consensus 402 kei~t~~wsp~g~v~~n~~~~~~l~sas----~dstV~lwdv~~gv~--i~~f~kH~~pVysvafS~---~g~ylAsGs~ 472 (524)
T KOG0273|consen 402 KEIYTIKWSPTGPVTSNPNMNLMLASAS----FDSTVKLWDVESGVP--IHTLMKHQEPVYSVAFSP---NGRYLASGSL 472 (524)
T ss_pred cceeeEeecCCCCccCCCcCCceEEEee----cCCeEEEEEccCCce--eEeeccCCCceEEEEecC---CCcEEEecCC
Confidence 3478889999642 111111 245555555544421 1112 2333443344433 3689999999
Q ss_pred CceEEeC
Q psy9278 92 EGKLQIW 98 (98)
Q Consensus 92 ~G~L~iw 98 (98)
||.+.||
T Consensus 473 dg~V~iw 479 (524)
T KOG0273|consen 473 DGCVHIW 479 (524)
T ss_pred CCeeEec
Confidence 9999999
No 42
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=89.59 E-value=2.4 Score=30.03 Aligned_cols=69 Identities=9% Similarity=0.044 Sum_probs=42.6
Q ss_pred ceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 23 QLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 23 T~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
.+..+.|-|....+++.+. ..|.|.+|++..+++. .++.......+..| +.-.++-++++..+|.|.+|
T Consensus 32 ~~~~l~~~~dg~~l~~~~~---~~~~v~~~d~~~~~~~--~~~~~~~~~~~~~~--~~~g~~l~~~~~~~~~l~~~ 100 (300)
T TIGR03866 32 RPRGITLSKDGKLLYVCAS---DSDTIQVIDLATGEVI--GTLPSGPDPELFAL--HPNGKILYIANEDDNLVTVI 100 (300)
T ss_pred CCCceEECCCCCEEEEEEC---CCCeEEEEECCCCcEE--EeccCCCCccEEEE--CCCCCEEEEEcCCCCeEEEE
Confidence 3567889998877666653 5788999999887653 33332222334444 22223334556678888876
No 43
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=87.68 E-value=1.4 Score=23.22 Aligned_cols=30 Identities=13% Similarity=0.315 Sum_probs=23.0
Q ss_pred CCcceeeeeeecCCccEEEEccccCCcccEEEEE
Q psy9278 20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYE 53 (98)
Q Consensus 20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIye 53 (98)
-.-.++++.|-|....|++.| ..|.|+||+
T Consensus 10 h~~~i~~i~~~~~~~~~~s~~----~D~~i~vwd 39 (39)
T PF00400_consen 10 HSSSINSIAWSPDGNFLASGS----SDGTIRVWD 39 (39)
T ss_dssp SSSSEEEEEEETTSSEEEEEE----TTSEEEEEE
T ss_pred CCCcEEEEEEecccccceeeC----CCCEEEEEC
Confidence 345689999999966666666 678888885
No 44
>KOG0284|consensus
Probab=87.48 E-value=0.57 Score=40.37 Aligned_cols=77 Identities=17% Similarity=0.364 Sum_probs=61.4
Q ss_pred hhhhhcCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCc
Q psy9278 14 CLVEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEG 93 (98)
Q Consensus 14 ehi~ksl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G 93 (98)
|-|.+..++-|=-.+|-+..- +.+-| .+-|.|++|+.+-+.++.++-- +.-+|+|..|... +-.++|-+=||
T Consensus 131 EtilQaHDs~Vr~m~ws~~g~-wmiSg---D~gG~iKyWqpnmnnVk~~~ah-h~eaIRdlafSpn---DskF~t~SdDg 202 (464)
T KOG0284|consen 131 ETILQAHDSPVRTMKWSHNGT-WMISG---DKGGMIKYWQPNMNNVKIIQAH-HAEAIRDLAFSPN---DSKFLTCSDDG 202 (464)
T ss_pred HHHhhhhcccceeEEEccCCC-EEEEc---CCCceEEecccchhhhHHhhHh-hhhhhheeccCCC---CceeEEecCCC
Confidence 556777788888899998765 45544 6789999999998877666544 4568999999774 56899999999
Q ss_pred eEEeC
Q psy9278 94 KLQIW 98 (98)
Q Consensus 94 ~L~iw 98 (98)
.|.||
T Consensus 203 ~ikiW 207 (464)
T KOG0284|consen 203 TIKIW 207 (464)
T ss_pred eEEEE
Confidence 99998
No 45
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=87.26 E-value=7.1 Score=27.03 Aligned_cols=71 Identities=15% Similarity=0.440 Sum_probs=44.9
Q ss_pred CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
.+..+.++.|.|... +++++ ....|.|.+|+++.+++... ..+ +.... -..|-... ..++++..++.+.+|
T Consensus 197 ~~~~v~~~~~~~~~~-~~~~~--~~~d~~i~~wd~~~~~~~~~-~~~~~~~~~-~~~~~~~~---~~~~~~~~d~~~~~~ 268 (466)
T COG2319 197 HTDPVSSLAFSPDGG-LLIAS--GSSDGTIRLWDLSTGKLLRS-TLSGHSDSV-VSSFSPDG---SLLASGSSDGTIRLW 268 (466)
T ss_pred CCCceEEEEEcCCcc-eEEEE--ecCCCcEEEEECCCCcEEee-ecCCCCcce-eEeECCCC---CEEEEecCCCcEEEe
Confidence 456789999997776 45555 55678888997764443332 222 22221 22343332 578899999999987
No 46
>KOG2445|consensus
Probab=86.88 E-value=4.6 Score=33.99 Aligned_cols=70 Identities=7% Similarity=0.212 Sum_probs=52.4
Q ss_pred eeeeeeecCCccEEEEccccCCcccEEEEEecCC--ceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 24 LFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDG--QPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 24 ~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~--~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
++|+-|=+---|.++.- ..+.+.||+++++ +-.+.++.+ +..+|==.+......+ +-+||-+||+.+.||
T Consensus 16 ihdVs~D~~GRRmAtCS----sDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfG-qvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 16 IHDVSFDFYGRRMATCS----SDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFG-QVVATCSYDRTVSIW 88 (361)
T ss_pred eeeeeecccCceeeecc----CCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCcccc-ceEEEEecCCceeee
Confidence 67788878777877765 6889999998554 677777776 5555555555544444 489999999999999
No 47
>KOG1407|consensus
Probab=86.79 E-value=3 Score=34.49 Aligned_cols=72 Identities=21% Similarity=0.572 Sum_probs=57.3
Q ss_pred hcCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEE
Q psy9278 18 KSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQ 96 (98)
Q Consensus 18 ksl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~ 96 (98)
...+|-+..+-|= .+-.+..+ .+|-|.++|.+-- +|+-+..+. +|..-=|..|..- .|+||||+=|--.+
T Consensus 144 ~~~~~e~ne~~w~-~~nd~Ffl---t~GlG~v~ILsyp--sLkpv~si~AH~snCicI~f~p~---GryfA~GsADAlvS 214 (313)
T KOG1407|consen 144 EQFKFEVNEISWN-NSNDLFFL---TNGLGCVEILSYP--SLKPVQSIKAHPSNCICIEFDPD---GRYFATGSADALVS 214 (313)
T ss_pred hcccceeeeeeec-CCCCEEEE---ecCCceEEEEecc--ccccccccccCCcceEEEEECCC---CceEeeccccceee
Confidence 3456777778887 66665554 3689999997765 899999887 7777789999766 59999999999999
Q ss_pred eC
Q psy9278 97 IW 98 (98)
Q Consensus 97 iw 98 (98)
+|
T Consensus 215 LW 216 (313)
T KOG1407|consen 215 LW 216 (313)
T ss_pred cc
Confidence 98
No 48
>KOG0271|consensus
Probab=85.59 E-value=2.5 Score=36.59 Aligned_cols=60 Identities=12% Similarity=0.354 Sum_probs=46.4
Q ss_pred ecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 30 MPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 30 IP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
+|.+.|++.-+ +.|.+.||+++.+.....- .-+..++-|.-.|.. -.|++|+.|+.+.+|
T Consensus 214 ~p~~r~las~s----kDg~vrIWd~~~~~~~~~l-sgHT~~VTCvrwGG~----gliySgS~DrtIkvw 273 (480)
T KOG0271|consen 214 VPPCRRLASSS----KDGSVRIWDTKLGTCVRTL-SGHTASVTCVRWGGE----GLIYSGSQDRTIKVW 273 (480)
T ss_pred CCCccceeccc----CCCCEEEEEccCceEEEEe-ccCccceEEEEEcCC----ceEEecCCCceEEEE
Confidence 35666776444 7999999999887644332 348899999988864 479999999999998
No 49
>smart00461 WH1 WASP homology region 1. Region of the Wiskott-Aldrich syndrome protein (WASp) that contains point mutations in the majority of patients with WAS. Unknown function. Ena-like WH1 domains bind polyproline-containing peptides, and that Homer contains a WH1 domain.
Probab=85.42 E-value=2.2 Score=29.09 Aligned_cols=50 Identities=20% Similarity=0.266 Sum_probs=36.5
Q ss_pred cceeeeeeecCCcc-EEEEcc-ccCCcccEEEEEecCCceeEEEEecccCcee
Q psy9278 22 YQLFDCKWMPCSAK-FIVLGM-KPKGTGSIQMYEINDGQPELVKTVEKPNAFK 72 (98)
Q Consensus 22 yT~fD~kWIP~SAr-fV~lG~-~prgtG~iqIyeL~~~~l~~~~e~e~~~~~K 72 (98)
|....-+|+|...- .+++.. ++..+..++|+.+..+. +++=|.|-..+|+
T Consensus 16 y~~~~~~W~~~~~gg~~~~~~~~~~~~~~~ri~~~~~~~-~vv~e~ely~~~~ 67 (106)
T smart00461 16 YDADTKKWVPTGEGGAANLVIDKNQRSYFFRIVGIKGQD-KVIWNQELYKNFK 67 (106)
T ss_pred EeCCCCCeEECCCCCEEEEEEEecCCeEEEEEEEecCCC-eEEEEEeccCCCE
Confidence 44444479997777 777766 57889999999999885 6666666555554
No 50
>KOG0280|consensus
Probab=84.82 E-value=1.6 Score=36.43 Aligned_cols=20 Identities=30% Similarity=0.674 Sum_probs=16.4
Q ss_pred CCCCCceEEEeecCceEEeC
Q psy9278 79 SPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 79 Ssl~~r~lAtGdf~G~L~iw 98 (98)
|......+|||++|-.|++|
T Consensus 219 s~~~~~~I~TGsYDe~i~~~ 238 (339)
T KOG0280|consen 219 SPPKPTYIATGSYDECIRVL 238 (339)
T ss_pred CCCCCceEEEeccccceeee
Confidence 44456799999999999987
No 51
>KOG2445|consensus
Probab=84.70 E-value=2.3 Score=35.78 Aligned_cols=66 Identities=26% Similarity=0.411 Sum_probs=51.6
Q ss_pred ceeeeeeecC--CccEEEEccccCCcccEEEEEecCC----ceeEEEEec--------ccCceeeeecCCCCCCCceEEE
Q psy9278 23 QLFDCKWMPC--SAKFIVLGMKPKGTGSIQMYEINDG----QPELVKTVE--------KPNAFKCGTFNASPLSERYLAT 88 (98)
Q Consensus 23 T~fD~kWIP~--SArfV~lG~~prgtG~iqIyeL~~~----~l~~~~e~e--------~~~~~KC~TFgaSsl~~r~lAt 88 (98)
.|+|++.-|. +-++++++ ..|+|+|||.-+- .-+|+.|+. ...+--|.+.-.|...+..||.
T Consensus 114 sV~DV~FaP~hlGLklA~~~----aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAv 189 (361)
T KOG2445|consen 114 SVTDVKFAPKHLGLKLAAAS----ADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAV 189 (361)
T ss_pred ceeEEEecchhcceEEEEec----cCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEE
Confidence 5788888885 45666666 8999999997443 456777877 5666779999988888999999
Q ss_pred eecC
Q psy9278 89 GDFE 92 (98)
Q Consensus 89 Gdf~ 92 (98)
|.-+
T Consensus 190 gs~e 193 (361)
T KOG2445|consen 190 GSDE 193 (361)
T ss_pred Eccc
Confidence 9876
No 52
>KOG2048|consensus
Probab=84.56 E-value=2.3 Score=38.44 Aligned_cols=66 Identities=20% Similarity=0.507 Sum_probs=42.5
Q ss_pred CccEEEEccccCC--------cccEEEEEecCCc-eeEEE-EecccC-ceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 33 SAKFIVLGMKPKG--------TGSIQMYEINDGQ-PELVK-TVEKPN-AFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 33 SArfV~lG~~prg--------tG~iqIyeL~~~~-l~~~~-e~e~~~-~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
.+|.+.|--.|.| .|+|+||+...+. +.++. .+.+-+ +=+|+-.+--.|+.-.||+||=.|.++.|
T Consensus 154 ~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FW 230 (691)
T KOG2048|consen 154 KSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFW 230 (691)
T ss_pred cceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEE
Confidence 4444444444444 4899999997774 44221 222211 13466666666777899999999999998
No 53
>KOG0281|consensus
Probab=84.17 E-value=0.59 Score=40.15 Aligned_cols=55 Identities=22% Similarity=0.705 Sum_probs=40.8
Q ss_pred ccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 34 AKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 34 ArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
-||||-|+. ...|++|+++-|.+ +.-.| +..-++|.-|- +..+..|.+||++.||
T Consensus 370 ~rlvVSGSS---DntIRlwdi~~G~c--LRvLeGHEeLvRciRFd-----~krIVSGaYDGkikvW 425 (499)
T KOG0281|consen 370 DRLVVSGSS---DNTIRLWDIECGAC--LRVLEGHEELVRCIRFD-----NKRIVSGAYDGKIKVW 425 (499)
T ss_pred CeEEEecCC---CceEEEEeccccHH--HHHHhchHHhhhheeec-----CceeeeccccceEEEE
Confidence 478888854 55799999988863 22233 45567888884 4579999999999999
No 54
>KOG0289|consensus
Probab=83.95 E-value=2.4 Score=36.94 Aligned_cols=48 Identities=19% Similarity=0.475 Sum_probs=40.6
Q ss_pred cccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 46 TGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 46 tG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
.|.++||+|..+. -+..+. +..++|-..|+-+- +.|||+.=||.+.+|
T Consensus 368 d~~vkiwdlks~~--~~a~Fpght~~vk~i~FsENG---Y~Lat~add~~V~lw 416 (506)
T KOG0289|consen 368 DGVVKIWDLKSQT--NVAKFPGHTGPVKAISFSENG---YWLATAADDGSVKLW 416 (506)
T ss_pred CceEEEEEcCCcc--ccccCCCCCCceeEEEeccCc---eEEEEEecCCeEEEE
Confidence 7899999998887 344444 88899999998874 899999999999988
No 55
>KOG0274|consensus
Probab=83.70 E-value=3.2 Score=35.82 Aligned_cols=56 Identities=13% Similarity=0.396 Sum_probs=45.4
Q ss_pred ccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 34 AKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 34 ArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
-.++|.|+. .|.|.||... ..++++.++ +...++|-.|+.. -++..|..|+.+++|
T Consensus 341 ~~~lvsgs~---d~~v~VW~~~--~~~cl~sl~gH~~~V~sl~~~~~----~~~~Sgs~D~~IkvW 397 (537)
T KOG0274|consen 341 EPLLVSGSY---DGTVKVWDPR--TGKCLKSLSGHTGRVYSLIVDSE----NRLLSGSLDTTIKVW 397 (537)
T ss_pred CCEEEEEec---CceEEEEEhh--hceeeeeecCCcceEEEEEecCc----ceEEeeeeccceEee
Confidence 445556643 4599999999 777788777 8889999999885 379999999999998
No 56
>KOG0263|consensus
Probab=83.66 E-value=1.7 Score=39.34 Aligned_cols=73 Identities=18% Similarity=0.423 Sum_probs=58.5
Q ss_pred hcCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEe
Q psy9278 18 KSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQI 97 (98)
Q Consensus 18 ksl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~i 97 (98)
+..+|-+.|++--|..-.|+..| +.++-++|.-+...- +--..-+-.-+.|..|+.++ .++|||+-|-.+++
T Consensus 490 ~GH~~PVwdV~F~P~GyYFatas----~D~tArLWs~d~~~P-lRifaghlsDV~cv~FHPNs---~Y~aTGSsD~tVRl 561 (707)
T KOG0263|consen 490 KGHLAPVWDVQFAPRGYYFATAS----HDQTARLWSTDHNKP-LRIFAGHLSDVDCVSFHPNS---NYVATGSSDRTVRL 561 (707)
T ss_pred cCCCcceeeEEecCCceEEEecC----CCceeeeeecccCCc-hhhhcccccccceEEECCcc---cccccCCCCceEEE
Confidence 46678899999999999999886 788889999876421 11123355678999999996 79999999999999
Q ss_pred C
Q psy9278 98 W 98 (98)
Q Consensus 98 w 98 (98)
|
T Consensus 562 W 562 (707)
T KOG0263|consen 562 W 562 (707)
T ss_pred E
Confidence 8
No 57
>KOG0973|consensus
Probab=83.60 E-value=3 Score=38.95 Aligned_cols=70 Identities=19% Similarity=0.428 Sum_probs=59.0
Q ss_pred CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
.+-++-|+.|=|.++=+|.+| -.+.+-||+...- ++++-++ +...+|=.||=.. -++||+=..|..|.||
T Consensus 128 H~~DV~Dv~Wsp~~~~lvS~s----~DnsViiwn~~tF--~~~~vl~~H~s~VKGvs~DP~---Gky~ASqsdDrtikvw 198 (942)
T KOG0973|consen 128 HDSDVLDVNWSPDDSLLVSVS----LDNSVIIWNAKTF--ELLKVLRGHQSLVKGVSWDPI---GKYFASQSDDRTLKVW 198 (942)
T ss_pred CCCccceeccCCCccEEEEec----ccceEEEEccccc--eeeeeeecccccccceEECCc---cCeeeeecCCceEEEE
Confidence 456788999999998888888 7889999987666 7777777 7778899999665 4899999999999998
No 58
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=83.41 E-value=2.8 Score=36.95 Aligned_cols=64 Identities=17% Similarity=0.226 Sum_probs=50.1
Q ss_pred CCccEEEEccccCCcccE----EEEEecCCceeEEEEe--cccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 32 CSAKFIVLGMKPKGTGSI----QMYEINDGQPELVKTV--EKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 32 ~SArfV~lG~~prgtG~i----qIyeL~~~~l~~~~e~--e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
+..-+-+|.++...+|.. -|||+.+++++.++.. .-+..+.|+.+..+ +..|+.|--||.|.+|
T Consensus 217 ~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~---E~kLvlGC~DgSiiLy 286 (545)
T PF11768_consen 217 QPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPS---EDKLVLGCEDGSIILY 286 (545)
T ss_pred CCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcc---cceEEEEecCCeEEEE
Confidence 344456777777666654 5899999999988754 47778999988665 6799999999999886
No 59
>KOG0772|consensus
Probab=82.64 E-value=1.6 Score=38.91 Aligned_cols=69 Identities=22% Similarity=0.426 Sum_probs=48.4
Q ss_pred ceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec--c--cCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 23 QLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE--K--PNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 23 T~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e--~--~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
-|=.|.|=|.--.|. -| =..|.||||++-.-.+...--+. + -..|-|.+|-.- -+.|++=.||+.|.+|
T Consensus 319 ~~tsC~~nrdg~~iA-ag---c~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~d---g~~LlSRg~D~tLKvW 391 (641)
T KOG0772|consen 319 PVTSCAWNRDGKLIA-AG---CLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYD---GNYLLSRGFDDTLKVW 391 (641)
T ss_pred CceeeecCCCcchhh-hc---ccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccc---cchhhhccCCCceeee
Confidence 345678888776643 23 36899999998444444443333 2 248999999443 3689999999999999
No 60
>KOG1408|consensus
Probab=82.57 E-value=1.9 Score=40.05 Aligned_cols=28 Identities=25% Similarity=0.409 Sum_probs=20.4
Q ss_pred cCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 68 PNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 68 ~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
..+|+|.- -|..-.|||.||--|+|+||
T Consensus 459 r~G~R~~~---vSp~gqhLAsGDr~GnlrVy 486 (1080)
T KOG1408|consen 459 RFGFRALA---VSPDGQHLASGDRGGNLRVY 486 (1080)
T ss_pred ccceEEEE---ECCCcceecccCccCceEEE
Confidence 35566652 23445699999999999986
No 61
>KOG0316|consensus
Probab=82.48 E-value=2.9 Score=34.35 Aligned_cols=76 Identities=18% Similarity=0.412 Sum_probs=55.4
Q ss_pred hhhhhcCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecC
Q psy9278 14 CLVEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFE 92 (98)
Q Consensus 14 ehi~ksl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~ 92 (98)
-|-.++.-+-+-|..=.-.+++|...| |.-++++|+.+.|++ ++... +...+--.-|--++ .-+|.|+||
T Consensus 52 iktYsghG~EVlD~~~s~Dnskf~s~G----gDk~v~vwDV~TGkv--~Rr~rgH~aqVNtV~fNees---SVv~SgsfD 122 (307)
T KOG0316|consen 52 IKTYSGHGHEVLDAALSSDNSKFASCG----GDKAVQVWDVNTGKV--DRRFRGHLAQVNTVRFNEES---SVVASGSFD 122 (307)
T ss_pred eeeecCCCceeeeccccccccccccCC----CCceEEEEEcccCee--eeecccccceeeEEEecCcc---eEEEecccc
Confidence 344456667788888888999999999 889999999998853 23333 33333444454443 479999999
Q ss_pred ceEEeC
Q psy9278 93 GKLQIW 98 (98)
Q Consensus 93 G~L~iw 98 (98)
-+|++|
T Consensus 123 ~s~r~w 128 (307)
T KOG0316|consen 123 SSVRLW 128 (307)
T ss_pred ceeEEE
Confidence 999998
No 62
>KOG0275|consensus
Probab=82.33 E-value=0.49 Score=40.43 Aligned_cols=71 Identities=24% Similarity=0.380 Sum_probs=50.4
Q ss_pred eeeeeecCCccEEEEcccc---CCcccEEEEEecCCceeEEEEec-------ccCceeeeecCCCCCCCceEEEeecCce
Q psy9278 25 FDCKWMPCSAKFIVLGMKP---KGTGSIQMYEINDGQPELVKTVE-------KPNAFKCGTFNASPLSERYLATGDFEGK 94 (98)
Q Consensus 25 fD~kWIP~SArfV~lG~~p---rgtG~iqIyeL~~~~l~~~~e~e-------~~~~~KC~TFgaSsl~~r~lAtGdf~G~ 94 (98)
|..|=-|.+|||--=|++. .-.|-|+||+...|+|++--... .+.++.|..|---+ .-||+|+-||+
T Consensus 210 Fg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDs---EMlAsGsqDGk 286 (508)
T KOG0275|consen 210 FGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDS---EMLASGSQDGK 286 (508)
T ss_pred cccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccH---HHhhccCcCCc
Confidence 5556667777764333322 23799999999999776432211 57789999995443 57999999999
Q ss_pred EEeC
Q psy9278 95 LQIW 98 (98)
Q Consensus 95 L~iw 98 (98)
+.||
T Consensus 287 IKvW 290 (508)
T KOG0275|consen 287 IKVW 290 (508)
T ss_pred EEEE
Confidence 9999
No 63
>KOG0273|consensus
Probab=81.95 E-value=7 Score=34.39 Aligned_cols=70 Identities=19% Similarity=0.386 Sum_probs=53.2
Q ss_pred CCcce-eeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 20 LDYQL-FDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 20 l~yT~-fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
+.-++ -|+-|+-.. .||+.+ -.|+|.||.+....-.....= +.+.+-|.-|-.. .--||+.+-||.|.||
T Consensus 316 ~~s~~~lDVdW~~~~-~F~ts~----td~~i~V~kv~~~~P~~t~~G-H~g~V~alk~n~t---g~LLaS~SdD~TlkiW 386 (524)
T KOG0273|consen 316 FHSAPALDVDWQSND-EFATSS----TDGCIHVCKVGEDRPVKTFIG-HHGEVNALKWNPT---GSLLASCSDDGTLKIW 386 (524)
T ss_pred eccCCccceEEecCc-eEeecC----CCceEEEEEecCCCcceeeec-ccCceEEEEECCC---CceEEEecCCCeeEee
Confidence 33455 789999775 588655 789999999988765444333 8888888877433 3579999999999999
No 64
>KOG0299|consensus
Probab=81.92 E-value=3.9 Score=35.57 Aligned_cols=56 Identities=14% Similarity=0.469 Sum_probs=42.4
Q ss_pred ccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 34 AKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 34 ArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
-|.|++|.. ...+++|.+ -.+-+++..- ...+|-|+.|=.+ -||++|+=+|++-+|
T Consensus 298 eR~vtVGgr---DrT~rlwKi-~eesqlifrg-~~~sidcv~~In~----~HfvsGSdnG~IaLW 353 (479)
T KOG0299|consen 298 ERCVTVGGR---DRTVRLWKI-PEESQLIFRG-GEGSIDCVAFIND----EHFVSGSDNGSIALW 353 (479)
T ss_pred cceEEeccc---cceeEEEec-cccceeeeeC-CCCCeeeEEEecc----cceeeccCCceEEEe
Confidence 378888855 457899998 4455665543 3557899988544 599999999999998
No 65
>PRK01742 tolB translocation protein TolB; Provisional
Probab=81.61 E-value=6.4 Score=31.79 Aligned_cols=70 Identities=19% Similarity=0.331 Sum_probs=47.4
Q ss_pred ceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEe-ecCceEEeC
Q psy9278 23 QLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATG-DFEGKLQIW 98 (98)
Q Consensus 23 T~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtG-df~G~L~iw 98 (98)
-+.+.+|-|...+++.+. .-++...|.+|++..++.+.+...+... -...|- ...+.||.+ +-+|+..||
T Consensus 205 ~v~~p~wSPDG~~la~~s-~~~~~~~i~i~dl~tg~~~~l~~~~g~~--~~~~wS---PDG~~La~~~~~~g~~~Iy 275 (429)
T PRK01742 205 PLMSPAWSPDGSKLAYVS-FENKKSQLVVHDLRSGARKVVASFRGHN--GAPAFS---PDGSRLAFASSKDGVLNIY 275 (429)
T ss_pred ccccceEcCCCCEEEEEE-ecCCCcEEEEEeCCCCceEEEecCCCcc--CceeEC---CCCCEEEEEEecCCcEEEE
Confidence 467899999998887765 3345567999999998877776554222 123342 234567764 688888776
No 66
>PRK02889 tolB translocation protein TolB; Provisional
Probab=81.58 E-value=6.8 Score=31.69 Aligned_cols=70 Identities=16% Similarity=0.274 Sum_probs=45.9
Q ss_pred ceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEE-EeecCceEEeC
Q psy9278 23 QLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLA-TGDFEGKLQIW 98 (98)
Q Consensus 23 T~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lA-tGdf~G~L~iw 98 (98)
.+...+|-|...+++.+. .-++...|-+|+++.|+.+.+...+. ..-+..|- ...+.|| +.+-+|+..||
T Consensus 197 ~v~~p~wSPDG~~la~~s-~~~~~~~I~~~dl~~g~~~~l~~~~g--~~~~~~~S---PDG~~la~~~~~~g~~~Iy 267 (427)
T PRK02889 197 PIISPAWSPDGTKLAYVS-FESKKPVVYVHDLATGRRRVVANFKG--SNSAPAWS---PDGRTLAVALSRDGNSQIY 267 (427)
T ss_pred CcccceEcCCCCEEEEEE-ccCCCcEEEEEECCCCCEEEeecCCC--CccceEEC---CCCCEEEEEEccCCCceEE
Confidence 355779999997766654 44566779999999998877665432 22233342 2234666 56788887775
No 67
>KOG0290|consensus
Probab=81.42 E-value=2.8 Score=35.22 Aligned_cols=50 Identities=20% Similarity=0.436 Sum_probs=38.7
Q ss_pred ccceehhhhhcCCcceeeeeeecCCcc-EEEEccccCCcccEEEEEecCCc-eeEEEEecc
Q psy9278 9 KPQIICLVEKSLDYQLFDCKWMPCSAK-FIVLGMKPKGTGSIQMYEINDGQ-PELVKTVEK 67 (98)
Q Consensus 9 kPQIIehi~ksl~yT~fD~kWIP~SAr-fV~lG~~prgtG~iqIyeL~~~~-l~~~~e~e~ 67 (98)
|-|+|.|= =-|||+.|--.|+. |+.|| +.|.+++|.|..-+ =+.+.|-..
