Query psy9278
Match_columns 98
No_of_seqs 85 out of 87
Neff 4.0
Searched_HMMs 29240
Date Fri Aug 16 23:23:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9278.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9278hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3i2n_A WD repeat-containing pr 99.5 6.4E-14 2.2E-18 98.7 9.6 93 6-98 3-95 (357)
2 3f3f_A Nucleoporin SEH1; struc 98.1 1.7E-05 5.8E-10 54.2 8.8 80 14-98 4-86 (351)
3 1k8k_C P40, ARP2/3 complex 41 98.1 2E-05 6.8E-10 55.7 9.1 71 21-98 8-79 (372)
4 3dwl_C Actin-related protein 2 98.1 4.8E-06 1.7E-10 59.7 5.7 81 7-98 1-82 (377)
5 4gqb_B Methylosome protein 50; 98.1 1.8E-05 6.2E-10 59.1 8.9 70 21-98 82-154 (344)
6 4g56_B MGC81050 protein; prote 98.0 1.8E-05 6.3E-10 58.6 8.1 72 20-98 268-339 (357)
7 3fm0_A Protein CIAO1; WDR39,SG 98.0 4.5E-05 1.5E-09 55.7 9.6 73 19-98 59-132 (345)
8 3jrp_A Fusion protein of prote 98.0 3.8E-05 1.3E-09 54.0 8.8 75 19-98 9-84 (379)
9 3bg1_A Protein SEC13 homolog; 98.0 3E-05 1E-09 56.0 8.3 81 13-98 5-86 (316)
10 4ggc_A P55CDC, cell division c 98.0 3.1E-05 1.1E-09 53.5 8.0 69 21-98 25-94 (318)
11 2pm9_A Protein WEB1, protein t 98.0 9.4E-06 3.2E-10 58.4 5.4 73 23-98 14-94 (416)
12 3ow8_A WD repeat-containing pr 98.0 5.4E-05 1.8E-09 55.2 9.2 86 7-98 18-107 (321)
13 1yfq_A Cell cycle arrest prote 98.0 5E-05 1.7E-09 53.2 8.7 73 19-98 9-84 (342)
14 2pm7_B Protein transport prote 98.0 7.5E-05 2.6E-09 53.3 9.7 76 20-98 144-234 (297)
15 3mmy_A MRNA export factor; mRN 97.9 8.2E-05 2.8E-09 51.9 9.3 76 17-98 35-113 (368)
16 3mmy_A MRNA export factor; mRN 97.9 7.1E-05 2.4E-09 52.2 8.6 74 18-98 83-156 (368)
17 2pm7_B Protein transport prote 97.9 4.4E-05 1.5E-09 54.5 7.6 73 21-98 9-82 (297)
18 3lrv_A PRE-mRNA-splicing facto 97.9 4.8E-05 1.6E-09 55.0 7.8 70 22-98 126-197 (343)
19 3ei3_B DNA damage-binding prot 97.9 5.7E-05 1.9E-09 54.6 7.8 74 20-98 72-146 (383)
20 3k26_A Polycomb protein EED; W 97.9 8.6E-05 2.9E-09 51.9 8.3 73 20-98 114-188 (366)
21 4e54_B DNA damage-binding prot 97.8 4.5E-05 1.6E-09 57.2 7.2 73 21-98 119-192 (435)
22 3gre_A Serine/threonine-protei 97.8 3.9E-05 1.3E-09 56.4 6.7 82 11-98 53-138 (437)
23 4g56_B MGC81050 protein; prote 97.8 3E-05 1E-09 57.4 5.9 69 22-98 95-166 (357)
24 2ynn_A Coatomer subunit beta'; 97.8 0.00013 4.3E-09 52.2 8.8 72 21-98 97-168 (304)
25 1yfq_A Cell cycle arrest prote 97.8 6.9E-05 2.4E-09 52.5 7.1 72 19-98 54-127 (342)
26 3k26_A Polycomb protein EED; W 97.8 0.0001 3.5E-09 51.6 7.9 79 16-98 13-100 (366)
27 1k8k_C P40, ARP2/3 complex 41 97.8 0.00018 6.1E-09 50.8 9.3 72 20-98 51-123 (372)
28 4a11_B DNA excision repair pro 97.8 0.00022 7.5E-09 50.6 9.5 74 20-98 98-171 (408)
29 1sq9_A Antiviral protein SKI8; 97.8 3.9E-05 1.3E-09 55.0 5.6 78 15-98 10-96 (397)
30 3dwl_C Actin-related protein 2 97.8 8.2E-05 2.8E-09 53.3 7.1 72 20-98 54-127 (377)
31 4gqb_B Methylosome protein 50; 97.8 0.00011 3.7E-09 54.9 8.0 71 21-98 257-327 (344)
32 3i2n_A WD repeat-containing pr 97.8 0.00016 5.5E-09 50.5 8.4 74 19-98 257-349 (357)
33 4ggc_A P55CDC, cell division c 97.7 0.00025 8.7E-09 48.9 9.1 72 20-98 239-311 (318)
34 3f3f_A Nucleoporin SEH1; struc 97.7 0.0003 1E-08 48.0 9.2 76 19-98 55-139 (351)
35 4ery_A WD repeat-containing pr 97.7 0.00025 8.6E-09 49.9 9.1 70 20-98 64-134 (312)
36 3fm0_A Protein CIAO1; WDR39,SG 97.7 0.00025 8.7E-09 51.7 9.4 72 20-98 149-221 (345)
37 1gxr_A ESG1, transducin-like e 97.7 0.00032 1.1E-08 48.4 9.4 72 20-98 96-168 (337)
38 3jrp_A Fusion protein of prote 97.7 0.00012 4E-09 51.5 7.2 72 20-98 205-283 (379)
39 2hes_X YDR267CP; beta-propelle 97.7 0.00023 7.8E-09 51.6 9.0 69 21-98 14-85 (330)
40 2aq5_A Coronin-1A; WD40 repeat 97.7 0.00011 3.7E-09 54.0 7.3 73 21-98 81-159 (402)
41 2hes_X YDR267CP; beta-propelle 97.7 0.00025 8.6E-09 51.4 9.0 71 21-98 107-180 (330)
42 2pm9_A Protein WEB1, protein t 97.7 8E-05 2.7E-09 53.5 6.2 75 21-98 214-290 (416)
43 4h5i_A Guanine nucleotide-exch 97.7 0.00031 1.1E-08 52.2 9.6 85 11-98 209-296 (365)
44 3frx_A Guanine nucleotide-bind 97.7 0.00021 7.1E-09 51.6 8.1 75 18-98 14-92 (319)
45 4ery_A WD repeat-containing pr 97.7 0.00026 9E-09 49.8 8.4 73 18-98 20-92 (312)
46 4aow_A Guanine nucleotide-bind 97.7 0.00041 1.4E-08 48.3 9.2 75 18-98 35-113 (340)
47 1gxr_A ESG1, transducin-like e 97.7 0.00034 1.2E-08 48.3 8.8 70 20-98 264-333 (337)
48 2aq5_A Coronin-1A; WD40 repeat 97.7 0.0002 7E-09 52.5 8.0 72 21-98 131-203 (402)
49 4aez_A CDC20, WD repeat-contai 97.7 0.00022 7.6E-09 52.6 8.2 69 20-98 133-201 (401)
50 2ynn_A Coatomer subunit beta'; 97.6 0.00036 1.2E-08 49.8 9.0 69 21-98 55-124 (304)
51 3ei3_B DNA damage-binding prot 97.6 0.00026 9E-09 51.1 8.2 73 21-98 204-278 (383)
52 4h5i_A Guanine nucleotide-exch 97.6 0.00026 8.8E-09 52.7 8.0 68 22-98 270-339 (365)
53 2xyi_A Probable histone-bindin 97.6 8.4E-05 2.9E-09 55.8 5.4 84 10-98 117-209 (430)
54 3bg1_A Protein SEC13 homolog; 97.6 0.00028 9.7E-09 50.8 8.0 76 19-98 55-132 (316)
55 3frx_A Guanine nucleotide-bind 97.6 0.0004 1.4E-08 50.1 8.7 70 20-98 64-134 (319)
56 4a11_B DNA excision repair pro 97.6 0.00024 8.2E-09 50.4 7.3 74 20-98 42-127 (408)
57 2pbi_B Guanine nucleotide-bind 97.6 0.00046 1.6E-08 50.8 9.1 71 21-98 154-225 (354)
58 1erj_A Transcriptional repress 97.6 0.00036 1.2E-08 51.7 8.6 70 21-98 165-234 (393)
59 3odt_A Protein DOA1; ubiquitin 97.6 0.00048 1.6E-08 47.2 8.4 70 20-98 17-86 (313)
60 1got_B GT-beta; complex (GTP-b 97.6 0.00051 1.8E-08 49.8 8.9 73 18-98 267-339 (340)
61 1sq9_A Antiviral protein SKI8; 97.5 0.00062 2.1E-08 48.7 8.8 72 21-98 233-318 (397)
62 3zwl_B Eukaryotic translation 97.5 0.00059 2E-08 47.5 8.5 71 19-98 30-101 (369)
63 2xzm_R RACK1; ribosome, transl 97.5 0.00037 1.3E-08 50.5 7.6 74 21-98 118-199 (343)
64 3vl1_A 26S proteasome regulato 97.5 0.00068 2.3E-08 49.0 8.6 72 19-98 137-208 (420)
65 1got_B GT-beta; complex (GTP-b 97.5 0.00073 2.5E-08 49.0 8.8 70 21-98 55-124 (340)
66 2oit_A Nucleoporin 214KDA; NH2 97.5 0.00056 1.9E-08 52.9 8.6 71 21-98 149-219 (434)
67 3zwl_B Eukaryotic translation 97.4 0.0012 4E-08 46.0 9.2 70 20-98 73-147 (369)
68 2xzm_R RACK1; ribosome, transl 97.4 0.00083 2.8E-08 48.6 8.7 70 20-98 75-145 (343)
69 4gga_A P55CDC, cell division c 97.4 0.00066 2.3E-08 50.5 8.3 64 26-98 110-174 (420)
70 3vu4_A KMHSV2; beta-propeller 97.4 0.001 3.5E-08 48.9 9.2 71 19-98 193-267 (355)
71 1r5m_A SIR4-interacting protei 97.4 0.00088 3E-08 47.6 8.5 71 22-98 46-135 (425)
72 3vl1_A 26S proteasome regulato 97.4 0.00067 2.3E-08 49.1 8.0 76 16-98 285-361 (420)
73 2vdu_B TRNA (guanine-N(7)-)-me 97.4 0.0013 4.4E-08 49.4 9.7 72 21-98 102-176 (450)
74 2vdu_B TRNA (guanine-N(7)-)-me 97.4 0.00087 3E-08 50.3 8.7 71 21-98 195-267 (450)
75 2xyi_A Probable histone-bindin 97.4 0.00072 2.5E-08 50.7 8.3 74 20-98 230-305 (430)
76 2j04_B YDR362CP, TAU91; beta p 97.4 0.00051 1.7E-08 55.2 7.8 79 20-98 132-240 (524)
77 3gre_A Serine/threonine-protei 97.4 0.00065 2.2E-08 49.9 7.7 73 22-98 215-288 (437)
78 4e54_B DNA damage-binding prot 97.3 0.00058 2E-08 51.2 7.1 72 21-98 164-236 (435)
79 3lrv_A PRE-mRNA-splicing facto 97.3 0.00097 3.3E-08 48.1 8.1 72 19-98 168-240 (343)
80 4aez_A CDC20, WD repeat-contai 97.3 0.0013 4.5E-08 48.4 8.7 66 24-98 96-161 (401)
81 3odt_A Protein DOA1; ubiquitin 97.3 0.0015 5E-08 44.8 8.4 69 20-98 224-292 (313)
82 1nr0_A Actin interacting prote 97.3 0.0014 4.7E-08 51.9 9.3 72 20-98 447-518 (611)
83 3ow8_A WD repeat-containing pr 97.3 0.0014 4.6E-08 47.7 8.6 70 20-98 205-275 (321)
84 1r5m_A SIR4-interacting protei 97.3 0.0018 6.3E-08 45.9 9.1 70 20-98 288-357 (425)
85 2pbi_B Guanine nucleotide-bind 97.3 0.0016 5.5E-08 47.9 8.8 72 18-98 281-353 (354)
86 3v7d_B Cell division control p 97.3 0.0017 5.9E-08 48.0 8.9 68 20-98 309-377 (464)
87 1vyh_C Platelet-activating fac 97.3 0.00078 2.7E-08 50.5 7.1 70 21-98 108-177 (410)
88 3jro_A Fusion protein of prote 97.3 0.0013 4.6E-08 53.7 9.0 75 19-98 7-82 (753)
89 3iz6_a 40S ribosomal protein R 97.3 0.00092 3.2E-08 49.3 7.3 71 20-98 65-135 (380)
90 4gga_A P55CDC, cell division c 97.2 0.0022 7.5E-08 47.7 9.1 70 22-98 321-391 (420)
91 1pgu_A Actin interacting prote 97.2 0.0013 4.3E-08 49.6 7.9 73 20-98 487-568 (615)
92 3v7d_B Cell division control p 97.2 0.0016 5.6E-08 48.1 8.4 72 19-98 160-232 (464)
93 1pgu_A Actin interacting prote 97.2 0.0015 5.1E-08 49.2 8.2 69 23-98 208-279 (615)
94 2j04_A TAU60, YPL007P, hypothe 97.2 0.00093 3.2E-08 56.7 7.7 66 22-98 86-156 (588)
95 3iz6_a 40S ribosomal protein R 97.2 0.0016 5.5E-08 48.0 7.9 71 21-98 249-325 (380)
96 1erj_A Transcriptional repress 97.2 0.0023 7.8E-08 47.4 8.8 67 23-98 125-192 (393)
97 2ymu_A WD-40 repeat protein; u 97.2 0.0015 5.2E-08 49.4 7.9 69 21-98 508-576 (577)
98 2j04_B YDR362CP, TAU91; beta p 97.2 0.0012 4.2E-08 53.0 7.7 69 23-98 209-292 (524)
99 3dm0_A Maltose-binding peripla 97.2 0.0023 7.9E-08 50.9 9.1 74 19-98 380-457 (694)
100 3mkq_A Coatomer beta'-subunit; 97.1 0.0023 7.8E-08 50.5 8.8 70 20-98 54-124 (814)
101 3dw8_B Serine/threonine-protei 97.1 0.0022 7.7E-08 46.5 8.1 72 22-98 29-122 (447)
102 1vyh_C Platelet-activating fac 97.1 0.0022 7.6E-08 48.0 8.3 69 21-98 338-407 (410)
103 3jro_A Fusion protein of prote 97.1 0.0026 9E-08 52.0 9.3 75 20-98 52-128 (753)
104 3dw8_B Serine/threonine-protei 97.1 0.0025 8.7E-08 46.3 8.2 73 19-98 224-311 (447)
105 1nr0_A Actin interacting prote 97.1 0.0022 7.6E-08 50.7 8.2 71 21-98 190-266 (611)
106 2ymu_A WD-40 repeat protein; u 97.1 0.0024 8.2E-08 48.3 7.9 68 21-98 16-84 (577)
107 3dm0_A Maltose-binding peripla 97.0 0.0029 1E-07 50.3 8.7 71 20-98 429-499 (694)
108 3mkq_A Coatomer beta'-subunit; 97.0 0.002 6.9E-08 50.8 7.2 71 20-98 12-82 (814)
109 4gq1_A NUP37; propeller, trans 97.0 0.0033 1.1E-07 46.8 7.8 74 19-98 134-214 (393)
110 2oit_A Nucleoporin 214KDA; NH2 96.9 0.0021 7E-08 49.7 6.2 77 20-98 91-177 (434)
111 3sfz_A APAF-1, apoptotic pepti 96.8 0.005 1.7E-07 51.5 8.5 70 20-98 614-684 (1249)
112 1p22_A F-BOX/WD-repeat protein 96.7 0.0074 2.5E-07 44.9 8.2 63 23-98 298-361 (435)
113 4aow_A Guanine nucleotide-bind 96.7 0.011 3.7E-07 41.0 8.2 68 21-98 215-282 (340)
114 1p22_A F-BOX/WD-repeat protein 96.6 0.01 3.5E-07 44.1 8.2 57 33-98 142-198 (435)
115 1ri6_A Putative isomerase YBHE 96.6 0.017 5.7E-07 40.0 8.8 72 21-98 37-111 (343)
116 2oaj_A Protein SNI1; WD40 repe 96.6 0.009 3.1E-07 50.6 8.7 68 21-98 58-125 (902)
117 1ri6_A Putative isomerase YBHE 96.4 0.028 9.4E-07 38.9 8.7 71 22-98 231-304 (343)
118 2oaj_A Protein SNI1; WD40 repe 96.3 0.013 4.3E-07 49.7 7.8 72 17-98 13-84 (902)
119 3vu4_A KMHSV2; beta-propeller 96.1 0.017 6E-07 42.3 6.9 72 20-98 239-332 (355)
120 3sfz_A APAF-1, apoptotic pepti 96.1 0.033 1.1E-06 46.6 9.2 73 20-98 656-728 (1249)
121 3bws_A Protein LP49; two-domai 96.0 0.033 1.1E-06 40.4 7.9 73 22-98 254-330 (433)
122 2ovr_B FBW7, F-BOX/WD repeat p 95.9 0.042 1.4E-06 40.7 8.2 65 21-98 239-304 (445)
123 2ovr_B FBW7, F-BOX/WD repeat p 95.9 0.048 1.6E-06 40.4 8.4 66 21-98 199-264 (445)
124 4gq1_A NUP37; propeller, trans 95.8 0.036 1.2E-06 41.2 7.4 76 19-98 13-116 (393)
125 2ojh_A Uncharacterized protein 95.7 0.053 1.8E-06 36.1 7.2 71 22-98 85-156 (297)
126 1l0q_A Surface layer protein; 95.6 0.068 2.3E-06 38.2 8.2 68 23-98 33-101 (391)
127 1pby_B Quinohemoprotein amine 95.3 0.11 3.6E-06 35.8 8.0 65 23-98 242-306 (337)
128 2w18_A PALB2, fancn, partner a 95.2 0.026 8.9E-07 45.1 5.3 48 46-98 304-353 (356)
129 2ojh_A Uncharacterized protein 95.2 0.048 1.7E-06 36.3 5.8 70 21-98 41-113 (297)
130 1l0q_A Surface layer protein; 95.2 0.14 4.8E-06 36.5 8.6 73 21-98 199-271 (391)
131 3scy_A Hypothetical bacterial 95.2 0.17 5.8E-06 36.2 9.0 69 24-98 261-333 (361)
132 3bws_A Protein LP49; two-domai 95.2 0.05 1.7E-06 39.5 6.2 77 19-98 58-149 (433)
133 3scy_A Hypothetical bacterial 95.1 0.17 5.7E-06 36.2 8.7 72 22-98 50-125 (361)
134 3hfq_A Uncharacterized protein 95.0 0.14 4.9E-06 36.2 8.1 71 22-98 240-313 (347)
135 3hfq_A Uncharacterized protein 94.1 0.23 7.8E-06 35.2 7.3 72 22-98 40-113 (347)
136 1jof_A Carboxy-CIS,CIS-muconat 94.1 0.45 1.5E-05 34.6 9.1 71 22-98 145-220 (365)
137 2j04_A TAU60, YPL007P, hypothe 94.0 0.22 7.4E-06 42.3 8.2 68 22-98 130-207 (588)
138 3o4h_A Acylamino-acid-releasin 94.0 0.11 3.8E-06 40.1 5.9 78 6-91 6-83 (582)
139 2ecf_A Dipeptidyl peptidase IV 93.6 0.22 7.4E-06 39.2 7.1 74 21-98 286-363 (741)
140 2hqs_A Protein TOLB; TOLB, PAL 93.4 0.36 1.2E-05 36.4 7.8 70 22-97 179-249 (415)
141 1jmx_B Amine dehydrogenase; ox 93.3 0.35 1.2E-05 33.4 6.9 71 22-98 43-130 (349)
142 1jmx_B Amine dehydrogenase; ox 93.0 0.58 2E-05 32.3 7.8 65 23-98 256-321 (349)
143 1nir_A Nitrite reductase; hemo 92.0 0.98 3.3E-05 35.9 8.9 73 22-98 179-253 (543)
144 1z68_A Fibroblast activation p 91.8 0.39 1.3E-05 37.9 6.3 68 23-98 17-95 (719)
145 2hqs_A Protein TOLB; TOLB, PAL 91.8 0.75 2.6E-05 34.6 7.7 63 31-98 141-208 (415)
146 1xip_A Nucleoporin NUP159; bet 91.7 0.64 2.2E-05 36.7 7.5 60 23-98 128-187 (388)
147 1jof_A Carboxy-CIS,CIS-muconat 91.6 0.89 3E-05 33.0 7.6 75 23-98 255-337 (365)
148 3u4y_A Uncharacterized protein 90.9 1.3 4.3E-05 30.7 7.6 72 21-98 220-300 (331)
149 3o4h_A Acylamino-acid-releasin 90.9 1.1 3.6E-05 34.6 7.8 69 25-98 153-223 (582)
150 2z3z_A Dipeptidyl aminopeptida 90.5 0.84 2.9E-05 35.8 7.1 67 24-93 183-279 (706)
151 3u4y_A Uncharacterized protein 90.5 1.9 6.3E-05 29.9 8.1 69 24-98 85-156 (331)
152 2gop_A Trilobed protease; beta 89.8 2.2 7.7E-05 29.8 8.2 63 23-91 60-123 (347)
153 2z3z_A Dipeptidyl aminopeptida 89.7 1.4 4.6E-05 34.6 7.6 77 21-98 257-338 (706)
154 1pby_B Quinohemoprotein amine 89.6 1.9 6.5E-05 29.4 7.5 70 23-98 35-120 (337)
155 2ecf_A Dipeptidyl peptidase IV 89.6 1.5 5E-05 34.5 7.7 82 13-98 25-134 (741)
156 2w18_A PALB2, fancn, partner a 89.2 0.86 2.9E-05 36.3 6.2 53 46-98 156-208 (356)
157 3vgz_A Uncharacterized protein 88.4 2.2 7.6E-05 29.5 7.2 76 19-98 38-116 (353)
158 3vgz_A Uncharacterized protein 86.6 4.7 0.00016 27.8 8.0 70 21-98 230-299 (353)
159 1nir_A Nitrite reductase; hemo 85.8 3.3 0.00011 32.8 7.8 71 23-98 281-351 (543)
160 1xfd_A DIP, dipeptidyl aminope 84.9 4.8 0.00016 31.4 8.1 45 21-65 254-298 (723)
161 1k32_A Tricorn protease; prote 83.9 4.2 0.00015 34.2 7.9 70 21-98 378-457 (1045)
162 1z68_A Fibroblast activation p 82.9 2.1 7.2E-05 33.7 5.4 68 22-98 60-135 (719)
163 3c5m_A Oligogalacturonate lyas 82.4 2.4 8.1E-05 29.8 5.0 69 24-98 38-107 (396)
164 1xfd_A DIP, dipeptidyl aminope 82.3 3.6 0.00012 32.1 6.5 73 22-98 61-139 (723)
165 4a5s_A Dipeptidyl peptidase 4 81.2 3.3 0.00011 33.4 6.1 41 19-65 14-54 (740)
166 3pe7_A Oligogalacturonate lyas 76.8 4.8 0.00016 28.4 5.2 69 25-98 39-107 (388)
167 1k32_A Tricorn protease; prote 73.0 9.4 0.00032 32.1 6.8 69 21-94 420-494 (1045)
168 3c5m_A Oligogalacturonate lyas 72.9 7.8 0.00027 27.1 5.4 69 21-92 187-258 (396)
169 3ei3_A DNA damage-binding prot 72.9 9.5 0.00032 34.1 7.1 52 47-98 532-587 (1158)
170 1xip_A Nucleoporin NUP159; bet 70.9 18 0.0006 28.4 7.6 64 20-98 87-151 (388)
171 2gop_A Trilobed protease; beta 70.1 19 0.00065 24.9 6.9 41 24-64 106-170 (347)
172 3pe7_A Oligogalacturonate lyas 68.0 10 0.00036 26.6 5.2 70 27-98 295-378 (388)
173 4a5s_A Dipeptidyl peptidase 4 66.8 17 0.0006 29.2 6.9 39 20-58 258-296 (740)
174 3azo_A Aminopeptidase; POP fam 66.0 13 0.00046 28.7 5.8 70 21-98 241-319 (662)
175 3azo_A Aminopeptidase; POP fam 61.1 34 0.0012 26.4 7.3 73 22-98 188-268 (662)
176 3pbp_A Nucleoporin NUP82; beta 57.9 15 0.00051 30.5 5.0 64 24-98 127-195 (452)
177 3kvp_A Uncharacterized protein 55.4 11 0.00039 24.3 3.1 35 30-65 19-58 (72)
178 3ei3_A DNA damage-binding prot 48.2 33 0.0011 30.6 6.0 41 34-74 844-891 (1158)
179 3avx_A Elongation factor TS, e 47.2 6.7 0.00023 36.4 1.5 15 24-38 1253-1267(1289)
180 2oiz_A Aromatic amine dehydrog 46.2 39 0.0013 24.7 5.3 37 24-65 307-343 (361)
181 2oiz_A Aromatic amine dehydrog 41.3 1E+02 0.0034 22.5 7.0 46 46-98 285-330 (361)
182 2bkl_A Prolyl endopeptidase; m 40.5 43 0.0015 26.6 5.0 44 23-66 364-407 (695)
183 1i2h_A PSD-ZIP45(homer-1C/VESL 39.3 71 0.0024 23.0 5.6 44 28-71 28-72 (168)
184 1qc6_A EVH1 domain from ENA/VA 38.3 44 0.0015 22.4 4.2 44 28-71 22-69 (130)
185 2xdw_A Prolyl endopeptidase; a 37.9 1.5E+02 0.0051 23.5 7.9 70 19-94 122-193 (710)
186 3eaf_A ABC transporter, substr 35.7 33 0.0011 25.0 3.4 60 7-76 315-380 (391)
187 1qks_A Cytochrome CD1 nitrite 35.2 1.4E+02 0.0048 24.1 7.4 50 44-98 174-223 (567)
188 2ntk_A IMP cyclohydrolase; alp 31.7 48 0.0016 25.2 3.8 42 34-77 24-65 (222)
189 3c5b_A Putative uncharacterize 31.6 32 0.0011 27.4 3.0 46 9-58 159-206 (335)
190 3e5z_A Putative gluconolactona 31.2 1.2E+02 0.0042 20.5 8.0 66 24-98 30-95 (296)
191 1qks_A Cytochrome CD1 nitrite 31.1 1.3E+02 0.0045 24.2 6.6 71 24-98 344-417 (567)
192 1ddw_A GLGF-domain protein hom 30.5 1E+02 0.0035 20.6 5.0 42 28-69 23-65 (120)
193 1evh_A WH1 domain, protein (ME 29.9 86 0.0029 20.6 4.5 40 28-67 22-66 (112)
194 3k6s_A Integrin alpha-X; cell 28.0 73 0.0025 28.4 4.9 48 36-93 400-450 (1095)
195 3v4v_A Integrin alpha-4; cell 27.8 1.5E+02 0.0051 24.6 6.5 48 36-93 234-284 (597)
196 3t3p_A Integrin alpha-IIB; int 26.7 62 0.0021 26.2 3.9 47 35-93 251-300 (457)
197 2qrd_A SNF1-like protein kinas 26.6 61 0.0021 22.5 3.4 27 22-57 56-88 (137)
198 1yr2_A Prolyl oligopeptidase; 25.5 84 0.0029 25.2 4.5 42 23-64 408-449 (741)
199 3rzi_A Probable 3-deoxy-D-arab 25.2 8.9 0.0003 32.1 -1.4 39 28-74 270-308 (462)
200 3ctr_A Poly(A)-specific ribonu 24.9 48 0.0016 22.3 2.5 26 21-46 28-53 (101)
201 1fdq_A Fatty acid-binding prot 24.6 1.3E+02 0.0046 19.9 4.8 30 35-65 90-119 (131)
202 2vpj_A Kelch-like protein 12; 24.2 93 0.0032 21.4 4.0 56 34-93 207-264 (301)
203 2xn4_A Kelch-like protein 2; s 23.5 82 0.0028 21.8 3.6 55 35-93 17-72 (302)
204 2le1_A Uncharacterized protein 23.4 50 0.0017 21.1 2.3 31 27-57 28-58 (151)
205 2xdw_A Prolyl endopeptidase; a 23.3 2E+02 0.0067 22.8 6.1 44 23-66 381-426 (710)
206 2mad_H Methylamine dehydrogena 23.1 2.3E+02 0.008 21.0 7.3 48 47-98 298-346 (373)
207 3e5z_A Putative gluconolactona 21.6 1.9E+02 0.0066 19.5 7.9 33 23-59 173-206 (296)
208 2bkl_A Prolyl endopeptidase; m 20.4 3.2E+02 0.011 21.6 7.2 64 28-98 278-345 (695)
209 3hx6_A Type 4 fimbrial biogene 20.3 2.9E+02 0.01 23.3 6.9 56 36-95 209-277 (570)
210 1whv_A Poly(A)-specific ribonu 20.1 44 0.0015 22.5 1.5 25 21-45 38-62 (100)
No 1
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.52 E-value=6.4e-14 Score=98.70 Aligned_cols=93 Identities=54% Similarity=1.116 Sum_probs=84.4
Q ss_pred CCCccceehhhhhcCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCce
Q psy9278 6 KLDKPQIICLVEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERY 85 (98)
Q Consensus 6 ~~~kPQIIehi~ksl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~ 85 (98)
.+++||+++|+.+..+..+++++|-|...++++.|+..++.|.|+||+++.+++..+...++..++.|..|-..+...+.