T Consensus 189 kTQLIAHD-----KEV~DIaf~~~s~~~FASvg----aDGSvRmFDLR~leHSTIIYE~p~ 240 (364)
T KOG0290|consen 189 KTQLIAHD-----KEVYDIAFLKGSRDVFASVG----ADGSVRMFDLRSLEHSTIIYEDPS 240 (364)
T ss_pred eeEEEecC-----cceeEEEeccCccceEEEec----CCCcEEEEEecccccceEEecCCC
Confidence 77999985 45999999988876 78899 89999999996654 344455433
No 68
>KOG0646|consensus
Probab=81.39 E-value=5.8 Score=34.55 Aligned_cols=69 Identities=20% Similarity=0.270 Sum_probs=53.1
Q ss_pred CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEe
Q psy9278 20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQI 97 (98)
Q Consensus 20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~i 97 (98)
|.-|=+-+--=|+.||+.+.+ -.-++++|+|+.| +|+..+-.|.+++|++- +..+|++-+|.=+|++.+
T Consensus 175 lsITDl~ig~Gg~~~rl~TaS----~D~t~k~wdlS~g--~LLlti~fp~si~av~l---Dpae~~~yiGt~~G~I~~ 243 (476)
T KOG0646|consen 175 LSITDLQIGSGGTNARLYTAS----EDRTIKLWDLSLG--VLLLTITFPSSIKAVAL---DPAERVVYIGTEEGKIFQ 243 (476)
T ss_pred ceeEEEEecCCCccceEEEec----CCceEEEEEeccc--eeeEEEecCCcceeEEE---cccccEEEecCCcceEEe
Confidence 333334444445788888777 5678999999999 56777889999999976 555899999999998765
No 69
>KOG0264|consensus
Probab=80.02 E-value=8.7 Score=33.02 Aligned_cols=84 Identities=12% Similarity=0.216 Sum_probs=65.6
Q ss_pred CCccceehhhhhcCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceE
Q psy9278 7 LDKPQIICLVEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYL 86 (98)
Q Consensus 7 ~~kPQIIehi~ksl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~l 86 (98)
.++||..+.. ..--++.+.|=|-+.-+++.|+ ..|.+.+|.|.+=...+..--.+...+=|.+|-... +.-|
T Consensus 261 ~~~~~~~~~a---h~~~vn~~~fnp~~~~ilAT~S---~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~--etvL 332 (422)
T KOG0264|consen 261 TSKPSHSVKA---HSAEVNCVAFNPFNEFILATGS---ADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHN--ETVL 332 (422)
T ss_pred CCCCcccccc---cCCceeEEEeCCCCCceEEecc---CCCcEEEeechhcccCceeccCCCcceEEEEeCCCC--Ccee
Confidence 4555544444 3445677788888888888874 478999999988888777766688899999995554 7789
Q ss_pred EEeecCceEEeC
Q psy9278 87 ATGDFEGKLQIW 98 (98)
Q Consensus 87 AtGdf~G~L~iw 98 (98)
|+..+||.|+||
T Consensus 333 ASSg~D~rl~vW 344 (422)
T KOG0264|consen 333 ASSGTDRRLNVW 344 (422)
T ss_pred EecccCCcEEEE
Confidence 999999999998
No 70
>KOG0271|consensus
Probab=79.94 E-value=3.9 Score=35.45 Aligned_cols=80 Identities=20% Similarity=0.284 Sum_probs=61.8
Q ss_pred hhhhcCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCC--CCCCCceEEEeecC
Q psy9278 15 LVEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNA--SPLSERYLATGDFE 92 (98)
Q Consensus 15 hi~ksl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFga--Ssl~~r~lAtGdf~ 92 (98)
|.-|....=|-.+.|-|.-.+++ -|+ -.|.|.+|+-..|+..--.=-.+.+.|-|-.|-. -...-|.||+++=|
T Consensus 151 ~t~KgH~~WVlcvawsPDgk~iA-SG~---~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skD 226 (480)
T KOG0271|consen 151 FTCKGHKNWVLCVAWSPDGKKIA-SGS---KDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKD 226 (480)
T ss_pred eeecCCccEEEEEEECCCcchhh-ccc---cCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCC
Confidence 55566777788889999866654 443 4799999998888765555556889999999943 34557899999999
Q ss_pred ceEEeC
Q psy9278 93 GKLQIW 98 (98)
Q Consensus 93 G~L~iw 98 (98)
|++.||
T Consensus 227 g~vrIW 232 (480)
T KOG0271|consen 227 GSVRIW 232 (480)
T ss_pred CCEEEE
Confidence 999999
No 71
>PRK05137 tolB translocation protein TolB; Provisional
Probab=79.41 E-value=8.9 Score=30.89 Aligned_cols=70 Identities=19% Similarity=0.322 Sum_probs=46.0
Q ss_pred ceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEE-EeecCceEEeC
Q psy9278 23 QLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLA-TGDFEGKLQIW 98 (98)
Q Consensus 23 T~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lA-tGdf~G~L~iw 98 (98)
.+...+|-|...+++.+. ..+|...|-+|++..|+.+.+...+. ..-...| |. ..++|| +.+.+|+..||
T Consensus 203 ~v~~p~wSpDG~~lay~s-~~~g~~~i~~~dl~~g~~~~l~~~~g--~~~~~~~--SP-DG~~la~~~~~~g~~~Iy 273 (435)
T PRK05137 203 LVLTPRFSPNRQEITYMS-YANGRPRVYLLDLETGQRELVGNFPG--MTFAPRF--SP-DGRKVVMSLSQGGNTDIY 273 (435)
T ss_pred CeEeeEECCCCCEEEEEE-ecCCCCEEEEEECCCCcEEEeecCCC--cccCcEE--CC-CCCEEEEEEecCCCceEE
Confidence 467899999987766654 55677899999999998877664432 2223333 22 234554 67777776665
No 72
>KOG0310|consensus
Probab=78.90 E-value=5.5 Score=34.79 Aligned_cols=65 Identities=12% Similarity=0.359 Sum_probs=50.6
Q ss_pred eeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 26 DCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 26 D~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
++--+|.-..|+..| --.++||+|..|.-.+..-..+-+.+-|--|+.++ +.|-+|.+||++.||
T Consensus 201 ~vl~lpsgs~iasAg-----Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~---~rLlS~sLD~~VKVf 265 (487)
T KOG0310|consen 201 SVLALPSGSLIASAG-----GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDS---TRLLSGSLDRHVKVF 265 (487)
T ss_pred eEEEcCCCCEEEEcC-----CCeEEEEEecCCceehhhhhcccceEEEEEeecCC---ceEeecccccceEEE
Confidence 445567767777666 34799999997766665555599999999998865 789999999999885
No 73
>KOG0313|consensus
Probab=78.90 E-value=1.8 Score=37.04 Aligned_cols=84 Identities=20% Similarity=0.446 Sum_probs=57.8
Q ss_pred cceehhhhhcCCcceeeeeeecCCccEEEEccccCCc--ccEEEEEecCC---ceeEEEEecccCceeeeec----CCCC
Q psy9278 10 PQIICLVEKSLDYQLFDCKWMPCSAKFIVLGMKPKGT--GSIQMYEINDG---QPELVKTVEKPNAFKCGTF----NASP 80 (98)
Q Consensus 10 PQIIehi~ksl~yT~fD~kWIP~SArfV~lG~~prgt--G~iqIyeL~~~---~l~~~~e~e~~~~~KC~TF----gaSs 80 (98)
-+|+.|+-++-|= -|=|.---|++-|+.-|.+ -.|.-+.++.- +++.+..++-|.+.-|-.= -+=.
T Consensus 38 s~ivN~ll~se~~-----~~K~~pFDFLi~gelLRtsL~e~l~~kgiSsE~~leIEYv~~~~aP~pl~~~~hdDWVSsv~ 112 (423)
T KOG0313|consen 38 SNIVNKLLKSENG-----FWKPVPFDFLIKGELLRTSLDEHLEEKGISSEEILEIEYVEAITAPKPLQCFLHDDWVSSVK 112 (423)
T ss_pred HHHHHHHHhccCC-----cCCCCcceEEEcceeeeccHHHHHHHcCcChhheeEEEEEEecCCCCccccccchhhhhhhc
Confidence 3566676666521 2444455589999999883 34555555444 6788888999999988532 0111
Q ss_pred CCCceEEEeecCceEEeC
Q psy9278 81 LSERYLATGDFEGKLQIW 98 (98)
Q Consensus 81 l~~r~lAtGdf~G~L~iw 98 (98)
...+++-||.|||.++||
T Consensus 113 ~~~~~IltgsYDg~~riW 130 (423)
T KOG0313|consen 113 GASKWILTGSYDGTSRIW 130 (423)
T ss_pred ccCceEEEeecCCeeEEE
Confidence 236899999999999998
No 74
>KOG0288|consensus
Probab=78.48 E-value=5.4 Score=34.55 Aligned_cols=59 Identities=22% Similarity=0.435 Sum_probs=48.7
Q ss_pred ccEEEEccccCCcccEEEEEecCCceeEEEEecccC-ceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 34 AKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPN-AFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 34 ArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~-~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
.++|+-|+ ..|.+.||++..++++.+-.....+ +|-|+.|-.+. ++|+..|=++...+|
T Consensus 399 ~~YvaAGS---~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG---~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 399 GSYVAAGS---ADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSG---SGLLSADKQKAVTLW 458 (459)
T ss_pred Cceeeecc---CCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCC---chhhcccCCcceEec
Confidence 35677774 5799999999999999988877777 89999997653 678888888888888
No 75
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=78.33 E-value=16 Score=27.79 Aligned_cols=64 Identities=16% Similarity=0.294 Sum_probs=36.5
Q ss_pred eecCCccEEEEccccCCcccEEEEEec-CCceeEEEEecccCceeeeecCCCCCCCceEEEeec-CceEEeC
Q psy9278 29 WMPCSAKFIVLGMKPKGTGSIQMYEIN-DGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDF-EGKLQIW 98 (98)
Q Consensus 29 WIP~SArfV~lG~~prgtG~iqIyeL~-~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf-~G~L~iw 98 (98)
+=|.. +++.+|..+ .+.|.+|+++ +++++.+.+++.+..---.+|- ...+.|.+.++ +|.+.+|
T Consensus 42 ~spd~-~~lyv~~~~--~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~---~~g~~l~v~~~~~~~v~v~ 107 (330)
T PRK11028 42 ISPDK-RHLYVGVRP--EFRVLSYRIADDGALTFAAESPLPGSPTHISTD---HQGRFLFSASYNANCVSVS 107 (330)
T ss_pred ECCCC-CEEEEEECC--CCcEEEEEECCCCceEEeeeecCCCCceEEEEC---CCCCEEEEEEcCCCeEEEE
Confidence 34544 555555543 4889999997 5678877776543222122332 22344555544 7777765
No 76
>KOG0301|consensus
Probab=78.30 E-value=7.8 Score=35.39 Aligned_cols=66 Identities=11% Similarity=0.300 Sum_probs=54.6
Q ss_pred CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccC-ceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPN-AFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~-~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
..-+|.+.=.+..--+|..| -.|.++||.-. ++++.++.|. ++=|++ .|.+-.+++|.=||.+.||
T Consensus 219 tn~vYsis~~~~~~~Ivs~g----EDrtlriW~~~----e~~q~I~lPttsiWsa~----~L~NgDIvvg~SDG~VrVf 285 (745)
T KOG0301|consen 219 TNFVYSISMALSDGLIVSTG----EDRTLRIWKKD----ECVQVITLPTTSIWSAK----VLLNGDIVVGGSDGRVRVF 285 (745)
T ss_pred ceEEEEEEecCCCCeEEEec----CCceEEEeecC----ceEEEEecCccceEEEE----EeeCCCEEEeccCceEEEE
Confidence 34567777888889999999 57999999865 8999999997 666654 4667799999999999997
No 77
>KOG0279|consensus
Probab=77.36 E-value=13 Score=30.91 Aligned_cols=68 Identities=12% Similarity=0.285 Sum_probs=54.1
Q ss_pred cceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 22 YQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 22 yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
..+-|+-=.|.+.-++..+ -.|.+++|+|..| +....++ +.+.+=|..|-+. +|.+.+|+-|-.|.+|
T Consensus 64 H~v~dv~~s~dg~~alS~s----wD~~lrlWDl~~g--~~t~~f~GH~~dVlsva~s~d---n~qivSGSrDkTiklw 132 (315)
T KOG0279|consen 64 HFVSDVVLSSDGNFALSAS----WDGTLRLWDLATG--ESTRRFVGHTKDVLSVAFSTD---NRQIVSGSRDKTIKLW 132 (315)
T ss_pred eEecceEEccCCceEEecc----ccceEEEEEecCC--cEEEEEEecCCceEEEEecCC---CceeecCCCcceeeee
Confidence 3556777778877777554 6899999999999 5555555 8888899988544 6999999999999998
No 78
>KOG1332|consensus
Probab=77.29 E-value=13 Score=30.71 Aligned_cols=60 Identities=17% Similarity=0.460 Sum_probs=42.2
Q ss_pred ccEEEEccccCCcccEEEEEecCC-ceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 34 AKFIVLGMKPKGTGSIQMYEINDG-QPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 34 ArfV~lG~~prgtG~iqIyeL~~~-~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
.|+++.+ ..|.|+|++...+ ..+++.|+. +.-|+==..|..-... .-||.-+|||++-||
T Consensus 24 krlATcs----SD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G-~iLAScsYDgkVIiW 85 (299)
T KOG1332|consen 24 KRLATCS----SDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFG-TILASCSYDGKVIIW 85 (299)
T ss_pred ceeeeec----CCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccC-cEeeEeecCceEEEE
Confidence 3666666 6899999999555 568998887 5555543444332222 269999999999998
No 79
>KOG0282|consensus
Probab=77.05 E-value=2.7 Score=36.71 Aligned_cols=68 Identities=16% Similarity=0.475 Sum_probs=49.4
Q ss_pred eeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 24 LFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 24 ~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
+--.+|.|-++.+++-|. -.|.|.||++-+ +=.+++..- +..++|=..|-- ..+.|-+++||+.|.+|
T Consensus 217 vsai~~fp~~~hLlLS~g---mD~~vklW~vy~-~~~~lrtf~gH~k~Vrd~~~s~---~g~~fLS~sfD~~lKlw 285 (503)
T KOG0282|consen 217 VSAIQWFPKKGHLLLSGG---MDGLVKLWNVYD-DRRCLRTFKGHRKPVRDASFNN---CGTSFLSASFDRFLKLW 285 (503)
T ss_pred cchhhhccceeeEEEecC---CCceEEEEEEec-Ccceehhhhcchhhhhhhhccc---cCCeeeeeecceeeeee
Confidence 345789999999998873 378999999976 334444333 666776665522 23578899999999998
No 80
>KOG1963|consensus
Probab=77.03 E-value=3.4 Score=37.92 Aligned_cols=47 Identities=28% Similarity=0.687 Sum_probs=32.0
Q ss_pred EEEEEecCC-ceeEEEEecccCce--eeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 49 IQMYEINDG-QPELVKTVEKPNAF--KCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 49 iqIyeL~~~-~l~~~~e~e~~~~~--KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
+.||..... +....+++-+.+.| +|-.|-+ .+|.+|+||-||++.||
T Consensus 183 ~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~sp---n~~~~Aa~d~dGrI~vw 232 (792)
T KOG1963|consen 183 IHIYFVPKHTKHTSSRDITVHHTFNITCVALSP---NERYLAAGDSDGRILVW 232 (792)
T ss_pred EEEEEecccceeeccchhhhhhcccceeEEecc---ccceEEEeccCCcEEEE
Confidence 345555443 33344455555555 8887644 48999999999999998
No 81
>KOG0274|consensus
Probab=75.77 E-value=7.6 Score=33.61 Aligned_cols=46 Identities=17% Similarity=0.712 Sum_probs=36.6
Q ss_pred cccEEEEEecCCc-eeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 46 TGSIQMYEINDGQ-PELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 46 tG~iqIyeL~~~~-l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
.-.+.||+++.+. |+++.. +..+++|.... +..|.+|.+||.+.||
T Consensus 310 D~tVkVW~v~n~~~l~l~~~--h~~~V~~v~~~-----~~~lvsgs~d~~v~VW 356 (537)
T KOG0274|consen 310 DNTVKVWDVTNGACLNLLRG--HTGPVNCVQLD-----EPLLVSGSYDGTVKVW 356 (537)
T ss_pred CceEEEEeccCcceEEEecc--ccccEEEEEec-----CCEEEEEecCceEEEE
Confidence 3468999998664 555544 88899999876 5589999999999998
No 82
>KOG0286|consensus
Probab=75.05 E-value=10 Score=31.74 Aligned_cols=70 Identities=16% Similarity=0.386 Sum_probs=51.1
Q ss_pred cceeeeeeec-----CCccEEEEccccCCcccEEEEEec----CCceeEEEEec-ccCceeeeecCCCCCCCceEEEeec
Q psy9278 22 YQLFDCKWMP-----CSAKFIVLGMKPKGTGSIQMYEIN----DGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDF 91 (98)
Q Consensus 22 yT~fD~kWIP-----~SArfV~lG~~prgtG~iqIyeL~----~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf 91 (98)
.-+-++.||= =|..||+.|.. ...-.||.|+ +|.+.+.+|+- +..=+-||.|=. +.||.||+=
T Consensus 92 aipl~s~WVMtCA~sPSg~~VAcGGL---dN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d----D~~ilT~SG 164 (343)
T KOG0286|consen 92 AIPLPSSWVMTCAYSPSGNFVACGGL---DNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD----DNHILTGSG 164 (343)
T ss_pred EEecCceeEEEEEECCCCCeEEecCc---CceeEEEecccccccccceeeeeecCccceeEEEEEcC----CCceEecCC
Confidence 3345667762 25688988844 4467899998 45677777777 555569999944 679999998
Q ss_pred CceEEeC
Q psy9278 92 EGKLQIW 98 (98)
Q Consensus 92 ~G~L~iw 98 (98)
|....+|
T Consensus 165 D~TCalW 171 (343)
T KOG0286|consen 165 DMTCALW 171 (343)
T ss_pred CceEEEE
Confidence 8887777
No 83
>KOG0296|consensus
Probab=74.47 E-value=12 Score=31.94 Aligned_cols=71 Identities=25% Similarity=0.564 Sum_probs=53.8
Q ss_pred cCCcceeeeee---ecCCccEEEEccccCCcccEEEEEecC-CceeEEEEecccCceeeeecCCCCCCCceEEEeecCce
Q psy9278 19 SLDYQLFDCKW---MPCSAKFIVLGMKPKGTGSIQMYEIND-GQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGK 94 (98)
Q Consensus 19 sl~yT~fD~kW---IP~SArfV~lG~~prgtG~iqIyeL~~-~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~ 94 (98)
+++|++-|.-| =| .|+++.-|+ ..|.+=.|++.. +..++.+= +..+.-||-|=.- -..++||.=||.
T Consensus 143 ~~~~e~~dieWl~WHp-~a~illAG~---~DGsvWmw~ip~~~~~kv~~G--h~~~ct~G~f~pd---GKr~~tgy~dgt 213 (399)
T KOG0296|consen 143 KLDQEVEDIEWLKWHP-RAHILLAGS---TDGSVWMWQIPSQALCKVMSG--HNSPCTCGEFIPD---GKRILTGYDDGT 213 (399)
T ss_pred EeecccCceEEEEecc-cccEEEeec---CCCcEEEEECCCcceeeEecC--CCCCcccccccCC---CceEEEEecCce
Confidence 45567767655 47 999999995 579999999988 44555444 6677788888433 346899999999
Q ss_pred EEeC
Q psy9278 95 LQIW 98 (98)
Q Consensus 95 L~iw 98 (98)
|.+|
T Consensus 214 i~~W 217 (399)
T KOG0296|consen 214 IIVW 217 (399)
T ss_pred EEEE
Confidence 9998
No 84
>KOG0272|consensus
Probab=74.35 E-value=11 Score=32.62 Aligned_cols=76 Identities=14% Similarity=0.256 Sum_probs=54.3
Q ss_pred hhhhcCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCce
Q psy9278 15 LVEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGK 94 (98)
Q Consensus 15 hi~ksl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~ 94 (98)
|.++...=-||++.|=|.-+= ++-|.. .-.=+||+|..|.-.++=+- +.+.|=-..|-++ -+|||||+=|+.
T Consensus 297 L~QEGHs~~v~~iaf~~DGSL-~~tGGl---D~~~RvWDlRtgr~im~L~g-H~k~I~~V~fsPN---Gy~lATgs~Dnt 368 (459)
T KOG0272|consen 297 LLQEGHSKGVFSIAFQPDGSL-AATGGL---DSLGRVWDLRTGRCIMFLAG-HIKEILSVAFSPN---GYHLATGSSDNT 368 (459)
T ss_pred HhhcccccccceeEecCCCce-eeccCc---cchhheeecccCcEEEEecc-cccceeeEeECCC---ceEEeecCCCCc
Confidence 455666677999999887654 444421 22337999988864444433 7777777778665 489999999999
Q ss_pred EEeC
Q psy9278 95 LQIW 98 (98)
Q Consensus 95 L~iw 98 (98)
..||
T Consensus 369 ~kVW 372 (459)
T KOG0272|consen 369 CKVW 372 (459)
T ss_pred EEEe
Confidence 9999
No 85
>KOG0315|consensus
Probab=74.34 E-value=7.1 Score=32.25 Aligned_cols=50 Identities=26% Similarity=0.596 Sum_probs=40.8
Q ss_pred cccEEEEEecCCceeEEEEeccc-CceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 46 TGSIQMYEINDGQPELVKTVEKP-NAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 46 tG~iqIyeL~~~~l~~~~e~e~~-~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
---|++|+|+.++-+-+..+|-+ +-+--..|.+. .|-+.||+=||...||
T Consensus 60 ~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~d---grWMyTgseDgt~kIW 110 (311)
T KOG0315|consen 60 NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCD---GRWMYTGSEDGTVKIW 110 (311)
T ss_pred CCeeEEEEccCCCCCceeEEeccCCceEEEEEeec---CeEEEecCCCceEEEE
Confidence 34599999999999888888855 55656666554 5999999999999999
No 86
>KOG0318|consensus
Probab=73.67 E-value=11 Score=33.76 Aligned_cols=70 Identities=24% Similarity=0.387 Sum_probs=57.9
Q ss_pred ceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCC-CCceEEEeecCceEEeC
Q psy9278 23 QLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPL-SERYLATGDFEGKLQIW 98 (98)
Q Consensus 23 T~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl-~~r~lAtGdf~G~L~iw 98 (98)
=|+++|.=|.-.||..+| +.|.+-||+=..| +++.|+|-..+-|=+-|+-|=+ ...+|||-+=|-...||
T Consensus 192 FV~~VRysPDG~~Fat~g----sDgki~iyDGktg--e~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIW 262 (603)
T KOG0318|consen 192 FVNCVRYSPDGSRFATAG----SDGKIYIYDGKTG--EKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIW 262 (603)
T ss_pred ceeeEEECCCCCeEEEec----CCccEEEEcCCCc--cEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEE
Confidence 578999999999999999 7788888875444 5678888788888888987744 45689999999999988
No 87
>KOG0647|consensus
Probab=73.55 E-value=3.8 Score=34.33 Aligned_cols=54 Identities=20% Similarity=0.476 Sum_probs=43.6
Q ss_pred CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCC
Q psy9278 21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASP 80 (98)
Q Consensus 21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSs 80 (98)
-|-|.+++--|.---||++| +.|++..|+= +.-+.+++.| .+.+|-||+|-.+-
T Consensus 251 VYaVNsi~FhP~hgtlvTaG----sDGtf~FWDk--dar~kLk~s~~~~qpItcc~fn~~G 305 (347)
T KOG0647|consen 251 VYAVNSIAFHPVHGTLVTAG----SDGTFSFWDK--DARTKLKTSETHPQPITCCSFNRNG 305 (347)
T ss_pred eEEecceEeecccceEEEec----CCceEEEecc--hhhhhhhccCcCCCccceeEecCCC
Confidence 48899999999999999999 8999999973 3334445544 89999999996653
No 88
>KOG1832|consensus
Probab=73.48 E-value=3.2 Score=39.64 Aligned_cols=29 Identities=28% Similarity=0.626 Sum_probs=24.9
Q ss_pred ccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 67 KPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 67 ~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
...+|-|++|-+- ++|||.|.|.|.+.++
T Consensus 1100 ~~~~fTc~afs~~---~~hL~vG~~~Geik~~ 1128 (1516)
T KOG1832|consen 1100 ETALFTCIAFSGG---TNHLAVGSHAGEIKIF 1128 (1516)
T ss_pred cccceeeEEeecC---CceEEeeeccceEEEE
Confidence 5588999999554 7999999999999875
No 89
>PRK04922 tolB translocation protein TolB; Provisional
Probab=73.38 E-value=13 Score=29.97 Aligned_cols=68 Identities=24% Similarity=0.349 Sum_probs=43.5
Q ss_pred ceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEE-EeecCceEE
Q psy9278 23 QLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLA-TGDFEGKLQ 96 (98)
Q Consensus 23 T~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lA-tGdf~G~L~ 96 (98)
-+...+|-|...+++.+. ...+...|.+|+++.++.+.+...+.. .-+..| +...+.|| +.+-+|+-.
T Consensus 205 ~v~~p~wSpDg~~la~~s-~~~~~~~l~~~dl~~g~~~~l~~~~g~--~~~~~~---SpDG~~l~~~~s~~g~~~ 273 (433)
T PRK04922 205 PILSPAWSPDGKKLAYVS-FERGRSAIYVQDLATGQRELVASFRGI--NGAPSF---SPDGRRLALTLSRDGNPE 273 (433)
T ss_pred ccccccCCCCCCEEEEEe-cCCCCcEEEEEECCCCCEEEeccCCCC--ccCceE---CCCCCEEEEEEeCCCCce
Confidence 467889999988888764 455677899999999988777655322 113333 22234554 456666533
No 90
>KOG0639|consensus
Probab=73.15 E-value=9 Score=34.46 Aligned_cols=63 Identities=19% Similarity=0.413 Sum_probs=43.4
Q ss_pred eecCCccEEEEccccCCcccEEEEEecCCc-eeEEEEe---cccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 29 WMPCSAKFIVLGMKPKGTGSIQMYEINDGQ-PELVKTV---EKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 29 WIP~SArfV~lG~~prgtG~iqIyeL~~~~-l~~~~e~---e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
=|-...|-|-.| |+|.++||++.+.. -.-++.+ .+.+-|+-|---. .-|.|.+|...-+|+||
T Consensus 426 tIS~~trhVyTg----GkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~p---dgrtLivGGeastlsiW 492 (705)
T KOG0639|consen 426 TISNPTRHVYTG----GKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLP---DGRTLIVGGEASTLSIW 492 (705)
T ss_pred EecCCcceeEec----CCCeEEEeeccCCCCCCccccccccCcccceeeeEecC---CCceEEeccccceeeee
Confidence 356667778777 99999999997762 2222222 2555565554322 35899999999999999
No 91
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=71.92 E-value=13 Score=31.52 Aligned_cols=50 Identities=20% Similarity=0.460 Sum_probs=36.3
Q ss_pred cEEEEccccCCcccEEEEEecCCcee---EEEEecccCce---eeeecCCCCCCCceEEE
Q psy9278 35 KFIVLGMKPKGTGSIQMYEINDGQPE---LVKTVEKPNAF---KCGTFNASPLSERYLAT 88 (98)
Q Consensus 35 rfV~lG~~prgtG~iqIyeL~~~~l~---~~~e~e~~~~~---KC~TFgaSsl~~r~lAt 88 (98)
-.+++|++ .|.|+||.-++++.+ ++=|.+...|| .||-|...+ +..+||.
T Consensus 38 d~IivGS~---~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~-~~~~LaV 93 (418)
T PF14727_consen 38 DKIIVGSY---SGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGS-EDLQLAV 93 (418)
T ss_pred cEEEEecc---ccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCC-CcceEEE
Confidence 46667743 799999999887644 77777777777 888884444 5667775
No 92
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=70.53 E-value=19 Score=27.94 Aligned_cols=68 Identities=24% Similarity=0.308 Sum_probs=41.7
Q ss_pred eeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEE-EeecCceEEe
Q psy9278 24 LFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLA-TGDFEGKLQI 97 (98)
Q Consensus 24 ~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lA-tGdf~G~L~i 97 (98)
++..+|-|...+++.+ ....+...|.+|++..++.+.+...+. ..-+..| |.- .+.|+ +.+-+|+..|
T Consensus 192 ~~~p~~Spdg~~la~~-~~~~~~~~i~v~d~~~g~~~~~~~~~~--~~~~~~~--spD-g~~l~~~~~~~~~~~i 260 (417)
T TIGR02800 192 ILSPAWSPDGQKLAYV-SFESGKPEIYVQDLATGQREKVASFPG--MNGAPAF--SPD-GSKLAVSLSKDGNPDI 260 (417)
T ss_pred eecccCCCCCCEEEEE-EcCCCCcEEEEEECCCCCEEEeecCCC--CccceEE--CCC-CCEEEEEECCCCCccE
Confidence 5677899998766654 455567889999999988777665431 2223444 222 23444 5565665443
No 93
>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E.