T Consensus 3 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 82 (357)
T 3i2n_A 3 AFEKPQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRY 82 (357)
T ss_dssp --CCCCEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCC
T ss_pred ccChhHHhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCce
Confidence 47899999999999999999999999999999999999999999999999999998988899999999999887666789
Q ss_pred EEEeecCceEEeC
Q psy9278 86 LATGDFEGKLQIW 98 (98)
Q Consensus 86 lAtGdf~G~L~iw 98 (98)
||+|+.||.+.||
T Consensus 83 l~~~~~dg~i~iw 95 (357)
T 3i2n_A 83 LATGDFGGNLHIW 95 (357)
T ss_dssp EEEEETTSCEEEE
T ss_pred EEEecCCCeEEEE
Confidence 9999999999998
No 2
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=98.14 E-value=1.7e-05 Score=54.24 Aligned_cols=80 Identities=10% Similarity=0.228 Sum_probs=60.5
Q ss_pred hhhhhcCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCc--eeEEEEec-ccCceeeeecCCCCCCCceEEEee
Q psy9278 14 CLVEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQ--PELVKTVE-KPNAFKCGTFNASPLSERYLATGD 90 (98)
Q Consensus 14 ehi~ksl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~--l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGd 90 (98)
+++-+...-.+.++.|-|....+++.+ ..|.|+||+++.++ .+++..++ +..++.|..|-.+. ..+.||+|+
T Consensus 4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-d~~~l~s~~ 78 (351)
T 3f3f_A 4 QPFDSGHDDLVHDVVYDFYGRHVATCS----SDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPE-YGRIIASAS 78 (351)
T ss_dssp CCEECCCSSCEEEEEECSSSSEEEEEE----TTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGG-GCSEEEEEE
T ss_pred cccCcccccceeEEEEcCCCCEEEEee----CCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCC-CCCEEEEEc
Confidence 334445567899999999877666554 57999999998653 35666655 78899999995431 146899999
Q ss_pred cCceEEeC
Q psy9278 91 FEGKLQIW 98 (98)
Q Consensus 91 f~G~L~iw 98 (98)
.||.+.||
T Consensus 79 ~dg~v~vw 86 (351)
T 3f3f_A 79 YDKTVKLW 86 (351)
T ss_dssp TTSCEEEE
T ss_pred CCCeEEEE
Confidence 99999998
No 3
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=98.12 E-value=2e-05 Score=55.67 Aligned_cols=71 Identities=8% Similarity=0.155 Sum_probs=58.6
Q ss_pred CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
.-.++.+.|-|....+++.+ ..|.|+||+++.++++.+..+. +..++.|..|-.. .+.||+|+.||.+.||
T Consensus 8 ~~~i~~~~~s~~~~~l~~~~----~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~l~~~~~dg~i~vw 79 (372)
T 1k8k_C 8 VEPISCHAWNKDRTQIAICP----NNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPD---SNRIVTCGTDRNAYVW 79 (372)
T ss_dssp SSCCCEEEECTTSSEEEEEC----SSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETT---TTEEEEEETTSCEEEE
T ss_pred CCCeEEEEECCCCCEEEEEe----CCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCC---CCEEEEEcCCCeEEEE
Confidence 34578999999876555544 3789999999999887888775 7889999999653 5789999999999998
No 4
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=98.10 E-value=4.8e-06 Score=59.74 Aligned_cols=81 Identities=11% Similarity=0.272 Sum_probs=62.6
Q ss_pred CCccceehhhhhcCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCce
Q psy9278 7 LDKPQIICLVEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERY 85 (98)
Q Consensus 7 ~~kPQIIehi~ksl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~ 85 (98)
|..|++..+.+ -.+.++.|-|....+ +.|+ ..|.|+||+++.++.+++..++ +..++.|..|-.. .+.
T Consensus 1 m~~~~~~~~~~----~~v~~~~~s~~g~~l-~~~~---~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~---~~~ 69 (377)
T 3dwl_C 1 MATSQVLHILP----KPSYEHAFNSQRTEF-VTTT---ATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPK---SNR 69 (377)
T ss_dssp -CCEEEEEECS----SCCSCCEECSSSSEE-ECCC---SSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTT---TCC
T ss_pred CCcceeEecCC----CcEEEEEECCCCCEE-EEec---CCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCC---CCE
Confidence 45677665433 367899999976554 4553 4799999999998777777776 7889999999654 468
Q ss_pred EEEeecCceEEeC
Q psy9278 86 LATGDFEGKLQIW 98 (98)
Q Consensus 86 lAtGdf~G~L~iw 98 (98)
||+|+.||.+.||
T Consensus 70 l~s~s~d~~v~vw 82 (377)
T 3dwl_C 70 IVTCSQDRNAYVY 82 (377)
T ss_dssp EEEEETTSSEEEC
T ss_pred EEEEeCCCeEEEE
Confidence 9999999999998
No 5
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=98.09 E-value=1.8e-05 Score=59.09 Aligned_cols=70 Identities=13% Similarity=0.361 Sum_probs=54.8
Q ss_pred CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEE---ecccCceeeeecCCCCCCCceEEEeecCceEEe
Q psy9278 21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKT---VEKPNAFKCGTFNASPLSERYLATGDFEGKLQI 97 (98)
Q Consensus 21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e---~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~i 97 (98)
...++++.|.|.. +++ .|+ ..|.|+||+++.++...+.+ .++...+.|..|-.. .+.||+|+.||.+.|
T Consensus 82 ~~~v~~~~~s~d~-~l~-~~s---~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spd---g~~l~sgs~d~~i~i 153 (344)
T 4gqb_B 82 EAGVADLTWVGER-GIL-VAS---DSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSS---GTQAVSGSKDICIKV 153 (344)
T ss_dssp SSCEEEEEEETTT-EEE-EEE---TTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTT---SSEEEEEETTSCEEE
T ss_pred CCCEEEEEEeCCC-eEE-EEE---CCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCC---CCEEEEEeCCCeEEE
Confidence 3468999999984 555 443 57899999999887554433 357889999999543 478999999999999
Q ss_pred C
Q psy9278 98 W 98 (98)
Q Consensus 98 w 98 (98)
|
T Consensus 154 w 154 (344)
T 4gqb_B 154 W 154 (344)
T ss_dssp E
T ss_pred E
Confidence 8
No 6
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=98.05 E-value=1.8e-05 Score=58.55 Aligned_cols=72 Identities=7% Similarity=0.081 Sum_probs=59.1
Q ss_pred CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
....+..+.|-|...++++.|+ ..|.|+||+++.+++ +....+...+.|..|-. ...+.||+|+.||.+.||
T Consensus 268 ~~~~v~~l~~sp~~~~~lasgs---~D~~i~iwd~~~~~~--~~~~~H~~~V~~vafsP--~d~~~l~s~s~Dg~v~iW 339 (357)
T 4g56_B 268 HSQNITGLAYSYHSSPFLASIS---EDCTVAVLDADFSEV--FRDLSHRDFVTGVAWSP--LDHSKFTTVGWDHKVLHH 339 (357)
T ss_dssp CSSCEEEEEECSSSSCCEEEEE---TTSCEEEECTTSCEE--EEECCCSSCEEEEEECS--SSTTEEEEEETTSCEEEE
T ss_pred cceeEEEEEEcCCCCCEEEEEe---CCCEEEEEECCCCcE--eEECCCCCCEEEEEEeC--CCCCEEEEEcCCCeEEEE
Confidence 3456789999999999888775 368999999988864 55667889999999932 346789999999999998
No 7
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=98.01 E-value=4.5e-05 Score=55.69 Aligned_cols=73 Identities=21% Similarity=0.333 Sum_probs=60.6
Q ss_pred cCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEe
Q psy9278 19 SLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQI 97 (98)
Q Consensus 19 sl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~i 97 (98)
...-.+..+.|-|+...+++-+ ..|.+.||+++.++.+++..++ +..++.|..|-.. .+.||+|+.||.+.|
T Consensus 59 ~h~~~v~~~~~sp~g~~l~s~s----~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~---~~~l~s~s~D~~v~i 131 (345)
T 3fm0_A 59 GHQRTVRKVAWSPCGNYLASAS----FDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPS---GNLLATCSRDKSVWV 131 (345)
T ss_dssp SCSSCEEEEEECTTSSEEEEEE----TTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTT---SSEEEEEETTSCEEE
T ss_pred ccCCcEEEEEECCCCCEEEEEE----CCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCC---CCEEEEEECCCeEEE
Confidence 4456789999999887666555 5789999999999988888877 7789999999654 478999999999999
Q ss_pred C
Q psy9278 98 W 98 (98)
Q Consensus 98 w 98 (98)
|
T Consensus 132 w 132 (345)
T 3fm0_A 132 W 132 (345)
T ss_dssp E
T ss_pred E
Confidence 8
No 8
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=98.01 E-value=3.8e-05 Score=54.02 Aligned_cols=75 Identities=15% Similarity=0.284 Sum_probs=60.6
Q ss_pred cCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEe
Q psy9278 19 SLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQI 97 (98)
Q Consensus 19 sl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~i 97 (98)
..+-.+.++.|-|....+++.+ ..|.|.||+++.++.+++..++ +..++.|..|-... ..+.||+|+.||.+.|
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~----~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~~l~s~~~dg~v~i 83 (379)
T 3jrp_A 9 AHNELIHDAVLDYYGKRLATCS----SDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK-FGTILASCSYDGKVLI 83 (379)
T ss_dssp ECCCCEEEEEECSSSSEEEEEE----TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGG-GCSEEEEEETTSCEEE
T ss_pred CCcccEEEEEEcCCCCEEEEEE----CCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCC-CCCEEEEeccCCEEEE
Confidence 3456789999999877666554 4799999999988888888776 78899999995331 1468999999999999
Q ss_pred C
Q psy9278 98 W 98 (98)
Q Consensus 98 w 98 (98)
|
T Consensus 84 w 84 (379)
T 3jrp_A 84 W 84 (379)
T ss_dssp E
T ss_pred E
Confidence 8
No 9
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=98.00 E-value=3e-05 Score=55.97 Aligned_cols=81 Identities=15% Similarity=0.289 Sum_probs=57.9
Q ss_pred ehhhhhcCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeec
Q psy9278 13 ICLVEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDF 91 (98)
Q Consensus 13 Iehi~ksl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf 91 (98)
|..+.+...-.+.+++|-|...++++-+ ..|.|+||+++.++..++..++ +..++.|..|-... ..+.||+|+.
T Consensus 5 ~~~~~~~H~~~V~~v~~s~~g~~lasgs----~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~-~~~~l~s~s~ 79 (316)
T 3bg1_A 5 INTVDTSHEDMIHDAQMDYYGTRLATCS----SDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPM-YGNILASCSY 79 (316)
T ss_dssp ---------CCEEEEEECGGGCEEEEEE----TTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGG-GSSCEEEEET
T ss_pred eeeecccccCeEEEeeEcCCCCEEEEEe----CCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCC-CCCEEEEEEC
Confidence 3334444556789999999877666554 6799999999988776666665 78899999995321 1358999999
Q ss_pred CceEEeC
Q psy9278 92 EGKLQIW 98 (98)
Q Consensus 92 ~G~L~iw 98 (98)
||.+.||
T Consensus 80 D~~v~iW 86 (316)
T 3bg1_A 80 DRKVIIW 86 (316)
T ss_dssp TSCEEEE
T ss_pred CCEEEEE
Confidence 9999998
No 10
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=97.99 E-value=3.1e-05 Score=53.49 Aligned_cols=69 Identities=17% Similarity=0.388 Sum_probs=53.3
Q ss_pred CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEe-cccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTV-EKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~-e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
+|-..-+-|=|. .++++|. .+.|.||+++.|++..+-+. ++...+.|..|-.. .+.||+|+.||.+.||
T Consensus 25 d~y~~~l~WS~~--~~lAvg~----D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~---~~~l~sgs~Dg~v~iw 94 (318)
T 4ggc_A 25 DYYLNLVDWSSG--NVLAVAL----DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKE---GNYLAVGTSSAEVQLW 94 (318)
T ss_dssp CTTCBCEEECTT--SEEEEEE----TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTT---SSEEEEEETTSEEEEE
T ss_pred cccceEEEECCC--CEEEEEe----CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCC---CCEEEEEECCCcEEEe
Confidence 344455778654 5888884 57899999999886655554 46678999999654 4799999999999998
No 11
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=97.98 E-value=9.4e-06 Score=58.41 Aligned_cols=73 Identities=11% Similarity=0.266 Sum_probs=60.2
Q ss_pred ceeeeeeecCCccEEEEcccc-------CCcccEEEEEecCCce-eEEEEecccCceeeeecCCCCCCCceEEEeecCce
Q psy9278 23 QLFDCKWMPCSAKFIVLGMKP-------KGTGSIQMYEINDGQP-ELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGK 94 (98)
Q Consensus 23 T~fD~kWIP~SArfV~lG~~p-------rgtG~iqIyeL~~~~l-~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~ 94 (98)
.+..+.|-|...++++.|... ...|.|+||+++.++. +.+...+++.++.|..|-. ..+.||+|+.||.
T Consensus 14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~dg~ 90 (416)
T 2pm9_A 14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSH---NNKIIAGALDNGS 90 (416)
T ss_dssp ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECS---SSSCEEEEESSSC
T ss_pred hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECC---CCCeEEEEccCCe
Confidence 577899999988899988554 3578999999988864 3666677889999999944 3578999999999
Q ss_pred EEeC
Q psy9278 95 LQIW 98 (98)
Q Consensus 95 L~iw 98 (98)
+.||
T Consensus 91 v~vw 94 (416)
T 2pm9_A 91 LELY 94 (416)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9998
No 12
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=97.96 E-value=5.4e-05 Score=55.22 Aligned_cols=86 Identities=13% Similarity=0.273 Sum_probs=64.3
Q ss_pred CCccceehhhhhcCCcceeeeeeecCC---ccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCC
Q psy9278 7 LDKPQIICLVEKSLDYQLFDCKWMPCS---AKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLS 82 (98)
Q Consensus 7 ~~kPQIIehi~ksl~yT~fD~kWIP~S---ArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~ 82 (98)
.+...++....+..+-.++.+.|-|.. .++++.|+ ..|.++||+++.+++.+....+ +..++.|..|...
T Consensus 18 ~~~~g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs---~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~--- 91 (321)
T 3ow8_A 18 TNQYGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGS---LDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHT--- 91 (321)
T ss_dssp ---CEEEEEETTSSSSCEEEEEEC-------CEEEEEE---TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSS---
T ss_pred hhhhhheeeecccCCCcEEEEEEecCCCCCCCEEEEEc---CCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCC---
Confidence 344455555556777899999999863 45666664 5789999999999888877766 8889999999654
Q ss_pred CceEEEeecCceEEeC
Q psy9278 83 ERYLATGDFEGKLQIW 98 (98)
Q Consensus 83 ~r~lAtGdf~G~L~iw 98 (98)
.+.||+|+.||.+.||
T Consensus 92 ~~~l~s~s~D~~i~lW 107 (321)
T 3ow8_A 92 LPIAASSSLDAHIRLW 107 (321)
T ss_dssp SSEEEEEETTSEEEEE
T ss_pred CCEEEEEeCCCcEEEE
Confidence 3689999999999998
No 13
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=97.96 E-value=5e-05 Score=53.17 Aligned_cols=73 Identities=15% Similarity=0.317 Sum_probs=56.9
Q ss_pred cCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCc--eeEEEEecccCceeeeecCCCCCCCc-eEEEeecCceE
Q psy9278 19 SLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQ--PELVKTVEKPNAFKCGTFNASPLSER-YLATGDFEGKL 95 (98)
Q Consensus 19 sl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~--l~~~~e~e~~~~~KC~TFgaSsl~~r-~lAtGdf~G~L 95 (98)
...-.++.+.|-|....+++.+ ..|.|+||+++.++ ..+.....+..++.|..|-.. .+ .||+|+.||.+
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~----~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~~dg~i 81 (342)
T 1yfq_A 9 APKDYISDIKIIPSKSLLLITS----WDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN---TDLQIYVGTVQGEI 81 (342)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEE----TTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEES---SSEEEEEEETTSCE
T ss_pred CCCCcEEEEEEcCCCCEEEEEc----CCCeEEEEEeCCCCccccceeeeecCCceEEEEECCC---CCcEEEEEcCCCeE
Confidence 3445789999999776665554 67999999999887 223334467889999999654 46 89999999999
Q ss_pred EeC
Q psy9278 96 QIW 98 (98)
Q Consensus 96 ~iw 98 (98)
.+|
T Consensus 82 ~~w 84 (342)
T 1yfq_A 82 LKV 84 (342)
T ss_dssp EEE
T ss_pred EEE
Confidence 998
No 14
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=97.96 E-value=7.5e-05 Score=53.28 Aligned_cols=76 Identities=17% Similarity=0.327 Sum_probs=58.5
Q ss_pred CCcceeeeeeecCC------------ccEEEEccccCCcccEEEEEecCCc--eeEEEEec-ccCceeeeecCCCCCCCc
Q psy9278 20 LDYQLFDCKWMPCS------------AKFIVLGMKPKGTGSIQMYEINDGQ--PELVKTVE-KPNAFKCGTFNASPLSER 84 (98)
Q Consensus 20 l~yT~fD~kWIP~S------------ArfV~lG~~prgtG~iqIyeL~~~~--l~~~~e~e-~~~~~KC~TFgaSsl~~r 84 (98)
....+..+.|-|.. .++++.|+ ..|.|+||+++.++ ..++..++ +...+.|..|-......+
T Consensus 144 h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs---~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~ 220 (297)
T 2pm7_B 144 HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG---ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS 220 (297)
T ss_dssp CSSCEEEEEECCCC------------CCEEEEEE---TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE
T ss_pred ccCccceEeecCCcccccccCCCCCCcceEEEEc---CCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCce
Confidence 34568889999974 35566653 47899999998776 44555665 778899999976654467
Q ss_pred eEEEeecCceEEeC
Q psy9278 85 YLATGDFEGKLQIW 98 (98)
Q Consensus 85 ~lAtGdf~G~L~iw 98 (98)
.||+|+.||.+.||
T Consensus 221 ~las~s~D~~v~iW 234 (297)
T 2pm7_B 221 YMASVSQDRTCIIW 234 (297)
T ss_dssp EEEEEETTSCEEEE
T ss_pred EEEEEECCCcEEEE
Confidence 99999999999998
No 15
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=97.93 E-value=8.2e-05 Score=51.89 Aligned_cols=76 Identities=13% Similarity=0.239 Sum_probs=58.9
Q ss_pred hhcCCcceeeeeeecCC--ccEEEEccccCCcccEEEEEecCCceeEEEE-ecccCceeeeecCCCCCCCceEEEeecCc
Q psy9278 17 EKSLDYQLFDCKWMPCS--AKFIVLGMKPKGTGSIQMYEINDGQPELVKT-VEKPNAFKCGTFNASPLSERYLATGDFEG 93 (98)
Q Consensus 17 ~ksl~yT~fD~kWIP~S--ArfV~lG~~prgtG~iqIyeL~~~~l~~~~e-~e~~~~~KC~TFgaSsl~~r~lAtGdf~G 93 (98)
.+..+-.+.++.|-|.. -++++.|. ..|.|+||+++.+...+... ..+..++.|..|-. ..+.||+|+.||
T Consensus 35 ~~~h~~~v~~~~~~~~~~~g~~l~~~~---~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~l~s~~~dg 108 (368)
T 3mmy_A 35 TSSPDDSIGCLSFSPPTLPGNFLIAGS---WANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSD---DGSKVFTASCDK 108 (368)
T ss_dssp SSCCSSCEEEEEECCTTSSSEEEEEEE---TTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECT---TSSEEEEEETTS
T ss_pred ccCCCCceEEEEEcCCCCCceEEEEEC---CCCcEEEEEcCCCCceeEEEeccccCCEEEEEECc---CCCEEEEEcCCC
Confidence 34556789999999997 56666664 46899999999844444333 34788999999965 357899999999
Q ss_pred eEEeC
Q psy9278 94 KLQIW 98 (98)
Q Consensus 94 ~L~iw 98 (98)
.+.||
T Consensus 109 ~v~iw 113 (368)
T 3mmy_A 109 TAKMW 113 (368)
T ss_dssp EEEEE
T ss_pred cEEEE
Confidence 99998
No 16
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=97.90 E-value=7.1e-05 Score=52.19 Aligned_cols=74 Identities=15% Similarity=0.315 Sum_probs=58.4
Q ss_pred hcCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEe
Q psy9278 18 KSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQI 97 (98)
Q Consensus 18 ksl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~i 97 (98)
......+.++.|-|+...+++.+ ..|.|.||+++.+++.. ...+..++.|..|-.+. ..+.|++|+.||.+.|
T Consensus 83 ~~h~~~v~~~~~~~~~~~l~s~~----~dg~v~iwd~~~~~~~~--~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~v 155 (368)
T 3mmy_A 83 QMHTGPVLDVCWSDDGSKVFTAS----CDKTAKMWDLSSNQAIQ--IAQHDAPVKTIHWIKAP-NYSCVMTGSWDKTLKF 155 (368)
T ss_dssp EECSSCEEEEEECTTSSEEEEEE----TTSEEEEEETTTTEEEE--EEECSSCEEEEEEEECS-SCEEEEEEETTSEEEE
T ss_pred ccccCCEEEEEECcCCCEEEEEc----CCCcEEEEEcCCCCcee--eccccCceEEEEEEeCC-CCCEEEEccCCCcEEE
Confidence 34567789999999887777655 57899999999887554 45588899999993322 2468999999999999
Q ss_pred C
Q psy9278 98 W 98 (98)
Q Consensus 98 w 98 (98)
|
T Consensus 156 w 156 (368)
T 3mmy_A 156 W 156 (368)
T ss_dssp E
T ss_pred E
Confidence 8
No 17
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=97.90 E-value=4.4e-05 Score=54.48 Aligned_cols=73 Identities=15% Similarity=0.298 Sum_probs=57.4
Q ss_pred CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
.-.++++.|=|...++++-| ..|.|+||+++.+..+++..++ +..++.|..|.... ..+.||+|+.||.+.||
T Consensus 9 ~~~V~~~~~s~~g~~las~s----~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~-~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 9 NEMIHDAVMDYYGKRMATCS----SDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK-FGTILASCSYDGKVMIW 82 (297)
T ss_dssp SSCEEEEEECTTSSEEEEEE----TTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGG-GCSEEEEEETTTEEEEE
T ss_pred cCceEEEEECCCCCEEEEEe----CCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCC-cCCEEEEEcCCCEEEEE
Confidence 34688999999877776655 6799999999877666666665 78899999995431 13589999999999998
No 18
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=97.90 E-value=4.8e-05 Score=55.04 Aligned_cols=70 Identities=16% Similarity=0.229 Sum_probs=56.3
Q ss_pred cceeeeeeec--CCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 22 YQLFDCKWMP--CSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 22 yT~fD~kWIP--~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
-.+.++.|-| ....|++.+ ..|.|.||+++.++...+.+.....++.|..|-.. .+.||+|+.||.+.||
T Consensus 126 ~~v~~~~~~~~~~~~~l~s~s----~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pd---g~~lasg~~dg~i~iw 197 (343)
T 3lrv_A 126 NEIIYMYGHNEVNTEYFIWAD----NRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKD---SLLLALYSPDGILDVY 197 (343)
T ss_dssp SCEEEEECCC---CCEEEEEE----TTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTT---SCEEEEECTTSCEEEE
T ss_pred CCEEEEEcCCCCCCCEEEEEe----CCCcEEEEECCCCcEEEEEecCCCCceEEEEECCC---CCEEEEEcCCCEEEEE
Confidence 4589999999 665555555 68999999999998866665666778999999654 5799999999999998
No 19
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=97.87 E-value=5.7e-05 Score=54.61 Aligned_cols=74 Identities=16% Similarity=0.272 Sum_probs=60.7
Q ss_pred CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEe-cccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTV-EKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~-e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
.+-.++.+.|-|...++++.|+. .|.|+||+++.++.....+. .+..++.|..|-.. ..+.||+|+.||.+.||
T Consensus 72 h~~~v~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~~l~s~~~d~~i~iw 146 (383)
T 3ei3_B 72 FDRRVTSLEWHPTHPTTVAVGSK---GGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQF--NTNQLFVSSIRGATTLR 146 (383)
T ss_dssp CSSCEEEEEECSSCTTEEEEEEB---TSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETT--EEEEEEEEETTTEEEEE
T ss_pred CCCCEEEEEECCCCCCEEEEEcC---CCeEEEEeCCCcccceeeecCCcCCceeEEEeCCC--CCCEEEEEeCCCEEEEE
Confidence 45678999999998677777754 78999999998887776664 58889999999442 35799999999999998
No 20
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=97.86 E-value=8.6e-05 Score=51.93 Aligned_cols=73 Identities=7% Similarity=0.208 Sum_probs=56.6
Q ss_pred CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEE--ecccCceeeeecCCCCCCCceEEEeecCceEEe
Q psy9278 20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKT--VEKPNAFKCGTFNASPLSERYLATGDFEGKLQI 97 (98)
Q Consensus 20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e--~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~i 97 (98)
....+.+++|-|...++++.|. ..|.|.||+++.++....-. ..+...+.|..|-.+ .+.||+|+.||.+.+
T Consensus 114 ~~~~i~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~i 187 (366)
T 3k26_A 114 HGNAINELKFHPRDPNLLLSVS---KDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL---GEKIMSCGMDHSLKL 187 (366)
T ss_dssp CCSCEEEEEECSSCTTEEEEEE---TTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTT---SSEEEEEETTSCEEE
T ss_pred CCCcEEEEEECCCCCCEEEEEe---CCCeEEEEEeecCeEEEEecccccccCceeEEEECCC---CCEEEEecCCCCEEE
Confidence 4567899999996666666664 37899999998886443332 247889999999653 478999999999999
Q ss_pred C
Q psy9278 98 W 98 (98)
Q Consensus 98 w 98 (98)
|
T Consensus 188 ~ 188 (366)
T 3k26_A 188 W 188 (366)
T ss_dssp E
T ss_pred E
Confidence 8
No 21
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=97.84 E-value=4.5e-05 Score=57.23 Aligned_cols=73 Identities=15% Similarity=0.281 Sum_probs=59.4
Q ss_pred CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEE-ecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKT-VEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e-~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
+-.|..+.|=|...++|+.|+ ..|.|.||+++.++...+.. ..+..+|.|..|-. .....||+|+.||.+.||
T Consensus 119 ~~~V~~l~~~P~~~~~lasGs---~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p--~~~~~l~s~s~D~~v~iw 192 (435)
T 4e54_B 119 DRRATSLAWHPTHPSTVAVGS---KGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNP--LNTNQFYASSMEGTTRLQ 192 (435)
T ss_dssp SSCEEEEEECSSCTTCEEEEE---TTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECS--SCTTEEEEECSSSCEEEE
T ss_pred CCCEEEEEEeCCCCCEEEEEe---CCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeC--CCCCEEEEEeCCCEEEEe
Confidence 345788999999889999985 47999999998887665554 45888999999943 235689999999999998
No 22
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=97.84 E-value=3.9e-05 Score=56.42 Aligned_cols=82 Identities=12% Similarity=0.230 Sum_probs=61.3
Q ss_pred ceehhhhhcCCcceeeeeeecCCccEEEEccccCCcccEEEEEecC---Cc-eeEEEEecccCceeeeecCCCCCCCceE
Q psy9278 11 QIICLVEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEIND---GQ-PELVKTVEKPNAFKCGTFNASPLSERYL 86 (98)
Q Consensus 11 QIIehi~ksl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~---~~-l~~~~e~e~~~~~KC~TFgaSsl~~r~l 86 (98)
+++.++.+...-.+..+.|-|...++++.|+ ..|.|+||+++. +. ++......+..++.|..|-. ..+.|
T Consensus 53 ~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s---~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~l 126 (437)
T 3gre_A 53 KLIATLMENEPNSITSSAVSPGETPYLITGS---DQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIP---NFDAF 126 (437)
T ss_dssp CEEEEECTTTTSCEEEEEEECSSSCEEEEEE---TTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECT---TSSEE
T ss_pred eEEeeeccCCCCceEEEEECCCCCCEEEEec---CCceEEEeECcccccCcccceeeeccCCCCEEEEEEeC---CCCEE
Confidence 4455554556678999999994444455553 679999999977 54 33445556889999999964 35689
Q ss_pred EEeecCceEEeC
Q psy9278 87 ATGDFEGKLQIW 98 (98)
Q Consensus 87 AtGdf~G~L~iw 98 (98)
|+|+.||.+.||
T Consensus 127 ~s~s~dg~i~vw 138 (437)
T 3gre_A 127 AVSSKDGQIIVL 138 (437)
T ss_dssp EEEETTSEEEEE
T ss_pred EEEeCCCEEEEE
Confidence 999999999998
No 23
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=97.83 E-value=3e-05 Score=57.38 Aligned_cols=69 Identities=17% Similarity=0.361 Sum_probs=48.1
Q ss_pred cceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEE---EEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 22 YQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELV---KTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 22 yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~---~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
.-+.++.|.|.. ++++.+ ..|.|+||++..++...+ ...++..++.|..|-+. .+.||+|+.||.+.||
T Consensus 95 ~~V~~~~~s~d~-~~l~~s----~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spd---g~~l~sgs~dg~v~iw 166 (357)
T 4g56_B 95 AGVTDVAWVSEK-GILVAS----DSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSD---GTQAVSGGKDFSVKVW 166 (357)
T ss_dssp SCEEEEEEETTT-EEEEEE----TTSCEEEC--------CCCCEEECCCSSCEEEEEECSS---SSEEEEEETTSCEEEE
T ss_pred CCEEEEEEcCCC-CEEEEE----CCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCC---CCEEEEEeCCCeEEEE
Confidence 458999999985 566544 468999999988865443 33457889999999543 4789999999999998
No 24
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=97.81 E-value=0.00013 Score=52.25 Aligned_cols=72 Identities=10% Similarity=0.183 Sum_probs=55.1
Q ss_pred CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
.-.+.++.|-|....+++-+ ..|.|+||++..+......-..+...+.|..|-+. ..+.||+|+.||.+.||
T Consensus 97 ~~~v~~~~~~~~~~~l~sgs----~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~--~~~~l~sgs~D~~v~iw 168 (304)
T 2ynn_A 97 PDYIRSIAVHPTKPYVLSGS----DDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPK--DPSTFASGCLDRTVKVW 168 (304)
T ss_dssp SSCEEEEEECSSSSEEEEEE----TTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTT--CTTEEEEEETTSEEEEE
T ss_pred CCcEEEEEEcCCCCEEEEEC----CCCeEEEEECCCCcchhhhhcccCCcEEEEEECCC--CCCEEEEEeCCCeEEEE
Confidence 34588999999987766555 67999999998774332223347788999999553 25689999999999998
No 25
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=97.80 E-value=6.9e-05 Score=52.45 Aligned_cols=72 Identities=11% Similarity=0.146 Sum_probs=57.1
Q ss_pred cCCcceeeeeeecCCc-cEEEEccccCCcccEEEEEe-cCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEE
Q psy9278 19 SLDYQLFDCKWMPCSA-KFIVLGMKPKGTGSIQMYEI-NDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQ 96 (98)
Q Consensus 19 sl~yT~fD~kWIP~SA-rfV~lG~~prgtG~iqIyeL-~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~ 96 (98)
...-.+..+.|-|... .+++.+ ..|.|.+|++ +.+++..+....+..++.|..|-. .+.|++|+.||.+.