Probab=69.48 E-value=9.1 Score=25.03 Aligned_cols=27 Identities=22% Similarity=0.509 Sum_probs=20.4
Q ss_pred cEEEEccccCCcccEEEEEecCC--ceeEEEEe
Q psy9278 35 KFIVLGMKPKGTGSIQMYEINDG--QPELVKTV 65 (98)
Q Consensus 35 rfV~lG~~prgtG~iqIyeL~~~--~l~~~~e~ 65 (98)
.|.++| -.|.|+||..+.. +|+|++|.
T Consensus 31 ~Fav~~----e~~~iKIfkyd~~tNei~L~KE~ 59 (63)
T PF14157_consen 31 HFAVVD----EDGQIKIFKYDEDTNEITLKKEF 59 (63)
T ss_dssp EEEEE-----ETTEEEEEEEETTTTEEEEEEEE
T ss_pred EEEEEe----cCCeEEEEEeCCCCCeEEEEEee
Confidence 355553 5799999999654 89999986
No 94
>PRK04792 tolB translocation protein TolB; Provisional
Probab=69.36 E-value=19 Score=29.61 Aligned_cols=69 Identities=23% Similarity=0.316 Sum_probs=43.2
Q ss_pred eeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEE-EeecCceEEeC
Q psy9278 24 LFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLA-TGDFEGKLQIW 98 (98)
Q Consensus 24 ~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lA-tGdf~G~L~iw 98 (98)
+....|-|...+++.+- ..++...|-++++..++.+.+...+.... ...| |. ..++|| +.+-+|+..||
T Consensus 220 ~~~p~wSPDG~~La~~s-~~~g~~~L~~~dl~tg~~~~lt~~~g~~~--~~~w--SP-DG~~La~~~~~~g~~~Iy 289 (448)
T PRK04792 220 LMSPAWSPDGRKLAYVS-FENRKAEIFVQDIYTQVREKVTSFPGING--APRF--SP-DGKKLALVLSKDGQPEIY 289 (448)
T ss_pred ccCceECCCCCEEEEEE-ecCCCcEEEEEECCCCCeEEecCCCCCcC--CeeE--CC-CCCEEEEEEeCCCCeEEE
Confidence 45789999988877654 34566678888888888877765542211 1223 22 234565 46777876654
No 95
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=69.35 E-value=15 Score=28.19 Aligned_cols=43 Identities=21% Similarity=0.408 Sum_probs=33.0
Q ss_pred CccEEEEcccc------CCc-ccEEEEEecCC-----ceeEEEEecccCceeeee
Q psy9278 33 SAKFIVLGMKP------KGT-GSIQMYEINDG-----QPELVKTVEKPNAFKCGT 75 (98)
Q Consensus 33 SArfV~lG~~p------rgt-G~iqIyeL~~~-----~l~~~~e~e~~~~~KC~T 75 (98)
...+++||-.- ..+ |.|.+|++.++ +|+++.+.+.+.++-|.+
T Consensus 41 ~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~ 95 (321)
T PF03178_consen 41 KKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAIC 95 (321)
T ss_dssp SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEE
T ss_pred ccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhh
Confidence 37888888552 223 99999999995 999999999888886664
No 96
>KOG0282|consensus
Probab=68.80 E-value=15 Score=32.26 Aligned_cols=67 Identities=15% Similarity=0.390 Sum_probs=55.9
Q ss_pred eeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 24 LFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 24 ~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
+=|++|=+|-.+|+..| =.+.|++|..+.|.. +...+.....-|.-|-+.. .-.+.+|.+||+|.-|
T Consensus 261 Vrd~~~s~~g~~fLS~s----fD~~lKlwDtETG~~--~~~f~~~~~~~cvkf~pd~--~n~fl~G~sd~ki~~w 327 (503)
T KOG0282|consen 261 VRDASFNNCGTSFLSAS----FDRFLKLWDTETGQV--LSRFHLDKVPTCVKFHPDN--QNIFLVGGSDKKIRQW 327 (503)
T ss_pred hhhhhccccCCeeeeee----cceeeeeeccccceE--EEEEecCCCceeeecCCCC--CcEEEEecCCCcEEEE
Confidence 45789999999999888 688999999998864 4556666778899998887 5678899999999877
No 97
>KOG0646|consensus
Probab=68.58 E-value=4.6 Score=35.18 Aligned_cols=49 Identities=20% Similarity=0.470 Sum_probs=41.1
Q ss_pred cccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 46 TGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 46 tG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
+|.|-+|+|+-|+|-.+- ..+-.+|-|.-|-.. .-||.||+=||.+.+|
T Consensus 102 ~g~lYlWelssG~LL~v~-~aHYQ~ITcL~fs~d---gs~iiTgskDg~V~vW 150 (476)
T KOG0646|consen 102 SGNLYLWELSSGILLNVL-SAHYQSITCLKFSDD---GSHIITGSKDGAVLVW 150 (476)
T ss_pred cCcEEEEEeccccHHHHH-HhhccceeEEEEeCC---CcEEEecCCCccEEEE
Confidence 689999999999876555 558889999999333 3599999999999998
No 98
>KOG1332|consensus
Probab=66.87 E-value=7.5 Score=31.99 Aligned_cols=79 Identities=18% Similarity=0.355 Sum_probs=52.4
Q ss_pred hhhcCCcceeeeeeecCCcc--------------EEEEccccCCcccEEEEEecCCceeEEEEecccCc-eeeeecCCC-
Q psy9278 16 VEKSLDYQLFDCKWMPCSAK--------------FIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNA-FKCGTFNAS- 79 (98)
Q Consensus 16 i~ksl~yT~fD~kWIP~SAr--------------fV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~-~KC~TFgaS- 79 (98)
|.+...+-+..+-|-|-+|- ||.=| -.-.+.||..+.++-++-+.+|.... +|=.....+
T Consensus 144 i~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgG----cDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~ 219 (299)
T KOG1332|consen 144 IVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGG----CDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSV 219 (299)
T ss_pred hhhccccccceeeecCcCCCccccccCcccccceeeccC----CccceeeeecCCcchhhhhhhhhcchhhhhhhhcccc
Confidence 34445566778899999877 55444 34578889888875444444442222 233333344
Q ss_pred CCCCceEEEeecCceEEeC
Q psy9278 80 PLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 80 sl~~r~lAtGdf~G~L~iw 98 (98)
.|...+||+++-||++-||
T Consensus 220 gl~~s~iAS~SqDg~viIw 238 (299)
T KOG1332|consen 220 GLPKSTIASCSQDGTVIIW 238 (299)
T ss_pred CCCceeeEEecCCCcEEEE
Confidence 3778899999999999998
No 99
>KOG0288|consensus
Probab=66.17 E-value=3.3 Score=35.84 Aligned_cols=70 Identities=14% Similarity=0.311 Sum_probs=52.8
Q ss_pred cceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccC-ceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 22 YQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPN-AFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 22 yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~-~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
--++|+.|.|.|-+|..=| ..-.|++|+...++..+++..+-.. +|-=.-| ...++|+.+-+.|+++.||
T Consensus 176 gev~~v~~l~~sdtlatgg----~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~---d~~~~~~iAas~d~~~r~W 246 (459)
T KOG0288|consen 176 GEVHDVEFLRNSDTLATGG----SDRIIKLWNVLGEKSELISTLAGSLGNITSIDF---DSDNKHVIAASNDKNLRLW 246 (459)
T ss_pred cccceeEEccCcchhhhcc----hhhhhhhhhcccchhhhhhhhhccCCCcceeee---cCCCceEEeecCCCceeee
Confidence 4578999999999998777 4567999999999988877776432 2222222 2347888888999999999
No 100
>KOG0649|consensus
Probab=66.03 E-value=24 Score=29.33 Aligned_cols=61 Identities=16% Similarity=0.354 Sum_probs=46.9
Q ss_pred ecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 30 MPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 30 IP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
.|++-.++.-| |.|+|--++|+.|+++-...= +..-+-|.. +...+..+-+|.=||..+||
T Consensus 123 dP~enSi~~Ag----GD~~~y~~dlE~G~i~r~~rG-HtDYvH~vv---~R~~~~qilsG~EDGtvRvW 183 (325)
T KOG0649|consen 123 DPSENSILFAG----GDGVIYQVDLEDGRIQREYRG-HTDYVHSVV---GRNANGQILSGAEDGTVRVW 183 (325)
T ss_pred ccCCCcEEEec----CCeEEEEEEecCCEEEEEEcC-Ccceeeeee---ecccCcceeecCCCccEEEE
Confidence 47999999888 999999999999988765432 555566652 33345679999999999999
No 101
>KOG1523|consensus
Probab=65.93 E-value=14 Score=31.26 Aligned_cols=73 Identities=22% Similarity=0.351 Sum_probs=50.2
Q ss_pred cCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCC-ceeEEEEeccc--CceeeeecCCCCCCCceEEEeecCceE
Q psy9278 19 SLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDG-QPELVKTVEKP--NAFKCGTFNASPLSERYLATGDFEGKL 95 (98)
Q Consensus 19 sl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~-~l~~~~e~e~~--~~~KC~TFgaSsl~~r~lAtGdf~G~L 95 (98)
.+|=.+-.+||-|.+-||+|=+ |-=.|.|+-+++. +-=+-+-+.|| ..+-|...-++ +-.||+|+=||+.
T Consensus 98 RiNrAAt~V~WsP~enkFAVgS----gar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpn---nVLlaaGs~D~k~ 170 (361)
T KOG1523|consen 98 RINRAATCVKWSPKENKFAVGS----GARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPN---NVLLAAGSTDGKC 170 (361)
T ss_pred EeccceeeEeecCcCceEEecc----CccEEEEEEEecccceehhhhhCCccccceeeeeccCC---cceecccccCcce
Confidence 3455667899999999998644 4447888877554 33333334444 45667766555 5789999999998
Q ss_pred EeC
Q psy9278 96 QIW 98 (98)
Q Consensus 96 ~iw 98 (98)
+|+
T Consensus 171 rVf 173 (361)
T KOG1523|consen 171 RVF 173 (361)
T ss_pred eEE
Confidence 874
No 102
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=65.71 E-value=11 Score=33.41 Aligned_cols=45 Identities=20% Similarity=0.376 Sum_probs=35.1
Q ss_pred CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCC--ceeEEEEeccc
Q psy9278 20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDG--QPELVKTVEKP 68 (98)
Q Consensus 20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~--~l~~~~e~e~~ 68 (98)
..+-|..+.|=|.+|=|+|.+ ..|.||+|++-=+ +++++.|--.|
T Consensus 298 a~~~P~~iaWHp~gai~~V~s----~qGelQ~FD~ALspi~~qLlsEd~~P 344 (545)
T PF11768_consen 298 AEFIPTLIAWHPDGAIFVVGS----EQGELQCFDMALSPIKMQLLSEDATP 344 (545)
T ss_pred ecccceEEEEcCCCcEEEEEc----CCceEEEEEeecCccceeeccccCCC
Confidence 347799999999999999887 7899999997444 66677653333
No 103
>KOG0319|consensus
Probab=65.16 E-value=9.6 Score=35.00 Aligned_cols=67 Identities=13% Similarity=0.294 Sum_probs=49.0
Q ss_pred ceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 23 QLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 23 T~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
|-|++ .|..-++++.+ -.+.|+||+|+.|++--.=..-+..|+=--.|-+.+ .-||||+-||.+.+|
T Consensus 66 ta~~l--~~d~~~L~~a~----rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g---~LlAtggaD~~v~VW 132 (775)
T KOG0319|consen 66 TALAL--TPDEEVLVTAS----RSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTG---TLLATGGADGRVKVW 132 (775)
T ss_pred heeee--cCCccEEEEee----ccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCC---ceEEeccccceEEEE
Confidence 44444 67777777766 578999999999954333333356777777776555 579999999999998
No 104
>KOG2055|consensus
Probab=64.78 E-value=25 Score=31.04 Aligned_cols=67 Identities=10% Similarity=0.273 Sum_probs=46.8
Q ss_pred eeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 26 DCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 26 D~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
.++.=|..-=++|.| =.|.++||++++..=.++..+- ...||.|+.|.+.. ...++++.-.-.|.+|
T Consensus 218 sv~FHp~~plllvaG----~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G--~~~i~~s~rrky~ysy 285 (514)
T KOG2055|consen 218 SVQFHPTAPLLLVAG----LDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNG--HSVIFTSGRRKYLYSY 285 (514)
T ss_pred EEEecCCCceEEEec----CCCcEEEEEecCccChhheeeeeccCccceeeecCCC--ceEEEecccceEEEEe
Confidence 445555555555555 4799999999998777777776 77899999997754 3356666655555544
No 105
>KOG4328|consensus
Probab=64.15 E-value=12 Score=32.86 Aligned_cols=82 Identities=21% Similarity=0.347 Sum_probs=49.7
Q ss_pred eehhhhhc-CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEee
Q psy9278 12 IICLVEKS-LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGD 90 (98)
Q Consensus 12 IIehi~ks-l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGd 90 (98)
.|.|-+.. =--|+|-..|=| .-.++++|.+||. |.||.=+.+.+.+----+...+|-|.- .-...+..-+|-|.
T Consensus 410 ~I~Hn~~t~RwlT~fKA~W~P-~~~li~vg~~~r~---IDv~~~~~~q~v~el~~P~~~tI~~vn-~~HP~~~~~~aG~~ 484 (498)
T KOG4328|consen 410 TIPHNNRTGRWLTPFKAAWDP-DYNLIVVGRYPRP---IDVFDGNGGQMVCELHDPESSTIPSVN-EFHPMRDTLAAGGN 484 (498)
T ss_pred eeeccCcccccccchhheeCC-CccEEEEeccCcc---eeEEcCCCCEEeeeccCccccccccce-eecccccceeccCC
Confidence 34454444 334899999999 8889999999998 888887766533221111222222210 00223344577778
Q ss_pred cCceEEeC
Q psy9278 91 FEGKLQIW 98 (98)
Q Consensus 91 f~G~L~iw 98 (98)
..|.+-||
T Consensus 485 s~Gki~vf 492 (498)
T KOG4328|consen 485 SSGKIYVF 492 (498)
T ss_pred ccceEEEE
Confidence 88888776
No 106
>PRK01742 tolB translocation protein TolB; Provisional
Probab=63.42 E-value=30 Score=27.91 Aligned_cols=67 Identities=16% Similarity=0.301 Sum_probs=38.6
Q ss_pred eeeeeecCCccEEEEccccCCcccEEEEEe--cCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 25 FDCKWMPCSAKFIVLGMKPKGTGSIQMYEI--NDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 25 fD~kWIP~SArfV~lG~~prgtG~iqIyeL--~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
...+|-|...++++... ..|.++||.+ +.+++..+.. .....-...|-.. ..+-+.+.|-+|..+||
T Consensus 251 ~~~~wSPDG~~La~~~~---~~g~~~Iy~~d~~~~~~~~lt~--~~~~~~~~~wSpD--G~~i~f~s~~~g~~~I~ 319 (429)
T PRK01742 251 GAPAFSPDGSRLAFASS---KDGVLNIYVMGANGGTPSQLTS--GAGNNTEPSWSPD--GQSILFTSDRSGSPQVY 319 (429)
T ss_pred CceeECCCCCEEEEEEe---cCCcEEEEEEECCCCCeEeecc--CCCCcCCEEECCC--CCEEEEEECCCCCceEE
Confidence 36899999888887653 2456777755 5566554433 2222334455332 23333455667777776
No 107
>KOG0305|consensus
Probab=63.38 E-value=29 Score=30.15 Aligned_cols=70 Identities=14% Similarity=0.237 Sum_probs=50.1
Q ss_pred ceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 23 QLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 23 T~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
+|=-+.|.|..-.+|+--.++.+ .|+||.... ++++.+. ..|.-+=. +-|-+.....++||+-|.+|++|
T Consensus 389 QVcsL~Wsk~~kEi~sthG~s~n--~i~lw~~ps--~~~~~~l-~gH~~RVl-~la~SPdg~~i~t~a~DETlrfw 458 (484)
T KOG0305|consen 389 QVCSLIWSKKYKELLSTHGYSEN--QITLWKYPS--MKLVAEL-LGHTSRVL-YLALSPDGETIVTGAADETLRFW 458 (484)
T ss_pred ceeeEEEcCCCCEEEEecCCCCC--cEEEEeccc--cceeeee-cCCcceeE-EEEECCCCCEEEEecccCcEEec
Confidence 34457899999999987777766 999999977 6666655 33333322 22333335689999999999998
No 108
>KOG0302|consensus
Probab=63.29 E-value=27 Score=30.24 Aligned_cols=70 Identities=26% Similarity=0.470 Sum_probs=43.1
Q ss_pred ceeeeeeecCCccEEEEccccCCcccEEEEEecCC-ceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 23 QLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDG-QPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 23 T~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~-~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
.|=|..|=|.-.-...-++ -.|.|.||.+..+ +-..+.--.+..-+-=.+| |.. ..-||+|+=||.|.||
T Consensus 259 SVEDLqWSptE~~vfaScS---~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISW--nr~-~~lLasG~DdGt~~iw 329 (440)
T KOG0302|consen 259 SVEDLQWSPTEDGVFASCS---CDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISW--NRR-EPLLASGGDDGTLSIW 329 (440)
T ss_pred chhhhccCCccCceEEeee---cCceEEEEEecCCCccceeEeeccCCceeeEEc--cCC-cceeeecCCCceEEEE
Confidence 4568889887665554442 5799999998665 2222222223333333333 111 2269999999999998
No 109
>PF01839 FG-GAP: FG-GAP repeat; InterPro: IPR013517 This region contains the extracellular repeat that is found in up to seven copies in alpha integrins. This repeat has been predicted to fold into a beta propeller structure []. The repeat is called the FG-GAP repeat after two conserved motifs in the repeat []. The FG-GAP repeats are found in the N terminus of integrin alpha chains, a region that has been shown to be important for ligand binding []. A putative Ca2+ binding motif is found in some of the repeats. ; PDB: 1L5G_A 3IJE_A 1M1X_A 1JV2_A 1U8C_A 3V4P_C 3V4V_C 3VI3_A 3VI4_C 2VDN_A ....
Probab=62.89 E-value=5.5 Score=22.35 Aligned_cols=8 Identities=63% Similarity=1.248 Sum_probs=6.1
Q ss_pred EEEeecCc
Q psy9278 86 LATGDFEG 93 (98)
Q Consensus 86 lAtGdf~G 93 (98)
+|+|||+|
T Consensus 5 ~~~gD~ng 12 (34)
T PF01839_consen 5 VAVGDFNG 12 (34)
T ss_dssp EEEESTSS
T ss_pred cEEEEcCC
Confidence 77778876
No 110
>KOG0294|consensus
Probab=62.73 E-value=18 Score=30.63 Aligned_cols=64 Identities=17% Similarity=0.397 Sum_probs=46.3
Q ss_pred ecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 30 MPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 30 IP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
+-++.++|+-|+. .-.|.||+|...+ ++-.-+.+...+-|..|-...+-. ||..|.=||.+.||
T Consensus 49 vAVs~~~~aSGss---DetI~IYDm~k~~-qlg~ll~HagsitaL~F~~~~S~s-hLlS~sdDG~i~iw 112 (362)
T KOG0294|consen 49 LAVSGPYVASGSS---DETIHIYDMRKRK-QLGILLSHAGSITALKFYPPLSKS-HLLSGSDDGHIIIW 112 (362)
T ss_pred EEecceeEeccCC---CCcEEEEeccchh-hhcceeccccceEEEEecCCcchh-heeeecCCCcEEEE
Confidence 4557789998853 5689999996652 222333457889999995443222 99999999999998
No 111
>KOG0313|consensus
Probab=61.34 E-value=23 Score=30.49 Aligned_cols=73 Identities=18% Similarity=0.370 Sum_probs=50.0
Q ss_pred CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCc--eeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEe
Q psy9278 20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQ--PELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQI 97 (98)
Q Consensus 20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~--l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~i 97 (98)
-++.++++---| +.++++.|+..| .|++|+=..+. +...+=+-+.+=+- +-..|...+.+|+.|++||...+
T Consensus 299 ~~ksl~~i~~~~-~~~Ll~~gssdr---~irl~DPR~~~gs~v~~s~~gH~nwVs--svkwsp~~~~~~~S~S~D~t~kl 372 (423)
T KOG0313|consen 299 TNKSLNCISYSP-LSKLLASGSSDR---HIRLWDPRTGDGSVVSQSLIGHKNWVS--SVKWSPTNEFQLVSGSYDNTVKL 372 (423)
T ss_pred cCcceeEeeccc-ccceeeecCCCC---ceeecCCCCCCCceeEEeeecchhhhh--heecCCCCceEEEEEecCCeEEE
Confidence 356677787788 677788887665 58888875553 33333333444221 22457788999999999999999
Q ss_pred C
Q psy9278 98 W 98 (98)
Q Consensus 98 w 98 (98)
|
T Consensus 373 W 373 (423)
T KOG0313|consen 373 W 373 (423)
T ss_pred E
Confidence 8
No 112
>KOG2394|consensus
Probab=61.10 E-value=39 Score=30.49 Aligned_cols=73 Identities=23% Similarity=0.471 Sum_probs=49.8
Q ss_pred ceeeeeeecCCccEEEEccccCCcccEEEEEec--------------CC-ceeEEEEe--cccCceeeeecCCCCCC---
Q psy9278 23 QLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEIN--------------DG-QPELVKTV--EKPNAFKCGTFNASPLS--- 82 (98)
Q Consensus 23 T~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~--------------~~-~l~~~~e~--e~~~~~KC~TFgaSsl~--- 82 (98)
.+=-+||+|.+-..+++ +...|-+-+|.++ ++ .+....-. ...+++-|=.|++.+..
T Consensus 221 svT~ikWvpg~~~~Fl~---a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~ 297 (636)
T KOG2394|consen 221 SVTCIKWVPGSDSLFLV---AHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFA 297 (636)
T ss_pred ceEEEEEEeCCCceEEE---EEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEecccccccee
Confidence 45578999998766654 3467788888432 12 33333222 13388999988877544
Q ss_pred ----CceEEEeecCceEEeC
Q psy9278 83 ----ERYLATGDFEGKLQIW 98 (98)
Q Consensus 83 ----~r~lAtGdf~G~L~iw 98 (98)
-+||||-+-||-|+|+
T Consensus 298 FS~DG~~LA~VSqDGfLRvF 317 (636)
T KOG2394|consen 298 FSPDGKYLATVSQDGFLRIF 317 (636)
T ss_pred EcCCCceEEEEecCceEEEe
Confidence 5799999999999985
No 113
>KOG0278|consensus
Probab=61.02 E-value=29 Score=28.90 Aligned_cols=72 Identities=15% Similarity=0.319 Sum_probs=51.3
Q ss_pred cCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCc-eeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEe
Q psy9278 19 SLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQ-PELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQI 97 (98)
Q Consensus 19 sl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~-l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~i 97 (98)
.+.|++-..-==|.+-.||+=| ..+.+..|+.+-|+ +.+ ..-.++.++-|..|-.-- .--|.|+=||.|+|
T Consensus 222 k~P~nV~SASL~P~k~~fVaGg----ed~~~~kfDy~TgeEi~~-~nkgh~gpVhcVrFSPdG---E~yAsGSEDGTirl 293 (334)
T KOG0278|consen 222 KMPCNVESASLHPKKEFFVAGG----EDFKVYKFDYNTGEEIGS-YNKGHFGPVHCVRFSPDG---ELYASGSEDGTIRL 293 (334)
T ss_pred cCccccccccccCCCceEEecC----cceEEEEEeccCCceeee-cccCCCCceEEEEECCCC---ceeeccCCCceEEE
Confidence 3556666666668886777655 45677777776664 444 345588999999994432 35799999999999
Q ss_pred C
Q psy9278 98 W 98 (98)
Q Consensus 98 w 98 (98)
|
T Consensus 294 W 294 (334)
T KOG0278|consen 294 W 294 (334)
T ss_pred E
Confidence 9
No 114
>PF08954 DUF1900: Domain of unknown function (DUF1900); InterPro: IPR015049 This domain is predominantly found in the structural protein coronin, and is duplicated in some sequences. It has no known function []. ; PDB: 2B4E_A 2AQ5_A.
Probab=61.01 E-value=27 Score=25.18 Aligned_cols=41 Identities=24% Similarity=0.372 Sum_probs=23.7
Q ss_pred cCCccEEEEccccCCcccEEEEEecCC--ceeEEEEecccCceeee
Q psy9278 31 PCSAKFIVLGMKPKGTGSIQMYEINDG--QPELVKTVEKPNAFKCG 74 (98)
Q Consensus 31 P~SArfV~lG~~prgtG~iqIyeL~~~--~l~~~~e~e~~~~~KC~ 74 (98)
|.+.-+.+.| ||.|.|+.||++.+ .+.-+.+...+.+.|=.
T Consensus 20 ~dt~llyl~g---KGD~~ir~yEv~~~~p~l~~l~~~~s~~~~~G~ 62 (136)
T PF08954_consen 20 EDTNLLYLAG---KGDGNIRYYEVSDESPYLHYLSEYRSPEPQKGF 62 (136)
T ss_dssp TTT-EEEEEE---TT-S-EEEEEE-SSTTSEEEEEEE--SS--SEE
T ss_pred CCCCEEEEEe---ccCcEEEEEEEcCCCCceEEccccccCCCeEee
Confidence 4555555555 69999999999888 67777777666665533
No 115
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=60.78 E-value=46 Score=25.22 Aligned_cols=63 Identities=11% Similarity=0.304 Sum_probs=38.0
Q ss_pred eeeecCCccEEEEccccCCcccEEEEEecC--CceeEEEEec---ccCceeeeecCCCCCCCceEEE-eecCceEEeC
Q psy9278 27 CKWMPCSAKFIVLGMKPKGTGSIQMYEIND--GQPELVKTVE---KPNAFKCGTFNASPLSERYLAT-GDFEGKLQIW 98 (98)
Q Consensus 27 ~kWIP~SArfV~lG~~prgtG~iqIyeL~~--~~l~~~~e~e---~~~~~KC~TFgaSsl~~r~lAt-Gdf~G~L~iw 98 (98)
+.+-|. -||+.++ -++.+.|.||+++. +.++++..+. .|..| .| +.- .++|++ ...+|.+.||
T Consensus 233 i~~~pd-g~~lyv~--~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~---~~--~~d-g~~l~va~~~~~~v~v~ 301 (330)
T PRK11028 233 IHITPD-GRHLYAC--DRTASLISVFSVSEDGSVLSFEGHQPTETQPRGF---NI--DHS-GKYLIAAGQKSHHISVY 301 (330)
T ss_pred EEECCC-CCEEEEe--cCCCCeEEEEEEeCCCCeEEEeEEEeccccCCce---EE--CCC-CCEEEEEEccCCcEEEE
Confidence 334454 4666665 36788999999954 4567777654 33433 22 222 455555 4458888886
No 116
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=60.33 E-value=23 Score=21.07 Aligned_cols=37 Identities=14% Similarity=0.327 Sum_probs=27.6
Q ss_pred eeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 59 PELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 59 l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
++.+.|-.-+..++|..|-.. ---||.|.-+|.+.|+
T Consensus 2 f~~~~~k~l~~~v~~~~w~P~---mdLiA~~t~~g~v~v~ 38 (47)
T PF12894_consen 2 FRQLGEKNLPSRVSCMSWCPT---MDLIALGTEDGEVLVY 38 (47)
T ss_pred cceecccCCCCcEEEEEECCC---CCEEEEEECCCeEEEE
Confidence 445566666777888888544 3589999999999874
No 117
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=58.98 E-value=50 Score=25.87 Aligned_cols=70 Identities=21% Similarity=0.403 Sum_probs=41.4
Q ss_pred ceeeeeeecCCccEEEEccccCCcccEEEEEec--CCceeEEEEecc-cCceeeeecCCCCCCCceEEEee-cCceEEeC
Q psy9278 23 QLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEIN--DGQPELVKTVEK-PNAFKCGTFNASPLSERYLATGD-FEGKLQIW 98 (98)
Q Consensus 23 T~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~--~~~l~~~~e~e~-~~~~KC~TFgaSsl~~r~lAtGd-f~G~L~iw 98 (98)
.+.+++ |--.-||+-+. -|+...|.+|+++ .|+|+.+..+.. -..=+-..| +.. .+.|++++ .++.+.+|
T Consensus 246 ~~~~i~-ispdg~~lyvs--nr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~--s~~-g~~l~Va~~~s~~v~vf 319 (345)
T PF10282_consen 246 APAEIA-ISPDGRFLYVS--NRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAF--SPD-GRYLYVANQDSNTVSVF 319 (345)
T ss_dssp SEEEEE-E-TTSSEEEEE--ECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE---TT-SSEEEEEETTTTEEEEE
T ss_pred CceeEE-EecCCCEEEEE--eccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEE--eCC-CCEEEEEecCCCeEEEE
Confidence 455553 44456777775 4679999999994 478999988764 111233334 333 34555554 55566553
No 118
>PRK03629 tolB translocation protein TolB; Provisional
Probab=58.52 E-value=41 Score=27.36 Aligned_cols=71 Identities=21% Similarity=0.374 Sum_probs=44.2
Q ss_pred cceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEE-EeecCceEEeC
Q psy9278 22 YQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLA-TGDFEGKLQIW 98 (98)
Q Consensus 22 yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lA-tGdf~G~L~iw 98 (98)
..+...+|-|...+++.+. ..++...|-++.++.|+.+.+.+.+.... ...| |. ..+.|| +.+-+|...||
T Consensus 199 ~~~~~p~wSPDG~~la~~s-~~~g~~~i~i~dl~~G~~~~l~~~~~~~~--~~~~--SP-DG~~La~~~~~~g~~~I~ 270 (429)
T PRK03629 199 QPLMSPAWSPDGSKLAYVT-FESGRSALVIQTLANGAVRQVASFPRHNG--APAF--SP-DGSKLAFALSKTGSLNLY 270 (429)
T ss_pred CceeeeEEcCCCCEEEEEE-ecCCCcEEEEEECCCCCeEEccCCCCCcC--CeEE--CC-CCCEEEEEEcCCCCcEEE
Confidence 3456789999998888764 34456678899999998887766543211 1223 22 234565 34666654443
No 119
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=58.36 E-value=86 Score=24.54 Aligned_cols=67 Identities=19% Similarity=0.388 Sum_probs=43.2
Q ss_pred eecCCccEEEEccccCCcccEEEEEecC--CceeEEEEecccCceeeeecCCCCCCCceEEEeec-CceEEe
Q psy9278 29 WMPCSAKFIVLGMKPKGTGSIQMYEIND--GQPELVKTVEKPNAFKCGTFNASPLSERYLATGDF-EGKLQI 97 (98)
Q Consensus 29 WIP~SArfV~lG~~prgtG~iqIyeL~~--~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf-~G~L~i 97 (98)
+=|...++.++.+.....|.|..|.++. ++|+++.+....-.-=|- -+-+...+.|.+.++ +|.+.+
T Consensus 44 ~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~--i~~~~~g~~l~vany~~g~v~v 113 (345)
T PF10282_consen 44 VSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCH--IAVDPDGRFLYVANYGGGSVSV 113 (345)
T ss_dssp E-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEE--EEECTTSSEEEEEETTTTEEEE
T ss_pred EEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEE--EEEecCCCEEEEEEccCCeEEE
Confidence 3466666666655556899999999987 689999988642222222 112234678888887 566654
No 120
>KOG2048|consensus
Probab=58.16 E-value=48 Score=30.31 Aligned_cols=83 Identities=12% Similarity=0.246 Sum_probs=54.1
Q ss_pred CccceehhhhhcCCcceeeee---eecCCccEEEEccccCCcccEEEEEecCCc-eeEEEEecccCceeeeecCCCCCCC
Q psy9278 8 DKPQIICLVEKSLDYQLFDCK---WMPCSAKFIVLGMKPKGTGSIQMYEINDGQ-PELVKTVEKPNAFKCGTFNASPLSE 83 (98)
Q Consensus 8 ~kPQIIehi~ksl~yT~fD~k---WIP~SArfV~lG~~prgtG~iqIyeL~~~~-l~~~~e~e~~~~~KC~TFgaSsl~~ 83 (98)
.+-.+++|--..+||+|=.+. -...| +-+++| |.+|.|+||.+..+= ++.+-..-...+|.=.-|. +.
T Consensus 9 s~~~m~vhrcrf~d~~Ps~I~slA~s~kS-~~lAvs---Rt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~----e~ 80 (691)
T KOG2048|consen 9 SRGKMQVHRCRFVDYKPSEIVSLAYSHKS-NQLAVS---RTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA----EG 80 (691)
T ss_pred ccceeEEEEEEEEeeeccceEEEEEeccC-Cceeee---ccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc----cC
Confidence 344577788888888875443 33333 346665 889999999998863 3444444566666655554 23
Q ss_pred ceEEEeecCceEEeC
Q psy9278 84 RYLATGDFEGKLQIW 98 (98)
Q Consensus 84 r~lAtGdf~G~L~iw 98 (98)
-.|-.-+++|.+.-|
T Consensus 81 ~RLFS~g~sg~i~Ew 95 (691)
T KOG2048|consen 81 GRLFSSGLSGSITEW 95 (691)
T ss_pred CeEEeecCCceEEEE
Confidence 356677889988776
No 121
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=57.63 E-value=68 Score=24.60 Aligned_cols=77 Identities=14% Similarity=0.212 Sum_probs=49.7
Q ss_pred ehhhhhcCCcceeeeeeecCCccEEEEccccCCcccEEEEEecC--CceeEEEEecccCceeeeecCCCCCCCceEEEee
Q psy9278 13 ICLVEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEIND--GQPELVKTVEKPNAFKCGTFNASPLSERYLATGD 90 (98)
Q Consensus 13 Iehi~ksl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~--~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGd 90 (98)
..-......+.+-++.+... ++++|-.- ..+.+++.+. .+|.++..-..+..+-++.|=... + .++++|
T Consensus 121 ~~~~~~~~~~~i~sl~~~~~---~I~vgD~~---~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~--~-~~i~~D 191 (321)
T PF03178_consen 121 LKKAFYDSPFYITSLSVFKN---YILVGDAM---KSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDE--D-TIIVGD 191 (321)
T ss_dssp EEEEEE-BSSSEEEEEEETT---EEEEEESS---SSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SS--S-EEEEEE
T ss_pred hhhheecceEEEEEEecccc---EEEEEEcc---cCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCC--c-EEEEEc
Confidence 33333344556666666643 78888444 4466666653 358888877778888888775332 3 999999
Q ss_pred cCceEEeC
Q psy9278 91 FEGKLQIW 98 (98)
Q Consensus 91 f~G~L~iw 98 (98)
-+|+|.++
T Consensus 192 ~~gnl~~l 199 (321)
T PF03178_consen 192 KDGNLFVL 199 (321)
T ss_dssp TTSEEEEE
T ss_pred CCCeEEEE
Confidence 99999864
No 122
>PRK00178 tolB translocation protein TolB; Provisional
Probab=57.51 E-value=42 Score=26.68 Aligned_cols=69 Identities=14% Similarity=0.260 Sum_probs=42.2
Q ss_pred ceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEE-EeecCceEEe
Q psy9278 23 QLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLA-TGDFEGKLQI 97 (98)
Q Consensus 23 T~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lA-tGdf~G~L~i 97 (98)
.+...+|-|...+++.+.. -++...|-+|+++.|+.+.+.+.+.. .-...|- ...+.|| +.+-+|.-.|
T Consensus 200 ~~~~p~wSpDG~~la~~s~-~~~~~~l~~~~l~~g~~~~l~~~~g~--~~~~~~S---pDG~~la~~~~~~g~~~I 269 (430)
T PRK00178 200 PILSPRWSPDGKRIAYVSF-EQKRPRIFVQNLDTGRREQITNFEGL--NGAPAWS---PDGSKLAFVLSKDGNPEI 269 (430)
T ss_pred ceeeeeECCCCCEEEEEEc-CCCCCEEEEEECCCCCEEEccCCCCC--cCCeEEC---CCCCEEEEEEccCCCceE
Confidence 3567799999988877653 34566788889999988777654321 1123332 2234555 4555665444
No 123
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=57.38 E-value=29 Score=27.23 Aligned_cols=44 Identities=18% Similarity=0.385 Sum_probs=38.7
Q ss_pred CcceeeeeeecCCccEEEEccccCC----cccEEEEEecCCceeEEEEe
Q psy9278 21 DYQLFDCKWMPCSAKFIVLGMKPKG----TGSIQMYEINDGQPELVKTV 65 (98)
Q Consensus 21 ~yT~fD~kWIP~SArfV~lG~~prg----tG~iqIyeL~~~~l~~~~e~ 65 (98)
.|+|-++-||-..-=+|++| .+-| .|-|-+|.|..++++.+.+.
T Consensus 111 k~sPK~i~WiDD~~L~vIIG-~a~GTvS~GGnLy~~nl~tg~~~~ly~~ 158 (200)
T PF15525_consen 111 KYSPKYIEWIDDNNLAVIIG-YAHGTVSKGGNLYKYNLNTGNLTELYEW 158 (200)
T ss_pred ccCCceeEEecCCcEEEEEc-cccceEccCCeEEEEEccCCceeEeeec
Confidence 69999999999999999999 3333 68999999999999999886
No 124
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=56.68 E-value=38 Score=28.65 Aligned_cols=67 Identities=15% Similarity=0.329 Sum_probs=43.2
Q ss_pred ecCCcc-EEEEccccCCcccEEEEEecCC-------ceeEEEEecc---cCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 30 MPCSAK-FIVLGMKPKGTGSIQMYEINDG-------QPELVKTVEK---PNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 30 IP~SAr-fV~lG~~prgtG~iqIyeL~~~-------~l~~~~e~e~---~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
++.+.. .++| =+||.=.+.+|...++. +|+++.|.-. .-.+=||+||..... ..|+.=++||.|+++
T Consensus 83 ~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~-~~IcVQS~DG~L~~f 160 (418)
T PF14727_consen 83 VSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGR-DFICVQSMDGSLSFF 160 (418)
T ss_pred cCCCCcceEEE-ecCCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCc-eEEEEEecCceEEEE
Confidence 565543 3333 47776444444222333 5777777763 345689999887653 489999999999875
No 125
>KOG1036|consensus
Probab=56.67 E-value=23 Score=29.61 Aligned_cols=65 Identities=20% Similarity=0.564 Sum_probs=47.1
Q ss_pred eeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 24 LFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 24 ~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
+-||..+|.+.-| .| .-.|.|..|+|+.++-..+-. +..+++|.-+- ...-.+.+|++|+.+.+|
T Consensus 57 lL~c~F~d~~~~~--~G---~~dg~vr~~Dln~~~~~~igt--h~~~i~ci~~~---~~~~~vIsgsWD~~ik~w 121 (323)
T KOG1036|consen 57 LLDCAFADESTIV--TG---GLDGQVRRYDLNTGNEDQIGT--HDEGIRCIEYS---YEVGCVISGSWDKTIKFW 121 (323)
T ss_pred eeeeeccCCceEE--Ee---ccCceEEEEEecCCcceeecc--CCCceEEEEee---ccCCeEEEcccCccEEEE
Confidence 4577777744332 33 258999999999998766655 45678888774 223479999999999998
No 126
>KOG4328|consensus
Probab=56.09 E-value=53 Score=28.95 Aligned_cols=71 Identities=10% Similarity=0.297 Sum_probs=48.0
Q ss_pred CcceeeeeeecCCc-cEEEEccccCCcccEEEEEec---CCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEE
Q psy9278 21 DYQLFDCKWMPCSA-KFIVLGMKPKGTGSIQMYEIN---DGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQ 96 (98)
Q Consensus 21 ~yT~fD~kWIP~SA-rfV~lG~~prgtG~iqIyeL~---~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~ 96 (98)
+=-+|.+.|-|+-- +.|++|. ..|.+-+|++. +.+=....=.-+..++-|.-|...+ ..++-.-++||.+.
T Consensus 186 ~~Rit~l~fHPt~~~~lva~Gd---K~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n--~s~i~ssSyDGtiR 260 (498)
T KOG4328|consen 186 DRRITSLAFHPTENRKLVAVGD---KGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPAN--TSQIYSSSYDGTIR 260 (498)
T ss_pred ccceEEEEecccCcceEEEEcc---CCCcEEEEecCCCCCccCceEEeccCCccccceEecCCC--hhheeeeccCceee
Confidence 33468899999999 9999994 57999999993 3333444444566678888885544 33444455555544
No 127
>KOG0286|consensus
Probab=56.00 E-value=73 Score=26.84 Aligned_cols=72 Identities=15% Similarity=0.370 Sum_probs=51.1
Q ss_pred hcCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCc-eeeeecCCCCCCCceEEEeecCceEE
Q psy9278 18 KSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNA-FKCGTFNASPLSERYLATGDFEGKLQ 96 (98)
Q Consensus 18 ksl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~-~KC~TFgaSsl~~r~lAtGdf~G~L~ 96 (98)
|....-+|+..|-|.|-++|. +.-.|.|-||+.--. +++.-++-|.. +=-|.|.+|. ..+|+|.+|..-+
T Consensus 52 kGH~~Ki~~~~ws~Dsr~ivS----aSqDGklIvWDs~Tt--nK~haipl~s~WVMtCA~sPSg---~~VAcGGLdN~Cs 122 (343)
T KOG0286|consen 52 KGHLNKIYAMDWSTDSRRIVS----ASQDGKLIVWDSFTT--NKVHAIPLPSSWVMTCAYSPSG---NFVACGGLDNKCS 122 (343)
T ss_pred cccccceeeeEecCCcCeEEe----eccCCeEEEEEcccc--cceeEEecCceeEEEEEECCCC---CeEEecCcCceeE
Confidence 344566899999999999994 457899999986332 23344443332 3456677765 5899999999887
Q ss_pred eC
Q psy9278 97 IW 98 (98)
Q Consensus 97 iw 98 (98)
||
T Consensus 123 iy 124 (343)
T KOG0286|consen 123 IY 124 (343)
T ss_pred EE
Confidence 75
No 128
>KOG0650|consensus
Probab=55.75 E-value=64 Score=29.59 Aligned_cols=45 Identities=22% Similarity=0.479 Sum_probs=33.8
Q ss_pred ccEEEEccccCC--------cccEEEEEecCCceeEEEEecccCceeeeecCCCC
Q psy9278 34 AKFIVLGMKPKG--------TGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASP 80 (98)
Q Consensus 34 ArfV~lG~~prg--------tG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSs 80 (98)
....++-..|+| .|+++|||+-.| .+++.++....|+|..|...+
T Consensus 401 g~Vr~iSvdp~G~wlasGsdDGtvriWEi~Tg--Rcvr~~~~d~~I~~vaw~P~~ 453 (733)
T KOG0650|consen 401 GLVRSISVDPSGEWLASGSDDGTVRIWEIATG--RCVRTVQFDSEIRSVAWNPLS 453 (733)
T ss_pred CeEEEEEecCCcceeeecCCCCcEEEEEeecc--eEEEEEeecceeEEEEecCCC
Confidence 344455556666 789999999877 466777778899999997665
No 129
>KOG0267|consensus
Probab=55.53 E-value=6.3 Score=36.30 Aligned_cols=29 Identities=34% Similarity=0.716 Sum_probs=27.1
Q ss_pred ccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 67 KPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 67 ~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
+..+|+|.||-++ ++.||+|.=+|.|.+|
T Consensus 69 hespIeSl~f~~~---E~LlaagsasgtiK~w 97 (825)
T KOG0267|consen 69 HESPIESLTFDTS---ERLLAAGSASGTIKVW 97 (825)
T ss_pred cCCcceeeecCcc---hhhhcccccCCceeee
Confidence 7789999999887 7999999999999999
No 130
>PRK04043 tolB translocation protein TolB; Provisional
Probab=54.84 E-value=79 Score=26.08 Aligned_cols=70 Identities=14% Similarity=0.171 Sum_probs=42.4
Q ss_pred eeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 25 FDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 25 fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
..-+|-|..-+.+..-+.-++...|-++++..|+.+.+.+.+. ..-...| |.-..+-+.+-+-+|+-.||
T Consensus 191 ~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g--~~~~~~~--SPDG~~la~~~~~~g~~~Iy 260 (419)
T PRK04043 191 IFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQG--MLVVSDV--SKDGSKLLLTMAPKGQPDIY 260 (419)
T ss_pred EeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCC--cEEeeEE--CCCCCEEEEEEccCCCcEEE
Confidence 3578999988756655554456688888888999988876432 2233444 32233333344555554444
No 131
>KOG1007|consensus
Probab=53.87 E-value=17 Score=30.71 Aligned_cols=67 Identities=16% Similarity=0.389 Sum_probs=42.0
Q ss_pred ceeeeeeec--CCccEEEEccccCCcccEEEEEecCCceeEEEEecccCc--eeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 23 QLFDCKWMP--CSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNA--FKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 23 T~fD~kWIP--~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~--~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
..+.-+|=| +--.|.+. +.+.|+-|.+. ..+....+|..++ ++=--|-.+ .+.+|||++=||.++||
T Consensus 172 ~ftsg~WspHHdgnqv~tt-----~d~tl~~~D~R--T~~~~~sI~dAHgq~vrdlDfNpn--kq~~lvt~gDdgyvriW 242 (370)
T KOG1007|consen 172 SFTSGAWSPHHDGNQVATT-----SDSTLQFWDLR--TMKKNNSIEDAHGQRVRDLDFNPN--KQHILVTCGDDGYVRIW 242 (370)
T ss_pred eecccccCCCCccceEEEe-----CCCcEEEEEcc--chhhhcchhhhhcceeeeccCCCC--ceEEEEEcCCCccEEEE
Confidence 345666776 23334433 35778888876 4445555554443 333344333 37899999999999999
No 132
>KOG1517|consensus
Probab=52.50 E-value=15 Score=35.56 Aligned_cols=62 Identities=21% Similarity=0.369 Sum_probs=49.1
Q ss_pred ecCCccEEEEccccCCcccEEEEEecCCceeEEEEec-----ccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 30 MPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-----KPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 30 IP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-----~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
|..-|.+++.|+- +-|.||.+++..|+.++..+ +.-+.-|-+|-.-. -+||+|.-|-.+.||
T Consensus 1312 VH~hapiiAsGs~----q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~---~llAaG~~Ds~V~iY 1378 (1387)
T KOG1517|consen 1312 VHEHAPIIASGSA----QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHR---LLLAAGSADSTVSIY 1378 (1387)
T ss_pred eccCCCeeeecCc----ceEEEEecChhhhcccccCcccccCcCCCcceeeecchh---HhhhhccCCceEEEe
Confidence 6777899998843 89999999999999999775 34455788886653 579999777777775
No 133
>KOG0263|consensus
Probab=51.99 E-value=34 Score=31.30 Aligned_cols=63 Identities=22% Similarity=0.613 Sum_probs=46.8
Q ss_pred eeeecCCccEEEEccccCCcccEEEEEecCCce-eEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 27 CKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQP-ELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 27 ~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l-~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
++.=|+|+ .|.-| ...=+.++|....|.. .+. .-+..++-+..|-+. -|+||+||=||.+.||
T Consensus 541 v~FHPNs~-Y~aTG---SsD~tVRlWDv~~G~~VRiF--~GH~~~V~al~~Sp~---Gr~LaSg~ed~~I~iW 604 (707)
T KOG0263|consen 541 VSFHPNSN-YVATG---SSDRTVRLWDVSTGNSVRIF--TGHKGPVTALAFSPC---GRYLASGDEDGLIKIW 604 (707)
T ss_pred EEECCccc-ccccC---CCCceEEEEEcCCCcEEEEe--cCCCCceEEEEEcCC---CceEeecccCCcEEEE
Confidence 45556665 44455 2455799999987753 333 238889999999774 6999999999999999
No 134
>KOG0293|consensus
Probab=51.22 E-value=27 Score=30.69 Aligned_cols=76 Identities=9% Similarity=0.202 Sum_probs=52.3
Q ss_pred hhhcCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCC------CCCceEEEe
Q psy9278 16 VEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASP------LSERYLATG 89 (98)
Q Consensus 16 i~ksl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSs------l~~r~lAtG 89 (98)
.-.++.++|-=+.|=|.+..+|++|. .-++..|+.+.|++....+.-...+.-|+..-.-. .+.|++..=
T Consensus 264 tlvgh~~~V~yi~wSPDdryLlaCg~----~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~w 339 (519)
T KOG0293|consen 264 TLVGHSQPVSYIMWSPDDRYLLACGF----DEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMW 339 (519)
T ss_pred eeecccCceEEEEECCCCCeEEecCc----hHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEe
Confidence 33466678888999999999999994 44599999999988777665544444444332221 234666666
Q ss_pred ecCceE
Q psy9278 90 DFEGKL 95 (98)
Q Consensus 90 df~G~L 95 (98)
|+||++
T Consensus 340 dlDgn~ 345 (519)
T KOG0293|consen 340 DLDGNI 345 (519)
T ss_pred cCCcch
Confidence 777764
No 135
>KOG1063|consensus
Probab=51.12 E-value=75 Score=29.41 Aligned_cols=73 Identities=16% Similarity=0.328 Sum_probs=48.8
Q ss_pred cCCcceeeeeeecCCcc--EEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEE
Q psy9278 19 SLDYQLFDCKWMPCSAK--FIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQ 96 (98)
Q Consensus 19 sl~yT~fD~kWIP~SAr--fV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~ 96 (98)
...-.+..++|+|+|-+ |+|.| ...|.+.+|+|...-+.++..++. +..-|.-+-|-+... ++-.=+|...
T Consensus 52 GH~a~VnC~~~l~~s~~~a~~vsG---~sD~~v~lW~l~~~~~~~i~~~~g-~~~~~~cv~a~~~~~---~~~~ad~~v~ 124 (764)
T KOG1063|consen 52 GHVARVNCVHWLPTSEIVAEMVSG---DSDGRVILWKLRDEYLIKIYTIQG-HCKECVCVVARSSVM---TCKAADGTVS 124 (764)
T ss_pred CCccceEEEEEcccccccceEEEc---cCCCcEEEEEEeehheEEEEeecC-cceeEEEEEeeeeEE---EeeccCceEE
Confidence 33445788999999872 55555 358999999999888999999987 666666554433111 1113556666
Q ss_pred eC
Q psy9278 97 IW 98 (98)
Q Consensus 97 iw 98 (98)
+|
T Consensus 125 vw 126 (764)
T KOG1063|consen 125 VW 126 (764)
T ss_pred Ee
Confidence 65
No 136
>PF12518 DUF3721: Protein of unknown function; InterPro: IPR022196 This domain family is found in bacteria and eukaryotes, and is approximately 30 amino acids in length. There is a conserved WMPC sequence motif. There are two completely conserved residues (A and C) that may be functionally important.
Probab=50.00 E-value=5.9 Score=22.97 Aligned_cols=8 Identities=75% Similarity=1.643 Sum_probs=6.3
Q ss_pred eeeecCCc
Q psy9278 27 CKWMPCSA 34 (98)
Q Consensus 27 ~kWIP~SA 34 (98)
-+|+||+.
T Consensus 24 ~~WMPC~~ 31 (34)
T PF12518_consen 24 DKWMPCSN 31 (34)
T ss_pred CccccCcc
Confidence 38999974
No 137
>KOG1034|consensus
Probab=49.90 E-value=97 Score=26.51 Aligned_cols=76 Identities=25% Similarity=0.583 Sum_probs=53.3
Q ss_pred CCcceeeeeeecCCc---cEEEEccccCCcccEEEEEecCC---------------------ceeEEEEecccCcee---
Q psy9278 20 LDYQLFDCKWMPCSA---KFIVLGMKPKGTGSIQMYEINDG---------------------QPELVKTVEKPNAFK--- 72 (98)
Q Consensus 20 l~yT~fD~kWIP~SA---rfV~lG~~prgtG~iqIyeL~~~---------------------~l~~~~e~e~~~~~K--- 72 (98)
-+-..|-|.|.=.+- -|+++|. -.|+|+|.++..+ +.+++-...+++++|
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G---~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwn 164 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGG---YLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWN 164 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeec---ceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEe
Confidence 345678899987765 4888885 4799999998876 334555555666663
Q ss_pred -----e-eecCCC------------CCCCceEEEeecCceEEeC
Q psy9278 73 -----C-GTFNAS------------PLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 73 -----C-~TFgaS------------sl~~r~lAtGdf~G~L~iw 98 (98)
| +-||.- ++.-+.||.+.+|-+|++|
T Consensus 165 I~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W 208 (385)
T KOG1034|consen 165 IQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLW 208 (385)
T ss_pred ccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEE
Confidence 5 345432 3445688999999999988
No 138
>KOG0306|consensus
Probab=49.04 E-value=32 Score=32.16 Aligned_cols=50 Identities=20% Similarity=0.447 Sum_probs=37.5
Q ss_pred CcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 45 GTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 45 gtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
..|.+|||.+..+++ ++.=.-+++++-|--|-. .+ -.||+|+-||.+-+|
T Consensus 85 aDGsVqif~~~s~~~-~~tfngHK~AVt~l~fd~--~G-~rlaSGskDt~IIvw 134 (888)
T KOG0306|consen 85 ADGSVQIFSLESEEI-LITFNGHKAAVTTLKFDK--IG-TRLASGSKDTDIIVW 134 (888)
T ss_pred cCceEEeeccCCCce-eeeecccccceEEEEEcc--cC-ceEeecCCCccEEEE
Confidence 479999999876633 333444888888888832 22 369999999999988
No 139
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=48.64 E-value=77 Score=27.66 Aligned_cols=61 Identities=18% Similarity=0.146 Sum_probs=45.9
Q ss_pred eecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCC---CceEEEe-ecCceEE
Q psy9278 29 WMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLS---ERYLATG-DFEGKLQ 96 (98)
Q Consensus 29 WIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~---~r~lAtG-df~G~L~ 96 (98)
-.+-.-.||+++.. .|.|.+++-.|+.-.|++++|.+.+- |..|+|- +..+|+= +++|...
T Consensus 401 ~~~~~~~~vaI~g~-~G~~~ikLvlid~~tLev~kes~~~i------~~~S~l~~~~~~iyaVv~~~~g~~~ 465 (489)
T PF05262_consen 401 FYEREDDLVAIAGC-SGNAAIKLVLIDPETLEVKKESEDEI------SWQSSLIVDGQMIYAVVKKDNGKWY 465 (489)
T ss_pred eEEcCCCEEEEecc-CCchheEEEecCcccceeeeeccccc------cccCceEEcCCeEEEEEEcCCCeEE
Confidence 34556669999988 99999999999999999999988653 4445432 5566666 6777653
No 140
>KOG0270|consensus
Probab=47.90 E-value=35 Score=29.76 Aligned_cols=63 Identities=16% Similarity=0.219 Sum_probs=45.0
Q ss_pred CCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 32 CSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 32 ~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
+.+-+++. ..+.+++.+|.+...+-+.+++-+..-+.-|| |.-..--..+||+|.=++.+.||
T Consensus 384 ~~p~~l~t---~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c-~~~~~~~a~~la~GG~k~~~~vw 446 (463)
T KOG0270|consen 384 QTPGLLST---ASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHC-FALDPDVAFTLAFGGEKAVLRVW 446 (463)
T ss_pred CCCcceee---ccccceEEEEeecCCCCcccccccccccceee-cccCCCcceEEEecCccceEEEe
Confidence 33444444 34678999999999998888887766665332 33333446799999999999998
No 141
>KOG0265|consensus
Probab=47.73 E-value=65 Score=27.14 Aligned_cols=68 Identities=12% Similarity=0.287 Sum_probs=45.8
Q ss_pred ceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeec-CCCCCCCceEEEeecCceEEeC
Q psy9278 23 QLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTF-NASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 23 T~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TF-gaSsl~~r~lAtGdf~G~L~iw 98 (98)
-+-|++|.+.+.-++.+| ..=.+..|++..|+-. +...-.. +|..= -.+.-+..-+++|.-||.|.||
T Consensus 92 AVM~l~~~~d~s~i~S~g----tDk~v~~wD~~tG~~~--rk~k~h~--~~vNs~~p~rrg~~lv~SgsdD~t~kl~ 160 (338)
T KOG0265|consen 92 AVMELHGMRDGSHILSCG----TDKTVRGWDAETGKRI--RKHKGHT--SFVNSLDPSRRGPQLVCSGSDDGTLKLW 160 (338)
T ss_pred eeEeeeeccCCCEEEEec----CCceEEEEecccceee--ehhcccc--ceeeecCccccCCeEEEecCCCceEEEE
Confidence 467999999999999998 5567889998877532 2111111 11100 1334445578999999999998
No 142
>PRK01029 tolB translocation protein TolB; Provisional
Probab=46.31 E-value=71 Score=26.21 Aligned_cols=39 Identities=10% Similarity=0.244 Sum_probs=29.0
Q ss_pred eeeecCCcc--EEEEccccCCcccEEEEEecCCceeEEEEec
Q psy9278 27 CKWMPCSAK--FIVLGMKPKGTGSIQMYEINDGQPELVKTVE 66 (98)
Q Consensus 27 ~kWIP~SAr--fV~lG~~prgtG~iqIyeL~~~~l~~~~e~e 66 (98)
=+|-|...+ |+.+ +..+|...|-++.|++|+-+.+...+
T Consensus 190 P~wSPDG~~~~~~y~-S~~~g~~~I~~~~l~~g~~~~lt~~~ 230 (428)
T PRK01029 190 PTWMHIGSGFPYLYV-SYKLGVPKIFLGSLENPAGKKILALQ 230 (428)
T ss_pred ceEccCCCceEEEEE-EccCCCceEEEEECCCCCceEeecCC
Confidence 389999988 4435 45557777888889999887777654
No 143
>KOG0319|consensus
Probab=46.07 E-value=71 Score=29.62 Aligned_cols=58 Identities=22% Similarity=0.477 Sum_probs=46.3
Q ss_pred CccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 33 SAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 33 SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
.-++++-|+.-| ..+||.|. .+.++.-.. +.+++=|..|+..+ .-|||-+=|+.+.||
T Consensus 474 ndkLiAT~SqDk---taKiW~le--~~~l~~vLsGH~RGvw~V~Fs~~d---q~laT~SgD~TvKIW 532 (775)
T KOG0319|consen 474 NDKLIATGSQDK---TAKIWDLE--QLRLLGVLSGHTRGVWCVSFSKND---QLLATCSGDKTVKIW 532 (775)
T ss_pred CCceEEeccccc---ceeeeccc--CceEEEEeeCCccceEEEEecccc---ceeEeccCCceEEEE
Confidence 346777776655 57899999 555555555 89999999998874 689999999999999
No 144
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=45.97 E-value=1.2e+02 Score=22.28 Aligned_cols=51 Identities=22% Similarity=0.324 Sum_probs=37.5
Q ss_pred cCCccEEEEccccCCcccEEEEEecCC--ce-eEEEEecccCceeeeecCCCCCCCceEEEee
Q psy9278 31 PCSAKFIVLGMKPKGTGSIQMYEINDG--QP-ELVKTVEKPNAFKCGTFNASPLSERYLATGD 90 (98)
Q Consensus 31 P~SArfV~lG~~prgtG~iqIyeL~~~--~l-~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGd 90 (98)
++..+++++..+- .|.||+.+.+ +. +.++|+.-|...+..+|- ...|+.|.