T Consensus 54 ~~~~~v~~~~~~~~~~~~l~~~~----~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~----~~~l~s~~~d~~i~ 125 (342)
T 1yfq_A 54 RYKHPLLCCNFIDNTDLQIYVGT----VQGEILKVDLIGSPSFQALTNNEANLGICRICKYG----DDKLIAASWDGLIE 125 (342)
T ss_dssp ECSSCEEEEEEEESSSEEEEEEE----TTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEET----TTEEEEEETTSEEE
T ss_pred ecCCceEEEEECCCCCcEEEEEc----CCCeEEEEEeccCCceEeccccCCCCceEEEEeCC----CCEEEEEcCCCeEE
Confidence 4566789999999966 455444 5789999999 888875554333778899999955 57899999999999
Q ss_pred eC
Q psy9278 97 IW 98 (98)
Q Consensus 97 iw 98 (98)
+|
T Consensus 126 iw 127 (342)
T 1yfq_A 126 VI 127 (342)
T ss_dssp EE
T ss_pred EE
Confidence 98
No 26
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=97.80 E-value=0.0001 Score=51.56 Aligned_cols=79 Identities=14% Similarity=0.236 Sum_probs=58.3
Q ss_pred hhhcCCcceeeeeeecC----CccEEEEccccCCcccEEEEEecCC-ceeEEEEec---ccCceeeeecCCCCCC-CceE
Q psy9278 16 VEKSLDYQLFDCKWMPC----SAKFIVLGMKPKGTGSIQMYEINDG-QPELVKTVE---KPNAFKCGTFNASPLS-ERYL 86 (98)
Q Consensus 16 i~ksl~yT~fD~kWIP~----SArfV~lG~~prgtG~iqIyeL~~~-~l~~~~e~e---~~~~~KC~TFgaSsl~-~r~l 86 (98)
+.+..+-.++.++|-|. ...+++.+ +.|.|.||+++.+ .+..+.... +...+.|..|-..... .+.|
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~----~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l 88 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATV----GSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLL 88 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEE----ETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEEC----CCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEE
Confidence 33455678999999995 44455555 4568999999855 455665554 4578999999666433 5789
Q ss_pred EEeecCceEEeC
Q psy9278 87 ATGDFEGKLQIW 98 (98)
Q Consensus 87 AtGdf~G~L~iw 98 (98)
|+|+.||.+.||
T Consensus 89 ~~~~~dg~i~v~ 100 (366)
T 3k26_A 89 AVAGSRGIIRII 100 (366)
T ss_dssp EEEETTCEEEEE
T ss_pred EEecCCCEEEEE
Confidence 999999999998
No 27
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=97.80 E-value=0.00018 Score=50.77 Aligned_cols=72 Identities=15% Similarity=0.261 Sum_probs=58.0
Q ss_pred CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEE-ecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKT-VEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e-~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
....+.++.|-|....+++.+ ..|.|.||+++.+++..... ..+...+.|..|-.. .+.||+|+.+|.+.+|
T Consensus 51 h~~~v~~~~~~~~~~~l~~~~----~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~v~i~ 123 (372)
T 1k8k_C 51 HNGQVTGVDWAPDSNRIVTCG----TDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPN---EKKFAVGSGSRVISIC 123 (372)
T ss_dssp CSSCEEEEEEETTTTEEEEEE----TTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTT---SSEEEEEETTSSEEEE
T ss_pred CCCcccEEEEeCCCCEEEEEc----CCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCC---CCEEEEEeCCCEEEEE
Confidence 456789999999776666554 57899999999998665554 457889999999654 4799999999999987
No 28
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=97.78 E-value=0.00022 Score=50.59 Aligned_cols=74 Identities=12% Similarity=0.180 Sum_probs=59.4
Q ss_pred CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
....+.++.|.|...++++.|. ..|.|+||+++.++... ..+.+..+.|..|-..+.....||+|+.+|.+.+|
T Consensus 98 ~~~~v~~~~~~~~~~~~l~s~~---~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 171 (408)
T 4a11_B 98 HRYSVETVQWYPHDTGMFTSSS---FDKTLKVWDTNTLQTAD--VFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLC 171 (408)
T ss_dssp CSSCEEEEEECTTCTTCEEEEE---TTSEEEEEETTTTEEEE--EEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEE
T ss_pred CCCcEEEEEEccCCCcEEEEEe---CCCeEEEeeCCCCccce--eccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEE
Confidence 5678999999996655555552 47899999999876544 44577888999998887777899999999999998
No 29
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=97.77 E-value=3.9e-05 Score=55.04 Aligned_cols=78 Identities=15% Similarity=0.187 Sum_probs=57.9
Q ss_pred hhhhcCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCc----eeEEEEe-cccCceeeeecCCC----CCCCce
Q psy9278 15 LVEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQ----PELVKTV-EKPNAFKCGTFNAS----PLSERY 85 (98)
Q Consensus 15 hi~ksl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~----l~~~~e~-e~~~~~KC~TFgaS----sl~~r~ 85 (98)
++-+..+-.++.+.|-| ++++.|+ ..|.|.||+++.++ .+++..+ .+..++.|..|-.. ....+.
T Consensus 10 ~~~~~h~~~i~~~~~~~---~~l~s~~---~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~ 83 (397)
T 1sq9_A 10 NAGKAHDADIFSVSACN---SFTVSCS---GDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCL 83 (397)
T ss_dssp EESSCSSSCEEEEEECS---SEEEEEE---TTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred hhhhhhhcCeEEEEecC---CeEEEEc---CCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccE
Confidence 33345567899999988 5666664 47999999999988 3333333 47788999999654 111279
Q ss_pred EEEeecCceEEeC
Q psy9278 86 LATGDFEGKLQIW 98 (98)
Q Consensus 86 lAtGdf~G~L~iw 98 (98)
||+|+.||.+.||
T Consensus 84 l~s~~~dg~i~iw 96 (397)
T 1sq9_A 84 VATTSFSGDLLFY 96 (397)
T ss_dssp EEEEETTSCEEEE
T ss_pred EEEEcCCCCEEEE
Confidence 9999999999998
No 30
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=97.76 E-value=8.2e-05 Score=53.29 Aligned_cols=72 Identities=14% Similarity=0.146 Sum_probs=52.7
Q ss_pred CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCc-eeEEEEe-cccCceeeeecCCCCCCCceEEEeecCceEEe
Q psy9278 20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQ-PELVKTV-EKPNAFKCGTFNASPLSERYLATGDFEGKLQI 97 (98)
Q Consensus 20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~-l~~~~e~-e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~i 97 (98)
....+.++.|-|....+++.+ ..|.|+||+++.++ ++.+... .+..++.|..|-.. .+.||+|+.||.+.|
T Consensus 54 h~~~v~~~~~s~~~~~l~s~s----~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~i 126 (377)
T 3dwl_C 54 HDKIVTCVDWAPKSNRIVTCS----QDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPN---EDKFAVGSGARVISV 126 (377)
T ss_dssp CSSCEEEEEECTTTCCEEEEE----TTSSEEEC------CCCCEEECCCCSSCEEEEECCTT---SSCCEEEESSSCEEE
T ss_pred CCceEEEEEEeCCCCEEEEEe----CCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCC---CCEEEEEecCCeEEE
Confidence 456789999999987777665 57899999999887 4444433 47889999999664 568999999999999
Q ss_pred C
Q psy9278 98 W 98 (98)
Q Consensus 98 w 98 (98)
|
T Consensus 127 w 127 (377)
T 3dwl_C 127 C 127 (377)
T ss_dssp C
T ss_pred E
Confidence 8
No 31
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=97.76 E-value=0.00011 Score=54.86 Aligned_cols=71 Identities=13% Similarity=0.153 Sum_probs=57.7
Q ss_pred CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
...+..+.|-|...++++.|+ ..|.|+||+++.+++. ....+...+.|..|- ....+-||+|+.||.+.+|
T Consensus 257 ~~~v~~v~fsp~g~~~lasgs---~D~~i~vwd~~~~~~~--~~~~H~~~V~~v~~s--p~~~~llas~s~D~~v~~w 327 (344)
T 4gqb_B 257 SQCVTGLVFSPHSVPFLASLS---EDCSLAVLDSSLSELF--RSQAHRDFVRDATWS--PLNHSLLTTVGWDHQVVHH 327 (344)
T ss_dssp SSCEEEEEECSSSSCCEEEEE---TTSCEEEECTTCCEEE--EECCCSSCEEEEEEC--SSSTTEEEEEETTSCEEEE
T ss_pred CCCEEEEEEccCCCeEEEEEe---CCCeEEEEECCCCcEE--EEcCCCCCEEEEEEe--CCCCeEEEEEcCCCeEEEE
Confidence 456889999999999888775 4689999999988754 445588899999993 3345678999999999998
No 32
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=97.76 E-value=0.00016 Score=50.54 Aligned_cols=74 Identities=11% Similarity=0.318 Sum_probs=57.8
Q ss_pred cCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCc-----------------eeEEEEec-ccCceeeeecCCCC
Q psy9278 19 SLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQ-----------------PELVKTVE-KPNAFKCGTFNASP 80 (98)
Q Consensus 19 sl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~-----------------l~~~~e~e-~~~~~KC~TFgaSs 80 (98)
.....+..+.|-|....+++.|. ..|.|.||+++.++ ++++.+.+ +..++.|..|-..
T Consensus 257 ~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~- 332 (357)
T 3i2n_A 257 AHKSTVWQVRHLPQNRELFLTAG---GAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPD- 332 (357)
T ss_dssp CCSSCEEEEEEETTEEEEEEEEE---TTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSS-
T ss_pred CCcCCEEEEEECCCCCcEEEEEe---CCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCC-
Confidence 34667899999999886666663 47899999998653 35666665 7788999999654
Q ss_pred CCCceEE-EeecCceEEeC
Q psy9278 81 LSERYLA-TGDFEGKLQIW 98 (98)
Q Consensus 81 l~~r~lA-tGdf~G~L~iw 98 (98)
.+.|| +|+.||.+.||
T Consensus 333 --~~~l~~s~~~d~~i~iw 349 (357)
T 3i2n_A 333 --KRGLCVCSSFDQTVRVL 349 (357)
T ss_dssp --STTEEEEEETTSEEEEE
T ss_pred --CCeEEEEecCCCcEEEE
Confidence 46787 89999999998
No 33
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=97.74 E-value=0.00025 Score=48.88 Aligned_cols=72 Identities=13% Similarity=0.200 Sum_probs=56.5
Q ss_pred CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
....+..+.|.|....+++.+.. ..|.|.||++..++ ++.+++ +..++.|..|-+. .+.||||+.||.+.||
T Consensus 239 ~~~~v~~~~~~~~~~~~~~~sg~--~d~~i~iwd~~~~~--~~~~l~gH~~~V~~l~~spd---g~~l~S~s~D~~v~iW 311 (318)
T 4ggc_A 239 AHSQVCSILWSPHYKELISGHGF--AQNQLVIWKYPTMA--KVAELKGHTSRVLSLTMSPD---GATVASAAADETLRLW 311 (318)
T ss_dssp CSSCEEEEEEETTTTEEEEEECT--TTCCEEEEETTTCC--EEEEECCCSSCEEEEEECTT---SSCEEEEETTTEEEEE
T ss_pred ceeeeeeeeecccccceEEEEEc--CCCEEEEEECCCCc--EEEEEcCCCCCEEEEEEcCC---CCEEEEEecCCeEEEE
Confidence 34456788899999888876422 36889999998775 456666 7889999999543 4689999999999999
No 34
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=97.73 E-value=0.0003 Score=48.02 Aligned_cols=76 Identities=14% Similarity=0.229 Sum_probs=57.2
Q ss_pred cCCcceeeeeeecCC-ccEEEEccccCCcccEEEEEecCCce-------eEEEEec-ccCceeeeecCCCCCCCceEEEe
Q psy9278 19 SLDYQLFDCKWMPCS-AKFIVLGMKPKGTGSIQMYEINDGQP-------ELVKTVE-KPNAFKCGTFNASPLSERYLATG 89 (98)
Q Consensus 19 sl~yT~fD~kWIP~S-ArfV~lG~~prgtG~iqIyeL~~~~l-------~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtG 89 (98)
.....+..+.|-|.. .++++.|. ..|.|.||+++.++. +.+...+ +..++.|..|-... ..+.||+|
T Consensus 55 ~~~~~v~~~~~~~~~d~~~l~s~~---~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~ 130 (351)
T 3f3f_A 55 AHDSSIVAIDWASPEYGRIIASAS---YDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAH-LGLKLACL 130 (351)
T ss_dssp CCSSCEEEEEECCGGGCSEEEEEE---TTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGG-GCSEEEEE
T ss_pred cCCCcEEEEEEcCCCCCCEEEEEc---CCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCC-CCcEEEEe
Confidence 456678999999962 55555553 378999999988753 5566554 77889999995541 14689999
Q ss_pred ecCceEEeC
Q psy9278 90 DFEGKLQIW 98 (98)
Q Consensus 90 df~G~L~iw 98 (98)
+-||.+.||
T Consensus 131 ~~dg~v~iw 139 (351)
T 3f3f_A 131 GNDGILRLY 139 (351)
T ss_dssp ETTCEEEEE
T ss_pred cCCCcEEEe
Confidence 999999998
No 35
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=97.73 E-value=0.00025 Score=49.92 Aligned_cols=70 Identities=20% Similarity=0.514 Sum_probs=55.5
Q ss_pred CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
....+.++.|-|....+++.+ ..|.|+||+++.++.. ..++ +...+.|..|-.. .+.||+|+.||.+.||
T Consensus 64 h~~~v~~~~~~~~~~~l~s~~----~d~~i~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~---~~~l~s~~~d~~i~iw 134 (312)
T 4ery_A 64 HKLGISDVAWSSDSNLLVSAS----DDKTLKIWDVSSGKCL--KTLKGHSNYVFCCNFNPQ---SNLIVSGSFDESVRIW 134 (312)
T ss_dssp CSSCEEEEEECTTSSEEEEEE----TTSEEEEEETTTCCEE--EEEECCSSCEEEEEECSS---SSEEEEEETTSCEEEE
T ss_pred CCCceEEEEEcCCCCEEEEEC----CCCEEEEEECCCCcEE--EEEcCCCCCEEEEEEcCC---CCEEEEEeCCCcEEEE
Confidence 456688999999887776665 5789999999888643 3333 6778999999654 4689999999999998
No 36
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=97.72 E-value=0.00025 Score=51.69 Aligned_cols=72 Identities=15% Similarity=0.266 Sum_probs=59.0
Q ss_pred CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
..-.+..+.|-|....+++-+ ..|.|+||++..++...+..++ +...+.|..|-.. .+.||+|+-||.+.||
T Consensus 149 h~~~v~~~~~~p~~~~l~s~s----~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~---g~~l~s~s~D~~v~iW 221 (345)
T 3fm0_A 149 HTQDVKHVVWHPSQELLASAS----YDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPS---GQRLASCSDDRTVRIW 221 (345)
T ss_dssp CCSCEEEEEECSSSSCEEEEE----TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTT---SSEEEEEETTSCEEEE
T ss_pred cCCCeEEEEECCCCCEEEEEe----CCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCC---CCEEEEEeCCCeEEEe
Confidence 345678899999887666554 5789999999999887777666 7788999999654 4789999999999998
No 37
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=97.72 E-value=0.00032 Score=48.40 Aligned_cols=72 Identities=15% Similarity=0.363 Sum_probs=56.1
Q ss_pred CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
....+..+.|-|....+++.+ ..|.|.+|+++.++...+.... +...+.|..|-.. .+.|++|+.+|.+.+|
T Consensus 96 ~~~~v~~~~~~~~~~~l~~~~----~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~v~~~ 168 (337)
T 1gxr_A 96 RDNYIRSCKLLPDGCTLIVGG----EASTLSIWDLAAPTPRIKAELTSSAPACYALAISPD---SKVCFSCCSDGNIAVW 168 (337)
T ss_dssp TTSBEEEEEECTTSSEEEEEE----SSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTT---SSEEEEEETTSCEEEE
T ss_pred CCCcEEEEEEcCCCCEEEEEc----CCCcEEEEECCCCCcceeeecccCCCceEEEEECCC---CCEEEEEeCCCcEEEE
Confidence 456688999999876666554 4689999999999876666555 6677899988653 5789999999999998
No 38
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=97.71 E-value=0.00012 Score=51.49 Aligned_cols=72 Identities=17% Similarity=0.309 Sum_probs=54.9
Q ss_pred CCcceeeeeeecC---CccEEEEccccCCcccEEEEEecCCc----eeEEEEecccCceeeeecCCCCCCCceEEEeecC
Q psy9278 20 LDYQLFDCKWMPC---SAKFIVLGMKPKGTGSIQMYEINDGQ----PELVKTVEKPNAFKCGTFNASPLSERYLATGDFE 92 (98)
Q Consensus 20 l~yT~fD~kWIP~---SArfV~lG~~prgtG~iqIyeL~~~~----l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~ 92 (98)
....+.++.|-|. ...+++.+ ..|.|.||+++.++ ..+......+..+.|..|-.. .+.||+|+-|
T Consensus 205 h~~~v~~~~~sp~~~~~~~l~s~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---g~~l~~~~~d 277 (379)
T 3jrp_A 205 HSDWVRDVAWSPTVLLRSYLASVS----QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLS---GNVLALSGGD 277 (379)
T ss_dssp CSSCEEEEEECCCCSSSEEEEEEE----TTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSS---SCCEEEEESS
T ss_pred ccCcEeEEEECCCCCCCCeEEEEe----CCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCC---CCEEEEecCC
Confidence 3556889999999 45555444 57899999999884 344444447788999999554 4689999999
Q ss_pred ceEEeC
Q psy9278 93 GKLQIW 98 (98)
Q Consensus 93 G~L~iw 98 (98)
|.+.||
T Consensus 278 g~i~iw 283 (379)
T 3jrp_A 278 NKVTLW 283 (379)
T ss_dssp SSEEEE
T ss_pred CcEEEE
Confidence 999998
No 39
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=97.71 E-value=0.00023 Score=51.63 Aligned_cols=69 Identities=14% Similarity=0.397 Sum_probs=55.1
Q ss_pred CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec---ccCceeeeecCCCCCCCceEEEeecCceEEe
Q psy9278 21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE---KPNAFKCGTFNASPLSERYLATGDFEGKLQI 97 (98)
Q Consensus 21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e---~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~i 97 (98)
.-.++.+.|-|. +++.|+ ..|.|+||+++.++.+++..++ +..++.|..|-+. .+.||+|+.||.+.|
T Consensus 14 ~~~v~~~~~s~~---~las~~---~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~---~~~las~s~D~~v~i 84 (330)
T 2hes_X 14 KEKIWSFDFSQG---ILATGS---TDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPH---TSLLAAGSFDSTVSI 84 (330)
T ss_dssp SSCEEEEEEETT---EEEEEE---SSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTT---SSEEEEEETTSCEEE
T ss_pred CCceeeeccCCC---EEEEEc---CCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCC---CCEEEEEeCCCcEEE
Confidence 456788889887 455552 5799999999988777777662 6778999999654 468999999999999
Q ss_pred C
Q psy9278 98 W 98 (98)
Q Consensus 98 w 98 (98)
|
T Consensus 85 w 85 (330)
T 2hes_X 85 W 85 (330)
T ss_dssp E
T ss_pred E
Confidence 8
No 40
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=97.71 E-value=0.00011 Score=53.98 Aligned_cols=73 Identities=21% Similarity=0.424 Sum_probs=56.8
Q ss_pred CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCce-----eEEEEec-ccCceeeeecCCCCCCCceEEEeecCce
Q psy9278 21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQP-----ELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGK 94 (98)
Q Consensus 21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l-----~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~ 94 (98)
.-.+.++.|-|...++++.|+ ..|.|.||+++.+++ +.+..++ +...+.|..|-... ++.||+|+.||.
T Consensus 81 ~~~V~~~~~~p~~~~~l~s~s---~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~--~~~l~s~~~dg~ 155 (402)
T 2aq5_A 81 TAPVLDIAWCPHNDNVIASGS---EDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTA--QNVLLSAGCDNV 155 (402)
T ss_dssp SSCEEEEEECTTCTTEEEEEE---TTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSB--TTEEEEEETTSC
T ss_pred CCCEEEEEeCCCCCCEEEEEe---CCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCC--CCEEEEEcCCCE
Confidence 457899999995556666664 468999999998864 3444444 78899999995542 468999999999
Q ss_pred EEeC
Q psy9278 95 LQIW 98 (98)
Q Consensus 95 L~iw 98 (98)
+.||
T Consensus 156 i~iw 159 (402)
T 2aq5_A 156 ILVW 159 (402)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9998
No 41
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=97.70 E-value=0.00025 Score=51.39 Aligned_cols=71 Identities=15% Similarity=0.363 Sum_probs=55.0
Q ss_pred CcceeeeeeecCCccEEEEccccCCcccEEEEEecCC--ceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEe
Q psy9278 21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDG--QPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQI 97 (98)
Q Consensus 21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~--~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~i 97 (98)
.-.+.++.|-|....+++.+ ..|.|+||+++.+ ..+++..++ +...+.|..|-.. .+.||+|+.||.+.|
T Consensus 107 ~~~V~~v~~sp~g~~las~s----~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~---~~~l~s~s~D~~i~i 179 (330)
T 2hes_X 107 ENEVKGVAWSNDGYYLATCS----RDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPS---EALLASSSYDDTVRI 179 (330)
T ss_dssp --CEEEEEECTTSCEEEEEE----TTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSS---SSEEEEEETTSCEEE
T ss_pred CCcEEEEEECCCCCEEEEEe----CCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCC---CCEEEEEcCCCeEEE
Confidence 45688999999877666555 5789999999533 456666554 7788999999654 468999999999999
Q ss_pred C
Q psy9278 98 W 98 (98)
Q Consensus 98 w 98 (98)
|
T Consensus 180 W 180 (330)
T 2hes_X 180 W 180 (330)
T ss_dssp E
T ss_pred E
Confidence 8
No 42
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=97.69 E-value=8e-05 Score=53.54 Aligned_cols=75 Identities=13% Similarity=0.300 Sum_probs=59.4
Q ss_pred CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEe--cccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTV--EKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~--e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
...+.++.|-|...++++.|..-.+.|.|.||++..++. .+... .+..++.|..|-.. ..+.||+|+.||.+.||
T Consensus 214 ~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~-~~~~~~~~~~~~v~~~~~s~~--~~~~l~s~~~dg~v~~w 290 (416)
T 2pm9_A 214 KQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANT-PLQTLNQGHQKGILSLDWCHQ--DEHLLLSSGRDNTVLLW 290 (416)
T ss_dssp CCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTS-CSBCCCSCCSSCEEEEEECSS--CSSCEEEEESSSEEEEE
T ss_pred CCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCC-CcEEeecCccCceeEEEeCCC--CCCeEEEEeCCCCEEEe
Confidence 567899999999988888887666667999999988642 22233 47788999998542 35789999999999998
No 43
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=97.69 E-value=0.00031 Score=52.21 Aligned_cols=85 Identities=8% Similarity=0.127 Sum_probs=61.5
Q ss_pred ceehhhhhcCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEE--Ee-cccCceeeeecCCCCCCCceEE
Q psy9278 11 QIICLVEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVK--TV-EKPNAFKCGTFNASPLSERYLA 87 (98)
Q Consensus 11 QIIehi~ksl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~--e~-e~~~~~KC~TFgaSsl~~r~lA 87 (98)
++........+..+..++|-|....+++.+..-.....+.+|++..+...... .+ .+..++.|..|-. ..+.||
T Consensus 209 ~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Sp---dg~~la 285 (365)
T 4h5i_A 209 CIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDM---KGELAV 285 (365)
T ss_dssp EEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECT---TSCEEE
T ss_pred ceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECC---CCCceE
Confidence 33333444456788999999998877766544344457899999888655443 33 3677899999944 357999
Q ss_pred EeecCceEEeC
Q psy9278 88 TGDFEGKLQIW 98 (98)
Q Consensus 88 tGdf~G~L~iw 98 (98)
+|+.||.+.||
T Consensus 286 sgs~D~~V~iw 296 (365)
T 4h5i_A 286 LASNDNSIALV 296 (365)
T ss_dssp EEETTSCEEEE
T ss_pred EEcCCCEEEEE
Confidence 99999999998
No 44
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=97.66 E-value=0.00021 Score=51.59 Aligned_cols=75 Identities=8% Similarity=0.215 Sum_probs=58.5
Q ss_pred hcCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCcee---EEEEec-ccCceeeeecCCCCCCCceEEEeecCc
Q psy9278 18 KSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPE---LVKTVE-KPNAFKCGTFNASPLSERYLATGDFEG 93 (98)
Q Consensus 18 ksl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~---~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G 93 (98)
+...-.+..+.|-|...++++.|+ ..|.|.+|+++.++.+ .+...+ +..++.|..|-+. .+.||+|+.||
T Consensus 14 ~gH~~~V~~l~~~~~~~~~l~s~s---~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~d---g~~l~s~s~D~ 87 (319)
T 3frx_A 14 EGHNGWVTSLATSAGQPNLLLSAS---RDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTAD---GAYALSASWDK 87 (319)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEE---TTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTT---SSEEEEEETTS
T ss_pred ccccceEEEEEccCCCccEEEEec---CCccEEEecCCCCCccccccceEEeCCcccEEEEEECCC---CCEEEEEeCCC
Confidence 445667899999998877777764 5789999999765433 244444 7889999999654 57999999999
Q ss_pred eEEeC
Q psy9278 94 KLQIW 98 (98)
Q Consensus 94 ~L~iw 98 (98)
.+.||
T Consensus 88 ~v~~w 92 (319)
T 3frx_A 88 TLRLW 92 (319)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99998
No 45
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=97.66 E-value=0.00026 Score=49.82 Aligned_cols=73 Identities=14% Similarity=0.192 Sum_probs=57.3
Q ss_pred hcCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEe
Q psy9278 18 KSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQI 97 (98)
Q Consensus 18 ksl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~i 97 (98)
+..+-.+..+.|-|....+++.+ ..|.|+||++..+++...- ..+..++.|..|-.. .+.||+|+-||.+.|
T Consensus 20 ~gh~~~v~~~~~s~~~~~l~s~~----~dg~i~iw~~~~~~~~~~~-~~h~~~v~~~~~~~~---~~~l~s~~~d~~i~v 91 (312)
T 4ery_A 20 AGHTKAVSSVKFSPNGEWLASSS----ADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSD---SNLLVSASDDKTLKI 91 (312)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEE----TTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTT---SSEEEEEETTSEEEE
T ss_pred cccCCcEEEEEECCCCCEEEEee----CCCeEEEEeCCCcccchhh-ccCCCceEEEEEcCC---CCEEEEECCCCEEEE
Confidence 34456789999999887766655 6789999999888754332 236778999999654 479999999999999
Q ss_pred C
Q psy9278 98 W 98 (98)
Q Consensus 98 w 98 (98)
|
T Consensus 92 w 92 (312)
T 4ery_A 92 W 92 (312)
T ss_dssp E
T ss_pred E
Confidence 8
No 46
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=97.66 E-value=0.00041 Score=48.31 Aligned_cols=75 Identities=12% Similarity=0.281 Sum_probs=58.2
Q ss_pred hcCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCcee---EEEEec-ccCceeeeecCCCCCCCceEEEeecCc
Q psy9278 18 KSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPE---LVKTVE-KPNAFKCGTFNASPLSERYLATGDFEG 93 (98)
Q Consensus 18 ksl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~---~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G 93 (98)
+..+-.|.++.|-|...++++-|+ ..|.|.||+++.++.. .+..++ +..++.|..|-+. .+.||+|+.||
T Consensus 35 ~GH~~~V~~v~~sp~~~~~l~S~s---~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~d---g~~l~s~~~d~ 108 (340)
T 4aow_A 35 KGHNGWVTQIATTPQFPDMILSAS---RDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSD---GQFALSGSWDG 108 (340)
T ss_dssp CCCSSCEEEEEECTTCTTEEEEEE---TTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTT---SSEEEEEETTS
T ss_pred CCccCCEEEEEEeCCCCCEEEEEc---CCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCC---CCEEEEEcccc
Confidence 345667899999999888887775 4689999999887532 333333 6789999999553 57899999999
Q ss_pred eEEeC
Q psy9278 94 KLQIW 98 (98)
Q Consensus 94 ~L~iw 98 (98)
.+.+|
T Consensus 109 ~i~~~ 113 (340)
T 4aow_A 109 TLRLW 113 (340)
T ss_dssp EEEEE
T ss_pred cceEE
Confidence 99887
No 47
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=97.66 E-value=0.00034 Score=48.31 Aligned_cols=70 Identities=13% Similarity=0.284 Sum_probs=56.7
Q ss_pred CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
....+.++.|-|....+++.+ ..|.|.||+++.++.. ....+..++.+..|-.. .+.||+|+-||.+.||
T Consensus 264 ~~~~v~~~~~~~~~~~l~~~~----~dg~i~~~~~~~~~~~--~~~~~~~~v~~~~~s~~---~~~l~~~~~dg~i~iw 333 (337)
T 1gxr_A 264 HESCVLSLKFAYCGKWFVSTG----KDNLLNAWRTPYGASI--FQSKESSSVLSCDISVD---DKYIVTGSGDKKATVY 333 (337)
T ss_dssp CSSCEEEEEECTTSSEEEEEE----TTSEEEEEETTTCCEE--EEEECSSCEEEEEECTT---SCEEEEEETTSCEEEE
T ss_pred CccceeEEEECCCCCEEEEec----CCCcEEEEECCCCeEE--EEecCCCcEEEEEECCC---CCEEEEecCCCeEEEE
Confidence 345688999999887776665 4789999999988765 44557788999988654 4789999999999998
No 48
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=97.66 E-value=0.0002 Score=52.50 Aligned_cols=72 Identities=10% Similarity=0.206 Sum_probs=56.8
Q ss_pred CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEE-ecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKT-VEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e-~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
.-.+..+.|-|...++++.|+ ..|.|.||+++.++....-. ..++..+.|..|-.. .+.||+|+.||.+.||
T Consensus 131 ~~~v~~~~~~p~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~iw 203 (402)
T 2aq5_A 131 TKRVGIVAWHPTAQNVLLSAG---CDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRD---GALICTSCRDKRVRVI 203 (402)
T ss_dssp SSCEEEEEECSSBTTEEEEEE---TTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTT---SSCEEEEETTSEEEEE
T ss_pred CCeEEEEEECcCCCCEEEEEc---CCCEEEEEECCCCCccEEEecCCCCCceEEEEECCC---CCEEEEEecCCcEEEE
Confidence 456889999999876666664 46899999999886543332 347889999999653 5689999999999998
No 49
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=97.65 E-value=0.00022 Score=52.59 Aligned_cols=69 Identities=14% Similarity=0.258 Sum_probs=53.3
Q ss_pred CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
.+..+.++.|-|....+++.+ ..|.|+||+++.++....-. .+...+.|..| ..+.|++|+.||.+.+|
T Consensus 133 ~~~~v~~v~~s~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~-----~~~~l~~~~~dg~i~i~ 201 (401)
T 4aez_A 133 ESTYVASVKWSHDGSFLSVGL----GNGLVDIYDVESQTKLRTMA-GHQARVGCLSW-----NRHVLSSGSRSGAIHHH 201 (401)
T ss_dssp TTCCEEEEEECTTSSEEEEEE----TTSCEEEEETTTCCEEEEEC-CCSSCEEEEEE-----ETTEEEEEETTSEEEEE
T ss_pred CCCCEEEEEECCCCCEEEEEC----CCCeEEEEECcCCeEEEEec-CCCCceEEEEE-----CCCEEEEEcCCCCEEEE
Confidence 456789999999766555544 47899999998876433222 47888999999 24699999999999998
No 50
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=97.64 E-value=0.00036 Score=49.83 Aligned_cols=69 Identities=16% Similarity=0.322 Sum_probs=55.0
Q ss_pred CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
...+..++|.|....+++-+ ..|.|+||+++.++.. .+++ ++..+.|..|-+. .+.||+|+.||.+.||
T Consensus 55 ~~~v~~~~~~~~~~~l~s~s----~d~~i~vwd~~~~~~~--~~~~~h~~~v~~~~~~~~---~~~l~sgs~D~~v~lW 124 (304)
T 2ynn_A 55 ETPVRAGKFIARKNWIIVGS----DDFRIRVFNYNTGEKV--VDFEAHPDYIRSIAVHPT---KPYVLSGSDDLTVKLW 124 (304)
T ss_dssp SSCEEEEEEEGGGTEEEEEE----TTSEEEEEETTTCCEE--EEEECCSSCEEEEEECSS---SSEEEEEETTSCEEEE
T ss_pred CCcEEEEEEeCCCCEEEEEC----CCCEEEEEECCCCcEE--EEEeCCCCcEEEEEEcCC---CCEEEEECCCCeEEEE
Confidence 45678999999887666554 5799999999988643 3343 7888999999655 4689999999999998
No 51
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=97.63 E-value=0.00026 Score=51.09 Aligned_cols=73 Identities=8% Similarity=0.262 Sum_probs=57.9
Q ss_pred CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCc--eeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQ--PELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~--l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
.-.+.++.|-|....+++.|+ ..|.|.||++..++ -+++...++...+.|..|-.. ..+.||+|+.||.+.||
T Consensus 204 ~~~v~~~~~~~~~~~~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~~l~~~~~d~~i~iw 278 (383)
T 3ei3_B 204 KAKVTHAEFNPRCDWLMATSS---VDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPT--DSTKLLTTDQRNEIRVY 278 (383)
T ss_dssp SSCEEEEEECSSCTTEEEEEE---TTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTT--TSCEEEEEESSSEEEEE
T ss_pred CCcEEEEEECCCCCCEEEEEe---CCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCC--CCCEEEEEcCCCcEEEE
Confidence 456889999999985666653 47899999998754 345666678899999999651 25789999999999998
No 52
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=97.60 E-value=0.00026 Score=52.66 Aligned_cols=68 Identities=16% Similarity=0.151 Sum_probs=52.3
Q ss_pred cceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEe-c-ccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 22 YQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTV-E-KPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 22 yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~-e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
..+..+.|=|... +++.|+ ..|.|+||+++.++ ++..+ + +..++.|..|-+. .+.||+|+.||.++||
T Consensus 270 ~~V~~~~~Spdg~-~lasgs---~D~~V~iwd~~~~~--~~~~~~~gH~~~V~~v~fSpd---g~~laS~S~D~tvrvw 339 (365)
T 4h5i_A 270 KGITSMDVDMKGE-LAVLAS---NDNSIALVKLKDLS--MSKIFKQAHSFAITEVTISPD---STYVASVSAANTIHII 339 (365)
T ss_dssp SCEEEEEECTTSC-EEEEEE---TTSCEEEEETTTTE--EEEEETTSSSSCEEEEEECTT---SCEEEEEETTSEEEEE
T ss_pred CCeEeEEECCCCC-ceEEEc---CCCEEEEEECCCCc--EEEEecCcccCCEEEEEECCC---CCEEEEEeCCCeEEEE
Confidence 3467788888765 555554 47899999998765 44444 2 7889999999443 5799999999999998
No 53
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=97.60 E-value=8.4e-05 Score=55.84 Aligned_cols=84 Identities=12% Similarity=0.208 Sum_probs=59.4
Q ss_pred cceehhhhhcCCcceeeeeeecCCccEEEEccccCCcccEEEEEecC--------CceeEEEEec-ccCceeeeecCCCC
Q psy9278 10 PQIICLVEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEIND--------GQPELVKTVE-KPNAFKCGTFNASP 80 (98)
Q Consensus 10 PQIIehi~ksl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~--------~~l~~~~e~e-~~~~~KC~TFgaSs 80 (98)
|++...........+..++|.|+..++++.|. ..|.|.||+++. ++.+.+..+. +...+.|..|-...
T Consensus 117 ~~~~~~~~~~h~~~v~~l~~~p~~~~~lat~~---~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 193 (430)
T 2xyi_A 117 GKIEIEIKINHEGEVNRARYMPQNACVIATKT---PSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNL 193 (430)
T ss_dssp -CEEEEEEEEESSCCSEEEEETTEEEEEEEEC---SSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTS
T ss_pred CceEEEEEEcCCCcEEEEEECCCCCcEEEEEC---CCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCC
Confidence 33433333344578999999998777777774 468999999986 3344444443 66778888885442
Q ss_pred CCCceEEEeecCceEEeC
Q psy9278 81 LSERYLATGDFEGKLQIW 98 (98)
Q Consensus 81 l~~r~lAtGdf~G~L~iw 98 (98)
...||+|+.||.+.||
T Consensus 194 --~~~l~s~~~dg~i~vw 209 (430)
T 2xyi_A 194 --NGYLLSASDDHTICLW 209 (430)
T ss_dssp --TTEEEEECTTSCEEEE
T ss_pred --CCeEEEEeCCCeEEEE
Confidence 4489999999999998
No 54
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=97.60 E-value=0.00028 Score=50.81 Aligned_cols=76 Identities=9% Similarity=0.154 Sum_probs=57.2
Q ss_pred cCCcceeeeeeecC-CccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEE
Q psy9278 19 SLDYQLFDCKWMPC-SAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQ 96 (98)
Q Consensus 19 sl~yT~fD~kWIP~-SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~ 96 (98)
...-.++++.|-|. ..++++.|+ ..|.|+||+++.++.+.+...+ +..++.|..|-... ....||+|+.||.+.
T Consensus 55 gH~~~V~~v~~~~~~~~~~l~s~s---~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~-~g~~lasgs~D~~i~ 130 (316)
T 3bg1_A 55 GHEGPVWQVAWAHPMYGNILASCS---YDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHD-YGLILACGSSDGAIS 130 (316)
T ss_dssp CCSSCEEEEEECCGGGSSCEEEEE---TTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTT-TCSCEEEECSSSCEE
T ss_pred CCCccEEEEEeCCCCCCCEEEEEE---CCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCC-CCcEEEEEcCCCCEE
Confidence 34567899999864 244444443 5789999999988776666654 77889999996542 135799999999999
Q ss_pred eC
Q psy9278 97 IW 98 (98)
Q Consensus 97 iw 98 (98)
||
T Consensus 131 lw 132 (316)
T 3bg1_A 131 LL 132 (316)
T ss_dssp EE
T ss_pred EE
Confidence 97
No 55
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=97.59 E-value=0.0004 Score=50.08 Aligned_cols=70 Identities=9% Similarity=0.266 Sum_probs=56.0
Q ss_pred CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEe-cccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTV-EKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~-e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
....+.++.|-|....+++.+ ..|.|+||++..++. +.++ .+..++.|..|-.. ...||+|+.||.+.||
T Consensus 64 h~~~v~~~~~s~dg~~l~s~s----~D~~v~~wd~~~~~~--~~~~~~h~~~v~~~~~~~~---~~~l~s~s~D~~i~vw 134 (319)
T 3frx_A 64 HSHIVQDCTLTADGAYALSAS----WDKTLRLWDVATGET--YQRFVGHKSDVMSVDIDKK---ASMIISGSRDKTIKVW 134 (319)
T ss_dssp CSSCEEEEEECTTSSEEEEEE----TTSEEEEEETTTTEE--EEEEECCSSCEEEEEECTT---SCEEEEEETTSCEEEE
T ss_pred CcccEEEEEECCCCCEEEEEe----CCCEEEEEECCCCCe--eEEEccCCCcEEEEEEcCC---CCEEEEEeCCCeEEEE
Confidence 345688999999987777665 679999999998864 3333 37888999999554 4689999999999998
No 56
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=97.59 E-value=0.00024 Score=50.40 Aligned_cols=74 Identities=12% Similarity=0.311 Sum_probs=55.7
Q ss_pred CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEe------------cccCceeeeecCCCCCCCceEE
Q psy9278 20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTV------------EKPNAFKCGTFNASPLSERYLA 87 (98)
Q Consensus 20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~------------e~~~~~KC~TFgaSsl~~r~lA 87 (98)
.+-.+..+.|-|...++++.|. ..|.|.||+++.++....... .+..++.|..|-.. ..+.||
T Consensus 42 h~~~v~~~~~s~~~~~~l~~~~---~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~ 116 (408)
T 4a11_B 42 HGGGINTLDIEPVEGRYMLSGG---SDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPH--DTGMFT 116 (408)
T ss_dssp CSSCEEEEEECTTTCCEEEEEE---TTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTT--CTTCEE
T ss_pred cCCcEEEEEEecCCCCEEEEEc---CCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccC--CCcEEE
Confidence 4568899999994445555553 479999999998865444332 27788999999542 356899
Q ss_pred EeecCceEEeC
Q psy9278 88 TGDFEGKLQIW 98 (98)
Q Consensus 88 tGdf~G~L~iw 98 (98)
+|+.||.+.||
T Consensus 117 s~~~d~~i~iw 127 (408)
T 4a11_B 117 SSSFDKTLKVW 127 (408)
T ss_dssp EEETTSEEEEE
T ss_pred EEeCCCeEEEe
Confidence 99999999998
No 57
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=97.58 E-value=0.00046 Score=50.76 Aligned_cols=71 Identities=15% Similarity=0.417 Sum_probs=56.1
Q ss_pred CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
.-.+..+.|-|...++++.+ +.|.|+||+++.+++ +..++ +...+.|..|..+.. ...||+|+.||.+.+|
T Consensus 154 ~~~v~~~~~~~~~~~l~t~s----~D~~v~lwd~~~~~~--~~~~~~h~~~v~~~~~~~~~~-g~~l~sgs~Dg~v~~w 225 (354)
T 2pbi_B 154 TNYLSACSFTNSDMQILTAS----GDGTCALWDVESGQL--LQSFHGHGADVLCLDLAPSET-GNTFVSGGCDKKAMVW 225 (354)
T ss_dssp SSCEEEEEECSSSSEEEEEE----TTSEEEEEETTTCCE--EEEEECCSSCEEEEEECCCSS-CCEEEEEETTSCEEEE
T ss_pred CCcEEEEEEeCCCCEEEEEe----CCCcEEEEeCCCCeE--EEEEcCCCCCeEEEEEEeCCC-CCEEEEEeCCCeEEEE
Confidence 34578999999988888766 689999999998864 33343 677899998865532 3589999999999998
No 58
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=97.58 E-value=0.00036 Score=51.74 Aligned_cols=70 Identities=14% Similarity=0.517 Sum_probs=55.7
Q ss_pred CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
.-.++++.|-|....+++.+ ..|.|.||++..++.... ++...++.|..|-.. ..+.||+|+.||.+.||
T Consensus 165 ~~~v~~~~~~p~~~~l~s~s----~d~~v~iwd~~~~~~~~~--~~~~~~v~~~~~~~~--~~~~l~~~s~d~~v~iw 234 (393)
T 1erj_A 165 EQDIYSLDYFPSGDKLVSGS----GDRTVRIWDLRTGQCSLT--LSIEDGVTTVAVSPG--DGKYIAAGSLDRAVRVW 234 (393)
T ss_dssp SSCEEEEEECTTSSEEEEEE----TTSEEEEEETTTTEEEEE--EECSSCEEEEEECST--TCCEEEEEETTSCEEEE
T ss_pred CCCEEEEEEcCCCCEEEEec----CCCcEEEEECCCCeeEEE--EEcCCCcEEEEEECC--CCCEEEEEcCCCcEEEE
Confidence 45689999999988877665 579999999998875443 445677888888542 35789999999999998
No 59
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=97.56 E-value=0.00048 Score=47.20 Aligned_cols=70 Identities=11% Similarity=0.108 Sum_probs=55.4
Q ss_pred CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
..-.+.++.| |....+++.+ ..|.|.||+++.+++..... .+...+.|..|-.. .+.||+|+.||.+.+|
T Consensus 17 h~~~v~~~~~-~~~~~l~s~~----~dg~v~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~---~~~l~~~~~dg~i~~~ 86 (313)
T 3odt_A 17 HDQDVRDVVA-VDDSKVASVS----RDGTVRLWSKDDQWLGTVVY-TGQGFLNSVCYDSE---KELLLFGGKDTMINGV 86 (313)
T ss_dssp CSSCEEEEEE-EETTEEEEEE----TTSEEEEEEESSSEEEEEEE-ECSSCEEEEEEETT---TTEEEEEETTSCEEEE
T ss_pred CCCCcEEEEe-cCCCEEEEEE----cCCcEEEEECCCCEEEEEee-cCCccEEEEEECCC---CCEEEEecCCCeEEEE
Confidence 4567889999 8887777665 67999999998876554433 35788999999654 5799999999999987
No 60
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=97.56 E-value=0.00051 Score=49.82 Aligned_cols=73 Identities=14% Similarity=0.244 Sum_probs=54.2
Q ss_pred hcCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEe
Q psy9278 18 KSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQI 97 (98)
Q Consensus 18 ksl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~i 97 (98)
......+..+.|-|....++ .|. ..|.|.||++..++....- ..+..++.|..|-.. .+.||+|+.||.+.|
T Consensus 267 ~~~~~~v~~~~~s~~g~~l~-~g~---~d~~i~vwd~~~~~~~~~~-~~h~~~v~~~~~s~d---g~~l~s~s~D~~i~i 338 (340)
T 1got_B 267 DNIICGITSVSFSKSGRLLL-AGY---DDFNCNVWDALKADRAGVL-AGHDNRVSCLGVTDD---GMAVATGSWDSFLKI 338 (340)
T ss_dssp TTCCSCEEEEEECTTSSEEE-EEE---TTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECTT---SSCEEEEETTSCEEE
T ss_pred CCcccceEEEEECCCCCEEE-EEC---CCCeEEEEEcccCcEeeEe-ecCCCcEEEEEEcCC---CCEEEEEcCCccEEe
Confidence 34455688899999775554 443 5789999999877643221 237789999999543 478999999999999
Q ss_pred C
Q psy9278 98 W 98 (98)
Q Consensus 98 w 98 (98)
|
T Consensus 339 W 339 (340)
T 1got_B 339 W 339 (340)
T ss_dssp E
T ss_pred c
Confidence 8
No 61
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=97.52 E-value=0.00062 Score=48.74 Aligned_cols=72 Identities=21% Similarity=0.459 Sum_probs=55.1
Q ss_pred CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec--------------ccCceeeeecCCCCCCCceE
Q psy9278 21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE--------------KPNAFKCGTFNASPLSERYL 86 (98)
Q Consensus 21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e--------------~~~~~KC~TFgaSsl~~r~l 86 (98)
+..+..+.|-|.. ++++.|..-.+.|.|.||++..++. +.+++ +...+.|..|-.. .+.|
T Consensus 233 ~~~i~~i~~~~~~-~~l~~~~~d~~~g~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l 306 (397)
T 1sq9_A 233 SNSIRSVKFSPQG-SLLAIAHDSNSFGCITLYETEFGER--IGSLSVPTHSSQASLGEFAHSSWVMSLSFNDS---GETL 306 (397)
T ss_dssp CCCEEEEEECSST-TEEEEEEEETTEEEEEEEETTTCCE--EEEECBC--------CCBSBSSCEEEEEECSS---SSEE
T ss_pred CCccceEEECCCC-CEEEEEecCCCCceEEEEECCCCcc--cceeccCcccccccccccccCCcEEEEEECCC---CCEE
Confidence 5678899999985 4555665444559999999988754 33333 6788999999654 4789
Q ss_pred EEeecCceEEeC
Q psy9278 87 ATGDFEGKLQIW 98 (98)
Q Consensus 87 AtGdf~G~L~iw 98 (98)
|+|+-||.|.||
T Consensus 307 ~~~~~dg~i~iw 318 (397)
T 1sq9_A 307 CSAGWDGKLRFW 318 (397)
T ss_dssp EEEETTSEEEEE
T ss_pred EEEeCCCeEEEE
Confidence 999999999998
No 62
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=97.52 E-value=0.00059 Score=47.51 Aligned_cols=71 Identities=13% Similarity=0.236 Sum_probs=55.0
Q ss_pred cCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEe
Q psy9278 19 SLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQI 97 (98)
Q Consensus 19 sl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~i 97 (98)
..+-.+..+.|-|....+++.+ ..|.|.||+++.++. +..++ +..++.|..|-. ..+.||+|+.||.+.|
T Consensus 30 ~h~~~v~~~~~s~~~~~l~~~~----~dg~i~vwd~~~~~~--~~~~~~h~~~v~~~~~~~---~~~~l~s~~~dg~i~i 100 (369)
T 3zwl_B 30 GHERPLTQVKYNKEGDLLFSCS----KDSSASVWYSLNGER--LGTLDGHTGTIWSIDVDC---FTKYCVTGSADYSIKL 100 (369)
T ss_dssp CCSSCEEEEEECTTSCEEEEEE----SSSCEEEEETTTCCE--EEEECCCSSCEEEEEECT---TSSEEEEEETTTEEEE
T ss_pred EeeceEEEEEEcCCCCEEEEEe----CCCEEEEEeCCCchh--hhhhhhcCCcEEEEEEcC---CCCEEEEEeCCCeEEE
Confidence 3456689999999776555544 578999999988764 34444 778899999954 3579999999999999
Q ss_pred C
Q psy9278 98 W 98 (98)
Q Consensus 98 w 98 (98)
|
T Consensus 101 w 101 (369)
T 3zwl_B 101 W 101 (369)
T ss_dssp E
T ss_pred E
Confidence 8
No 63
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=97.51 E-value=0.00037 Score=50.48 Aligned_cols=74 Identities=14% Similarity=0.358 Sum_probs=55.3
Q ss_pred CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEe-cccCceeeeecCCCCC-------CCceEEEeecC
Q psy9278 21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTV-EKPNAFKCGTFNASPL-------SERYLATGDFE 92 (98)
Q Consensus 21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~-e~~~~~KC~TFgaSsl-------~~r~lAtGdf~ 92 (98)
...++++.|-|....+++.| ..|.|+||++.........+. .+...+.|..|-.... ....||+|+.|
T Consensus 118 ~~~v~~v~~sp~~~~l~s~~----~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d 193 (343)
T 2xzm_R 118 QSEVYSVAFSPDNRQILSAG----AEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWD 193 (343)
T ss_dssp CSCEEEEEECSSTTEEEEEE----TTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETT
T ss_pred CCcEEEEEECCCCCEEEEEc----CCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCC
Confidence 45689999999988877766 579999999985543333322 3667799999965431 13689999999
Q ss_pred ceEEeC
Q psy9278 93 GKLQIW 98 (98)
Q Consensus 93 G~L~iw 98 (98)
|.+.||
T Consensus 194 ~~i~iw 199 (343)
T 2xzm_R 194 GRLKVW 199 (343)
T ss_dssp SEEEEE
T ss_pred CEEEEE
Confidence 999998
No 64
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=97.47 E-value=0.00068 Score=49.04 Aligned_cols=72 Identities=11% Similarity=0.293 Sum_probs=56.0
Q ss_pred cCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 19 SLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 19 sl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
...-.+.++.|-|....+++.+ ..|.|.||+++.++....- ..+..++.|..|-.. .+.||+|+.||.+.||
T Consensus 137 ~h~~~v~~~~~~~~~~~l~s~s----~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~---~~~l~s~~~d~~v~iw 208 (420)
T 3vl1_A 137 AHVSEITKLKFFPSGEALISSS----QDMQLKIWSVKDGSNPRTL-IGHRATVTDIAIIDR---GRNVLSASLDGTIRLW 208 (420)
T ss_dssp SSSSCEEEEEECTTSSEEEEEE----TTSEEEEEETTTCCCCEEE-ECCSSCEEEEEEETT---TTEEEEEETTSCEEEE
T ss_pred cccCccEEEEECCCCCEEEEEe----CCCeEEEEeCCCCcCceEE-cCCCCcEEEEEEcCC---CCEEEEEcCCCcEEEe
Confidence 4556789999999877666554 5789999999887643222 237788999999553 5789999999999998
No 65
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=97.47 E-value=0.00073 Score=48.99 Aligned_cols=70 Identities=11% Similarity=0.230 Sum_probs=54.5
Q ss_pred CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
.-.++.+.|-|....+++-| ..|.|+||++..++....-. .+...+.|..|-++ .+.||+|+.||.+.||
T Consensus 55 ~~~v~~~~~s~d~~~l~s~s----~Dg~v~iWd~~~~~~~~~~~-~~~~~v~~~~~s~~---~~~l~s~~~d~~v~iw 124 (340)
T 1got_B 55 LAKIYAMHWGTDSRLLLSAS----QDGKLIIWDSYTTNKVHAIP-LRSSWVMTCAYAPS---GNYVACGGLDNICSIY 124 (340)
T ss_dssp SSCEEEEEECTTSSEEEEEE----TTTEEEEEETTTCCEEEEEE-CSSSCEEEEEECTT---SSEEEEEETTCEEEEE
T ss_pred CCceEEEEECCCCCEEEEEe----CCCcEEEEECCCCCcceEee-cCCccEEEEEECCC---CCEEEEEeCCCeEEEE
Confidence 45689999999887776655 57899999998776432222 26677999999664 4799999999999998
No 66
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=97.47 E-value=0.00056 Score=52.91 Aligned_cols=71 Identities=18% Similarity=0.370 Sum_probs=55.4
Q ss_pred CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
.-.+.+++|-|...++++.|+ ..|.|.||++..+.. +.....+...+.|..|-.. ..+||+|+-||.+.||
T Consensus 149 ~~~V~~v~~~p~~~~~las~s---~Dg~v~iwD~~~~~~-~~~~~~~~~~v~~v~wspd---g~~lasgs~dg~v~iw 219 (434)
T 2oit_A 149 GGMVIDMKWNPTVPSMVAVCL---ADGSIAVLQVTETVK-VCATLPSTVAVTSVCWSPK---GKQLAVGKQNGTVVQY 219 (434)
T ss_dssp GGSEEEEEECSSCTTEEEEEE---TTSCEEEEEESSSEE-EEEEECGGGCEEEEEECTT---SSCEEEEETTSCEEEE
T ss_pred CCceEEEEECCCCCCEEEEEE---CCCeEEEEEcCCCcc-eeeccCCCCceeEEEEcCC---CCEEEEEcCCCcEEEE
Confidence 456899999999666665554 479999999998843 3344456778999999544 5789999999999998
No 67
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=97.44 E-value=0.0012 Score=46.02 Aligned_cols=70 Identities=16% Similarity=0.192 Sum_probs=56.3
Q ss_pred CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecC-----ce
Q psy9278 20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFE-----GK 94 (98)
Q Consensus 20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~-----G~ 94 (98)
....+.++.|-|....+++.+ ..|.|.||+++.++.. ..++.+..+.|..|-.. .+.|+++..+ |.