T Consensus 102 ~~~~~~L~va~kk----~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~-----~~~i~v~~ 155 (275)
T PF00780_consen 102 HEGSRRLCVAVKK----KILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL-----GNKICVGT 155 (275)
T ss_pred cccceEEEEEECC----EEEEEEEECCcccccceeEEEEcCCCcEEEEEe-----CCEEEEEe
Confidence 3444555555333 9999999885 56 899999999999999987 33566664
No 145
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=45.71 E-value=58 Score=29.81 Aligned_cols=64 Identities=9% Similarity=0.176 Sum_probs=49.6
Q ss_pred CCccEEEEccccCCcccEEEEEecC--CceeEEEEecccCceeeeecCCCCCCCc---eEEEeecCceEEeC
Q psy9278 32 CSAKFIVLGMKPKGTGSIQMYEIND--GQPELVKTVEKPNAFKCGTFNASPLSER---YLATGDFEGKLQIW 98 (98)
Q Consensus 32 ~SArfV~lG~~prgtG~iqIyeL~~--~~l~~~~e~e~~~~~KC~TFgaSsl~~r---~lAtGdf~G~L~iw 98 (98)
..+|++++|. .+..|.|+.... .+.-...+.+..+-|=|.+|=...+... .+++.|-.|+|-+|
T Consensus 175 ~~~rlIAVSs---Ns~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~ 243 (717)
T PF08728_consen 175 KKSRLIAVSS---NSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTF 243 (717)
T ss_pred CcceEEEEec---CCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEE
Confidence 5579999985 456777776644 4555556778899999999987776554 89999999999875
No 146
>KOG0305|consensus
Probab=45.00 E-value=78 Score=27.61 Aligned_cols=60 Identities=22% Similarity=0.417 Sum_probs=42.9
Q ss_pred eeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec--ccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 27 CKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE--KPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 27 ~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e--~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
..|= ++-.|+||.-+ .+-+|+-..+++..+.+++ ...++++. ..-++||+|.-+|.+.||
T Consensus 183 ldWs--s~n~laValg~----~vylW~~~s~~v~~l~~~~~~~vtSv~ws------~~G~~LavG~~~g~v~iw 244 (484)
T KOG0305|consen 183 LDWS--SANVLAVALGQ----SVYLWSASSGSVTELCSFGEELVTSVKWS------PDGSHLAVGTSDGTVQIW 244 (484)
T ss_pred hhcc--cCCeEEEEecc----eEEEEecCCCceEEeEecCCCceEEEEEC------CCCCEEEEeecCCeEEEE
Confidence 4675 66677776322 5778888888888888884 34444443 235799999999999998
No 147
>KOG0279|consensus
Probab=44.66 E-value=40 Score=28.12 Aligned_cols=49 Identities=14% Similarity=0.310 Sum_probs=35.7
Q ss_pred EEEEEecCC------ceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 49 IQMYEINDG------QPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 49 iqIyeL~~~------~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
|.||+|+.+ +++.+.+..+.....|-+-.-|.- -.+|-+|+-||-|++|
T Consensus 256 IkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~d-G~tLf~g~td~~irv~ 310 (315)
T KOG0279|consen 256 IKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSAD-GQTLFAGYTDNVIRVW 310 (315)
T ss_pred eEEEeccchhhhhhccccccccccccCCcEEEEEEEcCC-CcEEEeeecCCcEEEE
Confidence 999999887 344555545666777776654433 3489999999999987
No 148
>KOG0771|consensus
Probab=44.66 E-value=20 Score=30.70 Aligned_cols=27 Identities=11% Similarity=0.386 Sum_probs=21.2
Q ss_pred hcCCcceeeeeeecCCccEEEEccccC
Q psy9278 18 KSLDYQLFDCKWMPCSAKFIVLGMKPK 44 (98)
Q Consensus 18 ksl~yT~fD~kWIP~SArfV~lG~~pr 44 (98)
..+.|-+|-.||||.-...|..|.-+-
T Consensus 10 ~~~g~PiYa~~~i~s~~llvagggg~~ 36 (398)
T KOG0771|consen 10 YEVGFPIYAAKWINSRHLLVAGGGGQA 36 (398)
T ss_pred cccCCceEEEEeeCCCceEEEeccCcc
Confidence 345677899999999999998875443
No 149
>KOG0308|consensus
Probab=44.52 E-value=19 Score=32.89 Aligned_cols=52 Identities=15% Similarity=0.442 Sum_probs=39.0
Q ss_pred CcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 45 GTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 45 gtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
..=.+.+|..+.+.--+.+-+. +..-+||...-|.. +.-+|+|.||+++.||
T Consensus 93 sDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~--~~lvaSgGLD~~IflW 145 (735)
T KOG0308|consen 93 SDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKN--NELVASGGLDRKIFLW 145 (735)
T ss_pred CCceEEEeecccCcchhHhhhhcccchheeeeecccC--ceeEEecCCCccEEEE
Confidence 3446788888777534444443 77889999987665 5579999999999998
No 150
>KOG1539|consensus
Probab=43.67 E-value=57 Score=30.71 Aligned_cols=52 Identities=23% Similarity=0.621 Sum_probs=38.0
Q ss_pred cCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCC------------CCceEEEeecCceEEeC
Q psy9278 31 PCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPL------------SERYLATGDFEGKLQIW 98 (98)
Q Consensus 31 P~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl------------~~r~lAtGdf~G~L~iw 98 (98)
-+--.|+++|. .+|.|.+|+|+. ++.=++||.+.+ .+|.+.+++.+|-|..|
T Consensus 457 s~CGNF~~IG~---S~G~Id~fNmQS-------------Gi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw 520 (910)
T KOG1539|consen 457 SFCGNFVFIGY---SKGTIDRFNMQS-------------GIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFW 520 (910)
T ss_pred eccCceEEEec---cCCeEEEEEccc-------------CeeecccccCccccCceeEEEecCCCceEEEccCcceEEEE
Confidence 34456788874 689999999764 455577873332 26779999999999887
No 151
>KOG1523|consensus
Probab=43.46 E-value=83 Score=26.74 Aligned_cols=77 Identities=13% Similarity=0.212 Sum_probs=51.1
Q ss_pred hhhhcCCcceeeeeeecCCccEEEEccccCCcccEEEEEe-cCCceeEEEE-ecccCceeeeecCCCCCCCceEEEeecC
Q psy9278 15 LVEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEI-NDGQPELVKT-VEKPNAFKCGTFNASPLSERYLATGDFE 92 (98)
Q Consensus 15 hi~ksl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL-~~~~l~~~~e-~e~~~~~KC~TFgaSsl~~r~lAtGdf~ 92 (98)
|.-+..+=++-.+-|-|.|-|+|.++ ++|+. -||++ ++++-+.+-+ .|.-.+-+|...... +..||+|+=.
T Consensus 49 htls~Hd~~vtgvdWap~snrIvtcs-~drna---yVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~---enkFAVgSga 121 (361)
T KOG1523|consen 49 HTLSEHDKIVTGVDWAPKSNRIVTCS-HDRNA---YVWTQPSGGTWKPTLVLLRINRAATCVKWSPK---ENKFAVGSGA 121 (361)
T ss_pred eehhhhCcceeEEeecCCCCceeEcc-CCCCc---cccccCCCCeeccceeEEEeccceeeEeecCc---CceEEeccCc
Confidence 44445555666789999999999877 56653 57888 7775443332 234567788877443 4578888766
Q ss_pred ceEEeC
Q psy9278 93 GKLQIW 98 (98)
Q Consensus 93 G~L~iw 98 (98)
-.+.||
T Consensus 122 r~isVc 127 (361)
T KOG1523|consen 122 RLISVC 127 (361)
T ss_pred cEEEEE
Confidence 666554
No 152
>KOG2111|consensus
Probab=43.01 E-value=40 Score=28.42 Aligned_cols=62 Identities=21% Similarity=0.378 Sum_probs=44.2
Q ss_pred ecCCccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceE
Q psy9278 30 MPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKL 95 (98)
Q Consensus 30 IP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L 95 (98)
.|.+++-+++ ---+.+|.+||-.|...+..--..++ ++..|.|.+- +++-.-+||++=+|.|
T Consensus 143 ~~~~~k~~La-fPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~L---n~~Gt~vATaStkGTL 205 (346)
T KOG2111|consen 143 CPTSNKSLLA-FPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVAL---NLQGTLVATASTKGTL 205 (346)
T ss_pred cCCCCceEEE-cCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEE---cCCccEEEEeccCcEE
Confidence 4555554433 12355799999999998885334444 8899999954 4455689999999987
No 153
>PF01394 Clathrin_propel: Clathrin propeller repeat; InterPro: IPR022365 This entry represents the propeller repeat found in clathrin heavy chains. The N terminus of the heavy chain is known as the globular domain, and is composed of seven repeats which form a beta propeller []. Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. More information about these proteins can be found at Protein of the Month: Clathrin [].; PDB: 1UTC_B 3GD1_I 3GC3_B 1BPO_C 1C9I_B 1C9L_A 2XZG_A 2XZH_A.
Probab=41.88 E-value=32 Score=19.45 Aligned_cols=25 Identities=20% Similarity=0.569 Sum_probs=18.0
Q ss_pred cCCccEEEEccccCCcccEEEEEec
Q psy9278 31 PCSAKFIVLGMKPKGTGSIQMYEIN 55 (98)
Q Consensus 31 P~SArfV~lG~~prgtG~iqIyeL~ 55 (98)
|.-+-..++|-.-+-.|.+++|+++
T Consensus 13 ~~es~~~iigi~~~~~G~v~l~sve 37 (37)
T PF01394_consen 13 PMESWKFIIGISGRVKGQVQLYSVE 37 (37)
T ss_dssp CCCEEEEEEEEETCTEEEEEEEETT
T ss_pred CCcCeEEEEEEEeeeeeEEEEEECC
Confidence 3334456677777789999999874
No 154
>KOG2314|consensus
Probab=40.76 E-value=25 Score=31.88 Aligned_cols=68 Identities=22% Similarity=0.389 Sum_probs=45.0
Q ss_pred CCcceeeeeeecCCccEEEEccccCCcccEEEEEec--CCceeEEEEecccCceeeeecCCCCCCCceEEEeecC
Q psy9278 20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEIN--DGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFE 92 (98)
Q Consensus 20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~--~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~ 92 (98)
|.-+++-..|=|.+.||+++-.... +-.++.|..+ ..+.++|++++|.. |-|-.-| ..-|-++.+.+-
T Consensus 444 lke~vi~FaWEP~gdkF~vi~g~~~-k~tvsfY~~e~~~~~~~lVk~~dk~~---~N~vfws-PkG~fvvva~l~ 513 (698)
T KOG2314|consen 444 LKESVIAFAWEPHGDKFAVISGNTV-KNTVSFYAVETNIKKPSLVKELDKKF---ANTVFWS-PKGRFVVVAALV 513 (698)
T ss_pred cchheeeeeeccCCCeEEEEEcccc-ccceeEEEeecCCCchhhhhhhcccc---cceEEEc-CCCcEEEEEEec
Confidence 3456677889999999988743333 6679999986 55899999998842 3332222 234556655543
No 155
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=40.53 E-value=1.5e+02 Score=23.00 Aligned_cols=41 Identities=15% Similarity=0.062 Sum_probs=28.0
Q ss_pred cceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEE
Q psy9278 22 YQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVK 63 (98)
Q Consensus 22 yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~ 63 (98)
...+...|-|...+|++..+ ..+...|-+|+++.++.+.+.
T Consensus 234 ~~~~~~~~spDg~~l~~~~~-~~~~~~i~~~d~~~~~~~~l~ 274 (417)
T TIGR02800 234 GMNGAPAFSPDGSKLAVSLS-KDGNPDIYVMDLDGKQLTRLT 274 (417)
T ss_pred CCccceEECCCCCEEEEEEC-CCCCccEEEEECCCCCEEECC
Confidence 34566889999888876643 345566777788777665554
No 156
>KOG0649|consensus
Probab=40.49 E-value=37 Score=28.19 Aligned_cols=57 Identities=18% Similarity=0.198 Sum_probs=36.8
Q ss_pred hcCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEE-EecccCceeeeecCCCCCC
Q psy9278 18 KSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVK-TVEKPNAFKCGTFNASPLS 82 (98)
Q Consensus 18 ksl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~-e~e~~~~~KC~TFgaSsl~ 82 (98)
|.+..|+|...|-|+ +||.+.| +.-|.|-|+.|+.- ++ +-|.+...|=.+|.|+.-+
T Consensus 7 ~r~~~tvf~qa~sp~-~~~l~ag---n~~G~iav~sl~sl----~s~sa~~~gk~~iv~eqahdgp 64 (325)
T KOG0649|consen 7 KRAYNTVFAQAISPS-KQYLFAG---NLFGDIAVLSLKSL----DSGSAEPPGKLKIVPEQAHDGP 64 (325)
T ss_pred HHHHHHHHHHhhCCc-ceEEEEe---cCCCeEEEEEehhh----hccccCCCCCcceeeccccCCC
Confidence 345579999999995 7888888 46789999888632 11 1133334455566665544
No 157
>TIGR01922 purO_arch IMP cyclohydrolase. This model represents IMP cyclohydrolase, the final step in the biosynthesis of inosine monophosphate (IMP) in archaea. In bacteria this step is catalyzed by a bifunctional enzyme (purH).
Probab=39.96 E-value=65 Score=25.24 Aligned_cols=48 Identities=17% Similarity=0.251 Sum_probs=32.1
Q ss_pred ccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCC
Q psy9278 34 AKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLS 82 (98)
Q Consensus 34 ArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~ 82 (98)
-||+++|..++|+= +..|-+......--.-++...+++-.-|-.+.+.
T Consensus 4 GR~ivvG~s~dG~~-~~aY~V~sRSfpnR~~v~~~~~i~~~p~d~~~~~ 51 (199)
T TIGR01922 4 GRFLVVGKLEDGTP-FAAYRVSSRSFPNRRIEVREGAVAVVPEDPSEIT 51 (199)
T ss_pred CCEEEEccCCCCCe-EEEEEEecCCCCCcceEecCCcEEEeeCChhhcc
Confidence 38999999999988 8888886654433333344557776666555443
No 158
>PF13517 VCBS: Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella; PDB: 2C25_A 2BWR_B 2C4D_A 2BWM_A.
Probab=39.86 E-value=44 Score=19.41 Aligned_cols=38 Identities=21% Similarity=0.294 Sum_probs=21.2
Q ss_pred cccEEEEEecC-CceeEEEEecccCceeeeecCCCCCCCceEEEeecCc
Q psy9278 46 TGSIQMYEIND-GQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEG 93 (98)
Q Consensus 46 tG~iqIyeL~~-~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G 93 (98)
.+.+.+|..++ +.+......+-+.+ ...+.++.|||+|
T Consensus 15 ~~~~~~~~~~~~g~~~~~~~~~~~~~----------~~~~~~~~~D~d~ 53 (61)
T PF13517_consen 15 DGSVYVYLNDGDGTFQFPAQIPFSSS----------GSGWSVAFADIDG 53 (61)
T ss_dssp SSSEEEEEB-SSS-BEEEEEEBTTCS----------GGTTTTCEE-SSS
T ss_pred CCCeEEEEECCCCCeEEeeeEeeCCC----------CCcceeEEEEccC
Confidence 35688888764 56665555533322 2344689999986
No 159
>PRK03629 tolB translocation protein TolB; Provisional
Probab=39.61 E-value=95 Score=25.25 Aligned_cols=40 Identities=18% Similarity=0.158 Sum_probs=27.7
Q ss_pred eeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEE
Q psy9278 24 LFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKT 64 (98)
Q Consensus 24 ~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e 64 (98)
..+..|-|...+++.+... .|.-.|-+|+++.++++.+.+
T Consensus 245 ~~~~~~SPDG~~La~~~~~-~g~~~I~~~d~~tg~~~~lt~ 284 (429)
T PRK03629 245 NGAPAFSPDGSKLAFALSK-TGSLNLYVMDLASGQIRQVTD 284 (429)
T ss_pred cCCeEECCCCCEEEEEEcC-CCCcEEEEEECCCCCEEEccC
Confidence 3467999999888877542 333357777888887766543
No 160
>PRK01029 tolB translocation protein TolB; Provisional
Probab=39.40 E-value=1.3e+02 Score=24.75 Aligned_cols=39 Identities=23% Similarity=0.359 Sum_probs=31.0
Q ss_pred eeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEE
Q psy9278 25 FDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKT 64 (98)
Q Consensus 25 fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e 64 (98)
.+..|-|..-+++.+.. .+|...|.+|+++.++.+.+.+
T Consensus 330 ~~p~wSPDG~~Laf~~~-~~g~~~I~v~dl~~g~~~~Lt~ 368 (428)
T PRK01029 330 SCPAWSPDGKKIAFCSV-IKGVRQICVYDLATGRDYQLTT 368 (428)
T ss_pred cceeECCCCCEEEEEEc-CCCCcEEEEEECCCCCeEEccC
Confidence 56789999988887764 4567789999999998877764
No 161
>KOG0268|consensus
Probab=39.22 E-value=11 Score=32.41 Aligned_cols=13 Identities=38% Similarity=1.127 Sum_probs=0.0
Q ss_pred EEEeecCceEEeC
Q psy9278 86 LATGDFEGKLQIW 98 (98)
Q Consensus 86 lAtGdf~G~L~iw 98 (98)
+|+|++||.+.||
T Consensus 82 ~aSGs~DG~VkiW 94 (433)
T KOG0268|consen 82 VASGSCDGEVKIW 94 (433)
T ss_pred hhccccCceEEEE
No 162
>KOG0302|consensus
Probab=38.95 E-value=1.3e+02 Score=26.25 Aligned_cols=75 Identities=12% Similarity=0.333 Sum_probs=53.8
Q ss_pred hcCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCce-eEEEEec-ccCceeeeecCCCCCCCceEEEeecCceE
Q psy9278 18 KSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQP-ELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKL 95 (98)
Q Consensus 18 ksl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l-~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L 95 (98)
|..+--|.-+-|=-.-. |++-| ...|+++||.|..=+. +.|.+++ +..+|-|.-|-+. .+..||++.=|-.+
T Consensus 299 kAh~sDVNVISWnr~~~-lLasG---~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~--e~s~iaasg~D~Qi 372 (440)
T KOG0302|consen 299 KAHNSDVNVISWNRREP-LLASG---GDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPH--EDSVIAASGEDNQI 372 (440)
T ss_pred eccCCceeeEEccCCcc-eeeec---CCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccc--cCceEEeccCCCcE
Confidence 44444556666644433 67666 3589999999954432 6777877 8889999999543 35679999999999
Q ss_pred EeC
Q psy9278 96 QIW 98 (98)
Q Consensus 96 ~iw 98 (98)
.||
T Consensus 373 tiW 375 (440)
T KOG0302|consen 373 TIW 375 (440)
T ss_pred EEE
Confidence 998
No 163
>KOG2314|consensus
Probab=38.71 E-value=26 Score=31.83 Aligned_cols=57 Identities=19% Similarity=0.458 Sum_probs=44.1
Q ss_pred CccceehhhhhcCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEeccc
Q psy9278 8 DKPQIICLVEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKP 68 (98)
Q Consensus 8 ~kPQIIehi~ksl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~ 68 (98)
.+|.+|.-+.|..-.|+| |-|. -||||++..-...|.++.|.++-.+++.+...|++
T Consensus 482 ~~~~lVk~~dk~~~N~vf---wsPk-G~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~ 538 (698)
T KOG2314|consen 482 KKPSLVKELDKKFANTVF---WSPK-GRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHF 538 (698)
T ss_pred CchhhhhhhcccccceEE---EcCC-CcEEEEEEecccccceEEEecchhhhhhccCcccc
Confidence 456666666665555555 9997 58999998887899999999998888888777764
No 164
>PF00965 TIMP: Tissue inhibitor of metalloproteinase; InterPro: IPR001820 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Tissue inhibitors of metalloproteinases (TIMPs, [, , ]) and their target matrix metalloproteinases (MMPs, MEROPS peptidase family M10A) are important in connective tissue re-modelling in diseases of the cardiovascular system and in the physiological degradation of connective tissue, as well as in pathological states such as tumour invasion and arthritis. TIMPs belong to MEROPS proteinase inhibitor family I35, clan IT. TIMPs complex with extracellular matrix metalloproteinases (such as collagenases) and irreversibly inactivate them. Members of this family are common in extracellular regions of vertebrate species []. TIMPs are proteins of about 200 amino acid residues, 12 of which are cysteines involved in disulphide bonds []. The basic structure of such a type of inhibitor is shown in the following schematic representation: +-----------------------------+ +--------------+ | | | | CxCxCxxxxxxxxxxxxxxxxxCxxxxxxxxxCxxxxxxxCxCxCxCxCxxxxxCxxCxxx | | | | | | | | | +-----------------|-----------------+ +-+ +-----+ +---------------------+ 'C': conserved cysteine involved in a disulphide bond. The crystal structure of the human proMMP-2/TIMP-2 complex reveals an interaction between the hemopexin domain of proMMP-2 and the C-terminal domain of TIMP-2, leaving the catalytic site of MMP-2 and the inhibitory site of TIMP-2 distant and spatially isolated. The interfacial contact of these two proteins is characterised by two distinct binding regions composed of alternating hydrophobic and hydrophilic interactions. This unique structure provides information for how specificity for non-inhibitory MMP/TIMP complex formation is achieved []. ; GO: 0008191 metalloendopeptidase inhibitor activity; PDB: 2E2D_C 1BUV_T 1BQQ_T 1BR9_A 1GXD_D 2TMP_A 2J0T_F 1D2B_A 3MA2_C 1UEA_B ....
Probab=38.67 E-value=83 Score=23.11 Aligned_cols=17 Identities=47% Similarity=0.896 Sum_probs=13.0
Q ss_pred CCCceEEEeec--CceEEe
Q psy9278 81 LSERYLATGDF--EGKLQI 97 (98)
Q Consensus 81 l~~r~lAtGdf--~G~L~i 97 (98)
+++++|.+|.+ ||+|.|
T Consensus 84 ~g~~YLIaG~~~~~g~l~i 102 (181)
T PF00965_consen 84 LGKEYLIAGRVVSDGKLHI 102 (181)
T ss_dssp SSSEEEEEEEEESTTEEE-
T ss_pred CCceEEEEEEecCCCcEEE
Confidence 34889999976 898875
No 165
>KOG4497|consensus
Probab=38.31 E-value=48 Score=28.60 Aligned_cols=56 Identities=20% Similarity=0.376 Sum_probs=38.1
Q ss_pred eeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEe
Q psy9278 24 LFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQI 97 (98)
Q Consensus 24 ~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~i 97 (98)
+-|+.|-|+-.-++|.-+.-.-+ || -.|..-|+|-...-.+ +|.||.|.+||.|+|
T Consensus 181 ltgieWsPdg~~laVwd~~Leyk----v~-----------aYe~~lG~k~v~wsP~---~qflavGsyD~~lrv 236 (447)
T KOG4497|consen 181 LTGIEWSPDGNWLAVWDNVLEYK----VY-----------AYERGLGLKFVEWSPC---NQFLAVGSYDQMLRV 236 (447)
T ss_pred ccCceECCCCcEEEEecchhhhe----ee-----------eeeeccceeEEEeccc---cceEEeeccchhhhh
Confidence 34778999998888876443321 11 3345566776655444 589999999999876
No 166
>KOG4378|consensus
Probab=37.81 E-value=58 Score=29.46 Aligned_cols=69 Identities=23% Similarity=0.475 Sum_probs=47.2
Q ss_pred CcceeeeeeecCCccEEEEccccCCcccEEEEEecCC--ceeEEEEecccCce--eeeecCCCCCCCceEEEeecCceEE
Q psy9278 21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDG--QPELVKTVEKPNAF--KCGTFNASPLSERYLATGDFEGKLQ 96 (98)
Q Consensus 21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~--~l~~~~e~e~~~~~--KC~TFgaSsl~~r~lAtGdf~G~L~ 96 (98)
.-++|.++| ++..|+|+-+. -|.-+|.+|+=++. ++.++...+-++.+ -|.+| .+++..|..+|-+.
T Consensus 34 ~pg~~s~~w--~~~n~lvvas~-~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~------S~y~~sgG~~~~Vk 104 (673)
T KOG4378|consen 34 EPGDFSFNW--QRRNFLVVASM-AGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQ------SLYEISGGQSGCVK 104 (673)
T ss_pred CCcceeeec--cccceEEEeec-CCceeEEEecccCCCCccceeeccccchHHHHhhhhc------ceeeeccCcCceee
Confidence 345789999 45566766643 46678888886554 46666655544333 44444 38999999999999
Q ss_pred eC
Q psy9278 97 IW 98 (98)
Q Consensus 97 iw 98 (98)
||
T Consensus 105 iw 106 (673)
T KOG4378|consen 105 IW 106 (673)
T ss_pred eh
Confidence 99
No 167
>PF13082 DUF3931: Protein of unknown function (DUF3931)
Probab=37.73 E-value=38 Score=21.96 Aligned_cols=19 Identities=21% Similarity=0.464 Sum_probs=14.0
Q ss_pred ccEEEEccccCCcccEEEE
Q psy9278 34 AKFIVLGMKPKGTGSIQMY 52 (98)
Q Consensus 34 ArfV~lG~~prgtG~iqIy 52 (98)
+.||.+|+.|.|.--+--.
T Consensus 38 ssfvlcgetpdgrrlvlth 56 (66)
T PF13082_consen 38 SSFVLCGETPDGRRLVLTH 56 (66)
T ss_pred EEEEEEccCCCCcEEEEEE
Confidence 5799999999986544333
No 168
>KOG1539|consensus
Probab=37.52 E-value=1.2e+02 Score=28.76 Aligned_cols=56 Identities=14% Similarity=0.438 Sum_probs=42.5
Q ss_pred EEEEccccCCcccEEEEEecCCceeEEEEeccc-CceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 36 FIVLGMKPKGTGSIQMYEINDGQPELVKTVEKP-NAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 36 fV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~-~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
.|++| -.+|.+-|++|..+++ +-+++++ ..+--.+|.-- ++.+||+|+=.|.|.+|
T Consensus 216 VVaiG---~~~G~ViifNlK~dki--l~sFk~d~g~VtslSFrtD--G~p~las~~~~G~m~~w 272 (910)
T KOG1539|consen 216 VVAIG---LENGTVIIFNLKFDKI--LMSFKQDWGRVTSLSFRTD--GNPLLASGRSNGDMAFW 272 (910)
T ss_pred EEEEe---ccCceEEEEEcccCcE--EEEEEccccceeEEEeccC--CCeeEEeccCCceEEEE
Confidence 46666 3689999999999875 4455555 67777888532 35689999999999988
No 169
>KOG1034|consensus
Probab=37.24 E-value=1.9e+02 Score=24.81 Aligned_cols=81 Identities=12% Similarity=0.288 Sum_probs=55.0
Q ss_pred eehhhhhcCCcceeeeeeecCCc-----cEEEEccccCCcccEEEEEecCCc----eeEEEEecccCceeeeecCCC-CC
Q psy9278 12 IICLVEKSLDYQLFDCKWMPCSA-----KFIVLGMKPKGTGSIQMYEINDGQ----PELVKTVEKPNAFKCGTFNAS-PL 81 (98)
Q Consensus 12 IIehi~ksl~yT~fD~kWIP~SA-----rfV~lG~~prgtG~iqIyeL~~~~----l~~~~e~e~~~~~KC~TFgaS-sl 81 (98)
.-.|+.++-+-.+|++.-=+-+- =|+++| .-.+.||+...+- |+...+-+++-.|=-++--.- .-
T Consensus 29 ~t~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG-----~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~ 103 (385)
T KOG1034|consen 29 YTNHLKEDHNKPIFGVAFNSFLGCDEPQVFATVG-----GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNT 103 (385)
T ss_pred eeeehhccCCCccceeeeehhcCCCCCceEEEeC-----CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCC
Confidence 34678888888888887664432 255555 5678999987663 455555667777766655332 23
Q ss_pred CCceEEEeecCceEEe
Q psy9278 82 SERYLATGDFEGKLQI 97 (98)
Q Consensus 82 ~~r~lAtGdf~G~L~i 97 (98)
.+..||+|..-|-+.|
T Consensus 104 ~~p~la~~G~~GvIrV 119 (385)
T KOG1034|consen 104 GNPFLAAGGYLGVIRV 119 (385)
T ss_pred CCeeEEeecceeEEEE
Confidence 5778999989998876
No 170
>KOG0973|consensus
Probab=36.76 E-value=84 Score=29.78 Aligned_cols=85 Identities=21% Similarity=0.287 Sum_probs=60.5
Q ss_pred eehhhhhcCCccee-eeeeecCCccEEEEccccCCcccEEEEEecCCceeEEE-EecccCceeeeecCCCCCC-------
Q psy9278 12 IICLVEKSLDYQLF-DCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVK-TVEKPNAFKCGTFNASPLS------- 82 (98)
Q Consensus 12 IIehi~ksl~yT~f-D~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~-e~e~~~~~KC~TFgaSsl~------- 82 (98)
|=++-+++.-+|.| -.-|=|+-.-+++.=..-+++-.++|.|= +.-+.-. =+-+..|+.|..|-.+-..