T Consensus 73 h~~~v~~~~~~~~~~~l~s~~----~dg~i~iwd~~~~~~~--~~~~~~~~v~~~~~~~~---~~~l~~~~~~~~~~~g~ 143 (369)
T 3zwl_B 73 HTGTIWSIDVDCFTKYCVTGS----ADYSIKLWDVSNGQCV--ATWKSPVPVKRVEFSPC---GNYFLAILDNVMKNPGS 143 (369)
T ss_dssp CSSCEEEEEECTTSSEEEEEE----TTTEEEEEETTTCCEE--EEEECSSCEEEEEECTT---SSEEEEEECCBTTBCCE
T ss_pred cCCcEEEEEEcCCCCEEEEEe----CCCeEEEEECCCCcEE--EEeecCCCeEEEEEccC---CCEEEEecCCccCCCCE
Confidence 456789999999887777665 4789999999888654 44448889999999654 5789999998 99
Q ss_pred EEeC
Q psy9278 95 LQIW 98 (98)
Q Consensus 95 L~iw 98 (98)
+.+|
T Consensus 144 i~~~ 147 (369)
T 3zwl_B 144 INIY 147 (369)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9987
No 68
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=97.44 E-value=0.00083 Score=48.63 Aligned_cols=70 Identities=11% Similarity=0.222 Sum_probs=54.5
Q ss_pred CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEe-cccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTV-EKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~-e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
....+.++.|-|....+++-+ ..|.|+||++..++. +..+ .+..++.|..|-.. .+.||+|+.||.+.||
T Consensus 75 h~~~V~~~~~~~~~~~l~s~s----~D~~v~lwd~~~~~~--~~~~~~h~~~v~~v~~sp~---~~~l~s~~~d~~i~~w 145 (343)
T 2xzm_R 75 HNHFVSDLALSQENCFAISSS----WDKTLRLWDLRTGTT--YKRFVGHQSEVYSVAFSPD---NRQILSAGAEREIKLW 145 (343)
T ss_dssp CSSCEEEEEECSSTTEEEEEE----TTSEEEEEETTSSCE--EEEEECCCSCEEEEEECSS---TTEEEEEETTSCEEEE
T ss_pred CCCceEEEEECCCCCEEEEEc----CCCcEEEEECCCCcE--EEEEcCCCCcEEEEEECCC---CCEEEEEcCCCEEEEE
Confidence 345688999999776555444 579999999988864 3333 37889999999554 5789999999999998
No 69
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=97.43 E-value=0.00066 Score=50.48 Aligned_cols=64 Identities=17% Similarity=0.389 Sum_probs=50.7
Q ss_pred eeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 26 DCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 26 D~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
-+-|= +..++++|. .+.|.||+++.|++..+-+.+ +...|.|..|-.. .++||+|+.||.+.||
T Consensus 110 ~l~wS--~~n~lAvgl----d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspd---g~~lasgs~Dg~v~iW 174 (420)
T 4gga_A 110 LVDWS--SGNVLAVAL----DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKE---GNYLAVGTSSAEVQLW 174 (420)
T ss_dssp CEEEC--TTSEEEEEE----TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTT---SSEEEEEETTSCEEEE
T ss_pred eEEEC--CCCEEEEEe----CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCC---CCEEEEEECCCeEEEE
Confidence 35564 446888883 578999999999877666654 5678999999543 5799999999999998
No 70
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=97.43 E-value=0.001 Score=48.91 Aligned_cols=71 Identities=11% Similarity=0.096 Sum_probs=56.1
Q ss_pred cCCcceeeeeeecCCccEEEEccccCCccc-EEEEEecCCceeEEEEec---ccCceeeeecCCCCCCCceEEEeecCce
Q psy9278 19 SLDYQLFDCKWMPCSAKFIVLGMKPKGTGS-IQMYEINDGQPELVKTVE---KPNAFKCGTFNASPLSERYLATGDFEGK 94 (98)
Q Consensus 19 sl~yT~fD~kWIP~SArfV~lG~~prgtG~-iqIyeL~~~~l~~~~e~e---~~~~~KC~TFgaSsl~~r~lAtGdf~G~ 94 (98)
...-.+.++.|=|....+++-+ ..|. |+||++..++.. .+++ ++.++.|..|-.. .+.||+|+.||.
T Consensus 193 ~h~~~v~~~~~s~~g~~l~s~s----~d~~~v~iwd~~~~~~~--~~~~~g~h~~~v~~~~~s~~---~~~l~s~s~d~~ 263 (355)
T 3vu4_A 193 AHTNPIKMVRLNRKSDMVATCS----QDGTIIRVFKTEDGVLV--REFRRGLDRADVVDMKWSTD---GSKLAVVSDKWT 263 (355)
T ss_dssp CCSSCEEEEEECTTSSEEEEEE----TTCSEEEEEETTTCCEE--EEEECTTCCSCEEEEEECTT---SCEEEEEETTCE
T ss_pred ccCCceEEEEECCCCCEEEEEe----CCCCEEEEEECCCCcEE--EEEEcCCCCCcEEEEEECCC---CCEEEEEECCCE
Confidence 3456789999999776666554 5787 999999987643 4444 7889999999654 478999999999
Q ss_pred EEeC
Q psy9278 95 LQIW 98 (98)
Q Consensus 95 L~iw 98 (98)
+.||
T Consensus 264 v~iw 267 (355)
T 3vu4_A 264 LHVF 267 (355)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9998
No 71
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=97.42 E-value=0.00088 Score=47.57 Aligned_cols=71 Identities=17% Similarity=0.480 Sum_probs=50.2
Q ss_pred cceeeeeeecCCccEEEEccccCCcccEEEEEe----cCCce----eEEEEecc-----------cCceeeeecCCCCCC
Q psy9278 22 YQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEI----NDGQP----ELVKTVEK-----------PNAFKCGTFNASPLS 82 (98)
Q Consensus 22 yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL----~~~~l----~~~~e~e~-----------~~~~KC~TFgaSsl~ 82 (98)
-.+..+.|-|....+++.|. ..|.|+||++ +.++. ....++.. ..++.|..|-..
T Consensus 46 ~~v~~~~~s~~~~~~l~~~~---~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--- 119 (425)
T 1r5m_A 46 DNIVSSTWNPLDESILAYGE---KNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHD--- 119 (425)
T ss_dssp SCCSEEEECSSCTTEEEEEE---TBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTT---
T ss_pred CceEEEEECCCCCcEEEEec---CCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCC---
Confidence 36789999999884666653 5799999999 77762 22333333 448999999653
Q ss_pred CceEEEeecCceEEeC
Q psy9278 83 ERYLATGDFEGKLQIW 98 (98)
Q Consensus 83 ~r~lAtGdf~G~L~iw 98 (98)
.+.||+|+.||.+.||
T Consensus 120 ~~~l~~~~~dg~i~i~ 135 (425)
T 1r5m_A 120 GNSIVTGVENGELRLW 135 (425)
T ss_dssp SSEEEEEETTSCEEEE
T ss_pred CCEEEEEeCCCeEEEE
Confidence 5799999999999998
No 72
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=97.42 E-value=0.00067 Score=49.09 Aligned_cols=76 Identities=8% Similarity=0.122 Sum_probs=56.2
Q ss_pred hhhcCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCce-eEEEEecccCceeeeecCCCCCCCceEEEeecCce
Q psy9278 16 VEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQP-ELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGK 94 (98)
Q Consensus 16 i~ksl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l-~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~ 94 (98)
+.......+..+.|-|...++++.|. ..|.|.||++..++. ...-...+..++.|..|- ..+.||+|+.||.
T Consensus 285 ~~~~~~~~v~~~~~~~~~~~~l~~g~---~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~l~s~~~d~~ 357 (420)
T 3vl1_A 285 LPSKFTCSCNSLTVDGNNANYIYAGY---ENGMLAQWDLRSPECPVGEFLINEGTPINNVYFA----AGALFVSSGFDTS 357 (420)
T ss_dssp ECCTTSSCEEEEEECSSCTTEEEEEE---TTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEE----TTEEEEEETTTEE
T ss_pred cccccCCCceeEEEeCCCCCEEEEEe---CCCeEEEEEcCCCcCchhhhhccCCCCceEEEeC----CCCEEEEecCCcc
Confidence 33345567899999999986777764 569999999988753 222223366788888664 2469999999999
Q ss_pred EEeC
Q psy9278 95 LQIW 98 (98)
Q Consensus 95 L~iw 98 (98)
+.||
T Consensus 358 v~iw 361 (420)
T 3vl1_A 358 IKLD 361 (420)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9998
No 73
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=97.41 E-value=0.0013 Score=49.35 Aligned_cols=72 Identities=8% Similarity=0.051 Sum_probs=57.3
Q ss_pred CcceeeeeeecCCccEEEEccccCCcccEEEEEec--CC-ceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEe
Q psy9278 21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEIN--DG-QPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQI 97 (98)
Q Consensus 21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~--~~-~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~i 97 (98)
...+.++.|-|....+++.|+ ..|.|+||+++ .+ .++.+.....+..+.|..|-.. .+.||+|+.+|.+.+
T Consensus 102 ~~~v~~~~~s~d~~~l~~~~~---~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~---~~~l~~~~~~g~v~~ 175 (450)
T 2vdu_B 102 YSYIRNLRLTSDESRLIACAD---SDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAED---DTTVIIADKFGDVYS 175 (450)
T ss_dssp CCCEEEEEECTTSSEEEEEEG---GGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTT---SSEEEEEETTSEEEE
T ss_pred CCceEEEEEcCCCCEEEEEEC---CCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCC---CCEEEEEeCCCcEEE
Confidence 446899999999888767775 36899999998 55 4555555567788999999554 479999999999987
Q ss_pred C
Q psy9278 98 W 98 (98)
Q Consensus 98 w 98 (98)
|
T Consensus 176 ~ 176 (450)
T 2vdu_B 176 I 176 (450)
T ss_dssp E
T ss_pred E
Confidence 6
No 74
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=97.41 E-value=0.00087 Score=50.31 Aligned_cols=71 Identities=11% Similarity=0.041 Sum_probs=55.6
Q ss_pred CcceeeeeeecC--CccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 21 DYQLFDCKWMPC--SAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 21 ~yT~fD~kWIP~--SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
.-.+.++.|-|. ..++++.|+ ..|.|.||++..++........+..++.|..|- ..+.||+|+.||.|.||
T Consensus 195 ~~~v~~~~~sp~~~~~~~l~s~~---~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s----d~~~l~s~~~d~~v~vw 267 (450)
T 2vdu_B 195 VSMLTDVHLIKDSDGHQFIITSD---RDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG----KDYLLLSAGGDDKIFAW 267 (450)
T ss_dssp SSCEEEEEEEECTTSCEEEEEEE---TTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC----STTEEEEEESSSEEEEE
T ss_pred cCceEEEEEcCCCCCCcEEEEEc---CCCcEEEEECCCCceeeeeecCCCCceEEEEEC----CCCEEEEEeCCCeEEEE
Confidence 346889999998 245666664 358999999998876544334577889999996 46899999999999998
No 75
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=97.40 E-value=0.00072 Score=50.73 Aligned_cols=74 Identities=19% Similarity=0.327 Sum_probs=55.4
Q ss_pred CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCc-eeEEEEe-cccCceeeeecCCCCCCCceEEEeecCceEEe
Q psy9278 20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQ-PELVKTV-EKPNAFKCGTFNASPLSERYLATGDFEGKLQI 97 (98)
Q Consensus 20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~-l~~~~e~-e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~i 97 (98)
..-.+.++.|-|...++++.|. ..|.|.||++..++ .+.+..+ .+..++.|..|-.. .+..||+|+.||.+.|
T Consensus 230 h~~~v~~v~~~p~~~~~l~s~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~--~~~~l~tg~~dg~v~v 304 (430)
T 2xyi_A 230 HTAVVEDVAWHLLHESLFGSVA---DDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPY--SEFILATGSADKTVAL 304 (430)
T ss_dssp CSSCEEEEEECSSCTTEEEEEE---TTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSS--CTTEEEEEETTSEEEE
T ss_pred CCCCEeeeEEeCCCCCEEEEEe---CCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCC--CCCEEEEEeCCCeEEE
Confidence 3456899999996666655553 68999999998763 2333333 47788999999554 3457999999999999
Q ss_pred C
Q psy9278 98 W 98 (98)
Q Consensus 98 w 98 (98)
|
T Consensus 305 w 305 (430)
T 2xyi_A 305 W 305 (430)
T ss_dssp E
T ss_pred E
Confidence 8
No 76
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=97.40 E-value=0.00051 Score=55.22 Aligned_cols=79 Identities=13% Similarity=0.193 Sum_probs=56.6
Q ss_pred CCcceeeeeeecCC-c-------cEEEEccccC----------------CcccEEEEEecCCceeEE--EEec-ccCcee
Q psy9278 20 LDYQLFDCKWMPCS-A-------KFIVLGMKPK----------------GTGSIQMYEINDGQPELV--KTVE-KPNAFK 72 (98)
Q Consensus 20 l~yT~fD~kWIP~S-A-------rfV~lG~~pr----------------gtG~iqIyeL~~~~l~~~--~e~e-~~~~~K 72 (98)
+...|+++.|.|.. . .++++|.... ..|.|+||+++.+++... ..+. +...+.
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~ 211 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVW 211 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEE
Confidence 36789999999986 1 7888887553 458899999998876432 2233 346789
Q ss_pred eeecCCCC---CCCceEEEeecCceEEeC
Q psy9278 73 CGTFNASP---LSERYLATGDFEGKLQIW 98 (98)
Q Consensus 73 C~TFgaSs---l~~r~lAtGdf~G~L~iw 98 (98)
+..|-... .....||+|+.||.+.||
T Consensus 212 ~v~wsp~~~~~~~~~~LAs~s~DgtvrlW 240 (524)
T 2j04_B 212 DLKWHEGCHAPHLVGCLSFVSQEGTINFL 240 (524)
T ss_dssp EEEECSSCCCSSSSCEEEEEETTSCEEEE
T ss_pred EEEECCCCCCCCCCceEEEEecCCeEEEE
Confidence 99997641 123689999999999998
No 77
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=97.39 E-value=0.00065 Score=49.87 Aligned_cols=73 Identities=11% Similarity=0.001 Sum_probs=54.8
Q ss_pred cceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCC-CCCCceEEEeecCceEEeC
Q psy9278 22 YQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNAS-PLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 22 yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaS-sl~~r~lAtGdf~G~L~iw 98 (98)
-.+..+.|-|....+++-+ ..|.|.||++..++....-+.....++.|..|-.. +...+.||+|+-||.+.||
T Consensus 215 ~~v~~~~~s~~~~~l~s~~----~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iw 288 (437)
T 3gre_A 215 GAVSSICIDEECCVLILGT----TRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIW 288 (437)
T ss_dssp CCEEEEEECTTSCEEEEEE----TTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEE
T ss_pred CceEEEEECCCCCEEEEEc----CCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEE
Confidence 4688999999965555444 46999999999876544444466778999966533 3346799999999999998
No 78
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=97.35 E-value=0.00058 Score=51.19 Aligned_cols=72 Identities=15% Similarity=0.173 Sum_probs=53.9
Q ss_pred CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
.-.|.+++|-|...++++.|+ ..|.|+||+++.+.++.+...+ ....+.|..|-.. .+.||+|+.||.+.||
T Consensus 164 ~~~V~~l~f~p~~~~~l~s~s---~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~g~~dg~i~~w 236 (435)
T 4e54_B 164 GGSITGLKFNPLNTNQFYASS---MEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSAS---SRMVVTGDNVGNVILL 236 (435)
T ss_dssp SCCCCEEEECSSCTTEEEEEC---SSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETT---TTEEEEECSSSBEEEE
T ss_pred CCCEEEEEEeCCCCCEEEEEe---CCCEEEEeeccCCceeEEeccCCCCccEEEEEECCC---CCEEEEEeCCCcEeee
Confidence 456889999996555555443 5789999999988887776554 3344667777543 4789999999999998
No 79
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=97.35 E-value=0.00097 Score=48.10 Aligned_cols=72 Identities=11% Similarity=0.102 Sum_probs=54.0
Q ss_pred cCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCcee-EEEEecccCceeeeecCCCCCCCceEEEeecCceEEe
Q psy9278 19 SLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPE-LVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQI 97 (98)
Q Consensus 19 sl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~-~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~i 97 (98)
..+..+..+.|-|.... ++.|. ..|.|+||++..++.. ..-+..+..++.|..|-.. .+.||+|+ ++.+.|
T Consensus 168 ~~~~~i~~~~~~pdg~~-lasg~---~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~---g~~l~s~~-~~~v~i 239 (343)
T 3lrv_A 168 KSDVEYSSGVLHKDSLL-LALYS---PDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADN---GYWMVVEC-DQTVVC 239 (343)
T ss_dssp CSSCCCCEEEECTTSCE-EEEEC---TTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTT---SSEEEEEE-SSBEEE
T ss_pred CCCCceEEEEECCCCCE-EEEEc---CCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCC---CCEEEEEe-CCeEEE
Confidence 34455788999997654 44443 6799999999988765 2223346889999999554 57899999 789999
Q ss_pred C
Q psy9278 98 W 98 (98)
Q Consensus 98 w 98 (98)
|
T Consensus 240 w 240 (343)
T 3lrv_A 240 F 240 (343)
T ss_dssp E
T ss_pred E
Confidence 8
No 80
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=97.33 E-value=0.0013 Score=48.45 Aligned_cols=66 Identities=11% Similarity=0.253 Sum_probs=54.4
Q ss_pred eeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 24 LFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 24 ~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
+..+.|=| ..+++.| ..|.|.||+++.+++..+.+.++...+.|..|-.. .+.||+|+-||.+.||
T Consensus 96 ~~~~~~s~--~~l~~~~----~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~---~~~l~~~~~dg~i~iw 161 (401)
T 4aez_A 96 LNLLDWSN--LNVVAVA----LERNVYVWNADSGSVSALAETDESTYVASVKWSHD---GSFLSVGLGNGLVDIY 161 (401)
T ss_dssp CBCEEECT--TSEEEEE----ETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTT---SSEEEEEETTSCEEEE
T ss_pred EEEEeecC--CCEEEEE----CCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCC---CCEEEEECCCCeEEEE
Confidence 33466655 5677766 67899999999999988888888899999999653 5799999999999998
No 81
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=97.33 E-value=0.0015 Score=44.76 Aligned_cols=69 Identities=12% Similarity=0.224 Sum_probs=53.1
Q ss_pred CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
....+..+.|-|.. ++++.| ..|.|.||++..+++...-+. +..++.|..|-... .|++|+.||.+.||
T Consensus 224 ~~~~i~~~~~~~~~-~l~~~~----~dg~v~iwd~~~~~~~~~~~~-~~~~i~~~~~~~~~----~~~~~~~dg~i~iw 292 (313)
T 3odt_A 224 HESFVYCIKLLPNG-DIVSCG----EDRTVRIWSKENGSLKQVITL-PAISIWSVDCMSNG----DIIVGSSDNLVRIF 292 (313)
T ss_dssp CSSCEEEEEECTTS-CEEEEE----TTSEEEEECTTTCCEEEEEEC-SSSCEEEEEECTTS----CEEEEETTSCEEEE
T ss_pred CCceEEEEEEecCC-CEEEEe----cCCEEEEEECCCCceeEEEec-cCceEEEEEEccCC----CEEEEeCCCcEEEE
Confidence 44678899999998 777666 579999999998875443332 45588999885543 38889999999998
No 82
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=97.32 E-value=0.0014 Score=51.86 Aligned_cols=72 Identities=17% Similarity=0.310 Sum_probs=58.3
Q ss_pred CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
+.+.+..+.|-|.. ++++.|+ ..|.|+||+++.+++..+....++..+.|..|-.. .+.||+|+.||.+.+|
T Consensus 447 ~~~~v~~va~spdg-~~lasgs---~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspd---g~~las~s~d~~v~~w 518 (611)
T 1nr0_A 447 ISYNSSCVALSNDK-QFVAVGG---QDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNN---GAFLVATDQSRKVIPY 518 (611)
T ss_dssp CSSCEEEEEECTTS-CEEEEEE---TTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTT---SSEEEEEETTSCEEEE
T ss_pred cCCCceEEEEeCCC-CEEEEeC---CCCeEEEEEccCCceeeeeccCCCCceEEEEECCC---CCEEEEEcCCCCEEEE
Confidence 34667778888875 4556664 47899999999998877777778999999999554 5799999999999998
No 83
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=97.31 E-value=0.0014 Score=47.75 Aligned_cols=70 Identities=11% Similarity=0.281 Sum_probs=54.7
Q ss_pred CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
....+..+.|-|....+++-+ ..|.|+||+++.+++. ..+. +...+.|..|-+. .+.||+|+.||.+.||
T Consensus 205 h~~~v~~l~~spd~~~l~s~s----~dg~i~iwd~~~~~~~--~~~~~h~~~v~~~~~sp~---~~~l~s~s~D~~v~iw 275 (321)
T 3ow8_A 205 HAMPIRSLTFSPDSQLLVTAS----DDGYIKIYDVQHANLA--GTLSGHASWVLNVAFCPD---DTHFVSSSSDKSVKVW 275 (321)
T ss_dssp CSSCCCEEEECTTSCEEEEEC----TTSCEEEEETTTCCEE--EEECCCSSCEEEEEECTT---SSEEEEEETTSCEEEE
T ss_pred cCCceeEEEEcCCCCEEEEEc----CCCeEEEEECCCccee--EEEcCCCCceEEEEECCC---CCEEEEEeCCCcEEEE
Confidence 345688999999877666554 5789999999887653 3443 6677999999654 4789999999999998
No 84
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=97.31 E-value=0.0018 Score=45.91 Aligned_cols=70 Identities=11% Similarity=0.267 Sum_probs=54.2
Q ss_pred CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
....+..+.|-|.. .+++.+ ..|.|.||+++.+++..... .+..++.|..|-.. .+.||+|+.||.+.||
T Consensus 288 ~~~~i~~~~~~~~~-~l~~~~----~d~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~s~~---~~~l~~~~~dg~i~i~ 357 (425)
T 1r5m_A 288 HSQSIVSASWVGDD-KVISCS----MDGSVRLWSLKQNTLLALSI-VDGVPIFAGRISQD---GQKYAVAFMDGQVNVY 357 (425)
T ss_dssp CSSCEEEEEEETTT-EEEEEE----TTSEEEEEETTTTEEEEEEE-CTTCCEEEEEECTT---SSEEEEEETTSCEEEE
T ss_pred CCccEEEEEECCCC-EEEEEe----CCCcEEEEECCCCcEeEecc-cCCccEEEEEEcCC---CCEEEEEECCCeEEEE
Confidence 45678899999998 666555 57899999998876443332 25678899988554 5799999999999998
No 85
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=97.28 E-value=0.0016 Score=47.85 Aligned_cols=72 Identities=11% Similarity=0.304 Sum_probs=54.3
Q ss_pred hcCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEe-cccCceeeeecCCCCCCCceEEEeecCceEE
Q psy9278 18 KSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTV-EKPNAFKCGTFNASPLSERYLATGDFEGKLQ 96 (98)
Q Consensus 18 ksl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~-e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~ 96 (98)
+...+.+..+.|-|... +++.|. ..|.|+||++..++.. ..+ .+...+-|..|-+. .+.||+|+.||.+.
T Consensus 281 ~~~~~~~~~~~~s~~g~-~l~~g~---~d~~i~vwd~~~~~~~--~~l~~h~~~v~~l~~spd---g~~l~sgs~D~~v~ 351 (354)
T 2pbi_B 281 ESIIFGASSVDFSLSGR-LLFAGY---NDYTINVWDVLKGSRV--SILFGHENRVSTLRVSPD---GTAFCSGSWDHTLR 351 (354)
T ss_dssp TTCCSCEEEEEECTTSS-EEEEEE---TTSCEEEEETTTCSEE--EEECCCSSCEEEEEECTT---SSCEEEEETTSEEE
T ss_pred CCcccceeEEEEeCCCC-EEEEEE---CCCcEEEEECCCCceE--EEEECCCCcEEEEEECCC---CCEEEEEcCCCCEE
Confidence 34456778888988765 555553 5789999999877632 333 37788999999544 47899999999999
Q ss_pred eC
Q psy9278 97 IW 98 (98)
Q Consensus 97 iw 98 (98)
||
T Consensus 352 vW 353 (354)
T 2pbi_B 352 VW 353 (354)
T ss_dssp EE
T ss_pred ec
Confidence 98
No 86
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.28 E-value=0.0017 Score=47.99 Aligned_cols=68 Identities=10% Similarity=0.318 Sum_probs=54.0
Q ss_pred CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
....++++.|-|....+++.+ ..|.|+||++..++. +.+++ +..++.|..|. .+.|++|+.||.+.+|
T Consensus 309 ~~~~v~~~~~~~~~~~l~sg~----~dg~i~vwd~~~~~~--~~~~~~h~~~v~~~~~~-----~~~l~s~s~dg~v~vw 377 (464)
T 3v7d_B 309 HTDRIYSTIYDHERKRCISAS----MDTTIRIWDLENGEL--MYTLQGHTALVGLLRLS-----DKFLVSAAADGSIRGW 377 (464)
T ss_dssp CSSCEEEEEEETTTTEEEEEE----TTSCEEEEETTTTEE--EEEECCCSSCEEEEEEC-----SSEEEEEETTSEEEEE
T ss_pred CCCCEEEEEEcCCCCEEEEEe----CCCcEEEEECCCCcE--EEEEeCCCCcEEEEEEc-----CCEEEEEeCCCcEEEE
Confidence 356688999999877766655 578999999988764 34443 77888998884 4689999999999998
No 87
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=97.27 E-value=0.00078 Score=50.51 Aligned_cols=70 Identities=13% Similarity=0.280 Sum_probs=54.0
Q ss_pred CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
.-.+..+.|-|....+++-| ..|.|.||+++.+++...-+ .+..++.|..|-.+ .+.||+|+.||.+.||
T Consensus 108 ~~~V~~~~~~p~~~~l~s~s----~Dg~i~vwd~~~~~~~~~l~-~h~~~V~~v~~~~~---~~~l~sgs~D~~i~iw 177 (410)
T 1vyh_C 108 RSPVTRVIFHPVFSVMVSAS----EDATIKVWDYETGDFERTLK-GHTDSVQDISFDHS---GKLLASCSADMTIKLW 177 (410)
T ss_dssp SSCEEEEEECSSSSEEEEEE----SSSCEEEEETTTCCCCEEEC-CCSSCEEEEEECTT---SSEEEEEETTSCCCEE
T ss_pred CCcEEEEEEcCCCCEEEEEe----CCCeEEEEECCCCcEEEEEe-ccCCcEEEEEEcCC---CCEEEEEeCCCeEEEE
Confidence 34577888888776666555 57999999999887643322 26778999999654 4689999999999998
No 88
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=97.26 E-value=0.0013 Score=53.74 Aligned_cols=75 Identities=15% Similarity=0.284 Sum_probs=60.4
Q ss_pred cCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEe
Q psy9278 19 SLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQI 97 (98)
Q Consensus 19 sl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~i 97 (98)
..+-.+.++.|-|....+++.| ..|.|.||+++.++.+.+...+ +..++.|..|-... ..+.||+|+.||.+.|
T Consensus 7 gH~~~V~~l~~s~dg~~latg~----~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 7 AHNELIHDAVLDYYGKRLATCS----SDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK-FGTILASCSYDGKVLI 81 (753)
T ss_dssp -CCCCEEEECCCSSSCCEEEEE----TTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTT-SCSEEEEEETTSCEEE
T ss_pred cCcceeEEEEECCCCCeEEEEE----CCCcEEEEecCCCCCccceeccCCcCceEEEEecCCC-CCCEEEEEeCCCeEEE
Confidence 3455788999999887776665 4799999999988888888776 78899999995442 1468999999999999
Q ss_pred C
Q psy9278 98 W 98 (98)
Q Consensus 98 w 98 (98)
|
T Consensus 82 w 82 (753)
T 3jro_A 82 W 82 (753)
T ss_dssp E
T ss_pred E
Confidence 8
No 89
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=97.26 E-value=0.00092 Score=49.33 Aligned_cols=71 Identities=11% Similarity=0.188 Sum_probs=55.2
Q ss_pred CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
..-.++++.|-|....++.-+ ..|.|.||++..++....-+ .+...+.|+.|-.+ .+.||+|+.||.+.||
T Consensus 65 H~~~V~~~~~sp~~~~l~s~s----~D~~v~iWd~~~~~~~~~~~-~h~~~v~~~~~s~~---g~~las~~~d~~v~iw 135 (380)
T 3iz6_a 65 HSGKVYSLDWTPEKNWIVSAS----QDGRLIVWNALTSQKTHAIK-LHCPWVMECAFAPN---GQSVACGGLDSACSIF 135 (380)
T ss_dssp CSSCEEEEEECTTSSCEEEEE----TTSEEEEEETTTTEEEEEEE-CCCTTCCCCEECTT---SSEEEECCSSSCCEEE
T ss_pred cccEEEEEEEcCCCCEEEEEe----CCCeEEEEECCCCccceEEe-cCCCCEEEEEECCC---CCEEEEeeCCCcEEEE
Confidence 456789999999887776655 57999999998876543332 25667888888554 4789999999999998
No 90
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=97.24 E-value=0.0022 Score=47.67 Aligned_cols=70 Identities=13% Similarity=0.209 Sum_probs=55.2
Q ss_pred cceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 22 YQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 22 yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
..+..+.|.|....+|+.+.. ..|.|.||++..++ ++.+++ +...+.|..|-.. .+.||||+-||.|.||
T Consensus 321 ~~v~~~~~~~~~~~lv~~sg~--~d~~I~iwd~~~~~--~v~~l~gH~~~V~~l~~spd---g~~l~S~s~D~tvriW 391 (420)
T 4gga_A 321 SQVCSILWSPHYKELISGHGF--AQNQLVIWKYPTMA--KVAELKGHTSRVLSLTMSPD---GATVASAAADETLRLW 391 (420)
T ss_dssp SCEEEEEEETTTTEEEEEECT--TTCCEEEEETTTCC--EEEEECCCSSCEEEEEECTT---SSCEEEEETTTEEEEE
T ss_pred cceeeeeecCCCCeEEEEEec--CCCEEEEEECCCCc--EEEEEcCCCCCEEEEEEcCC---CCEEEEEecCCeEEEE
Confidence 456778899999888876432 35789999997764 566666 7889999999543 4689999999999999
No 91
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=97.23 E-value=0.0013 Score=49.60 Aligned_cols=73 Identities=14% Similarity=0.239 Sum_probs=56.7
Q ss_pred CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec--ccCceeeeecCCCC-------CCCceEEEee
Q psy9278 20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE--KPNAFKCGTFNASP-------LSERYLATGD 90 (98)
Q Consensus 20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e--~~~~~KC~TFgaSs-------l~~r~lAtGd 90 (98)
....+..+.|-|....+++.+ ..|.|.||+++.+++. .+.+ +..++.|..|-+.. ...+.||+|+
T Consensus 487 ~~~~v~~~~~s~~g~~l~~~~----~dg~i~iw~~~~~~~~--~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~ 560 (615)
T 1pgu_A 487 LRAKPSYISISPSETYIAAGD----VMGKILLYDLQSREVK--TSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGS 560 (615)
T ss_dssp CSSCEEEEEECTTSSEEEEEE----TTSCEEEEETTTTEEE--ECCSCCCSSCEEEEEECCCC------CCSCCEEEEEE
T ss_pred ccCceEEEEECCCCCEEEEcC----CCCeEEEeeCCCCcce--eEeecCCCCceeEEEEcCccccccccccCCCEEEEEc
Confidence 445678899999887666655 4799999999988664 3444 78899999996611 1468999999
Q ss_pred cCceEEeC
Q psy9278 91 FEGKLQIW 98 (98)
Q Consensus 91 f~G~L~iw 98 (98)
-||.+.||
T Consensus 561 ~dg~i~iw 568 (615)
T 1pgu_A 561 LDTNIFIY 568 (615)
T ss_dssp TTSCEEEE
T ss_pred CCCcEEEE
Confidence 99999998
No 92
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.23 E-value=0.0016 Score=48.10 Aligned_cols=72 Identities=15% Similarity=0.362 Sum_probs=55.2
Q ss_pred cCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEe
Q psy9278 19 SLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQI 97 (98)
Q Consensus 19 sl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~i 97 (98)
...-.+.+++|.|.. .+++.+ ..|.|.||+++.++. +...+ +..++.|..|-.+. ....||+|+.||.+.+
T Consensus 160 ~h~~~V~~l~~~~~~-~l~s~s----~dg~i~vwd~~~~~~--~~~~~~h~~~v~~l~~~~~~-~~~~l~s~s~d~~i~v 231 (464)
T 3v7d_B 160 GHDGGVWALKYAHGG-ILVSGS----TDRTVRVWDIKKGCC--THVFEGHNSTVRCLDIVEYK-NIKYIVTGSRDNTLHV 231 (464)
T ss_dssp CCSSCEEEEEECSTT-EEEEEE----TTSCEEEEETTTTEE--EEEECCCSSCEEEEEEEESS-SCEEEEEEETTSCEEE
T ss_pred CCCcCEEEEEEcCCC-EEEEEe----CCCCEEEEECCCCcE--EEEECCCCCccEEEEEecCC-CCCEEEEEcCCCcEEE
Confidence 345678999999988 444444 579999999998863 44444 78899999986432 3468999999999999
Q ss_pred C
Q psy9278 98 W 98 (98)
Q Consensus 98 w 98 (98)
|
T Consensus 232 w 232 (464)
T 3v7d_B 232 W 232 (464)
T ss_dssp E
T ss_pred e
Confidence 8
No 93
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=97.22 E-value=0.0015 Score=49.18 Aligned_cols=69 Identities=13% Similarity=0.191 Sum_probs=53.6
Q ss_pred ceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEe---cccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 23 QLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTV---EKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 23 T~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~---e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
.+..+.|-|...++++.|. ..|.|.||++..++....-.. .+..++.|..|- ..+.|++|+.||.+.+|
T Consensus 208 ~v~~~~~~~~~~~~l~~~~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~l~~~~~d~~i~~w 279 (615)
T 1pgu_A 208 FVRDVEFSPDSGEFVITVG---SDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL----DSQKFATVGADATIRVW 279 (615)
T ss_dssp CEEEEEECSTTCCEEEEEE---TTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES----SSSEEEEEETTSEEEEE
T ss_pred eEEEEEECCCCCCEEEEEe---CCCeEEEEECCCCCEeEEecccccccCCceEEEEEc----CCCEEEEEcCCCcEEEE
Confidence 6889999999445555543 378999999988865433322 678899999996 46799999999999998
No 94
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=97.21 E-value=0.00093 Score=56.71 Aligned_cols=66 Identities=21% Similarity=0.449 Sum_probs=54.0
Q ss_pred cceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccC-----ceeeeecCCCCCCCceEEEeecCceEE
Q psy9278 22 YQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPN-----AFKCGTFNASPLSERYLATGDFEGKLQ 96 (98)
Q Consensus 22 yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~-----~~KC~TFgaSsl~~r~lAtGdf~G~L~ 96 (98)
-.+.+|+|=|...++++.+ ..|.+.||+.+. ++...++.. ++.|..|-+ ..+.||+|+.||.+.
T Consensus 86 ~~V~~vawSPdG~~LAs~s----~dg~V~iwd~~~----~l~~l~~~~~~~~~sv~svafSP---DG~~LAsgs~DGtVk 154 (588)
T 2j04_A 86 CYPRVCKPSPIDDWMAVLS----NNGNVSVFKDNK----MLTNLDSKGNLSSRTYHCFEWNP---IESSIVVGNEDGELQ 154 (588)
T ss_dssp CCEEEEEECSSSSCEEEEE----TTSCEEEEETTE----EEEECCCSSCSTTTCEEEEEECS---SSSCEEEEETTSEEE
T ss_pred CcEEEEEECCCCCEEEEEe----CCCcEEEEeCCc----eeeeccCCCccccccEEEEEEcC---CCCEEEEEcCCCEEE
Confidence 4599999999999999888 899999999544 555555222 599999944 468999999999999
Q ss_pred eC
Q psy9278 97 IW 98 (98)
Q Consensus 97 iw 98 (98)
||
T Consensus 155 IW 156 (588)
T 2j04_A 155 FF 156 (588)
T ss_dssp EE
T ss_pred EE
Confidence 98
No 95
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=97.19 E-value=0.0016 Score=48.05 Aligned_cols=71 Identities=20% Similarity=0.357 Sum_probs=53.3
Q ss_pred CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEeccc------CceeeeecCCCCCCCceEEEeecCce
Q psy9278 21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKP------NAFKCGTFNASPLSERYLATGDFEGK 94 (98)
Q Consensus 21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~------~~~KC~TFgaSsl~~r~lAtGdf~G~ 94 (98)
...+..+.|-|....|++-+ ..|.|+||++..++...+...+.. ..+.|..|-.+ .+.||+|+-||.
T Consensus 249 ~~~v~~v~~~p~~~~l~s~s----~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---g~~l~~g~~dg~ 321 (380)
T 3iz6_a 249 EGDINSVKFFPDGQRFGTGS----DDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSIS---GRLLFAGYSNGD 321 (380)
T ss_dssp SSCCCEEEECTTSSEEEEEC----SSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSS---SSEEEEECTTSC
T ss_pred CCCeEEEEEecCCCeEEEEc----CCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCC---CCEEEEEECCCC
Confidence 45688999999988777665 679999999998865444333221 13677777544 579999999999
Q ss_pred EEeC
Q psy9278 95 LQIW 98 (98)
Q Consensus 95 L~iw 98 (98)
+.||
T Consensus 322 i~vw 325 (380)
T 3iz6_a 322 CYVW 325 (380)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9998
No 96
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=97.19 E-value=0.0023 Score=47.41 Aligned_cols=67 Identities=12% Similarity=0.195 Sum_probs=52.9
Q ss_pred ceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 23 QLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 23 T~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
.+.++.|-|....+++-+ ..|.|+||+++.+++. ..++ +...+.|..|-.. .+.||+|+.||.+.||
T Consensus 125 ~v~~v~~s~dg~~l~s~~----~d~~i~iwd~~~~~~~--~~~~~h~~~v~~~~~~p~---~~~l~s~s~d~~v~iw 192 (393)
T 1erj_A 125 YIRSVCFSPDGKFLATGA----EDRLIRIWDIENRKIV--MILQGHEQDIYSLDYFPS---GDKLVSGSGDRTVRIW 192 (393)
T ss_dssp BEEEEEECTTSSEEEEEE----TTSCEEEEETTTTEEE--EEECCCSSCEEEEEECTT---SSEEEEEETTSEEEEE
T ss_pred eEEEEEECCCCCEEEEEc----CCCeEEEEECCCCcEE--EEEccCCCCEEEEEEcCC---CCEEEEecCCCcEEEE
Confidence 478999999877666544 4789999999888643 3333 7778999999654 4689999999999998
No 97
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=97.18 E-value=0.0015 Score=49.36 Aligned_cols=69 Identities=7% Similarity=0.208 Sum_probs=52.9
Q ss_pred CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
.-.+..+.|-|....+++.| ..|.|+||++++..+..+ ..+..++.|..|-+. .+.||||+-||.+.||
T Consensus 508 ~~~v~~l~~s~dg~~l~s~~----~dg~v~lwd~~~~~~~~~--~~h~~~v~~~~fs~d---g~~l~s~~~D~~i~~W 576 (577)
T 2ymu_A 508 SSSVRGVAFSPDGQTIASAS----DDKTVKLWNRNGQLLQTL--TGHSSSVWGVAFSPD---GQTIASASSDKTVKLW 576 (577)
T ss_dssp SSCEEEEEECTTSSCEEEEE----TTSEEEEECTTSCEEEEE--ECCSSCEEEEEECTT---SSCEEEEETTSCEEEE
T ss_pred CCCEEEEEEcCCCCEEEEEE----CcCEEEEEeCCCCEEEEE--cCCCCCEEEEEEcCC---CCEEEEEeCCCEEEEe
Confidence 35678899999887766655 468999999865433332 237889999999543 5789999999999999
No 98
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=97.18 E-value=0.0012 Score=53.04 Aligned_cols=69 Identities=17% Similarity=0.246 Sum_probs=50.3
Q ss_pred ceeeeeeecCC-----ccEEEEccccCCcccEEEEEecCCcee---------EEEEec-ccCceeeeecCCCCCCCceEE
Q psy9278 23 QLFDCKWMPCS-----AKFIVLGMKPKGTGSIQMYEINDGQPE---------LVKTVE-KPNAFKCGTFNASPLSERYLA 87 (98)
Q Consensus 23 T~fD~kWIP~S-----ArfV~lG~~prgtG~iqIyeL~~~~l~---------~~~e~e-~~~~~KC~TFgaSsl~~r~lA 87 (98)
.+.+++|.|.. .++++.|+ ..|.|+||+++.++.. ....++ +..++.|..|-.. ..||
T Consensus 209 ~V~~v~wsp~~~~~~~~~~LAs~s---~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~----~~la 281 (524)
T 2j04_B 209 EVWDLKWHEGCHAPHLVGCLSFVS---QEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP----TTVV 281 (524)
T ss_dssp SEEEEEECSSCCCSSSSCEEEEEE---TTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS----SEEE
T ss_pred cEEEEEECCCCCCCCCCceEEEEe---cCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC----CeEE
Confidence 47899999972 35666554 4789999999877532 011222 5578999999532 3799
Q ss_pred EeecCceEEeC
Q psy9278 88 TGDFEGKLQIW 98 (98)
Q Consensus 88 tGdf~G~L~iw 98 (98)
+|+.||.+.||
T Consensus 282 sgs~DgtV~lW 292 (524)
T 2j04_B 282 CGFKNGFVAEF 292 (524)
T ss_dssp EEETTSEEEEE
T ss_pred EEeCCCEEEEE
Confidence 99999999998
No 99
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=97.16 E-value=0.0023 Score=50.93 Aligned_cols=74 Identities=12% Similarity=0.236 Sum_probs=57.8
Q ss_pred cCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCce---eEEEEe-cccCceeeeecCCCCCCCceEEEeecCce
Q psy9278 19 SLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQP---ELVKTV-EKPNAFKCGTFNASPLSERYLATGDFEGK 94 (98)
Q Consensus 19 sl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l---~~~~e~-e~~~~~KC~TFgaSsl~~r~lAtGdf~G~ 94 (98)
..+-.|..+.|-|..+++++.|+ ..|.|+||+++.++. ...... .+...+.|..|-.. .+.||+|+.||.
T Consensus 380 ~H~~~V~~v~~~~~~~~~l~s~s---~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~---g~~l~sgs~Dg~ 453 (694)
T 3dm0_A 380 AHTDMVTAIATPIDNADIIVSAS---RDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSD---GQFALSGSWDGE 453 (694)
T ss_dssp CCSSCEEEEECCTTCCSEEEEEE---TTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTT---SSEEEEEETTSE
T ss_pred cCCceeEEEEecCCCCCEEEEEe---CCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCC---CCEEEEEeCCCc
Confidence 34567889999999888888775 468999999987542 223333 48889999999554 579999999999
Q ss_pred EEeC
Q psy9278 95 LQIW 98 (98)
Q Consensus 95 L~iw 98 (98)
+.||
T Consensus 454 v~vw 457 (694)
T 3dm0_A 454 LRLW 457 (694)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9998
No 100
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.14 E-value=0.0023 Score=50.52 Aligned_cols=70 Identities=16% Similarity=0.297 Sum_probs=56.1
Q ss_pred CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
.+-.+..+.|-|....+++.|. .|.|.||+++.++.. ...+ ++..+.|..|-.. .+.||+|+-||.+.||
T Consensus 54 ~~~~v~~~~~s~~~~~l~~~~~----dg~i~vw~~~~~~~~--~~~~~~~~~v~~~~~s~~---~~~l~~~~~dg~i~vw 124 (814)
T 3mkq_A 54 TETPVRAGKFIARKNWIIVGSD----DFRIRVFNYNTGEKV--VDFEAHPDYIRSIAVHPT---KPYVLSGSDDLTVKLW 124 (814)
T ss_dssp CSSCEEEEEEEGGGTEEEEEET----TSEEEEEETTTCCEE--EEEECCSSCEEEEEECSS---SSEEEEEETTSEEEEE
T ss_pred CCCcEEEEEEeCCCCEEEEEeC----CCeEEEEECCCCcEE--EEEecCCCCEEEEEEeCC---CCEEEEEcCCCEEEEE
Confidence 3456889999999887777663 799999999888643 3333 7788999999654 4689999999999998
No 101
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=97.13 E-value=0.0022 Score=46.54 Aligned_cols=72 Identities=4% Similarity=0.112 Sum_probs=51.9
Q ss_pred cceeeeeeecCCccEEEEccccCCcccEEEEEecCCc---------eeEEEEec-cc------------CceeeeecCCC
Q psy9278 22 YQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQ---------PELVKTVE-KP------------NAFKCGTFNAS 79 (98)
Q Consensus 22 yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~---------l~~~~e~e-~~------------~~~KC~TFgaS 79 (98)
-.+..+.|=|....+++-| ..|.|.||+++.++ .+++.+++ +. .++.|..|-..
T Consensus 29 ~~V~~v~~s~~g~~la~g~----~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~ 104 (447)
T 3dw8_B 29 DIISTVEFNHSGELLATGD----KGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ 104 (447)
T ss_dssp GSEEEEEECSSSSEEEEEE----TTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred CcEEEEEECCCCCEEEEEc----CCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCC
Confidence 4688999999766655544 47999999998765 33455554 33 67899998654
Q ss_pred CCCCceEEEeecCceEEeC
Q psy9278 80 PLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 80 sl~~r~lAtGdf~G~L~iw 98 (98)
. ....|++|+.||.+.||
T Consensus 105 ~-~~~~l~s~s~d~~i~iw 122 (447)
T 3dw8_B 105 K-NAAQFLLSTNDKTIKLW 122 (447)
T ss_dssp C-SSSEEEEEECSSCEEEE
T ss_pred C-CcceEEEeCCCCeEEEE
Confidence 2 12689999999999998
No 102
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=97.13 E-value=0.0022 Score=48.02 Aligned_cols=69 Identities=12% Similarity=0.290 Sum_probs=54.0
Q ss_pred CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEe-cccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTV-EKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~-e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
+..+.++.|-|....+++.| ..|.|.||++..++.. ..+ .+...+.|..|... ...||+|+-||.+.||
T Consensus 338 ~~~v~~v~~~~~g~~l~s~s----~D~~i~vwd~~~~~~~--~~~~~h~~~v~~l~~~~~---~~~l~sgs~D~~i~vW 407 (410)
T 1vyh_C 338 DNWVRGVLFHSGGKFILSCA----DDKTLRVWDYKNKRCM--KTLNAHEHFVTSLDFHKT---APYVVTGSVDQTVKVW 407 (410)
T ss_dssp SSCEEEEEECSSSSCEEEEE----TTTEEEEECCTTSCCC--EEEECCSSCEEEEEECSS---SSCEEEEETTSEEEEE
T ss_pred CCcEEEEEEcCCCCEEEEEe----CCCeEEEEECCCCceE--EEEcCCCCcEEEEEEcCC---CCEEEEEeCCCcEEEE
Confidence 45678899999877777655 5799999999877643 233 36778999999665 3589999999999998
No 103
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=97.12 E-value=0.0026 Score=52.02 Aligned_cols=75 Identities=8% Similarity=0.181 Sum_probs=58.4
Q ss_pred CCcceeeeeeecCC-ccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEe
Q psy9278 20 LDYQLFDCKWMPCS-AKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQI 97 (98)
Q Consensus 20 l~yT~fD~kWIP~S-ArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~i 97 (98)
..-.+.++.|-|.. .++++.|+ ..|.|.||+++.++...+.... +..++.|..|-... ..+.||+|+.||.+.|
T Consensus 52 h~~~V~~l~~s~~~~~~~l~s~s---~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~-~~~~l~sgs~dg~I~v 127 (753)
T 3jro_A 52 HEGPVWRVDWAHPKFGTILASCS---YDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHE-YGPLLLVASSDGKVSV 127 (753)
T ss_dssp CSSCEEEEEECCTTSCSEEEEEE---TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGG-GCSEEEEEETTSEEEE
T ss_pred CcCceEEEEecCCCCCCEEEEEe---CCCeEEEEECCCCcccccccccCCCCCeEEEEECCCC-CCCEEEEEeCCCcEEE
Confidence 35678999999873 44555543 4799999999999877777665 88899999995441 1468999999999999
Q ss_pred C
Q psy9278 98 W 98 (98)
Q Consensus 98 w 98 (98)
|
T Consensus 128 w 128 (753)
T 3jro_A 128 V 128 (753)
T ss_dssp E
T ss_pred E
Confidence 8
No 104
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=97.11 E-value=0.0025 Score=46.25 Aligned_cols=73 Identities=22% Similarity=0.449 Sum_probs=54.0
Q ss_pred cCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCce-----eEEEEeccc----------CceeeeecCCCCCCC
Q psy9278 19 SLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQP-----ELVKTVEKP----------NAFKCGTFNASPLSE 83 (98)
Q Consensus 19 sl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l-----~~~~e~e~~----------~~~KC~TFgaSsl~~ 83 (98)
.....+..+.|-|...++++.|. ..|.|.||++..+++ ..+..-+.+ .++.|..|-.. .
T Consensus 224 ~~~~~v~~~~~~p~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---g 297 (447)
T 3dw8_B 224 ELTEVITAAEFHPNSCNTFVYSS---SKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHS---G 297 (447)
T ss_dssp GCCCCEEEEEECSSCTTEEEEEE---TTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTT---S
T ss_pred ccCcceEEEEECCCCCcEEEEEe---CCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCC---C
Confidence 34567899999999866666664 478999999998875 333322211 38999999653 5
Q ss_pred ceEEEeecCceEEeC
Q psy9278 84 RYLATGDFEGKLQIW 98 (98)
Q Consensus 84 r~lAtGdf~G~L~iw 98 (98)
+.||+|+. |.+.||
T Consensus 298 ~~l~~~~~-~~v~iw 311 (447)
T 3dw8_B 298 RYMMTRDY-LSVKVW 311 (447)
T ss_dssp SEEEEEES-SEEEEE
T ss_pred CEEEEeeC-CeEEEE
Confidence 78999999 999998
No 105
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=97.07 E-value=0.0022 Score=50.66 Aligned_cols=71 Identities=20% Similarity=0.325 Sum_probs=55.4
Q ss_pred CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEe------cccCceeeeecCCCCCCCceEEEeecCce
Q psy9278 21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTV------EKPNAFKCGTFNASPLSERYLATGDFEGK 94 (98)
Q Consensus 21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~------e~~~~~KC~TFgaSsl~~r~lAtGdf~G~ 94 (98)
.-.++.+.|-|....+++.| ..|.|+||++..++....-+. .+..++.|..|-.. .+.||+|+.||.
T Consensus 190 ~~~V~~v~fspdg~~las~s----~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spd---g~~l~s~s~D~~ 262 (611)
T 1nr0_A 190 TKFVHSVRYNPDGSLFASTG----GDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPD---GTKIASASADKT 262 (611)
T ss_dssp SSCEEEEEECTTSSEEEEEE----TTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTT---SSEEEEEETTSE
T ss_pred cCceEEEEECCCCCEEEEEE----CCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCC---CCEEEEEeCCCe
Confidence 45688999999887777665 689999999988765332211 46778999999553 478999999999
Q ss_pred EEeC
Q psy9278 95 LQIW 98 (98)
Q Consensus 95 L~iw 98 (98)
+.||
T Consensus 263 v~lW 266 (611)
T 1nr0_A 263 IKIW 266 (611)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9998
No 106
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=97.06 E-value=0.0024 Score=48.28 Aligned_cols=68 Identities=9% Similarity=0.223 Sum_probs=52.0
Q ss_pred CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
+-.+..+.|=|....+++-| ..|.|.||++++..+ +.++ +..++.|..|-+. .+.||+|+-||.+.||
T Consensus 16 ~~~V~~~a~spdg~~las~~----~d~~v~iWd~~~~~~---~~l~gh~~~V~~l~fspd---g~~las~~~d~~i~vW 84 (577)
T 2ymu_A 16 SSSVRGVAFSPDGQTIASAS----DDKTVKLWNRNGQLL---QTLTGHSSSVWGVAFSPD---GQTIASASDDKTVKLW 84 (577)
T ss_dssp SSCEEEEEECTTSSCEEEEE----TTSEEEEECTTSCEE---EEEECCSSCEEEEEECTT---SSEEEEEETTSCEEEE
T ss_pred CCcEEEEEECCCCCEEEEEe----CCCEEEEEECCCCEE---EEEeCCCCCEEEEEECCC---CCEEEEEeCCCEEEEE
Confidence 45688899999776655544 468899999765433 3343 7889999999543 5789999999999998
No 107
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=97.04 E-value=0.0029 Score=50.35 Aligned_cols=71 Identities=10% Similarity=0.164 Sum_probs=55.1
Q ss_pred CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
..-.+.++.|-|....+++-| ..|.|+||++..++....- ..+...+.|..|-.. .+.||+|+.||.+.||
T Consensus 429 h~~~v~~v~~s~~g~~l~sgs----~Dg~v~vwd~~~~~~~~~~-~~h~~~v~~~~~s~~---~~~l~s~s~D~~i~iw 499 (694)
T 3dm0_A 429 HSHFVEDVVLSSDGQFALSGS----WDGELRLWDLAAGVSTRRF-VGHTKDVLSVAFSLD---NRQIVSASRDRTIKLW 499 (694)
T ss_dssp CSSCEEEEEECTTSSEEEEEE----TTSEEEEEETTTTEEEEEE-ECCSSCEEEEEECTT---SSCEEEEETTSCEEEE
T ss_pred CCCcEEEEEECCCCCEEEEEe----CCCcEEEEECCCCcceeEE-eCCCCCEEEEEEeCC---CCEEEEEeCCCEEEEE
Confidence 345688999999876666554 5799999999887543221 247888999999554 5789999999999998
No 108
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.99 E-value=0.002 Score=50.82 Aligned_cols=71 Identities=8% Similarity=0.195 Sum_probs=54.8
Q ss_pred CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
..-.+..+.|=|....+++.+ ..|.|.||+++.++....-+ .++.++.|..|-.. .+.||+|+-||.+.||
T Consensus 12 h~~~v~~i~~sp~~~~la~~~----~~g~v~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~---~~~l~~~~~dg~i~vw 82 (814)
T 3mkq_A 12 RSDRVKGIDFHPTEPWVLTTL----YSGRVEIWNYETQVEVRSIQ-VTETPVRAGKFIAR---KNWIIVGSDDFRIRVF 82 (814)
T ss_dssp ECSCEEEEEECSSSSEEEEEE----TTSEEEEEETTTTEEEEEEE-CCSSCEEEEEEEGG---GTEEEEEETTSEEEEE
T ss_pred CCCceEEEEECCCCCEEEEEe----CCCEEEEEECCCCceEEEEe-cCCCcEEEEEEeCC---CCEEEEEeCCCeEEEE
Confidence 345688999999876655554 47999999998876433222 37889999999664 4689999999999998
No 109
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=96.95 E-value=0.0033 Score=46.83 Aligned_cols=74 Identities=14% Similarity=0.169 Sum_probs=54.7
Q ss_pred cCCcceeeeeeecC-------CccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeec
Q psy9278 19 SLDYQLFDCKWMPC-------SAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDF 91 (98)
Q Consensus 19 sl~yT~fD~kWIP~-------SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf 91 (98)
.....|.++.|-|. ..++++-|+ ..+.++||++..+... ..-..+..++.|..|-.. ..+.||+|+.