T Consensus 209 It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR--~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~ 286 (942)
T KOG0973|consen 209 ITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIER--GTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGT 286 (942)
T ss_pred eccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEec--CCceeeeeeecCCCceEEEEeChHHhccccccCC
Confidence 33455666667764 67899998888877777777888999874 4444333 3447889999999443211
Q ss_pred ---C----ceEEEeecCceEEeC
Q psy9278 83 ---E----RYLATGDFEGKLQIW 98 (98)
Q Consensus 83 ---~----r~lAtGdf~G~L~iw 98 (98)
. --+|+|+-|+.|+||
T Consensus 287 ~~~~~~~y~i~AvgSqDrSlSVW 309 (942)
T KOG0973|consen 287 STQPNCYYCIAAVGSQDRSLSVW 309 (942)
T ss_pred ccCCCcceEEEEEecCCccEEEE
Confidence 1 168999999999999
No 171
>KOG0771|consensus
Probab=35.83 E-value=61 Score=27.82 Aligned_cols=49 Identities=14% Similarity=0.376 Sum_probs=35.2
Q ss_pred CcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 45 GTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 45 gtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
-.|+++||+.- +-+....|.++...+||-+|..++ ..||+=.=| .++||
T Consensus 164 ~dg~lRv~~~P-s~~t~l~e~~~~~eV~DL~FS~dg---k~lasig~d-~~~VW 212 (398)
T KOG0771|consen 164 TDGTLRVWEWP-SMLTILEEIAHHAEVKDLDFSPDG---KFLASIGAD-SARVW 212 (398)
T ss_pred ccceEEEEecC-cchhhhhhHhhcCccccceeCCCC---cEEEEecCC-ceEEE
Confidence 37899999843 334566788899999999998775 356554444 55555
No 172
>KOG1445|consensus
Probab=35.70 E-value=37 Score=31.66 Aligned_cols=33 Identities=21% Similarity=0.518 Sum_probs=29.0
Q ss_pred cceeeeeeecCCccEEEEccccCCcccEEEEEecCCc
Q psy9278 22 YQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQ 58 (98)
Q Consensus 22 yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~ 58 (98)
=.+||..|-|+--+...|+ ..|.|.||+-..++
T Consensus 721 dqIf~~AWSpdGr~~AtVc----KDg~~rVy~Prs~e 753 (1012)
T KOG1445|consen 721 DQIFGIAWSPDGRRIATVC----KDGTLRVYEPRSRE 753 (1012)
T ss_pred CceeEEEECCCCcceeeee----cCceEEEeCCCCCC
Confidence 4689999999999999999 78999999966554
No 173
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=35.25 E-value=48 Score=27.19 Aligned_cols=34 Identities=15% Similarity=0.411 Sum_probs=28.6
Q ss_pred eeeeecCCccEEEEccccCCcccEEEEEecCCceeEEE
Q psy9278 26 DCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVK 63 (98)
Q Consensus 26 D~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~ 63 (98)
-+.|=|+..=++ .++++|.|+||.|.+.+|-.+.
T Consensus 48 kl~WSpD~tlLa----~a~S~G~i~vfdl~g~~lf~I~ 81 (282)
T PF15492_consen 48 KLAWSPDCTLLA----YAESTGTIRVFDLMGSELFVIP 81 (282)
T ss_pred EEEECCCCcEEE----EEcCCCeEEEEecccceeEEcC
Confidence 367888888777 6789999999999998887776
No 174
>KOG0307|consensus
Probab=34.43 E-value=52 Score=31.47 Aligned_cols=78 Identities=19% Similarity=0.336 Sum_probs=56.9
Q ss_pred hhcCCcceeeeeeecCCccE--EEEccccCCcccEEEEEecC----CceeEEEEec-ccCceeeeecCCCCCCCceEEEe
Q psy9278 17 EKSLDYQLFDCKWMPCSAKF--IVLGMKPKGTGSIQMYEIND----GQPELVKTVE-KPNAFKCGTFNASPLSERYLATG 89 (98)
Q Consensus 17 ~ksl~yT~fD~kWIP~SArf--V~lG~~prgtG~iqIyeL~~----~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtG 89 (98)
..+.+|..|+..|=+--.+- |+.|.. -.|.|-+|.-+. ++..++.... +..+++-.-|-+.. .--||.|
T Consensus 60 s~~s~~rF~kL~W~~~g~~~~GlIaGG~--edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q--~nlLASG 135 (1049)
T KOG0307|consen 60 SLQSSNRFNKLAWGSYGSHSHGLIAGGL--EDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQ--GNLLASG 135 (1049)
T ss_pred cccccccceeeeecccCCCccceeeccc--cCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccC--Cceeecc
Confidence 34678899999998877664 444422 267899998755 4666666554 66778888785543 4489999
Q ss_pred ecCceEEeC
Q psy9278 90 DFEGKLQIW 98 (98)
Q Consensus 90 df~G~L~iw 98 (98)
+=||.+-||
T Consensus 136 a~~geI~iW 144 (1049)
T KOG0307|consen 136 ADDGEILIW 144 (1049)
T ss_pred CCCCcEEEe
Confidence 999999999
No 175
>PLN02291 phospho-2-dehydro-3-deoxyheptonate aldolase
Probab=34.31 E-value=9.4 Score=33.27 Aligned_cols=40 Identities=20% Similarity=0.493 Sum_probs=36.5
Q ss_pred eeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeee
Q psy9278 27 CKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCG 74 (98)
Q Consensus 27 ~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~ 74 (98)
=+|--+||-|+-+|++.| +|++.-++..+.++.|-++|||
T Consensus 268 g~~Y~~SaH~lWIGeRTR--------qlDgAHVef~rgI~NPIGvKvG 307 (474)
T PLN02291 268 GLYYDCSAHMLWVGERTR--------QLDGAHVEFLRGVANPLGIKVS 307 (474)
T ss_pred CCcccccccccccccccC--------CCCccHHHHHhcCCCCeeEEEC
Confidence 458899999999999999 5788889999999999999998
No 176
>KOG0295|consensus
Probab=34.10 E-value=2e+02 Score=24.88 Aligned_cols=72 Identities=17% Similarity=0.318 Sum_probs=47.3
Q ss_pred ceeeeeeecCCccEEEEccccC-----------CcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeec
Q psy9278 23 QLFDCKWMPCSAKFIVLGMKPK-----------GTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDF 91 (98)
Q Consensus 23 T~fD~kWIP~SArfV~lG~~pr-----------gtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf 91 (98)
.+=.++|+|.++-=-+-+..|. -.+.|++|+++-|.. |..=.-+.+.++=..|-. .-++|+.-.=
T Consensus 279 ~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~c-L~tL~ghdnwVr~~af~p---~Gkyi~ScaD 354 (406)
T KOG0295|consen 279 PVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMC-LFTLVGHDNWVRGVAFSP---GGKYILSCAD 354 (406)
T ss_pred ceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeE-EEEEecccceeeeeEEcC---CCeEEEEEec
Confidence 4556789998874333232332 257899999999943 222223667777666632 3578888888
Q ss_pred CceEEeC
Q psy9278 92 EGKLQIW 98 (98)
Q Consensus 92 ~G~L~iw 98 (98)
|+.|++|
T Consensus 355 Dktlrvw 361 (406)
T KOG0295|consen 355 DKTLRVW 361 (406)
T ss_pred CCcEEEE
Confidence 9999998
No 177
>KOG1446|consensus
Probab=33.66 E-value=99 Score=25.76 Aligned_cols=50 Identities=24% Similarity=0.504 Sum_probs=34.6
Q ss_pred eeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCC
Q psy9278 25 FDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNA 78 (98)
Q Consensus 25 fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFga 78 (98)
-++--.|+| +||+.|+ +.|.|.||+++.|+....-+--...+..|.-|..
T Consensus 236 ~~a~ftPds-~Fvl~gs---~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP 285 (311)
T KOG1446|consen 236 LSATFTPDS-KFVLSGS---DDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNP 285 (311)
T ss_pred eeEEECCCC-cEEEEec---CCCcEEEEEcCCCcEeeEecCCCCCCccccccCC
Confidence 455566776 6888884 6899999999887655444433556677777744
No 178
>TIGR01358 DAHP_synth_II 3-deoxy-7-phosphoheptulonate synthase, class II. Homologs scoring between trusted and noise cutoff include proteins involved in antibiotic biosynthesis; one example is active as this enzyme, while another acts on an amino analog.
Probab=33.61 E-value=9.8 Score=32.89 Aligned_cols=40 Identities=23% Similarity=0.557 Sum_probs=36.3
Q ss_pred eeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeee
Q psy9278 27 CKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCG 74 (98)
Q Consensus 27 ~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~ 74 (98)
=+|--+||-|+-+|++.| +|++.-++..+.++.|-++|||
T Consensus 248 g~~Y~~SaH~lWIGeRTR--------qlDgAHVef~rgI~NPIGvKvG 287 (443)
T TIGR01358 248 GGWFDLSAHMLWIGERTR--------QLDGAHVEFLRGVRNPIGIKVG 287 (443)
T ss_pred CCcccccccccccccccC--------CCCchHHHHHhcCCCCeeEEEC
Confidence 458889999999999999 5788889999999999999998
No 179
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=33.56 E-value=1.7e+02 Score=26.34 Aligned_cols=61 Identities=15% Similarity=0.351 Sum_probs=45.3
Q ss_pred ccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 34 AKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 34 ArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
.|+.+|.+ ..=.+.||+..++.|+--...+....|+.--+-.....+--||+| |...+.|+
T Consensus 41 ~k~a~V~~---~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVG-f~~~v~l~ 101 (631)
T PF12234_consen 41 KKIAVVDS---SRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVG-FPHHVLLY 101 (631)
T ss_pred CcEEEEEC---CCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEE-cCcEEEEE
Confidence 45666632 233799999999998888888889999988887666667667776 77766653
No 180
>KOG1009|consensus
Probab=33.53 E-value=1.8e+02 Score=25.40 Aligned_cols=67 Identities=21% Similarity=0.471 Sum_probs=50.1
Q ss_pred eeeeeecCCc-cEEEEccccCCcccEEEEEecCC-------ceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceE
Q psy9278 25 FDCKWMPCSA-KFIVLGMKPKGTGSIQMYEINDG-------QPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKL 95 (98)
Q Consensus 25 fD~kWIP~SA-rfV~lG~~prgtG~iqIyeL~~~-------~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L 95 (98)
|-+--=+.|+ |+..-| |.-.|.||.++.+ +++.++.+- +..++-|+-|-.. -.-||+|+=+|.+
T Consensus 17 ~s~dfq~n~~~~laT~G----~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~---gelLASg~D~g~v 89 (434)
T KOG1009|consen 17 YSVDFQKNSLNKLATAG----GDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPD---GELLASGGDGGEV 89 (434)
T ss_pred EEEEeccCcccceeccc----CccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCC---cCeeeecCCCceE
Confidence 3344456777 666666 7778999999765 566666655 8889999999544 2479999999999
Q ss_pred EeC
Q psy9278 96 QIW 98 (98)
Q Consensus 96 ~iw 98 (98)
.||
T Consensus 90 ~lW 92 (434)
T KOG1009|consen 90 FLW 92 (434)
T ss_pred EEE
Confidence 998
No 181
>PRK04792 tolB translocation protein TolB; Provisional
Probab=33.45 E-value=1.6e+02 Score=24.17 Aligned_cols=39 Identities=13% Similarity=0.124 Sum_probs=25.7
Q ss_pred eeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEE
Q psy9278 25 FDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKT 64 (98)
Q Consensus 25 fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e 64 (98)
+...|-|...++++... .+|.-.|-+++++.++++.+..
T Consensus 265 ~~~~wSPDG~~La~~~~-~~g~~~Iy~~dl~tg~~~~lt~ 303 (448)
T PRK04792 265 GAPRFSPDGKKLALVLS-KDGQPEIYVVDIATKALTRITR 303 (448)
T ss_pred CCeeECCCCCEEEEEEe-CCCCeEEEEEECCCCCeEECcc
Confidence 45789999988887653 2344445556677777765544
No 182
>COG1998 RPS31 Ribosomal protein S27AE [Translation, ribosomal structure and biogenesis]
Probab=33.13 E-value=50 Score=20.82 Aligned_cols=36 Identities=28% Similarity=0.538 Sum_probs=22.3
Q ss_pred cEEEEEecCCceeEEEEecccCceeee--ecCCCCCCCceEEEe
Q psy9278 48 SIQMYEINDGQPELVKTVEKPNAFKCG--TFNASPLSERYLATG 89 (98)
Q Consensus 48 ~iqIyeL~~~~l~~~~e~e~~~~~KC~--TFgaSsl~~r~lAtG 89 (98)
+...|++++++++..+.. =| +|| +|=|.-.. .+++|
T Consensus 4 ~~~yY~v~~~kv~rk~~~-CP---rCG~gvfmA~H~d--R~~CG 41 (51)
T COG1998 4 VLKYYEVDDEKVKRKNRF-CP---RCGPGVFMADHKD--RWACG 41 (51)
T ss_pred ceeEEEEcCCcEEEcccc-CC---CCCCcchhhhcCc--eeEec
Confidence 467899999984433322 22 598 88766533 46665
No 183
>PF05567 Neisseria_PilC: Neisseria PilC beta-propeller domain; InterPro: IPR008707 This domain is found in several PilC protein sequences from Neisseria gonorrhoeae and Neisseria meningitidis. PilC is a phase-variable protein associated with pilus-mediated adherence of pathogenic Neisseria to target cells [].; PDB: 3HX6_A.
Probab=32.84 E-value=87 Score=25.29 Aligned_cols=72 Identities=22% Similarity=0.453 Sum_probs=32.2
Q ss_pred CCccceehhhhhcCCcceeeeeeecCCccEEEEccccC--------CcccEEEEEecC-CceeEEEEecccC--c-eeee
Q psy9278 7 LDKPQIICLVEKSLDYQLFDCKWMPCSAKFIVLGMKPK--------GTGSIQMYEIND-GQPELVKTVEKPN--A-FKCG 74 (98)
Q Consensus 7 ~~kPQIIehi~ksl~yT~fD~kWIP~SArfV~lG~~pr--------gtG~iqIyeL~~-~~l~~~~e~e~~~--~-~KC~ 74 (98)
..+|+|.. +. +-||+ |++|+=++ +++.|=|++++. |++ +++++-+. + +==-
T Consensus 148 ~s~P~I~~-~~--------~g~w~------~i~g~Gy~~~~~~~~~~~~~lyi~d~~t~G~l--~~~i~~~~~~~gl~~~ 210 (335)
T PF05567_consen 148 WSKPQIAK-VK--------NGKWV------VIFGSGYNSDDVDSSSGGAALYILDADTTGAL--IKKIDVPGGSGGLSSP 210 (335)
T ss_dssp -S--EEEE-ET--------TSSEE------EEEE--BS-TT-------EEEEEEETTT---E--EEEEEE--STT-EEEE
T ss_pred ccCCEEEE-cc--------CCcEE------EEEccCCCCCcccccCCCcEEEEEECCCCCce--EEEEecCCCCcccccc
Confidence 46777754 21 33674 67775433 467888999988 763 45554332 1 1000
Q ss_pred ecC--CCCCCCceEEEeecCceE
Q psy9278 75 TFN--ASPLSERYLATGDFEGKL 95 (98)
Q Consensus 75 TFg--aSsl~~r~lAtGdf~G~L 95 (98)
+.- .+.-...++=.||..|+|
T Consensus 211 ~~~D~d~DG~~D~vYaGDl~Gnl 233 (335)
T PF05567_consen 211 AVVDSDGDGYVDRVYAGDLGGNL 233 (335)
T ss_dssp EEE-TTSSSEE-EEEEEETTSEE
T ss_pred EEEeccCCCeEEEEEEEcCCCcE
Confidence 000 001113367789999987
No 184
>KOG0640|consensus
Probab=32.73 E-value=1.3e+02 Score=26.00 Aligned_cols=60 Identities=17% Similarity=0.417 Sum_probs=40.5
Q ss_pred CccEEEEccccCCcccEEEEEecCCce--eEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 33 SAKFIVLGMKPKGTGSIQMYEINDGQP--ELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 33 SArfV~lG~~prgtG~iqIyeL~~~~l--~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
|--|+.+|- ..-++++|+++.-.- ...-+-.+..+|-|.-+-.+ .+--+||+.||-+.||
T Consensus 227 sGefllvgT---dHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t---~~lYvTaSkDG~Iklw 288 (430)
T KOG0640|consen 227 SGEFLLVGT---DHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSST---GSLYVTASKDGAIKLW 288 (430)
T ss_pred CCceEEEec---CCCceeEEeccceeEeeecCcccccccceeEEEecCC---ccEEEEeccCCcEEee
Confidence 445666662 245789999876532 22223446677878766433 4678999999999999
No 185
>KOG0290|consensus
Probab=32.52 E-value=83 Score=26.67 Aligned_cols=75 Identities=20% Similarity=0.472 Sum_probs=49.2
Q ss_pred cCCcceeeeeeecCCccEEEEccccCC----cccEEEEEec--CCceeEEEEec-ccCceee---eecCCCCCCCceEEE
Q psy9278 19 SLDYQLFDCKWMPCSAKFIVLGMKPKG----TGSIQMYEIN--DGQPELVKTVE-KPNAFKC---GTFNASPLSERYLAT 88 (98)
Q Consensus 19 sl~yT~fD~kWIP~SArfV~lG~~prg----tG~iqIyeL~--~~~l~~~~e~e-~~~~~KC---~TFgaSsl~~r~lAt 88 (98)
.+.|-+--+-|||.+- |.+|+- .-.|++|+.+ ++++.+..... .+++=-| -+|-=+.+..+.|.|
T Consensus 94 d~~YP~tK~~wiPd~~-----g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igt 168 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSK-----GVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGT 168 (364)
T ss_pred CCCCCccceEecCCcc-----ccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEe
Confidence 4678888899999983 445543 4579999998 55555444322 1122222 245555667888999
Q ss_pred eecCceEEeC
Q psy9278 89 GDFEGKLQIW 98 (98)
Q Consensus 89 Gdf~G~L~iw 98 (98)
-+.|-.-.||
T Consensus 169 SSiDTTCTiW 178 (364)
T KOG0290|consen 169 SSIDTTCTIW 178 (364)
T ss_pred ecccCeEEEE
Confidence 8888888877
No 186
>KOG0306|consensus
Probab=32.49 E-value=82 Score=29.58 Aligned_cols=65 Identities=17% Similarity=0.261 Sum_probs=41.3
Q ss_pred eeeecCC---ccEEEEccccCCcccEEEEEecCCcee-EEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 27 CKWMPCS---AKFIVLGMKPKGTGSIQMYEINDGQPE-LVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 27 ~kWIP~S---ArfV~lG~~prgtG~iqIyeL~~~~l~-~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
+.|+|-+ -|.|++- +--.+.+|+|..|++. .+.+..+... .||=.++...-+||.|==||.++||
T Consensus 24 ~~~~~~~~~~Gr~va~~----a~E~vn~WdlRtge~~~~l~~~~~k~e---vt~l~~~~d~l~lAVGYaDGsVqif 92 (888)
T KOG0306|consen 24 INFVVKRSGKGRAVAVS----ALEQVNIWDLRTGEIEKKLILLKKKAE---VTCLRSSDDILLLAVGYADGSVQIF 92 (888)
T ss_pred eeEEEeecCCCcEEEEe----ccccEeEEeeecchhhhhhhhhcccce---EEEeeccCCcceEEEEecCceEEee
Confidence 3466655 3555442 3346889999999542 3333222222 3454666677799999999999998
No 187
>KOG4532|consensus
Probab=32.46 E-value=2.9e+02 Score=23.30 Aligned_cols=68 Identities=12% Similarity=0.100 Sum_probs=45.1
Q ss_pred eeeeeeecCCccEEEEccccCCcccEEEEEecCCceeE--EEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 24 LFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPEL--VKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 24 ~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~--~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
.+.+.-=|.-.=.++||-.|+ +=.|++++..-.+ +.+-....+==|-+|-.. +-.+|+|.-||.+.||
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~----Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~---~~~FAv~~Qdg~~~I~ 230 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRR----VFRYAIDDESEYIENIYEAPTSDHGFYNSFSEN---DLQFAVVFQDGTCAIY 230 (344)
T ss_pred eeeeEEcCCCceEEEecCCCc----ceEEEeCCccceeeeeEecccCCCceeeeeccC---cceEEEEecCCcEEEE
Confidence 555555555555678886654 7789998775444 445444444346666433 4579999999999998
No 188
>PF00568 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1, RanBP1-WASP) domain is found in multi-domain proteins implicated in a diverse range of signalling, nuclear transport and cytoskeletal events. This domain of around 115 amino acids is present in species ranging from yeast to mammals. Many EVH1-containing proteins associate with actin-based structures and play a role in cytoskeletal organisation. EVH1 domains recognise and bind the proline-rich motif FPPPP with low-affinity, further interactions then form between flanking residues [][]. WASP family proteins contain a EVH1 (WH1) in their N-terminals which bind proline-rich sequences in the WASP interacting protein. Proteins of the RanBP1 family contain a WH1 domain in their N-terminal region, which seems to bind a different sequence motif present in the C-terminal part of RanGTP protein [,]. Tertiary structure of the WH1 domain of the Mena protein revealed structure similarities with the pleckstrin homology (PH) domain. The overall fold consists of a compact parallel beta-sandwich, closed along one edge by a long alpha-helix. A highly conserved cluster of three surface-exposed aromatic side-chains forms the recognition site for the molecules target ligands. [].; GO: 0005515 protein binding; PDB: 1I2H_A 1DDV_A 1DDW_A 1EGX_A 3SYX_A 1TJ6_B 1XOD_B 1EVH_A 1I7A_B 2JP2_A ....
Probab=32.20 E-value=1.2e+02 Score=20.42 Aligned_cols=44 Identities=14% Similarity=0.340 Sum_probs=32.1
Q ss_pred eeec-CCccEEEEc-cccCCcccEEEEEecCCceeEEEEecccCce
Q psy9278 28 KWMP-CSAKFIVLG-MKPKGTGSIQMYEINDGQPELVKTVEKPNAF 71 (98)
Q Consensus 28 kWIP-~SArfV~lG-~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~ 71 (98)
.|+| ..+-.|++. ..++.+=.|.+|+|+++++..-.|+-..-.+
T Consensus 28 ~W~~~~~~g~v~~v~d~~~~~y~I~~~~~~~~~~v~e~~l~~~~~Y 73 (111)
T PF00568_consen 28 QWSPVKGTGVVCFVKDNSRRSYFIRLYDLQDGKVVWEQELYPGFVY 73 (111)
T ss_dssp SEEESSSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESTT-EE
T ss_pred cEeeCCeEEEEEEEEECCCCEEEEEEEEccccEEEEEeEecCCCEE
Confidence 5999 776666666 5556777899999998888887777554333
No 189
>KOG4283|consensus
Probab=31.14 E-value=91 Score=26.62 Aligned_cols=59 Identities=20% Similarity=0.450 Sum_probs=40.8
Q ss_pred CCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 32 CSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 32 ~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
+|.-||. .|.+ |.|-+|.+-.|+.--.-..+ -+-+-|+-|-..- ..+-+||.||++--|
T Consensus 304 ~s~vfv~---~p~~-~~lall~~~sgs~ir~l~~h-~k~i~c~~~~~~f---q~~~tg~~d~ni~~w 362 (397)
T KOG4283|consen 304 DSDVFVL---FPND-GSLALLNLLEGSFVRRLSTH-LKRINCAAYRPDF---EQCFTGDMNGNIYMW 362 (397)
T ss_pred ccceEEE---EecC-CeEEEEEccCceEEEeeecc-cceeeEEeecCch---hhhhccccCCccccc
Confidence 4444443 4666 99999998777654444454 6778899875542 357789999998766
No 190
>COG0179 MhpD 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=30.92 E-value=49 Score=26.37 Aligned_cols=45 Identities=22% Similarity=0.453 Sum_probs=34.7
Q ss_pred CCccceehhhhhcCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecc
Q psy9278 7 LDKPQIICLVEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEK 67 (98)
Q Consensus 7 ~~kPQIIehi~ksl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~ 67 (98)
.+=|+||+|+.+-.+-.+-|+ +.-| +|.|.| .|..|+ .+..|+|.
T Consensus 210 ~~i~~lI~~lS~~~tL~pGDv---------I~TG-TP~Gvg-----~l~~GD-~v~~~ieg 254 (266)
T COG0179 210 FSIPELIAYLSRFMTLEPGDV---------ILTG-TPSGVG-----FLKPGD-VVEVEIEG 254 (266)
T ss_pred cCHHHHHHHHhCCcccCCCCE---------EEeC-CCCCcc-----cCCCCC-EEEEEecc
Confidence 466899999999999998886 4455 999999 677777 45555554
No 191
>KOG2110|consensus
Probab=30.84 E-value=1.6e+02 Score=25.32 Aligned_cols=83 Identities=17% Similarity=0.348 Sum_probs=56.5
Q ss_pred CCCccceehhhhhcCCcceeeee----------eecCCccEEEEccc----------cCCcccEEEEEecCCceeEEEEe
Q psy9278 6 KLDKPQIICLVEKSLDYQLFDCK----------WMPCSAKFIVLGMK----------PKGTGSIQMYEINDGQPELVKTV 65 (98)
Q Consensus 6 ~~~kPQIIehi~ksl~yT~fD~k----------WIP~SArfV~lG~~----------prgtG~iqIyeL~~~~l~~~~e~ 65 (98)
+|++-.++.-++.+ --+||.| |=|.-....++--. ++-.|.+.||++. .|+-+..+
T Consensus 94 rmNr~RLvV~Lee~--IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~--nl~~v~~I 169 (391)
T KOG2110|consen 94 RMNRKRLVVCLEES--IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTI--NLQPVNTI 169 (391)
T ss_pred EEccceEEEEEccc--EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcc--cceeeeEE
Confidence 35666666666666 3355554 33444444444332 3458999999865 57777777
Q ss_pred c-ccCceeeeecCCCCCCCceEEEeecCceE
Q psy9278 66 E-KPNAFKCGTFNASPLSERYLATGDFEGKL 95 (98)
Q Consensus 66 e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L 95 (98)
+ ++.++-|-.|-++- ..|||++=+|.+
T Consensus 170 ~aH~~~lAalafs~~G---~llATASeKGTV 197 (391)
T KOG2110|consen 170 NAHKGPLAALAFSPDG---TLLATASEKGTV 197 (391)
T ss_pred EecCCceeEEEECCCC---CEEEEeccCceE
Confidence 7 99999999997664 589999988875
No 192
>KOG1063|consensus
Probab=30.22 E-value=89 Score=28.95 Aligned_cols=54 Identities=15% Similarity=0.231 Sum_probs=46.5
Q ss_pred CcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 45 GTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 45 gtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
.+=.|.||.-..++.+.+.|+| +..-|+-..|..-.-.+..||+|+-|-.++||
T Consensus 167 s~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW 221 (764)
T KOG1063|consen 167 SKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIW 221 (764)
T ss_pred cceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEE
Confidence 3557888888888999999999 88889988887766668899999999999998
No 193
>PRK04922 tolB translocation protein TolB; Provisional
Probab=30.05 E-value=1.6e+02 Score=23.78 Aligned_cols=39 Identities=10% Similarity=0.112 Sum_probs=28.1
Q ss_pred eeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEE
Q psy9278 25 FDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKT 64 (98)
Q Consensus 25 fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e 64 (98)
...+|-|...++++.. ...|...|-+|+++.++++.+..