T Consensus 134 gH~~~v~~v~~~p~~~~~~~~d~~~las~s---~D~tv~~Wd~~~~~~~-~~~~~~~~~v~~v~~~p~--~~~~l~~~~~ 207 (393)
T 4gq1_A 134 GHHNFVNDIDIADVYSADNRLAEQVIASVG---DDCTLIIWRLTDEGPI-LAGYPLSSPGISVQFRPS--NPNQLIVGER 207 (393)
T ss_dssp SCSSCEEEEEEEEEECTTCSEEEEEEEEEE---TTSEEEEEEEETTEEE-EEEEECSSCEEEEEEETT--EEEEEEEEET
T ss_pred CCCCceEEEEEccccccccCCCCCEEEEEE---CCCeEEEEECCCCcee-eeecCCCCCcEEEEECCC--CCceEEecCC
Confidence 44567999999984 345666654 4789999999776532 333456778899999443 3568999999
Q ss_pred CceEEeC
Q psy9278 92 EGKLQIW 98 (98)
Q Consensus 92 ~G~L~iw 98 (98)
||.+.||
T Consensus 208 d~~v~~w 214 (393)
T 4gq1_A 208 NGNIRIF 214 (393)
T ss_dssp TSEEEEE
T ss_pred CCEEEEE
Confidence 9999998
No 110
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=96.86 E-value=0.0021 Score=49.73 Aligned_cols=77 Identities=9% Similarity=0.076 Sum_probs=56.0
Q ss_pred CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCC-----c----eeEEEEe-cccCceeeeecCCCCCCCceEEEe
Q psy9278 20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDG-----Q----PELVKTV-EKPNAFKCGTFNASPLSERYLATG 89 (98)
Q Consensus 20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~-----~----l~~~~e~-e~~~~~KC~TFgaSsl~~r~lAtG 89 (98)
+...+.++.|=|....+++........|.|+||+++.+ + +..+... .+...+.|..|-.. ....||+|
T Consensus 91 ~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~--~~~~las~ 168 (434)
T 2oit_A 91 MKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPT--VPSMVAVC 168 (434)
T ss_dssp CSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSS--CTTEEEEE
T ss_pred CCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCC--CCCEEEEE
Confidence 45569999999998777764333457899999999754 1 1122322 25778999999654 25689999
Q ss_pred ecCceEEeC
Q psy9278 90 DFEGKLQIW 98 (98)
Q Consensus 90 df~G~L~iw 98 (98)
+-||.+.||
T Consensus 169 s~Dg~v~iw 177 (434)
T 2oit_A 169 LADGSIAVL 177 (434)
T ss_dssp ETTSCEEEE
T ss_pred ECCCeEEEE
Confidence 999999998
No 111
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=96.81 E-value=0.005 Score=51.53 Aligned_cols=70 Identities=16% Similarity=0.415 Sum_probs=55.6
Q ss_pred CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEe-cccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTV-EKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~-e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
..-.++.+.|-|....+++.| ..|.|.||++..++.. ..+ .+..++.|..|-.. .+.||+|+-||.+.||
T Consensus 614 h~~~v~~~~~s~~~~~l~s~~----~d~~i~vw~~~~~~~~--~~~~~h~~~v~~~~~s~~---~~~l~s~~~d~~v~vw 684 (1249)
T 3sfz_A 614 HTDAVYHACFSQDGQRIASCG----ADKTLQVFKAETGEKL--LDIKAHEDEVLCCAFSSD---DSYIATCSADKKVKIW 684 (1249)
T ss_dssp CSSCEEEEEECTTSSEEEEEE----TTSCEEEEETTTCCEE--EEECCCSSCEEEEEECTT---SSEEEEEETTSEEEEE
T ss_pred ccccEEEEEECCCCCEEEEEe----CCCeEEEEECCCCCEE--EEeccCCCCEEEEEEecC---CCEEEEEeCCCeEEEE
Confidence 345688999999877666555 6789999999888643 333 37889999999554 4799999999999998
No 112
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=96.74 E-value=0.0074 Score=44.87 Aligned_cols=63 Identities=19% Similarity=0.609 Sum_probs=38.4
Q ss_pred ceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 23 QLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 23 T~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
.+..+.| +.++++.|. ..|.|.||+++.++. +.+++ +..++.|..| ..+.||+|+.||.+.||
T Consensus 298 ~v~~~~~---~~~~l~~g~---~dg~i~iwd~~~~~~--~~~~~~h~~~v~~~~~-----~~~~l~sg~~dg~i~vw 361 (435)
T 1p22_A 298 GIACLQY---RDRLVVSGS---SDNTIRLWDIECGAC--LRVLEGHEELVRCIRF-----DNKRIVSGAYDGKIKVW 361 (435)
T ss_dssp CEEEEEE---ETTEEEEEE---TTSCEEEEETTTCCE--EEEECCCSSCEEEEEC-----CSSEEEEEETTSCEEEE
T ss_pred cEEEEEe---CCCEEEEEe---CCCeEEEEECCCCCE--EEEEeCCcCcEEEEEe-----cCCEEEEEeCCCcEEEE
Confidence 3444444 334555553 467777777776643 33333 5667777777 24567888888877776
No 113
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=96.68 E-value=0.011 Score=41.03 Aligned_cols=68 Identities=18% Similarity=0.315 Sum_probs=52.1
Q ss_pred CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
.-.+..+.|-|....|++-| ..|.|.||+++.++ .+...+....+.+..|-. ++++++|.-||.+.||
T Consensus 215 ~~~v~~~~~s~~~~~l~s~s----~Dg~i~iwd~~~~~--~~~~~~~~~~v~~~~~~~----~~~~~~~~~d~~i~iw 282 (340)
T 4aow_A 215 TGYLNTVTVSPDGSLCASGG----KDGQAMLWDLNEGK--HLYTLDGGDIINALCFSP----NRYWLCAATGPSIKIW 282 (340)
T ss_dssp SSCEEEEEECTTSSEEEEEE----TTCEEEEEETTTTE--EEEEEECSSCEEEEEECS----SSSEEEEEETTEEEEE
T ss_pred CCcEEEEEECCCCCEEEEEe----CCCeEEEEEeccCc--eeeeecCCceEEeeecCC----CCceeeccCCCEEEEE
Confidence 34678889999876666554 47899999998764 556677778899988844 4567788889999987
No 114
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=96.62 E-value=0.01 Score=44.13 Aligned_cols=57 Identities=21% Similarity=0.464 Sum_probs=43.3
Q ss_pred CccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 33 SAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 33 SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
..+.++.|. ..|.|+||+++.++....-. .+..++.|..| ..+.||+|+.||.+.||
T Consensus 142 d~~~l~~g~---~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~-----~~~~l~sg~~dg~i~vw 198 (435)
T 1p22_A 142 DDQKIVSGL---RDNTIKIWDKNTLECKRILT-GHTGSVLCLQY-----DERVIITGSSDSTVRVW 198 (435)
T ss_dssp CSSEEEEEE---SSSCEEEEESSSCCEEEEEC-CCSSCEEEEEC-----CSSEEEEEETTSCEEEE
T ss_pred CCCEEEEEe---CCCeEEEEeCCCCeEEEEEc-CCCCcEEEEEE-----CCCEEEEEcCCCeEEEE
Confidence 445566663 57999999998876543322 37789999999 35689999999999998
No 115
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=96.62 E-value=0.017 Score=39.97 Aligned_cols=72 Identities=14% Similarity=0.158 Sum_probs=53.4
Q ss_pred CcceeeeeeecCCccEEEEccccCCcccEEEEEec--CCceeEEEEecccCceeeeecCCCCCCCceEEEeec-CceEEe
Q psy9278 21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEIN--DGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDF-EGKLQI 97 (98)
Q Consensus 21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~--~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf-~G~L~i 97 (98)
...+..+.|-|...++++.+.. .|.|.+|+++ .++++.+.++..+....+..|-.. .+.|++++. +|.+.+
T Consensus 37 ~~~~~~~~~spdg~~l~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d---g~~l~~~~~~~~~i~~ 110 (343)
T 1ri6_A 37 PGQVQPMVVSPDKRYLYVGVRP---EFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQ---GQFVFVGSYNAGNVSV 110 (343)
T ss_dssp SSCCCCEEECTTSSEEEEEETT---TTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTT---SSEEEEEETTTTEEEE
T ss_pred CCCCceEEECCCCCEEEEeecC---CCeEEEEEecCCCCceeeccccccCCCCcEEEEcCC---CCEEEEEecCCCeEEE
Confidence 4467889999988777776642 4899999998 788988888876666777777443 355666555 788888
Q ss_pred C
Q psy9278 98 W 98 (98)
Q Consensus 98 w 98 (98)
|
T Consensus 111 ~ 111 (343)
T 1ri6_A 111 T 111 (343)
T ss_dssp E
T ss_pred E
Confidence 7
No 116
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=96.59 E-value=0.009 Score=50.64 Aligned_cols=68 Identities=12% Similarity=0.248 Sum_probs=53.3
Q ss_pred CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
...+..+.|.| ...+++.+ ..|.|+||+++.+++ +..++.+..+.|..|-.. .+.||+|+-||.+.+|
T Consensus 58 ~~~V~~l~fsp-g~~L~S~s----~D~~v~lWd~~~~~~--~~~~~~~~~V~~v~~sp~---g~~l~sgs~dg~V~lw 125 (902)
T 2oaj_A 58 RSAIKEMRFVK-GIYLVVIN----AKDTVYVLSLYSQKV--LTTVFVPGKITSIDTDAS---LDWMLIGLQNGSMIVY 125 (902)
T ss_dssp CCCEEEEEEET-TTEEEEEE----TTCEEEEEETTTCSE--EEEEECSSCEEEEECCTT---CSEEEEEETTSCEEEE
T ss_pred CCCEEEEEEcC-CCEEEEEE----CcCeEEEEECCCCcE--EEEEcCCCCEEEEEECCC---CCEEEEEcCCCcEEEE
Confidence 45789999999 33455444 579999999988764 444557788999999654 4789999999999998
No 117
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=96.39 E-value=0.028 Score=38.85 Aligned_cols=71 Identities=8% Similarity=0.086 Sum_probs=52.6
Q ss_pred cceeeeeeecCCccEEEEccccCCcccEEEEEec--CCceeEEEEecccCceeeeecCCCCCCCceEEEee-cCceEEeC
Q psy9278 22 YQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEIN--DGQPELVKTVEKPNAFKCGTFNASPLSERYLATGD-FEGKLQIW 98 (98)
Q Consensus 22 yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~--~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGd-f~G~L~iw 98 (98)
..+.++.|-|....+++.+ ++.|.|.+|+++ .++++.+..++......+..|-+. .+.|++++ -+|.+.||
T Consensus 231 ~~~~~i~~s~dg~~l~v~~---~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~d---g~~l~~~~~~~~~v~v~ 304 (343)
T 1ri6_A 231 RWAADIHITPDGRHLYACD---RTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHS---GKYLIAAGQKSHHISVY 304 (343)
T ss_dssp CCEEEEEECTTSSEEEEEE---TTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTT---SSEEEEECTTTCEEEEE
T ss_pred CCccceEECCCCCEEEEEe---cCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCC---CCEEEEecCCCCeEEEE
Confidence 3566799999887666554 467899999998 677888888876555777777443 35677666 67999887
No 118
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=96.28 E-value=0.013 Score=49.74 Aligned_cols=72 Identities=14% Similarity=0.189 Sum_probs=56.3
Q ss_pred hhcCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEE
Q psy9278 17 EKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQ 96 (98)
Q Consensus 17 ~ksl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~ 96 (98)
...++..+..+.|=|... +++.|+ ..|.|+||+....++ +...++..++.|..|-. .+.||+|+-||.+.
T Consensus 13 ~~gh~~~V~~lafspdg~-~lAsgs---~Dg~I~lw~~~~~~~--~~~~~~~~~V~~l~fsp----g~~L~S~s~D~~v~ 82 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQN-LLAIAT---VTGEVHIYGQQQVEV--VIKLEDRSAIKEMRFVK----GIYLVVINAKDTVY 82 (902)
T ss_dssp EEECSSCEEEEEEETTTT-EEEEEE---TTSEEEEECSTTCEE--EEECSSCCCEEEEEEET----TTEEEEEETTCEEE
T ss_pred ccCCCCCcEEEEECCCCC-EEEEEe---CCCEEEEEeCCCcEE--EEEcCCCCCEEEEEEcC----CCEEEEEECcCeEE
Confidence 345677899999999874 555664 458999999876654 44456778999999965 34899999999999
Q ss_pred eC
Q psy9278 97 IW 98 (98)
Q Consensus 97 iw 98 (98)
||
T Consensus 83 lW 84 (902)
T 2oaj_A 83 VL 84 (902)
T ss_dssp EE
T ss_pred EE
Confidence 98
No 119
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=96.11 E-value=0.017 Score=42.29 Aligned_cols=72 Identities=11% Similarity=0.128 Sum_probs=49.5
Q ss_pred CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecc----------------------cCceeeeecC
Q psy9278 20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEK----------------------PNAFKCGTFN 77 (98)
Q Consensus 20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~----------------------~~~~KC~TFg 77 (98)
....++++.|-|....+++.+ ..|.|+||+++.+.......+.. ..+..+..|.
T Consensus 239 h~~~v~~~~~s~~~~~l~s~s----~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 314 (355)
T 3vu4_A 239 DRADVVDMKWSTDGSKLAVVS----DKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWI 314 (355)
T ss_dssp CCSCEEEEEECTTSCEEEEEE----TTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEES
T ss_pred CCCcEEEEEECCCCCEEEEEE----CCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEe
Confidence 456789999999987777766 46999999998875443332211 1111334454
Q ss_pred CCCCCCceEEEeecCceEEeC
Q psy9278 78 ASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 78 aSsl~~r~lAtGdf~G~L~iw 98 (98)
.. ...|++|.-||.+.+|
T Consensus 315 ~d---~~~l~~~~~dg~~~~~ 332 (355)
T 3vu4_A 315 SE---SSLVVVWPHTRMIETF 332 (355)
T ss_dssp SS---SEEEEEETTTTEEEEE
T ss_pred CC---CCEEEEEeCCCeEEEE
Confidence 33 5789999999999876
No 120
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=96.09 E-value=0.033 Score=46.64 Aligned_cols=73 Identities=15% Similarity=0.332 Sum_probs=56.1
Q ss_pred CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
.+-.+..+.|-|....+++.| ..|.|.||++..+++...-. .+..++.|..|-... ....+|+|+-||.+.+|
T Consensus 656 h~~~v~~~~~s~~~~~l~s~~----~d~~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~-~~~~l~sg~~d~~v~vw 728 (1249)
T 3sfz_A 656 HEDEVLCCAFSSDDSYIATCS----ADKKVKIWDSATGKLVHTYD-EHSEQVNCCHFTNKS-NHLLLATGSNDFFLKLW 728 (1249)
T ss_dssp CSSCEEEEEECTTSSEEEEEE----TTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECSSS-SCCEEEEEETTSCEEEE
T ss_pred CCCCEEEEEEecCCCEEEEEe----CCCeEEEEECCCCceEEEEc-CCCCcEEEEEEecCC-CceEEEEEeCCCeEEEE
Confidence 356788999999887666655 57889999999886433222 478899999996532 34589999999999998
No 121
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=96.02 E-value=0.033 Score=40.42 Aligned_cols=73 Identities=8% Similarity=0.131 Sum_probs=52.7
Q ss_pred cceeeeeeecCCccEEEEccccC----CcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEe
Q psy9278 22 YQLFDCKWMPCSAKFIVLGMKPK----GTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQI 97 (98)
Q Consensus 22 yT~fD~kWIP~SArfV~lG~~pr----gtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~i 97 (98)
-.+..+.|-|....+++.+.... +.|.|.+|+++.+++. ..+..+....+..|.+. .++-++++..+|.+.+
T Consensus 254 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~--g~~l~~~~~~~~~v~v 329 (433)
T 3bws_A 254 GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLI--DTIGPPGNKRHIVSGNT--ENKIYVSDMCCSKIEV 329 (433)
T ss_dssp SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEE--EEEEEEECEEEEEECSS--TTEEEEEETTTTEEEE
T ss_pred CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEE--eeccCCCCcceEEECCC--CCEEEEEecCCCEEEE
Confidence 34789999998876666553332 4789999999988653 34455557788888543 3456788899999998
Q ss_pred C
Q psy9278 98 W 98 (98)
Q Consensus 98 w 98 (98)
|
T Consensus 330 ~ 330 (433)
T 3bws_A 330 Y 330 (433)
T ss_dssp E
T ss_pred E
Confidence 7
No 122
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=95.92 E-value=0.042 Score=40.66 Aligned_cols=65 Identities=11% Similarity=0.225 Sum_probs=41.9
Q ss_pred CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
...+..+.| . .++++.|. ..|.|.||+++.++. +.+++ +..++.|..| ..++|++|+.||.+.+|
T Consensus 239 ~~~v~~~~~--~-~~~l~~~~---~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~-----~~~~l~~~~~d~~i~i~ 304 (445)
T 2ovr_B 239 VAAVRCVQY--D-GRRVVSGA---YDFMVKVWDPETETC--LHTLQGHTNRVYSLQF-----DGIHVVSGSLDTSIRVW 304 (445)
T ss_dssp SSCEEEEEE--C-SSCEEEEE---TTSCEEEEEGGGTEE--EEEECCCSSCEEEEEE-----CSSEEEEEETTSCEEEE
T ss_pred cccEEEEEE--C-CCEEEEEc---CCCEEEEEECCCCcE--eEEecCCCCceEEEEE-----CCCEEEEEeCCCeEEEE
Confidence 344556666 3 34444443 367888888877643 33443 5667888887 34578888888888877
No 123
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=95.89 E-value=0.048 Score=40.35 Aligned_cols=66 Identities=18% Similarity=0.364 Sum_probs=47.3
Q ss_pred CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
...+..+.|- .+.++.|+ ..|.|.+|+++.++....-. .+..++.|..| ..+.||+|+.||.+.+|
T Consensus 199 ~~~v~~~~~~---~~~l~s~s---~dg~i~~wd~~~~~~~~~~~-~~~~~v~~~~~-----~~~~l~~~~~dg~i~iw 264 (445)
T 2ovr_B 199 TSTVRCMHLH---EKRVVSGS---RDATLRVWDIETGQCLHVLM-GHVAAVRCVQY-----DGRRVVSGAYDFMVKVW 264 (445)
T ss_dssp SSCEEEEEEE---TTEEEEEE---TTSEEEEEESSSCCEEEEEE-CCSSCEEEEEE-----CSSCEEEEETTSCEEEE
T ss_pred CCcEEEEEec---CCEEEEEe---CCCEEEEEECCCCcEEEEEc-CCcccEEEEEE-----CCCEEEEEcCCCEEEEE
Confidence 4456677773 34455553 46899999998876543322 36778999998 24679999999999988
No 124
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=95.78 E-value=0.036 Score=41.19 Aligned_cols=76 Identities=16% Similarity=0.325 Sum_probs=53.3
Q ss_pred cCCcceeeeeee---cCCccEEEEccccCCcccEEEEEecCC--------ceeEEEEecccCceeeeecCCC--------
Q psy9278 19 SLDYQLFDCKWM---PCSAKFIVLGMKPKGTGSIQMYEINDG--------QPELVKTVEKPNAFKCGTFNAS-------- 79 (98)
Q Consensus 19 sl~yT~fD~kWI---P~SArfV~lG~~prgtG~iqIyeL~~~--------~l~~~~e~e~~~~~KC~TFgaS-------- 79 (98)
.++.-||.++|. |...++++.| ..+.|.||..... +...+.......+..+..+...
T Consensus 13 pl~~~p~~~~w~~~~~~~~~l~a~g----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (393)
T 4gq1_A 13 PLNVRPYTTTWCSQSPSCSNLLAIG----HDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLH 88 (393)
T ss_dssp CTTCCEEEEEECTTSGGGTTEEEEE----ESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC--
T ss_pred cCCCCCeEEEEeCCCCCCCCEEEEE----CCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCcccccccc
Confidence 567788999995 5667899999 4677999987543 3455555555555555554322
Q ss_pred ---------CCCCceEEEeecCceEEeC
Q psy9278 80 ---------PLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 80 ---------sl~~r~lAtGdf~G~L~iw 98 (98)
+...+.||+|.-|+.++||
T Consensus 89 ~~~~~~~~~~~~~~~las~~~d~~v~lw 116 (393)
T 4gq1_A 89 DGDGNVNSSPVYSLFLACVCQDNTVRLI 116 (393)
T ss_dssp --------CCEEEEEEEEEETTSCEEEE
T ss_pred CCCcceeecCCCCCEEEEEeCCCcEEEE
Confidence 2234579999999999998
No 125
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=95.68 E-value=0.053 Score=36.08 Aligned_cols=71 Identities=15% Similarity=0.164 Sum_probs=48.3
Q ss_pred cceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEE-EeecCceEEeC
Q psy9278 22 YQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLA-TGDFEGKLQIW 98 (98)
Q Consensus 22 yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lA-tGdf~G~L~iw 98 (98)
..+.++.|-|....+++.+....+...|-+++++.++++.+. ....+.+..|-+. .+.|+ +++.+|.+.||
T Consensus 85 ~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~spd---g~~l~~~~~~~~~~~l~ 156 (297)
T 2ojh_A 85 ICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMT---KNLPSYWHGWSPD---GKSFTYCGIRDQVFDIY 156 (297)
T ss_dssp CBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECC---SSSSEEEEEECTT---SSEEEEEEEETTEEEEE
T ss_pred ccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEee---cCCCccceEECCC---CCEEEEEECCCCceEEE
Confidence 567889999999888877755555666666666666654443 3344666666433 35666 88899988887
No 126
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=95.64 E-value=0.068 Score=38.19 Aligned_cols=68 Identities=10% Similarity=0.108 Sum_probs=50.8
Q ss_pred ceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceE-EEeecCceEEeC
Q psy9278 23 QLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYL-ATGDFEGKLQIW 98 (98)
Q Consensus 23 T~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~l-AtGdf~G~L~iw 98 (98)
.+..+.|-|...++++.|. ..|.|.+|++..+++ +..+.....+.+..|-.. .+.| ++|..+|.+.+|
T Consensus 33 ~~~~~~~s~dg~~l~~~~~---~d~~i~v~d~~~~~~--~~~~~~~~~v~~~~~spd---g~~l~~~~~~~~~v~v~ 101 (391)
T 1l0q_A 33 NPMGAVISPDGTKVYVANA---HSNDVSIIDTATNNV--IATVPAGSSPQGVAVSPD---GKQVYVTNMASSTLSVI 101 (391)
T ss_dssp SEEEEEECTTSSEEEEEEG---GGTEEEEEETTTTEE--EEEEECSSSEEEEEECTT---SSEEEEEETTTTEEEEE
T ss_pred CcceEEECCCCCEEEEECC---CCCeEEEEECCCCeE--EEEEECCCCccceEECCC---CCEEEEEECCCCEEEEE
Confidence 4789999999988877664 468999999988765 445555668888888543 3445 566677999887
No 127
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=95.32 E-value=0.11 Score=35.76 Aligned_cols=65 Identities=12% Similarity=0.214 Sum_probs=46.0
Q ss_pred ceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 23 QLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 23 T~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
.++.+.|-|...++++. .|.|.+|+++.+++. ..++......+..|-+. .+.|+++..+|.|.+|
T Consensus 242 ~~~~~~~s~dg~~l~~~------~~~v~~~d~~~~~~~--~~~~~~~~~~~~~~s~d---g~~l~~~~~~~~i~v~ 306 (337)
T 1pby_B 242 FYFSTAVNPAKTRAFGA------YNVLESFDLEKNASI--KRVPLPHSYYSVNVSTD---GSTVWLGGALGDLAAY 306 (337)
T ss_dssp CEEEEEECTTSSEEEEE------ESEEEEEETTTTEEE--EEEECSSCCCEEEECTT---SCEEEEESBSSEEEEE
T ss_pred ceeeEEECCCCCEEEEe------CCeEEEEECCCCcCc--ceecCCCceeeEEECCC---CCEEEEEcCCCcEEEE
Confidence 45668898977665544 489999999887653 44444555667777443 3578888889999987
No 128
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=95.23 E-value=0.026 Score=45.14 Aligned_cols=48 Identities=15% Similarity=0.366 Sum_probs=35.5
Q ss_pred cccEEEEEecCCceeEEEEec-c-cCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 46 TGSIQMYEINDGQPELVKTVE-K-PNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 46 tG~iqIyeL~~~~l~~~~e~e-~-~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
.|.|+||++..|++.. .++ + ...+-+..|-+. .+.||+|+.||++.||
T Consensus 304 DgTIkIWDl~tGk~l~--tL~gH~~~vvs~vafSPD---G~~LaSGS~D~TIklW 353 (356)
T 2w18_A 304 SGTIAIWDLLLGQCTA--LLPPVSDQHWSFVKWSGT---DSHLLAGQKDGNIFVY 353 (356)
T ss_dssp TSCEEEEETTTCSEEE--EECCC--CCCCEEEECSS---SSEEEEECTTSCEEEE
T ss_pred CCcEEEEECCCCcEEE--EecCCCCCeEEEEEECCC---CCEEEEEECCCcEEEe
Confidence 5789999999987443 343 3 233456788654 4689999999999998
No 129
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=95.21 E-value=0.048 Score=36.27 Aligned_cols=70 Identities=17% Similarity=0.138 Sum_probs=50.7
Q ss_pred CcceeeeeeecCCccEEEEccccCCcccEEEEEecC-CceeEEEEecccCceeeeecCCCCCCCceEEEee--cCceEEe
Q psy9278 21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEIND-GQPELVKTVEKPNAFKCGTFNASPLSERYLATGD--FEGKLQI 97 (98)
Q Consensus 21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~-~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGd--f~G~L~i 97 (98)
.-.+..+.|-|....+++.+ .|.|.+|+++. +++..+.+......+.|..|-+. .+.||++. -++...|
T Consensus 41 ~~~v~~~~~spdg~~l~~~~-----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spd---g~~l~~~~~~~~~~~~l 112 (297)
T 2ojh_A 41 PELFEAPNWSPDGKYLLLNS-----EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPD---GALYAISDKVEFGKSAI 112 (297)
T ss_dssp SSCCEEEEECTTSSEEEEEE-----TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTT---SSEEEEEECTTTSSCEE
T ss_pred CcceEeeEECCCCCEEEEEc-----CCeEEEEeCCCCCCceEeccccccccccceEECCC---CCEEEEEEeCCCCcceE
Confidence 45688999999988777642 57999999999 88776665544567778888543 46788887 3355555
Q ss_pred C
Q psy9278 98 W 98 (98)
Q Consensus 98 w 98 (98)
|
T Consensus 113 ~ 113 (297)
T 2ojh_A 113 Y 113 (297)
T ss_dssp E
T ss_pred E
Confidence 4
No 130
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=95.20 E-value=0.14 Score=36.52 Aligned_cols=73 Identities=8% Similarity=0.014 Sum_probs=51.3
Q ss_pred CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
...+..+.|-|...++++.+ ...+.|.|.+|++..++. +..++....+.+..|-+. .++-++++..+|.+.+|
T Consensus 199 ~~~~~~~~~~~~g~~l~~~~-~~~~~~~v~~~d~~~~~~--~~~~~~~~~~~~~~~s~d--g~~l~~s~~~d~~v~v~ 271 (391)
T 1l0q_A 199 EAAPSGIAVNPEGTKAYVTN-VDKYFNTVSMIDTGTNKI--TARIPVGPDPAGIAVTPD--GKKVYVALSFXNTVSVI 271 (391)
T ss_dssp SSEEEEEEECTTSSEEEEEE-ECSSCCEEEEEETTTTEE--EEEEECCSSEEEEEECTT--SSEEEEEETTTTEEEEE
T ss_pred CCCccceEECCCCCEEEEEe-cCcCCCcEEEEECCCCeE--EEEEecCCCccEEEEccC--CCEEEEEcCCCCEEEEE
Confidence 34678889999876666554 334689999999988754 455555556677777443 23344788999999987
No 131
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=95.19 E-value=0.17 Score=36.18 Aligned_cols=69 Identities=12% Similarity=0.096 Sum_probs=49.6
Q ss_pred eeeeeeecCCccEEEEccccCC-cccEEEEEec--CCceeEEEEecccCceeeeecCCCCCCCceEEEee-cCceEEeC
Q psy9278 24 LFDCKWMPCSAKFIVLGMKPKG-TGSIQMYEIN--DGQPELVKTVEKPNAFKCGTFNASPLSERYLATGD-FEGKLQIW 98 (98)
Q Consensus 24 ~fD~kWIP~SArfV~lG~~prg-tG~iqIyeL~--~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGd-f~G~L~iw 98 (98)
+.++.|=|....+++.. ++ .+.|.||+++ .++++.+..++......+..|-+. .+.|++++ .++.+.||
T Consensus 261 ~~~i~~spdg~~l~v~~---~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spd---g~~l~~~~~~~~~v~v~ 333 (361)
T 3scy_A 261 SGDIHLSPDGKYLYASN---RLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPN---GKYLLVACRDTNVIQIF 333 (361)
T ss_dssp EEEEEECTTSSEEEEEE---CSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTT---SCEEEEEETTTTEEEEE
T ss_pred cccEEECCCCCEEEEEC---CCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCC---CCEEEEEECCCCCEEEE
Confidence 56888999876665544 34 6889999996 678888888775445566677433 35677777 67888875
No 132
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=95.18 E-value=0.05 Score=39.46 Aligned_cols=77 Identities=6% Similarity=-0.026 Sum_probs=53.7
Q ss_pred cCCcceeeee---eecCCccEEEEccccC----------CcccEEEEEecC--CceeEEEEecccCceeeeecCCCCCCC
Q psy9278 19 SLDYQLFDCK---WMPCSAKFIVLGMKPK----------GTGSIQMYEIND--GQPELVKTVEKPNAFKCGTFNASPLSE 83 (98)
Q Consensus 19 sl~yT~fD~k---WIP~SArfV~lG~~pr----------gtG~iqIyeL~~--~~l~~~~e~e~~~~~KC~TFgaSsl~~ 83 (98)
...--+|+.. |-|....+.++..... ..|.+.||.++. +.++.+..++.+....|..|-. ..