T Consensus 251 ~~~~~SpDG~~l~~~~-s~~g~~~Iy~~d~~~g~~~~lt~ 289 (433)
T PRK04922 251 GAPSFSPDGRRLALTL-SRDGNPEIYVMDLGSRQLTRLTN 289 (433)
T ss_pred cCceECCCCCEEEEEE-eCCCCceEEEEECCCCCeEECcc
Confidence 4678999988776554 34566678888998888766543
No 194
>KOG1912|consensus
Probab=29.94 E-value=30 Score=32.69 Aligned_cols=16 Identities=44% Similarity=0.999 Sum_probs=14.0
Q ss_pred CceEEEeecCceEEeC
Q psy9278 83 ERYLATGDFEGKLQIW 98 (98)
Q Consensus 83 ~r~lAtGdf~G~L~iw 98 (98)
.-+|+.||-+|||.+|
T Consensus 638 ~d~lv~GD~~GNl~~W 653 (1062)
T KOG1912|consen 638 DDILVVGDVEGNLVVW 653 (1062)
T ss_pred CCeeEeecccCceeEE
Confidence 5589999999999988
No 195
>KOG0642|consensus
Probab=29.92 E-value=83 Score=28.26 Aligned_cols=51 Identities=14% Similarity=0.434 Sum_probs=38.2
Q ss_pred CcccEEEEEecCC------ceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 45 GTGSIQMYEINDG------QPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 45 gtG~iqIyeL~~~------~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
-.|.|.+|.|++. +++-+.+.. +.-++=|.-...+ ..|+-+|..||.++.|
T Consensus 314 ed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n---~~~~ysgg~Dg~I~~w 371 (577)
T KOG0642|consen 314 EDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSN---GEHCYSGGIDGTIRCW 371 (577)
T ss_pred cccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCC---ceEEEeeccCceeeee
Confidence 3789999999332 566666666 6677777765444 4799999999999988
No 196
>PF12293 DUF3625: Protein of unknown function (DUF3625); InterPro: IPR022073 This family of proteins is found in bacteria. Proteins in this family are typically between 327 and 360 amino acids in length.
Probab=29.80 E-value=73 Score=25.13 Aligned_cols=44 Identities=23% Similarity=0.463 Sum_probs=35.0
Q ss_pred cceehhhhhcCCcceeeeeeecCCccEEEEccccCCcccEEEEE
Q psy9278 10 PQIICLVEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYE 53 (98)
Q Consensus 10 PQIIehi~ksl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIye 53 (98)
|=-|+.+.-.-+-..|++.|+|.|.-+++.-..+-+.|-+-||=
T Consensus 67 PWPI~~~~~~g~~~~f~~~~~~~sn~l~i~~~~~~~~gnv~V~L 110 (241)
T PF12293_consen 67 PWPIASVPINGNPKSFQVQWMPGSNVLVITPLSPYAYGNVTVFL 110 (241)
T ss_pred ccceecccccCCCcceeeeecCCCcEEEEEeccccccccEEEEE
Confidence 33444444445567899999999999999999999999999873
No 197
>KOG0283|consensus
Probab=29.78 E-value=72 Score=29.28 Aligned_cols=37 Identities=22% Similarity=0.504 Sum_probs=29.5
Q ss_pred eeEEEEe--cccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 59 PELVKTV--EKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 59 l~~~~e~--e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
+...+|+ ++..+|=|..|-.. -++||+|.=||-|+||
T Consensus 256 l~~~Qe~~~ah~gaIw~mKFS~D---GKyLAsaGeD~virVW 294 (712)
T KOG0283|consen 256 LTVVQEISNAHKGAIWAMKFSHD---GKYLASAGEDGVIRVW 294 (712)
T ss_pred eEEeeccccccCCcEEEEEeCCC---CceeeecCCCceEEEE
Confidence 4444444 48889999999544 4899999999999999
No 198
>KOG4547|consensus
Probab=29.26 E-value=1.9e+02 Score=25.86 Aligned_cols=52 Identities=10% Similarity=0.024 Sum_probs=38.3
Q ss_pred CCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 44 KGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 44 rgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
++.|.+.+|.+.+|+++---+.. ++.++-|.+-++. .++|-+++=|++.-.|
T Consensus 77 t~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~---~~ciyS~~ad~~v~~~ 129 (541)
T KOG4547|consen 77 TPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQR---LGCIYSVGADLKVVYI 129 (541)
T ss_pred cCCccEEEEEecCCeEEEEEecCCCCCcceeeecccc---cCceEecCCceeEEEE
Confidence 56899999999999988666533 7777778765544 4677777777766554
No 199
>PF03761 DUF316: Domain of unknown function (DUF316) ; InterPro: IPR005514 This is a family of uncharacterised proteins from Caenorhabditis elegans.
Probab=28.98 E-value=88 Score=23.55 Aligned_cols=61 Identities=18% Similarity=0.269 Sum_probs=32.9
Q ss_pred cCCccEEEEccccCC---cccEEEEEe-cCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceE
Q psy9278 31 PCSAKFIVLGMKPKG---TGSIQMYEI-NDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKL 95 (98)
Q Consensus 31 P~SArfV~lG~~prg---tG~iqIyeL-~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L 95 (98)
+....+++|...+.- .-.+++|.+ +.+++.- . +-+..+|..-..+-..++..+.||+.|-|
T Consensus 173 ~~~~~~~Cl~~~~~~~~~~~~~~~yg~~~~~~~~~-~---~~~i~~~~~~~~~~~~~~~~~~~d~Gg~l 237 (282)
T PF03761_consen 173 SKNVSPPCLADSSTNWEKGDEVDVYGFNSTGKLKH-R---KLKITNCTKCAYSICTKQYSCKGDRGGPL 237 (282)
T ss_pred cccCCCEEeCCCccccccCceEEEeecCCCCeEEE-E---EEEEEEeeccceeEecccccCCCCccCeE
Confidence 455667777765443 446899999 4554431 1 12223332222222334567777877765
No 200
>KOG0275|consensus
Probab=28.62 E-value=48 Score=28.67 Aligned_cols=29 Identities=24% Similarity=0.826 Sum_probs=22.7
Q ss_pred ccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 67 KPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 67 ~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
++.-..|.-|-.- ..+|++|+-||-+.+|
T Consensus 212 ~KSh~EcA~FSPD---gqyLvsgSvDGFiEVW 240 (508)
T KOG0275|consen 212 QKSHVECARFSPD---GQYLVSGSVDGFIEVW 240 (508)
T ss_pred cccchhheeeCCC---CceEeeccccceeeee
Confidence 4555678888433 4699999999999999
No 201
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=28.57 E-value=1.1e+02 Score=22.20 Aligned_cols=21 Identities=19% Similarity=0.083 Sum_probs=11.1
Q ss_pred hhhhhcCCcceeeeeee-cCCc
Q psy9278 14 CLVEKSLDYQLFDCKWM-PCSA 34 (98)
Q Consensus 14 ehi~ksl~yT~fD~kWI-P~SA 34 (98)
-|.+.......-++.|| |.|+
T Consensus 113 GHTH~p~~~~~~g~~viNPGSv 134 (178)
T cd07394 113 GHTHKFEAFEHEGKFFINPGSA 134 (178)
T ss_pred CCCCcceEEEECCEEEEECCCC
Confidence 34554444444556565 6664
No 202
>COG2351 Transthyretin-like protein [General function prediction only]
Probab=28.23 E-value=95 Score=22.74 Aligned_cols=47 Identities=32% Similarity=0.399 Sum_probs=33.5
Q ss_pred ccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeec
Q psy9278 42 KPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDF 91 (98)
Q Consensus 42 ~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf 91 (98)
+|-..=.|.+|.++++.-+++++.....-=+|. +--+....+++|++
T Consensus 22 kPAagv~V~L~rl~~~~~~~l~t~~Tn~DGR~d---~pll~g~~~~~G~Y 68 (124)
T COG2351 22 KPAAGVKVELYRLEGNQWELLKTVVTNADGRID---APLLAGETLATGIY 68 (124)
T ss_pred CcCCCCEEEEEEecCCcceeeeEEEecCCCccc---ccccCccccccceE
Confidence 444445689999999999999999877777776 33444445555554
No 203
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=27.92 E-value=1.8e+02 Score=23.60 Aligned_cols=52 Identities=19% Similarity=0.359 Sum_probs=31.3
Q ss_pred cCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 43 PKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 43 prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
-|+.|.+.|.+ ....+++.+++.....-.+-. .+...|++.+.+.||.++++
T Consensus 12 ~~~~~~v~viD--~~t~~~~~~i~~~~~~h~~~~--~s~Dgr~~yv~~rdg~vsvi 63 (369)
T PF02239_consen 12 ERGSGSVAVID--GATNKVVARIPTGGAPHAGLK--FSPDGRYLYVANRDGTVSVI 63 (369)
T ss_dssp EGGGTEEEEEE--TTT-SEEEEEE-STTEEEEEE---TT-SSEEEEEETTSEEEEE
T ss_pred ecCCCEEEEEE--CCCCeEEEEEcCCCCceeEEE--ecCCCCEEEEEcCCCeEEEE
Confidence 35778888865 555677778876554422111 23335778888899999874
No 204
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=27.39 E-value=78 Score=26.42 Aligned_cols=25 Identities=24% Similarity=0.554 Sum_probs=21.2
Q ss_pred cEEEEccccCCcccEE-EEEecCCce
Q psy9278 35 KFIVLGMKPKGTGSIQ-MYEINDGQP 59 (98)
Q Consensus 35 rfV~lG~~prgtG~iq-IyeL~~~~l 59 (98)
|-.++|+..-|+|.+| ++.|+++..
T Consensus 314 ra~lVG~~TfGkg~vQ~~~~L~dg~~ 339 (406)
T COG0793 314 RATLVGETTFGKGTVQTLRPLSDGSA 339 (406)
T ss_pred CcEEEecccccceEEEeeEEcCCCCe
Confidence 5678999999999999 999966643
No 205
>KOG0301|consensus
Probab=26.88 E-value=2.3e+02 Score=26.33 Aligned_cols=54 Identities=19% Similarity=0.384 Sum_probs=39.5
Q ss_pred cEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 35 KFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 35 rfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
-|+.+| ..|.|..|.+++.-| .|.. +.+-+=|.+ ..+..+++++-.=||.|+||
T Consensus 192 ~flScs----NDg~Ir~w~~~ge~l---~~~~ghtn~vYsis---~~~~~~~Ivs~gEDrtlriW 246 (745)
T KOG0301|consen 192 HFLSCS----NDGSIRLWDLDGEVL---LEMHGHTNFVYSIS---MALSDGLIVSTGEDRTLRIW 246 (745)
T ss_pred CeEeec----CCceEEEEeccCcee---eeeeccceEEEEEE---ecCCCCeEEEecCCceEEEe
Confidence 567666 799999999955432 2322 555566665 45667899999999999999
No 206
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=26.88 E-value=1.4e+02 Score=27.06 Aligned_cols=35 Identities=23% Similarity=0.636 Sum_probs=28.9
Q ss_pred cCCcceeeeeeecCC---ccEEEEccccCCcccEEEEEecCC
Q psy9278 19 SLDYQLFDCKWMPCS---AKFIVLGMKPKGTGSIQMYEINDG 57 (98)
Q Consensus 19 sl~yT~fD~kWIP~S---ArfV~lG~~prgtG~iqIyeL~~~ 57 (98)
+-.-++--++|=|.| +-+|||= ..+.|++|++.+.
T Consensus 144 ~~~~~i~qv~WhP~s~~~~~l~vLt----sdn~lR~y~~~~~ 181 (717)
T PF10168_consen 144 NSSLEIKQVRWHPWSESDSHLVVLT----SDNTLRLYDISDP 181 (717)
T ss_pred CCCceEEEEEEcCCCCCCCeEEEEe----cCCEEEEEecCCC
Confidence 334577899999997 7899887 7899999999764
No 207
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=26.78 E-value=1.9e+02 Score=24.57 Aligned_cols=55 Identities=25% Similarity=0.485 Sum_probs=34.0
Q ss_pred eecCCccEEEEccccCCcc-cEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEee
Q psy9278 29 WMPCSAKFIVLGMKPKGTG-SIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGD 90 (98)
Q Consensus 29 WIP~SArfV~lG~~prgtG-~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGd 90 (98)
|+|.-.++.-++..|+++- .|-=|++..++-+.+.+.+. |.-|-.|. .-.|.+||
T Consensus 245 w~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p~-----~~H~~ss~--Dg~L~vGD 300 (386)
T PF14583_consen 245 WVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMPW-----CSHFMSSP--DGKLFVGD 300 (386)
T ss_dssp E-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE-S-----EEEEEE-T--TSSEEEEE
T ss_pred ccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeCCc-----eeeeEEcC--CCCEEEec
Confidence 9999999999988887633 56666666666666655542 88886665 55688888
No 208
>KOG2321|consensus
Probab=26.60 E-value=36 Score=30.99 Aligned_cols=39 Identities=28% Similarity=0.547 Sum_probs=29.1
Q ss_pred ceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 58 QPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 58 ~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
.++|++++|.|.+ |-+-..|.-+++-||||.+.=.+.+|
T Consensus 41 rieLiQdfe~p~a--st~ik~s~DGqY~lAtG~YKP~ikvy 79 (703)
T KOG2321|consen 41 RIELIQDFEMPTA--STRIKVSPDGQYLLATGTYKPQIKVY 79 (703)
T ss_pred HHHHHHhcCCccc--cceeEecCCCcEEEEecccCCceEEE
Confidence 4677888886643 44445578889999999999888765
No 209
>KOG1275|consensus
Probab=26.45 E-value=1.6e+02 Score=28.47 Aligned_cols=64 Identities=23% Similarity=0.511 Sum_probs=40.8
Q ss_pred eeecC-CccEEEEccccCCcccEEEEE---ecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 28 KWMPC-SAKFIVLGMKPKGTGSIQMYE---INDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 28 kWIP~-SArfV~lG~~prgtG~iqIye---L~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
|-+|. +.|.+|+- .+|..|+-+ |+..-+.+..-. |++=-|-+|--|+..+ -||.||-+|.+.+|
T Consensus 272 rf~Psl~t~~~V~S----~sGq~q~vd~~~lsNP~~~~~~v~--p~~s~i~~fDiSsn~~-alafgd~~g~v~~w 339 (1118)
T KOG1275|consen 272 RFHPSLTTRLAVTS----QSGQFQFVDTATLSNPPAGVKMVN--PNGSGISAFDISSNGD-ALAFGDHEGHVNLW 339 (1118)
T ss_pred hhcccccceEEEEe----cccceeeccccccCCCccceeEEc--cCCCcceeEEecCCCc-eEEEecccCcEeee
Confidence 44554 34455544 578888887 766644443333 3333367776555444 79999999999998
No 210
>KOG2106|consensus
Probab=26.44 E-value=1.8e+02 Score=26.38 Aligned_cols=56 Identities=21% Similarity=0.485 Sum_probs=43.6
Q ss_pred ecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEe
Q psy9278 30 MPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQI 97 (98)
Q Consensus 30 IP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~i 97 (98)
=|.+.-|++.| -.+.+.+|+ +.++.-.+.+| .+..|.-|-.|. ++|.|.-.|.+-+
T Consensus 377 hps~~q~~T~g----qdk~v~lW~--~~k~~wt~~~~--d~~~~~~fhpsg----~va~Gt~~G~w~V 432 (626)
T KOG2106|consen 377 HPSKNQLLTCG----QDKHVRLWN--DHKLEWTKIIE--DPAECADFHPSG----VVAVGTATGRWFV 432 (626)
T ss_pred CCChhheeecc----CcceEEEcc--CCceeEEEEec--CceeEeeccCcc----eEEEeeccceEEE
Confidence 47888888888 467899998 55565555554 457899998885 9999999998764
No 211
>PRK02889 tolB translocation protein TolB; Provisional
Probab=26.44 E-value=2.5e+02 Score=22.75 Aligned_cols=67 Identities=21% Similarity=0.222 Sum_probs=36.9
Q ss_pred eeeeeeecCCccEEEEccccCCcccEEEEEec--CCceeEEEEecccCceeeeecCCCCCCCceEE-EeecCceEEeC
Q psy9278 24 LFDCKWMPCSAKFIVLGMKPKGTGSIQMYEIN--DGQPELVKTVEKPNAFKCGTFNASPLSERYLA-TGDFEGKLQIW 98 (98)
Q Consensus 24 ~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~--~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lA-tGdf~G~L~iw 98 (98)
.....|-|...++++..+ ..|..+||.++ .++++.+... .......+|-+. .++|+ +.|-+|..+||
T Consensus 242 ~~~~~~SPDG~~la~~~~---~~g~~~Iy~~d~~~~~~~~lt~~--~~~~~~~~wSpD---G~~l~f~s~~~g~~~Iy 311 (427)
T PRK02889 242 NSAPAWSPDGRTLAVALS---RDGNSQIYTVNADGSGLRRLTQS--SGIDTEPFFSPD---GRSIYFTSDRGGAPQIY 311 (427)
T ss_pred ccceEECCCCCEEEEEEc---cCCCceEEEEECCCCCcEECCCC--CCCCcCeEEcCC---CCEEEEEecCCCCcEEE
Confidence 346789999998876543 24566777664 5555544321 111223345222 34555 55556666665
No 212
>KOG1538|consensus
Probab=26.04 E-value=1.9e+02 Score=27.39 Aligned_cols=73 Identities=23% Similarity=0.390 Sum_probs=47.5
Q ss_pred hcCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCC-------CC--------
Q psy9278 18 KSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASP-------LS-------- 82 (98)
Q Consensus 18 ksl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSs-------l~-------- 82 (98)
|...=|||.+.|-..--||..=| +.-.+-||. .+++=+-...+...|.|-+|-.-+ |.
T Consensus 50 KgHKDtVycVAys~dGkrFASG~----aDK~VI~W~---~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~ 122 (1081)
T KOG1538|consen 50 KGHKDTVYCVAYAKDGKRFASGS----ADKSVIIWT---SKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPE 122 (1081)
T ss_pred ccccceEEEEEEccCCceeccCC----CceeEEEec---ccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChh
Confidence 34456899999999998887332 222334454 233334445577888888885432 21
Q ss_pred ---------------------CceEEEeecCceEEe
Q psy9278 83 ---------------------ERYLATGDFEGKLQI 97 (98)
Q Consensus 83 ---------------------~r~lAtGdf~G~L~i 97 (98)
-.+||-|-++|.++|
T Consensus 123 qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsi 158 (1081)
T KOG1538|consen 123 QKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISI 158 (1081)
T ss_pred hhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEe
Confidence 348999999999886
No 213
>KOG1408|consensus
Probab=25.57 E-value=43 Score=31.58 Aligned_cols=51 Identities=12% Similarity=0.335 Sum_probs=38.6
Q ss_pred cccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEe
Q psy9278 46 TGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQI 97 (98)
Q Consensus 46 tG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~i 97 (98)
-|.|+||+|..-++.+.-|- +..-|-|-.|---.+...-||.++-|--+.|
T Consensus 480 ~GnlrVy~Lq~l~~~~~~eA-HesEilcLeyS~p~~~~kLLASasrdRlIHV 530 (1080)
T KOG1408|consen 480 GGNLRVYDLQELEYTCFMEA-HESEILCLEYSFPVLTNKLLASASRDRLIHV 530 (1080)
T ss_pred cCceEEEEehhhhhhhheec-ccceeEEEeecCchhhhHhhhhccCCceEEE
Confidence 59999999998776665554 7888999999766666667777776665554
No 214
>KOG0270|consensus
Probab=25.56 E-value=2.5e+02 Score=24.70 Aligned_cols=67 Identities=16% Similarity=0.367 Sum_probs=51.4
Q ss_pred eeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 26 DCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 26 D~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
-+.|=|.|--..++| -..|.+.=|.+.... +.+-.+. +..+|-|.++-++. ...|+|+.=++.+.+|
T Consensus 334 kv~w~~~se~~f~~~---tddG~v~~~D~R~~~-~~vwt~~AHd~~ISgl~~n~~~--p~~l~t~s~d~~Vklw 401 (463)
T KOG0270|consen 334 KVAWDPHSENSFFVS---TDDGTVYYFDIRNPG-KPVWTLKAHDDEISGLSVNIQT--PGLLSTASTDKVVKLW 401 (463)
T ss_pred EEEecCCCceeEEEe---cCCceEEeeecCCCC-CceeEEEeccCCcceEEecCCC--CcceeeccccceEEEE
Confidence 345888888877777 457888888886665 5555555 78899999985554 5679999999999998
No 215
>KOG1188|consensus
Probab=25.50 E-value=86 Score=26.76 Aligned_cols=48 Identities=21% Similarity=0.466 Sum_probs=31.4
Q ss_pred CcccEEEEEecCCceeEEEEec----ccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 45 GTGSIQMYEINDGQPELVKTVE----KPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 45 gtG~iqIyeL~~~~l~~~~e~e----~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
.+|.++||.... .+++.|+. ..++++ |- +...-..+-++.-||.+++|
T Consensus 48 Sngsv~lyd~~t--g~~l~~fk~~~~~~N~vr---f~-~~ds~h~v~s~ssDG~Vr~w 99 (376)
T KOG1188|consen 48 SNGSVRLYDKGT--GQLLEEFKGPPATTNGVR---FI-SCDSPHGVISCSSDGTVRLW 99 (376)
T ss_pred cCCeEEEEeccc--hhhhheecCCCCcccceE---Ee-cCCCCCeeEEeccCCeEEEE
Confidence 589999999766 44455554 233333 32 32244568888999999988
No 216
>PRK05137 tolB translocation protein TolB; Provisional
Probab=25.45 E-value=2.5e+02 Score=22.59 Aligned_cols=40 Identities=15% Similarity=0.258 Sum_probs=26.0
Q ss_pred eeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEE
Q psy9278 24 LFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKT 64 (98)
Q Consensus 24 ~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e 64 (98)
.+...|-|...++++..+ .+|...|-+++++.++++.+..
T Consensus 248 ~~~~~~SPDG~~la~~~~-~~g~~~Iy~~d~~~~~~~~Lt~ 287 (435)
T PRK05137 248 TFAPRFSPDGRKVVMSLS-QGGNTDIYTMDLRSGTTTRLTD 287 (435)
T ss_pred ccCcEECCCCCEEEEEEe-cCCCceEEEEECCCCceEEccC
Confidence 456789999888876643 3344445555677777765543
No 217
>KOG0299|consensus
Probab=25.41 E-value=47 Score=29.16 Aligned_cols=20 Identities=40% Similarity=0.748 Sum_probs=17.6
Q ss_pred CCCCCceEEEeecCceEEeC
Q psy9278 79 SPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 79 Ssl~~r~lAtGdf~G~L~iw 98 (98)
-|...++||||++|-.+.||
T Consensus 210 vS~Dgkylatgg~d~~v~Iw 229 (479)
T KOG0299|consen 210 VSSDGKYLATGGRDRHVQIW 229 (479)
T ss_pred EcCCCcEEEecCCCceEEEe
Confidence 35568999999999999998
No 218
>KOG4441|consensus
Probab=25.31 E-value=78 Score=27.45 Aligned_cols=57 Identities=18% Similarity=0.398 Sum_probs=43.7
Q ss_pred ccEEEEccccCCc---ccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCce
Q psy9278 34 AKFIVLGMKPKGT---GSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGK 94 (98)
Q Consensus 34 ArfV~lG~~prgt---G~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~ 94 (98)
-++.++|...... -.++.|+-..++-+.+...-++. .-||+..+..+-.|.|+|+|.
T Consensus 428 g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R----~~~g~a~~~~~iYvvGG~~~~ 487 (571)
T KOG4441|consen 428 GKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRR----SGFGVAVLNGKIYVVGGFDGT 487 (571)
T ss_pred CEEEEEcCcCCCccccceEEEEcCCCCceeecCCccccc----ccceEEEECCEEEEECCccCC
Confidence 4677788777777 67788888888777777665554 456788888999999999983
No 219
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=25.22 E-value=1.2e+02 Score=16.07 Aligned_cols=27 Identities=19% Similarity=0.338 Sum_probs=20.0
Q ss_pred eeeeeecCCccEEEEccccCCcccEEEE
Q psy9278 25 FDCKWMPCSAKFIVLGMKPKGTGSIQMY 52 (98)
Q Consensus 25 fD~kWIP~SArfV~lG~~prgtG~iqIy 52 (98)
+...|-|..-+++-....+. .|..+||
T Consensus 12 ~~p~~SpDGk~i~f~s~~~~-~g~~diy 38 (39)
T PF07676_consen 12 GSPAWSPDGKYIYFTSNRND-RGSFDIY 38 (39)
T ss_dssp EEEEE-TTSSEEEEEEECT---SSEEEE
T ss_pred cCEEEecCCCEEEEEecCCC-CCCcCEE
Confidence 45679999999999888776 7888887
No 220
>smart00045 DAGKa Diacylglycerol kinase accessory domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain might either be an accessory domain or else contribute to the catalytic domain. Bacterial homologues are known.
Probab=25.19 E-value=62 Score=22.79 Aligned_cols=33 Identities=27% Similarity=0.324 Sum_probs=27.7
Q ss_pred cCCccEEEEccccCCcccEEEE-------------EecCCceeEEE
Q psy9278 31 PCSAKFIVLGMKPKGTGSIQMY-------------EINDGQPELVK 63 (98)
Q Consensus 31 P~SArfV~lG~~prgtG~iqIy-------------eL~~~~l~~~~ 63 (98)
|+.++++++++.|.=-|-+.++ ++++|.|.++.
T Consensus 71 ~~~~~~v~v~N~~~~ggG~~i~p~~~~~~~~~p~a~~~DG~ldv~~ 116 (160)
T smart00045 71 PNSLEGIAVLNIPSYGGGTNLWGTTDKEDLNFSKQSHDDGLLEVVG 116 (160)
T ss_pred CCCccEEEEECCCccccCcccccCCcccccccCCCCCCCceEEEEE
Confidence 3468999999999888888999 77888888876
No 221
>KOG0641|consensus
Probab=25.06 E-value=4.1e+02 Score=22.16 Aligned_cols=60 Identities=20% Similarity=0.445 Sum_probs=40.0
Q ss_pred cCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEe
Q psy9278 31 PCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQI 97 (98)
Q Consensus 31 P~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~i 97 (98)
--|-|+++-|.- .-.--+|++.+|.. +.+-..+..-|+|.-|-.+ ..+|-|+++|-++.+
T Consensus 240 dpsgrll~sg~~---dssc~lydirg~r~-iq~f~phsadir~vrfsp~---a~yllt~syd~~ikl 299 (350)
T KOG0641|consen 240 DPSGRLLASGHA---DSSCMLYDIRGGRM-IQRFHPHSADIRCVRFSPG---AHYLLTCSYDMKIKL 299 (350)
T ss_pred CCCcceeeeccC---CCceEEEEeeCCce-eeeeCCCccceeEEEeCCC---ceEEEEecccceEEE
Confidence 345556655532 23456788887753 2333447778999999655 578999999988764
No 222
>KOG2315|consensus
Probab=24.67 E-value=52 Score=29.44 Aligned_cols=31 Identities=23% Similarity=0.723 Sum_probs=21.6
Q ss_pred eeeeeeecCCccEEEE-ccccCCcccEEEEEecCC
Q psy9278 24 LFDCKWMPCSAKFIVL-GMKPKGTGSIQMYEINDG 57 (98)
Q Consensus 24 ~fD~kWIP~SArfV~l-G~~prgtG~iqIyeL~~~ 57 (98)
|||++|-|.+.-|.|+ |=.|- .+.||+|+..
T Consensus 273 Vhdv~W~~s~~EF~VvyGfMPA---kvtifnlr~~ 304 (566)
T KOG2315|consen 273 VHDVTWSPSGREFAVVYGFMPA---KVTIFNLRGK 304 (566)
T ss_pred ceEEEECCCCCEEEEEEecccc---eEEEEcCCCC
Confidence 6999999999999776 44442 3456665543
No 223
>KOG0276|consensus
Probab=24.50 E-value=1.8e+02 Score=27.09 Aligned_cols=49 Identities=14% Similarity=0.327 Sum_probs=36.8
Q ss_pred ccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 47 GSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 47 G~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
=.|++|.- +++..+.+..| +.+=+-|.+|-+.. +-.+|++++|+.+.||
T Consensus 119 m~iKlW~w-e~~wa~~qtfeGH~HyVMqv~fnPkD--~ntFaS~sLDrTVKVW 168 (794)
T KOG0276|consen 119 MTIKLWDW-ENEWACEQTFEGHEHYVMQVAFNPKD--PNTFASASLDRTVKVW 168 (794)
T ss_pred cEEEEeec-cCceeeeeEEcCcceEEEEEEecCCC--ccceeeeeccccEEEE
Confidence 34566663 34566666666 77888889997766 5579999999999999
No 224
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=24.23 E-value=2.7e+02 Score=21.53 Aligned_cols=50 Identities=24% Similarity=0.368 Sum_probs=28.3
Q ss_pred CCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 44 KGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 44 rgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
...|.|..++...|++.--.+ +.... .+.+-.....+|.+|+.+|.|.++
T Consensus 286 ~~~G~l~~~d~~tG~~~W~~~-~~~~~----~~ssp~i~g~~l~~~~~~G~l~~~ 335 (377)
T TIGR03300 286 DADGVVVALDRRSGSELWKND-ELKYR----QLTAPAVVGGYLVVGDFEGYLHWL 335 (377)
T ss_pred CCCCeEEEEECCCCcEEEccc-cccCC----ccccCEEECCEEEEEeCCCEEEEE
Confidence 356888888887776432110 11111 111112345689999999998764
No 225
>PF08953 DUF1899: Domain of unknown function (DUF1899); InterPro: IPR015048 This set of proteins are found in various eukaryotic proteins. The function is unknown. ; PDB: 2B4E_A 2AQ5_A.
Probab=23.88 E-value=82 Score=20.15 Aligned_cols=37 Identities=19% Similarity=0.469 Sum_probs=22.0
Q ss_pred CCcceeeeeeecCCccEEEEccccCCcccEEEEEecC
Q psy9278 20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEIND 56 (98)
Q Consensus 20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~ 56 (98)
+.-...|.-.|-.+++|+++=-..-|-|++.|..|++
T Consensus 27 vs~~~~d~n~i~~N~kfiA~~~~~~GGG~~~Vlpl~~ 63 (65)
T PF08953_consen 27 VSTSSWDSNFIAANPKFIAVPWESGGGGAFAVLPLNK 63 (65)
T ss_dssp B-----SS-CEEE-SSEEEEEB--SSS--EEEEETT-
T ss_pred EeCccccCCeEEEcCCEEEEEeccCCccEEEEEeCCC
Confidence 4445678889999999999988778889999988865
No 226
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=23.84 E-value=1.6e+02 Score=17.65 Aligned_cols=28 Identities=29% Similarity=0.612 Sum_probs=17.7
Q ss_pred ceeeeecCCCCCCCceEEEeecCceEEe
Q psy9278 70 AFKCGTFNASPLSERYLATGDFEGKLQI 97 (98)
Q Consensus 70 ~~KC~TFgaSsl~~r~lAtGdf~G~L~i 97 (98)
+|+|+-|...+....-||.---.|.+.|
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi 29 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHI 29 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEE
Confidence 6888888765554456666555555544
No 227
>PF10877 DUF2671: Protein of unknown function (DUF2671); InterPro: IPR022715 This family of proteins with unknown function appears to be restricted to Rickettsia spp.
Probab=23.79 E-value=68 Score=21.94 Aligned_cols=24 Identities=29% Similarity=0.693 Sum_probs=16.3
Q ss_pred CcceeeeeeecCCccEEEEccccCC
Q psy9278 21 DYQLFDCKWMPCSAKFIVLGMKPKG 45 (98)
Q Consensus 21 ~yT~fD~kWIP~SArfV~lG~~prg 45 (98)
+--.||+|.| |-|.+++.-+--+|
T Consensus 21 ~spf~dvkyi-cqasllitdsirkg 44 (90)
T PF10877_consen 21 NSPFFDVKYI-CQASLLITDSIRKG 44 (90)
T ss_pred CCCcchhHhh-hhhheeeehhhhcc
Confidence 4456899998 55667766665555
No 228
>PF13970 DUF4221: Domain of unknown function (DUF4221); PDB: 3S9J_A.
Probab=23.70 E-value=2.2e+02 Score=22.20 Aligned_cols=47 Identities=23% Similarity=0.306 Sum_probs=30.0
Q ss_pred ecCCccEEEEccccCCcccEEEEEecCCceeEEEEecc--cCce-eeeecC
Q psy9278 30 MPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEK--PNAF-KCGTFN 77 (98)
Q Consensus 30 IP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~--~~~~-KC~TFg 77 (98)
.....+++.....++ +-.|++|+|+.++|...-..|+ |+++ +...|.
T Consensus 51 ~~~~~~yL~f~n~~~-~~~i~~~Dl~~~~l~~~i~~ekeGpngi~~~~~~~ 100 (333)
T PF13970_consen 51 SSDGKKYLYFLNNYK-SHSIDIYDLDSGKLVKKIPFEKEGPNGIGRPFGFF 100 (333)
T ss_dssp EETTEEEEEEEE-ST---EEEEEETTTTEEEEEEE-BSSSTTB-TT---EE
T ss_pred EcCCcEEEEEEcCCC-cceEEEEECCCCceeeeeeeeeECCCCccccccce
Confidence 567778888777666 7899999999998886665554 8887 333333
No 229
>KOG4547|consensus
Probab=23.56 E-value=1.4e+02 Score=26.69 Aligned_cols=52 Identities=15% Similarity=0.316 Sum_probs=38.3
Q ss_pred CcccEEEEEecCCceeEEEEec-ccCceeeeecCCCC---CCCceEEEeecCceEEeC
Q psy9278 45 GTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASP---LSERYLATGDFEGKLQIW 98 (98)
Q Consensus 45 gtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSs---l~~r~lAtGdf~G~L~iw 98 (98)
+.+.|.+|.++..|+ +.-++ ++.+++|-.|+.+- -..+-|++-+++--+.+|
T Consensus 162 as~~ik~~~~~~kev--v~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w 217 (541)
T KOG4547|consen 162 ASRQIKVLDIETKEV--VITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVW 217 (541)
T ss_pred ccceEEEEEccCceE--EEEecCCCcceEEEEEEEeccccccceeeeccccccceeEE
Confidence 467899999887764 44444 99999999999882 236777777777666665
No 230
>KOG2096|consensus
Probab=23.43 E-value=2.2e+02 Score=24.60 Aligned_cols=82 Identities=24% Similarity=0.384 Sum_probs=53.8
Q ss_pred ccceehhhhhcCCcceeeeeeecCCccEEEEccccCCcccEEEEEe---cCCceeEEE---Eec-ccCceeeeecCCCCC
Q psy9278 9 KPQIICLVEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEI---NDGQPELVK---TVE-KPNAFKCGTFNASPL 81 (98)
Q Consensus 9 kPQIIehi~ksl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL---~~~~l~~~~---e~e-~~~~~KC~TFgaSsl 81 (98)
|-|.+.||....- ..||++=-|+-.=+.+.|= |-.+.|||. .+|+++-++ ++. +..++--.-|-.+|
T Consensus 217 kGq~L~~idtnq~-~n~~aavSP~GRFia~~gF----TpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S- 290 (420)
T KOG2096|consen 217 KGQLLQSIDTNQS-SNYDAAVSPDGRFIAVSGF----TPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSS- 290 (420)
T ss_pred CCceeeeeccccc-cccceeeCCCCcEEEEecC----CCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCc-
Confidence 3577777765442 3478888888644444554 445788887 455444333 333 55566666665554
Q ss_pred CCceEEEeecCceEEeC
Q psy9278 82 SERYLATGDFEGKLQIW 98 (98)
Q Consensus 82 ~~r~lAtGdf~G~L~iw 98 (98)
+.++|-+=||+++||
T Consensus 291 --~r~vtvSkDG~wriw 305 (420)
T KOG2096|consen 291 --TRAVTVSKDGKWRIW 305 (420)
T ss_pred --ceeEEEecCCcEEEe
Confidence 789999999999999
No 231
>PRK04151 IMP cyclohydrolase; Provisional
Probab=23.40 E-value=2e+02 Score=22.45 Aligned_cols=48 Identities=15% Similarity=0.255 Sum_probs=32.4
Q ss_pred ccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCC
Q psy9278 34 AKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLS 82 (98)
Q Consensus 34 ArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~ 82 (98)
-||+++|..+.|+= ...|-+......--.-++...+++-.-|-.+.+.
T Consensus 4 GR~ivvG~s~dG~~-~~aY~V~sRSfpnR~~v~~~~~i~~~p~d~~~l~ 51 (197)
T PRK04151 4 GRFLVVGKTEEGKP-FAAYRVSSRSFPNRRAVVRDNTVAIVPKDDAEET 51 (197)
T ss_pred CCEEEEccCCCCCe-EEEEEEecCCCCCceeEEeCCeeEEeeCChhhcc
Confidence 38999999999987 4888877665553333334466766666555443
No 232
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=23.31 E-value=3e+02 Score=21.54 Aligned_cols=50 Identities=16% Similarity=0.266 Sum_probs=33.6
Q ss_pred cCCcceeeeeeecCCccEEEEccccCC--cccEEEEEecCCceeEEEEecccC
Q psy9278 19 SLDYQLFDCKWMPCSAKFIVLGMKPKG--TGSIQMYEINDGQPELVKTVEKPN 69 (98)
Q Consensus 19 sl~yT~fD~kWIP~SArfV~lG~~prg--tG~iqIyeL~~~~l~~~~e~e~~~ 69 (98)
.-++-+.++.|+|.+.+|++.= .-|. .-.|.+++...++.+++.+.+.+.
T Consensus 181 ~~~~yl~~v~W~~d~~~l~~~~-~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~ 232 (353)
T PF00930_consen 181 PQDYYLTRVGWSPDGKRLWVQW-LNRDQNRLDLVLCDASTGETRVVLEETSDG 232 (353)
T ss_dssp TSSEEEEEEEEEETTEEEEEEE-EETTSTEEEEEEEEECTTTCEEEEEEESSS
T ss_pred CCccCcccceecCCCcEEEEEE-cccCCCEEEEEEEECCCCceeEEEEecCCc
Confidence 3478889999999998555443 4455 455556666667787777655443
No 233
>KOG0278|consensus
Probab=23.30 E-value=43 Score=27.92 Aligned_cols=50 Identities=4% Similarity=0.256 Sum_probs=39.3
Q ss_pred cccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 46 TGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 46 tG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
.-.++||.||..+-..-.---++.+||-..|=.+ +..|..-..|+.+++|
T Consensus 121 ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~e---D~~iLSSadd~tVRLW 170 (334)
T KOG0278|consen 121 EKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHE---DKCILSSADDKTVRLW 170 (334)
T ss_pred HHHhhhhhccCCCCCchhhcCCCCcceeEEEecc---CceEEeeccCCceEEE
Confidence 3478999999998876555558999999999665 3566666889999988
No 234
>PF14894 Lsm_C: Lsm C-terminal; PDB: 1M5Q_1.
Probab=23.24 E-value=47 Score=21.74 Aligned_cols=28 Identities=14% Similarity=0.039 Sum_probs=19.2
Q ss_pred ehhhhhcCCcceeeeeeecCCccEEEEc
Q psy9278 13 ICLVEKSLDYQLFDCKWMPCSAKFIVLG 40 (98)
Q Consensus 13 Iehi~ksl~yT~fD~kWIP~SArfV~lG 40 (98)
-++++++|++-+.++|-+|.+--.++++
T Consensus 5 a~~~~r~l~l~p~~VK~~eea~vV~V~d 32 (64)
T PF14894_consen 5 AEYLERELNLFPGMVKVYEEANVVVVMD 32 (64)
T ss_dssp HHHHHH---HSTTTEEEETTTTEEEETT
T ss_pred HHHHHHhcccCccceEEeccCCEEEEee
Confidence 4688999999999999999865444433
No 235
>KOG1354|consensus
Probab=23.13 E-value=76 Score=27.44 Aligned_cols=26 Identities=27% Similarity=0.424 Sum_probs=19.4
Q ss_pred ceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 70 AFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 70 ~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
-|-|.+|-.+. .+|||||=+|++-++
T Consensus 27 iis~vef~~~G---e~LatGdkgGRVv~f 52 (433)
T KOG1354|consen 27 IISAVEFDHYG---ERLATGDKGGRVVLF 52 (433)
T ss_pred ceeeEEeeccc---ceEeecCCCCeEEEe
Confidence 45667775553 589999999998764
No 236
>KOG1240|consensus
Probab=22.97 E-value=2.9e+02 Score=27.58 Aligned_cols=78 Identities=10% Similarity=0.164 Sum_probs=47.5
Q ss_pred eehhhhh-cCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCcee-EE--EEec---ccCceeeeecCCCCCCCc
Q psy9278 12 IICLVEK-SLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPE-LV--KTVE---KPNAFKCGTFNASPLSER 84 (98)
Q Consensus 12 IIehi~k-sl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~-~~--~e~e---~~~~~KC~TFgaSsl~~r 84 (98)
++.|+++ +.+-+ +..=.|....|.+-|+ ..|+++||++.+-+-. -+ +|.. ....++|.|+=.++ .
T Consensus 1040 lVAhL~Ehs~~v~--k~a~s~~~~s~FvsgS---~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~---~ 1111 (1431)
T KOG1240|consen 1040 LVAHLHEHSSAVI--KLAVSSEHTSLFVSGS---DDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNG---D 1111 (1431)
T ss_pred Eeehhhhcccccc--ceeecCCCCceEEEec---CCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCC---C
Confidence 5566543 33322 5555566644444442 6899999998764332 11 1111 34678888884443 4
Q ss_pred eEEEeecCceEEe
Q psy9278 85 YLATGDFEGKLQI 97 (98)
Q Consensus 85 ~lAtGdf~G~L~i 97 (98)
.+|+|.=||.+.+
T Consensus 1112 ~~Av~t~DG~v~~ 1124 (1431)
T KOG1240|consen 1112 QFAVSTKDGSVRV 1124 (1431)
T ss_pred eEEEEcCCCeEEE
Confidence 7999999999875
No 237
>KOG3914|consensus
Probab=22.89 E-value=1.6e+02 Score=25.29 Aligned_cols=61 Identities=18% Similarity=0.266 Sum_probs=37.4
Q ss_pred ceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCC-------CCCCCceEEEeecCceE
Q psy9278 23 QLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNA-------SPLSERYLATGDFEGKL 95 (98)
Q Consensus 23 T~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFga-------Ssl~~r~lAtGdf~G~L 95 (98)
-++|+.|.|.. +|++.- ++++---+.+..-++.|+-==+|. +-..+++|+.|+=|++|
T Consensus 153 ml~dVavS~D~-~~Iita--------------DRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tl 217 (390)
T KOG3914|consen 153 MLLDVAVSPDD-QFIITA--------------DRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTL 217 (390)
T ss_pred hhheeeecCCC-CEEEEe--------------cCCceEEEEecCcccchhhhccccHhheeeeeeccCceeeecCCCCcE
Confidence 36899999999 666543 333333333333333333222233 23458899999999999
Q ss_pred EeC
Q psy9278 96 QIW 98 (98)
Q Consensus 96 ~iw 98 (98)
.+|
T Consensus 218 r~W 220 (390)
T KOG3914|consen 218 RLW 220 (390)
T ss_pred EEE
Confidence 999
No 238
>KOG0639|consensus
Probab=22.75 E-value=1.1e+02 Score=27.81 Aligned_cols=71 Identities=18% Similarity=0.449 Sum_probs=49.4
Q ss_pred cceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 22 YQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 22 yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
.-+-.||-.|.+..++|=|+ --.+.||+|-.....+-.|. ...+--|-.-.+|.-.+-.||+- =||++.||
T Consensus 466 nyiRSckL~pdgrtLivGGe----astlsiWDLAapTprikael-tssapaCyALa~spDakvcFscc-sdGnI~vw 536 (705)
T KOG0639|consen 466 NYIRSCKLLPDGRTLIVGGE----ASTLSIWDLAAPTPRIKAEL-TSSAPACYALAISPDAKVCFSCC-SDGNIAVW 536 (705)
T ss_pred cceeeeEecCCCceEEeccc----cceeeeeeccCCCcchhhhc-CCcchhhhhhhcCCccceeeeec-cCCcEEEE
Confidence 33567999999988887776 45799999998877766665 44456677666665444344332 27888887
No 239
>cd05400 NT_2-5OAS_ClassI-CCAase Nucleotidyltransferase (NT) domain of 2'5'-oligoadenylate (2-5A)synthetase (2-5OAS) and class I CCA-adding enzyme. In vertebrates, 2-5OASs are induced by interferon during the innate immune response to protect against RNA virus infections. In the presence of an RNA activator, 2-5OASs catalyze the oligomerization of ATP into 2-5A. 2-5A activates endoribonuclease L, which leads to degradation of the viral RNA. 2-5OASs are also implicated in cell growth control, differentiation, and apoptosis. This family includes human OAS1, -2, -3, and OASL. CCA-adding enzymes add the sequence [cytidine(C)-cytidine-adenosine (A)], one nucleotide at a time, onto the 3' end of tRNA, in a template-independent reaction. This class I group includes the archaeal Sulfolobus shibatae and Archeoglobus fulgidus CCA-adding enzymes. It belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more dis
Probab=22.59 E-value=55 Score=22.15 Aligned_cols=31 Identities=23% Similarity=0.179 Sum_probs=21.1
Q ss_pred eehhhhhcCCcceeeeeeecCCccEEEEccccCCccc
Q psy9278 12 IICLVEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGS 48 (98)
Q Consensus 12 IIehi~ksl~yT~fD~kWIP~SArfV~lG~~prgtG~ 48 (98)
|.+++++...... ...+++.+.||.+|||..
T Consensus 12 i~~~L~~~~~~~~------~~~~~~~~~GS~a~~T~i 42 (143)
T cd05400 12 IREALKESLSELA------GRVAEVFLQGSYARGTAL 42 (143)
T ss_pred HHHHHHHhccccc------ccccEEEEEcceeCCCCC
Confidence 4555555554322 256789999999999874
No 240
>KOG1534|consensus
Probab=22.24 E-value=15 Score=29.95 Aligned_cols=27 Identities=30% Similarity=0.652 Sum_probs=20.8
Q ss_pred cceehhhhhcCCcce-----eeeeeecCCccEE
Q psy9278 10 PQIICLVEKSLDYQL-----FDCKWMPCSAKFI 37 (98)
Q Consensus 10 PQIIehi~ksl~yT~-----fD~kWIP~SArfV 37 (98)
|||++|++. +||.+ -|...+=.+.||+
T Consensus 119 ~~iv~hl~~-~~F~~c~Vylldsqf~vD~~Kfi 150 (273)
T KOG1534|consen 119 PQIVEHLKQ-WNFNVCVVYLLDSQFLVDSTKFI 150 (273)
T ss_pred HHHHHHHhc-ccCceeEEEEeccchhhhHHHHH
Confidence 899999998 88876 4556666666665
No 241
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=21.91 E-value=1.3e+02 Score=26.89 Aligned_cols=34 Identities=24% Similarity=0.632 Sum_probs=23.4
Q ss_pred CcceeeeeeecCCccEEEEc-cccCCcccEEEEEecCC
Q psy9278 21 DYQLFDCKWMPCSAKFIVLG-MKPKGTGSIQMYEINDG 57 (98)
Q Consensus 21 ~yT~fD~kWIP~SArfV~lG-~~prgtG~iqIyeL~~~ 57 (98)
.=-|||.-|=|.|.||+++- -.|- ++.+|.|.++
T Consensus 274 ~~pVhdf~W~p~S~~F~vi~g~~pa---~~s~~~lr~N 308 (561)
T COG5354 274 KDPVHDFTWEPLSSRFAVISGYMPA---SVSVFDLRGN 308 (561)
T ss_pred cccceeeeecccCCceeEEeccccc---ceeecccccc
Confidence 34579999999999999986 4443 3445554443
No 242
>TIGR02697 WPE_wolbac Wolbachia palindromic element (WPE) domain. This domain conceptually resembles TIGR01045, the Rickettsial palindromic element (RPE) domain. In both cases, a protein-coding palindromic element spreads through a genome, inserting usually in protein-coding regions. The additional protein coding sequence is thought to allow function of the host protein because of location in surface-exposed regions of the protein structure. Note that this model appears to work better in fragment mode.
Probab=21.85 E-value=31 Score=20.33 Aligned_cols=12 Identities=42% Similarity=1.063 Sum_probs=8.8
Q ss_pred eeeeeeecCCcc
Q psy9278 24 LFDCKWMPCSAK 35 (98)
Q Consensus 24 ~fD~kWIP~SAr 35 (98)
+|.--|||-||-
T Consensus 22 l~nk~WIPVSat 33 (36)
T TIGR02697 22 LYNKNWIPVSAT 33 (36)
T ss_pred HhccCceeeeee
Confidence 344679999984
No 243
>PF01474 DAHP_synth_2: Class-II DAHP synthetase family; InterPro: IPR002480 Members of the 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthetase family (2.5.1.54 from EC) catalyse the first step in aromatic amino acid biosynthesis from chorismate. Class I (see IPR006218 from INTERPRO) includes bacterial and yeast enzymes; class II includes higher plants and various microorganisms []. The first step in the common pathway leading to the biosynthesis of aromatic compounds is the stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP). This reaction is catalyzed by DAHP synthase, a metal-activated enzyme, which in microorganisms is the target for negative-feedback regulation by pathway intermediates or by end products.; GO: 0003849 3-deoxy-7-phosphoheptulonate synthase activity, 0009073 aromatic amino acid family biosynthetic process; PDB: 3NUD_A 3KGF_A 2W19_A 3NUE_B 3PFP_A 2B7O_B 3RZI_A 3NV8_B 2W1A_A.
Probab=21.24 E-value=19 Score=31.08 Aligned_cols=42 Identities=21% Similarity=0.526 Sum_probs=30.3
Q ss_pred eeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeee
Q psy9278 25 FDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCG 74 (98)
Q Consensus 25 fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~ 74 (98)
.+-+|.-+||-|+-+|++.|. +++--++..+.++.|-++|+|
T Consensus 249 ~~g~~y~~SaH~~WIGeRTRq--------~dgAHve~~~gi~NPigvKvG 290 (439)
T PF01474_consen 249 DTGRWYNTSAHFLWIGERTRQ--------LDGAHVEFLRGIANPIGVKVG 290 (439)
T ss_dssp SSEEEEETT-SEEEE-TTT----------TTSHHHHHHHHB-S-EEEEE-
T ss_pred CCCCccccccceeeecccccC--------CchhHHHHHhhccCccceeeC
Confidence 345799999999999999984 667778888999999999998
No 244
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=20.94 E-value=2.8e+02 Score=20.04 Aligned_cols=41 Identities=22% Similarity=0.417 Sum_probs=23.8
Q ss_pred CcccEEEEEecCCceeEEEEeccc-CceeeeecCCCCCCCceEEE
Q psy9278 45 GTGSIQMYEINDGQPELVKTVEKP-NAFKCGTFNASPLSERYLAT 88 (98)
Q Consensus 45 gtG~iqIyeL~~~~l~~~~e~e~~-~~~KC~TFgaSsl~~r~lAt 88 (98)
+.|.|.+|.-+ |++ +.+++-| ...=|++||.....+=.+.|
T Consensus 203 ~~~~I~~~~p~-G~~--~~~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 203 GGGRIVVFDPD-GKL--LREIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp TTTEEEEEETT-SCE--EEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred CCCEEEEECCC-ccE--EEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 35677777755 553 4555555 56678889765544434433
No 245
>PF04714 BCL_N: BCL7, N-terminal conserver region; InterPro: IPR006804 The members of this group of sequences contain a conserved N-terminal domain which is found in the BCL7 family. The function of BCL7 proteins is unknown, though they may be involved in early development. Notably, BCL7B is commonly hemizygously deleted in patients with Williams syndrome [].
Probab=20.86 E-value=49 Score=20.95 Aligned_cols=13 Identities=31% Similarity=0.616 Sum_probs=9.1
Q ss_pred cceeeeeeecCCc
Q psy9278 22 YQLFDCKWMPCSA 34 (98)
Q Consensus 22 yT~fD~kWIP~SA 34 (98)
-++--.||||-+|
T Consensus 40 tslriyKWVPvt~ 52 (52)
T PF04714_consen 40 TSLRIYKWVPVTS 52 (52)
T ss_pred ceEEEEEEEeccC
Confidence 3455569999775
No 246
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=20.83 E-value=2.2e+02 Score=22.51 Aligned_cols=42 Identities=14% Similarity=0.173 Sum_probs=31.9
Q ss_pred CcceeeeeeecCC----ccEEEEccccCCcccEEEEEecCCceeEEE
Q psy9278 21 DYQLFDCKWMPCS----AKFIVLGMKPKGTGSIQMYEINDGQPELVK 63 (98)
Q Consensus 21 ~yT~fD~kWIP~S----ArfV~lG~~prgtG~iqIyeL~~~~l~~~~ 63 (98)
|---|.+|.+..+ -|+|++.+..+ ||.+=+.+|+.-+.+.++
T Consensus 211 nq~~f~t~~~~~~~~~~v~lv~vP~Fs~-t~~~vlvdl~tLe~~~v~ 256 (257)
T cd07387 211 NQPKFGTKLVEGEEGQRVLLVCVPSFSK-TGTAVLVNLRTLECEPIS 256 (257)
T ss_pred CCcceeeeEEEcCCCCeEEEEEeCCcCc-CCEEEEEECCcCcEEEEe
Confidence 3344778888775 78999998855 999999998877776653
No 247
>TIGR01333 cyt_b559_beta cytochrome b559, beta subunit. This model describes the beta subunit of cytochrome b559, about 40 residues in length. It is homologous to the N-terminal half of the alpha subunit, a protein of about 83 residues. Cytochrome b559 is associated with photosystem II.
Probab=20.35 E-value=41 Score=20.48 Aligned_cols=16 Identities=25% Similarity=0.810 Sum_probs=13.0
Q ss_pred hhhcCCcceeeeeeec
Q psy9278 16 VEKSLDYQLFDCKWMP 31 (98)
Q Consensus 16 i~ksl~yT~fD~kWIP 31 (98)
-++.+.|-+|-+||.-
T Consensus 5 ~~~~~~yPIfTvRWla 20 (43)
T TIGR01333 5 PLKPISYPIFTFRWLA 20 (43)
T ss_pred CCCcccccceeeehhh
Confidence 3567899999999963
No 248
>PRK00178 tolB translocation protein TolB; Provisional
Probab=20.31 E-value=3.3e+02 Score=21.59 Aligned_cols=39 Identities=18% Similarity=0.242 Sum_probs=27.0
Q ss_pred eeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEE
Q psy9278 25 FDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKT 64 (98)
Q Consensus 25 fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e 64 (98)
....|-|...++++.. ...|...|-+|+++.++++.+..
T Consensus 246 ~~~~~SpDG~~la~~~-~~~g~~~Iy~~d~~~~~~~~lt~ 284 (430)
T PRK00178 246 GAPAWSPDGSKLAFVL-SKDGNPEIYVMDLASRQLSRVTN 284 (430)
T ss_pred CCeEECCCCCEEEEEE-ccCCCceEEEEECCCCCeEEccc
Confidence 4578999988777654 34455567777888888766553
No 249
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=20.28 E-value=1.5e+02 Score=18.53 Aligned_cols=21 Identities=24% Similarity=0.602 Sum_probs=13.8
Q ss_pred cEEEEEecCCceeEEEEeccc
Q psy9278 48 SIQMYEINDGQPELVKTVEKP 68 (98)
Q Consensus 48 ~iqIyeL~~~~l~~~~e~e~~ 68 (98)
.+.||+.++++++.+...+.+
T Consensus 23 ~f~i~d~~~~~~~~~~~~~n~ 43 (103)
T cd00851 23 YFLIYDVETGKIKNVEVIENP 43 (103)
T ss_pred EEEEEEccCCcEeEEEEecCC
Confidence 466777777776666666544
No 250
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=20.27 E-value=3.5e+02 Score=22.49 Aligned_cols=61 Identities=15% Similarity=0.292 Sum_probs=41.1
Q ss_pred cEEEEccccCCcccEEEEEecCCceeEEEEecc-------cCceeeeecCCCCCCC-----ceEEEeecCceEEeC
Q psy9278 35 KFIVLGMKPKGTGSIQMYEINDGQPELVKTVEK-------PNAFKCGTFNASPLSE-----RYLATGDFEGKLQIW 98 (98)
Q Consensus 35 rfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~-------~~~~KC~TFgaSsl~~-----r~lAtGdf~G~L~iw 98 (98)
-||++|. ..|.|-|.+|.+..+-.-..+.. ...+.|.-|+-..+.+ -.|.+|.=.|++.+|
T Consensus 98 GFvaigy---~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~f 170 (395)
T PF08596_consen 98 GFVAIGY---ESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTF 170 (395)
T ss_dssp SEEEEEE---TTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEE
T ss_pred cEEEEEe---cCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEE
Confidence 5899985 57899999998777666644433 3345677775444333 478899999988764
No 251
>KOG0650|consensus
Probab=20.24 E-value=96 Score=28.51 Aligned_cols=65 Identities=14% Similarity=0.181 Sum_probs=45.8
Q ss_pred ceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEE
Q psy9278 23 QLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQ 96 (98)
Q Consensus 23 T~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~ 96 (98)
+|-.++.=|.++.|+|.-+ -.+.||.|.+.+|.+ +. ..+.|=.+|-|-...--+|..|++|++|-
T Consensus 568 ~vq~v~FHPs~p~lfVaTq-----~~vRiYdL~kqelvK--kL--~tg~kwiS~msihp~GDnli~gs~d~k~~ 632 (733)
T KOG0650|consen 568 LVQRVKFHPSKPYLFVATQ-----RSVRIYDLSKQELVK--KL--LTGSKWISSMSIHPNGDNLILGSYDKKMC 632 (733)
T ss_pred ceeEEEecCCCceEEEEec-----cceEEEehhHHHHHH--HH--hcCCeeeeeeeecCCCCeEEEecCCCeeE
Confidence 4558899999999998764 479999999976532 22 12334444444444456999999999885
Done!