T Consensus 58 ~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~---~~ 134 (433)
T 3bws_A 58 DKNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTGFQPKSVRFID---NT 134 (433)
T ss_dssp ETTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECSSCBCCCEESS---SS
T ss_pred ccCCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCCCCceEEEEeC---CC
Confidence 3455678888 8887655554432222 123446777655 7889999888777777888854 56
Q ss_pred ceEEEeecCceEEeC
Q psy9278 84 RYLATGDFEGKLQIW 98 (98)
Q Consensus 84 r~lAtGdf~G~L~iw 98 (98)
+.+++++-+|.+.+|
T Consensus 135 ~~~~~~~~~~~i~~~ 149 (433)
T 3bws_A 135 RLAIPLLEDEGMDVL 149 (433)
T ss_dssp EEEEEBTTSSSEEEE
T ss_pred eEEEEeCCCCeEEEE
Confidence 788999999999987
No 133
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=95.10 E-value=0.17 Score=36.20 Aligned_cols=72 Identities=10% Similarity=0.079 Sum_probs=50.2
Q ss_pred cceeeeeeecCCccEEEEccccCCcccEEEEEecC--CceeEEEEecc-cCceeeeecCCCCCCCceEEEeec-CceEEe
Q psy9278 22 YQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEIND--GQPELVKTVEK-PNAFKCGTFNASPLSERYLATGDF-EGKLQI 97 (98)
Q Consensus 22 yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~--~~l~~~~e~e~-~~~~KC~TFgaSsl~~r~lAtGdf-~G~L~i 97 (98)
..|..+.|=|....+++.+....+.|.+++|.++. |+++.+.+... .......+| ..+.|++.++ +|.+.+
T Consensus 50 ~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~-----dg~~l~~~~~~~~~v~~ 124 (361)
T 3scy_A 50 ANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT-----NGKNIVTANYSGGSITV 124 (361)
T ss_dssp SCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE-----CSSEEEEEETTTTEEEE
T ss_pred CCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE-----CCCEEEEEECCCCEEEE
Confidence 45566778898877777776555779999999987 78888887752 333344455 3456777775 677877
Q ss_pred C
Q psy9278 98 W 98 (98)
Q Consensus 98 w 98 (98)
|
T Consensus 125 ~ 125 (361)
T 3scy_A 125 F 125 (361)
T ss_dssp E
T ss_pred E
Confidence 6
No 134
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=95.02 E-value=0.14 Score=36.20 Aligned_cols=71 Identities=8% Similarity=0.195 Sum_probs=50.9
Q ss_pred cceeeeeeecCCccEEEEccccCCcccEEEEEec-CCceeEEEEecc-cCceeeeecCCCCCCCceEEEeecC-ceEEeC
Q psy9278 22 YQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEIN-DGQPELVKTVEK-PNAFKCGTFNASPLSERYLATGDFE-GKLQIW 98 (98)
Q Consensus 22 yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~-~~~l~~~~e~e~-~~~~KC~TFgaSsl~~r~lAtGdf~-G~L~iw 98 (98)
..+.++.|=|....+++.+ ++.+.|.||+++ .++++.+..+.. ........|-+. .+.|++++.+ +.+.||
T Consensus 240 ~~~~~i~~spdG~~l~v~~---~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spd---g~~l~v~~~~~~~v~v~ 313 (347)
T 3hfq_A 240 NGAAAIRLSHDGHFLYVSN---RGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPT---EAFVVVVNQNTDNATLY 313 (347)
T ss_dssp CEEEEEEECTTSCEEEEEE---ETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTT---SSEEEEEETTTTEEEEE
T ss_pred CcceeEEECCCCCEEEEEe---CCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCC---CCEEEEEEcCCCcEEEE
Confidence 4577899999987665554 357899999997 557888887764 334566777433 4678888765 888876
No 135
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=94.06 E-value=0.23 Score=35.16 Aligned_cols=72 Identities=8% Similarity=0.114 Sum_probs=49.7
Q ss_pred cceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec-ccCceeeeecCCCCCCCceEEEee-cCceEEeC
Q psy9278 22 YQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE-KPNAFKCGTFNASPLSERYLATGD-FEGKLQIW 98 (98)
Q Consensus 22 yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e-~~~~~KC~TFgaSsl~~r~lAtGd-f~G~L~iw 98 (98)
..|..+.|=|... +++++. ..+.|.|.+|+++.++++.+.... .........|-+. .+.|++++ -+|.+.+|
T Consensus 40 ~~p~~~a~spdg~-l~~~~~-~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spd---g~~l~~~~~~~~~v~v~ 113 (347)
T 3hfq_A 40 QNPTYLALSAKDC-LYSVDK-EDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEA---RQLVYSANYHKGTAEVM 113 (347)
T ss_dssp SCCCCEEECTTCE-EEEEEE-ETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETT---TTEEEEEETTTTEEEEE
T ss_pred CCcceEEEccCCe-EEEEEe-cCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCC---CCEEEEEeCCCCEEEEE
Confidence 4566778888765 555543 356799999999999988887743 3444555556333 45688877 56888887
No 136
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=94.05 E-value=0.45 Score=34.62 Aligned_cols=71 Identities=11% Similarity=0.102 Sum_probs=49.1
Q ss_pred cceeeeeeecCCccEEEEccccCCcccEEEEEec-CCceeEEEEecc---cCceeeeecCCCCCCCceEEEee-cCceEE
Q psy9278 22 YQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEIN-DGQPELVKTVEK---PNAFKCGTFNASPLSERYLATGD-FEGKLQ 96 (98)
Q Consensus 22 yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~-~~~l~~~~e~e~---~~~~KC~TFgaSsl~~r~lAtGd-f~G~L~ 96 (98)
-.++.+.|-|...++++.. ++.+.|.+|+++ .|+++.+.+++- ..+.....|-+. .+.|++.+ .++.+.
T Consensus 145 ~~~~~~~~spdG~~l~~~~---~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spd---g~~l~v~~~~~~~v~ 218 (365)
T 1jof_A 145 TGIHGMVFDPTETYLYSAD---LTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPT---GNYLYALMEAGNRIC 218 (365)
T ss_dssp CCEEEEEECTTSSEEEEEE---TTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTT---SSEEEEEETTTTEEE
T ss_pred CcceEEEECCCCCEEEEEc---CCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCC---CCEEEEEECCCCeEE
Confidence 3578899999886554432 467899999999 788887776652 345677777433 35666655 567777
Q ss_pred eC
Q psy9278 97 IW 98 (98)
Q Consensus 97 iw 98 (98)
+|
T Consensus 219 v~ 220 (365)
T 1jof_A 219 EY 220 (365)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 137
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=93.96 E-value=0.22 Score=42.28 Aligned_cols=68 Identities=10% Similarity=0.179 Sum_probs=53.5
Q ss_pred cceeeeeeecCCccEEEEccccCCcccEEEEEecCCce-----eEEEEec-----ccCceeeeecCCCCCCCceEEEeec
Q psy9278 22 YQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQP-----ELVKTVE-----KPNAFKCGTFNASPLSERYLATGDF 91 (98)
Q Consensus 22 yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l-----~~~~e~e-----~~~~~KC~TFgaSsl~~r~lAtGdf 91 (98)
.++.++.|=|..-.+++.| ..|.|+||+++.+++ -++..++ +...+.|..|-. +. ||++..
T Consensus 130 ~sv~svafSPDG~~LAsgs----~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSP----dg-Laass~ 200 (588)
T 2j04_A 130 RTYHCFEWNPIESSIVVGN----EDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYE----DV-LVAALS 200 (588)
T ss_dssp TCEEEEEECSSSSCEEEEE----TTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEET----TE-EEEEET
T ss_pred ccEEEEEEcCCCCEEEEEc----CCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcC----Cc-EEEEeC
Confidence 4688999999987777766 489999999999875 2445432 456899998854 33 999999
Q ss_pred CceEEeC
Q psy9278 92 EGKLQIW 98 (98)
Q Consensus 92 ~G~L~iw 98 (98)
|+.+.+|
T Consensus 201 D~tVrlW 207 (588)
T 2j04_A 201 NNSVFSM 207 (588)
T ss_dssp TCCEEEE
T ss_pred CCeEEEE
Confidence 9999998
No 138
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=93.96 E-value=0.11 Score=40.14 Aligned_cols=78 Identities=17% Similarity=0.268 Sum_probs=57.6
Q ss_pred CCCccceehhhhhcCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCce
Q psy9278 6 KLDKPQIICLVEKSLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERY 85 (98)
Q Consensus 6 ~~~kPQIIehi~ksl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~ 85 (98)
.|+--|||..+++-+..-+|.+.+.|...+++..+.. .|.++||.+++++.+.+... +...+....|- +++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~DG~~la~~s~~---~g~~~lw~~~~g~~~~lt~~-~~~~~~~~~~s----pd~~ 77 (582)
T 3o4h_A 6 PVEFSRIVRDVERLIAVEKYSLQGVVDGDKLLVVGFS---EGSVNAYLYDGGETVKLNRE-PINSVLDPHYG----VGRV 77 (582)
T ss_dssp CCCHHHHHHHHHHHHHSCEEEEEEEETTTEEEEEEEE---TTEEEEEEEETTEEEECCSS-CCSEECEECTT----CSEE
T ss_pred eccHHHHHHHHHHHhccchheeecCCCCCeEEEEEcc---CCceeEEEEcCCCcEeeecc-cccccccccCC----CCeE
Confidence 4666788888888778889999999999998887743 67899999988887655432 11355665553 2378
Q ss_pred EEEeec
Q psy9278 86 LATGDF 91 (98)
Q Consensus 86 lAtGdf 91 (98)
+++++.
T Consensus 78 l~~~~~ 83 (582)
T 3o4h_A 78 ILVRDV 83 (582)
T ss_dssp EEEEEC
T ss_pred EEEecc
Confidence 888887
No 139
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=93.62 E-value=0.22 Score=39.24 Aligned_cols=74 Identities=11% Similarity=0.152 Sum_probs=51.9
Q ss_pred CcceeeeeeecCCccEEEEcc-ccCCcccEEEEEecCCceeEEEEecccC---ceeeeecCCCCCCCceEEEeecCceEE
Q psy9278 21 DYQLFDCKWMPCSAKFIVLGM-KPKGTGSIQMYEINDGQPELVKTVEKPN---AFKCGTFNASPLSERYLATGDFEGKLQ 96 (98)
Q Consensus 21 ~yT~fD~kWIP~SArfV~lG~-~prgtG~iqIyeL~~~~l~~~~e~e~~~---~~KC~TFgaSsl~~r~lAtGdf~G~L~ 96 (98)
...+.++.| |...++++... .....+.|.+|+++.+++..+.+..... .+....|.+. .+.+++++-+|...
T Consensus 286 ~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spd---g~~~~~~~~~g~~~ 361 (741)
T 2ecf_A 286 DIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDD---GSILWSSERTGFQH 361 (741)
T ss_dssp SEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTT---SCEEEEECTTSSCE
T ss_pred ceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCC---CeEEEEecCCCccE
Confidence 456788999 99887776654 4445788999999999877766544332 2345566433 34788999999877
Q ss_pred eC
Q psy9278 97 IW 98 (98)
Q Consensus 97 iw 98 (98)
||
T Consensus 362 l~ 363 (741)
T 2ecf_A 362 LY 363 (741)
T ss_dssp EE
T ss_pred EE
Confidence 76
No 140
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=93.43 E-value=0.36 Score=36.39 Aligned_cols=70 Identities=19% Similarity=0.291 Sum_probs=50.4
Q ss_pred cceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEE-EeecCceEEe
Q psy9278 22 YQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLA-TGDFEGKLQI 97 (98)
Q Consensus 22 yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lA-tGdf~G~L~i 97 (98)
..+..++|-|...+++..+ ..++...|.+|++..++...+.. .+..+.+..|-.. .+.|| +++.+|...|
T Consensus 179 ~~v~~~~~Spdg~~la~~s-~~~~~~~i~~~d~~tg~~~~l~~--~~~~~~~~~~spd---g~~la~~~~~~g~~~i 249 (415)
T 2hqs_A 179 QPLMSPAWSPDGSKLAYVT-FESGRSALVIQTLANGAVRQVAS--FPRHNGAPAFSPD---GSKLAFALSKTGSLNL 249 (415)
T ss_dssp SCEEEEEECTTSSEEEEEE-CTTSSCEEEEEETTTCCEEEEEC--CSSCEEEEEECTT---SSEEEEEECTTSSCEE
T ss_pred CcceeeEEcCCCCEEEEEE-ecCCCcEEEEEECCCCcEEEeec--CCCcccCEEEcCC---CCEEEEEEecCCCceE
Confidence 4578899999987766655 45567899999999998765543 4557788888543 35677 7887776433
No 141
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=93.25 E-value=0.35 Score=33.45 Aligned_cols=71 Identities=8% Similarity=0.084 Sum_probs=46.2
Q ss_pred cceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecc-----cCceeeeecCCCCCCCceEEEeecC----
Q psy9278 22 YQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEK-----PNAFKCGTFNASPLSERYLATGDFE---- 92 (98)
Q Consensus 22 yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~-----~~~~KC~TFgaSsl~~r~lAtGdf~---- 92 (98)
+.+..+.|-|...++++.+ .+.|.|.+|+++.+++...-+... .....+..|-. ..+.|++++-+
T Consensus 43 ~~~~~~~~s~dg~~~~v~~---~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~sp---dg~~l~~~~~~~~~~ 116 (349)
T 1jmx_B 43 FGPGTAMMAPDNRTAYVLN---NHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISP---DGKEVYATVNPTQRL 116 (349)
T ss_dssp CSSCEEEECTTSSEEEEEE---TTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECT---TSSEEEEEEEEEEEC
T ss_pred CCCceeEECCCCCEEEEEe---CCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECC---CCCEEEEEccccccc
Confidence 3688899999986666655 356889999998887554333322 11244455533 24678888754
Q ss_pred --------ceEEeC
Q psy9278 93 --------GKLQIW 98 (98)
Q Consensus 93 --------G~L~iw 98 (98)
+.+.+|
T Consensus 117 ~~~~~~~~~~i~~~ 130 (349)
T 1jmx_B 117 NDHYVVKPPRLEVF 130 (349)
T ss_dssp SSCEEECCCEEEEE
T ss_pred ccccccCCCeEEEE
Confidence 777775
No 142
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=92.98 E-value=0.58 Score=32.29 Aligned_cols=65 Identities=14% Similarity=0.179 Sum_probs=43.0
Q ss_pred ceeeeeeec-CCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 23 QLFDCKWMP-CSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 23 T~fD~kWIP-~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
.++.+.|-| ... ++.++ .|.|.+|+++.+++.. .++......+..|-+. .+.|++++-+|.|.+|
T Consensus 256 ~~~~~~~sp~dg~-~l~~~-----~~~v~~~d~~~~~~~~--~~~~~~~~~~~~~s~d---g~~l~~~~~~~~v~v~ 321 (349)
T 1jmx_B 256 LYFTGLRSPKDPN-QIYGV-----LNRLAKYDLKQRKLIK--AANLDHTYYCVAFDKK---GDKLYLGGTFNDLAVF 321 (349)
T ss_dssp CEEEEEECSSCTT-EEEEE-----ESEEEEEETTTTEEEE--EEECSSCCCEEEECSS---SSCEEEESBSSEEEEE
T ss_pred cceeeEecCCCCC-EEEEE-----cCeEEEEECccCeEEE--EEcCCCCccceEECCC---CCEEEEecCCCeEEEE
Confidence 355666778 554 44454 7899999998876543 3334444556666433 3567778888999987
No 143
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=92.03 E-value=0.98 Score=35.94 Aligned_cols=73 Identities=15% Similarity=0.262 Sum_probs=52.1
Q ss_pred cceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCC-CCCCceEEEeec-CceEEeC
Q psy9278 22 YQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNAS-PLSERYLATGDF-EGKLQIW 98 (98)
Q Consensus 22 yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaS-sl~~r~lAtGdf-~G~L~iw 98 (98)
+.++.+.+-|...++++.+. + |.|.+|+++...++++.+++.........|-.. ....+.|+++++ ++.+.||
T Consensus 179 ~~~~~v~~spdg~~l~v~~~---d-~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~ 253 (543)
T 1nir_A 179 YAVHISRMSASGRYLLVIGR---D-ARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIM 253 (543)
T ss_dssp TTEEEEEECTTSCEEEEEET---T-SEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEE
T ss_pred cccceEEECCCCCEEEEECC---C-CeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEE
Confidence 44888889997766666552 3 999999996555777888876666677777330 013578888885 7988886
No 144
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=91.84 E-value=0.39 Score=37.88 Aligned_cols=68 Identities=12% Similarity=0.227 Sum_probs=47.3
Q ss_pred ceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEeccc--CceeeeecCCCCCCCceEEEeec---------
Q psy9278 23 QLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKP--NAFKCGTFNASPLSERYLATGDF--------- 91 (98)
Q Consensus 23 T~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~--~~~KC~TFgaSsl~~r~lAtGdf--------- 91 (98)
...+.+|.|.. +++..+ ..|.|.+|+++.++...+.+.... .++.+..|-+ ..+.||++.-
T Consensus 17 ~~~~~~~s~dg-~~~~~~----~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~Sp---Dg~~la~~~~~~~~~~~s~ 88 (719)
T 1z68_A 17 KTFFPNWISGQ-EYLHQS----ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSP---DRQFVYLESDYSKLWRYSY 88 (719)
T ss_dssp CCCCCEESSSS-EEEEEC----TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECT---TSSEEEEEEEEEECSSSCE
T ss_pred CCCccEECCCC-eEEEEc----CCCCEEEEEcCCCcEEEEEccccccccceeeEEECC---CCCeEEEEecCceeEEeec
Confidence 34689999999 788766 367999999999987766543321 2366666633 3467877654
Q ss_pred CceEEeC
Q psy9278 92 EGKLQIW 98 (98)
Q Consensus 92 ~G~L~iw 98 (98)
++.|.||
T Consensus 89 ~~~i~~~ 95 (719)
T 1z68_A 89 TATYYIY 95 (719)
T ss_dssp EEEEEEE
T ss_pred ceEEEEE
Confidence 6788776
No 145
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=91.83 E-value=0.75 Score=34.61 Aligned_cols=63 Identities=14% Similarity=0.175 Sum_probs=46.9
Q ss_pred cCCccEEEEccccCCc--ccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCc---eEEeC
Q psy9278 31 PCSAKFIVLGMKPKGT--GSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEG---KLQIW 98 (98)
Q Consensus 31 P~SArfV~lG~~prgt--G~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G---~L~iw 98 (98)
|...|++.+.....+. +.|.+|+++++++..+.. +...+.+..|-.. .+.||++++++ .|.+|
T Consensus 141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~--~~~~v~~~~~Spd---g~~la~~s~~~~~~~i~~~ 208 (415)
T 2hqs_A 141 AFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHR--SPQPLMSPAWSPD---GSKLAYVTFESGRSALVIQ 208 (415)
T ss_dssp CTTCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEE--ESSCEEEEEECTT---SSEEEEEECTTSSCEEEEE
T ss_pred cCCCEEEEEEecCCCCccceEEEEcCCCCCCEEEeC--CCCcceeeEEcCC---CCEEEEEEecCCCcEEEEE
Confidence 4477888888764433 899999999877766654 4567888888543 46899999986 77776
No 146
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=91.69 E-value=0.64 Score=36.73 Aligned_cols=60 Identities=12% Similarity=0.178 Sum_probs=45.4
Q ss_pred ceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 23 QLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 23 T~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
-+++++|+|.+ |+++. ..|.|.+|+|.++.+..+ ...++|...-... ++.|.=||++.+|
T Consensus 128 ~v~~i~~~~p~--~av~~----~dG~L~v~dl~~~~~~~~-----~~~Vs~v~WSpkG-----~~vg~~dg~i~~~ 187 (388)
T 1xip_A 128 PVFQLKNVNNT--LVILN----SVNDLSALDLRTKSTKQL-----AQNVTSFDVTNSQ-----LAVLLKDRSFQSF 187 (388)
T ss_dssp CEEEEEECSSE--EEEEE----TTSEEEEEETTTCCEEEE-----EESEEEEEECSSE-----EEEEETTSCEEEE
T ss_pred ceeeEEecCCC--EEEEE----CCCCEEEEEccCCccccc-----cCCceEEEEcCCc-----eEEEEcCCcEEEE
Confidence 36799999885 66654 789999999998877542 3478898774432 7888888988875
No 147
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=91.57 E-value=0.89 Score=33.02 Aligned_cols=75 Identities=16% Similarity=0.209 Sum_probs=43.8
Q ss_pred ceeeee-eecCCccEEEEccccCC---cccEEEEEec-CCceeEEEE-ecc-cCceeeeecCCCCCCCceEEEeecC-ce
Q psy9278 23 QLFDCK-WMPCSAKFIVLGMKPKG---TGSIQMYEIN-DGQPELVKT-VEK-PNAFKCGTFNASPLSERYLATGDFE-GK 94 (98)
Q Consensus 23 T~fD~k-WIP~SArfV~lG~~prg---tG~iqIyeL~-~~~l~~~~e-~e~-~~~~KC~TFgaSsl~~r~lAtGdf~-G~ 94 (98)
.+.++. |=|... ++.++..-.. .|.|+||.++ .|++..+.+ ++. ........|-+..+..++|++++.+ |.
T Consensus 255 ~~~~i~~~spdG~-~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~ 333 (365)
T 1jof_A 255 YRADVCALTFSGK-YMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGW 333 (365)
T ss_dssp EEEEEEEECTTSS-EEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCE
T ss_pred ccccEEEECCCCC-EEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCe
Confidence 578899 888865 4445443322 4599999997 677765433 321 1112222221100035788888875 89
Q ss_pred EEeC
Q psy9278 95 LQIW 98 (98)
Q Consensus 95 L~iw 98 (98)
+.||
T Consensus 334 v~v~ 337 (365)
T 1jof_A 334 LEIY 337 (365)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9887
No 148
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=90.90 E-value=1.3 Score=30.73 Aligned_cols=72 Identities=14% Similarity=0.097 Sum_probs=46.8
Q ss_pred CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEeccc-----Ccee---eeecCCCCCCCceE-EEeec
Q psy9278 21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKP-----NAFK---CGTFNASPLSERYL-ATGDF 91 (98)
Q Consensus 21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~-----~~~K---C~TFgaSsl~~r~l-AtGdf 91 (98)
...+.++.|-|....+++... +.+.|.+|++..++++.+..+... .+.. +..|. ...+.| +++.-
T Consensus 220 ~~~~~~~~~spdg~~l~v~~~---~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s---pdg~~l~v~~~~ 293 (331)
T 3u4y_A 220 NNLPGTIVVSRDGSTVYVLTE---STVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALN---KTETKLFISANI 293 (331)
T ss_dssp SSCCCCEEECTTSSEEEEECS---SEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEEC---TTSSEEEEEETT
T ss_pred CCCCceEEECCCCCEEEEEEc---CCCEEEEEECCCCceeeecccccccccCCCCcccccceEEC---CCCCEEEEecCC
Confidence 466788999998876655543 678899999999999877765533 1111 11232 223455 45556
Q ss_pred CceEEeC
Q psy9278 92 EGKLQIW 98 (98)
Q Consensus 92 ~G~L~iw 98 (98)
+|.+.||
T Consensus 294 ~~~v~v~ 300 (331)
T 3u4y_A 294 SRELKVF 300 (331)
T ss_dssp TTEEEEE
T ss_pred CCcEEEE
Confidence 7788887
No 149
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=90.90 E-value=1.1 Score=34.61 Aligned_cols=69 Identities=13% Similarity=0.086 Sum_probs=50.6
Q ss_pred eeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCc--eEEeC
Q psy9278 25 FDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEG--KLQIW 98 (98)
Q Consensus 25 fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G--~L~iw 98 (98)
++..|=|+..+++..+....+.+.|.+|+++.++++.+. +.+..+....|-. ..+.||+++-+| .|.+|
T Consensus 153 ~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~--~~~~~~~~~~~Sp---DG~~l~~~~~~~~~~i~~~ 223 (582)
T 3o4h_A 153 FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFD--SGEGSFSSASISP---GMKVTAGLETAREARLVTV 223 (582)
T ss_dssp CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEEC--CSSCEEEEEEECT---TSCEEEEEECSSCEEEEEE
T ss_pred ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEee--cCCCccccceECC---CCCEEEEccCCCeeEEEEE
Confidence 788899998887777776666788999999999987663 3444556666632 346899999999 56554
No 150
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=90.55 E-value=0.84 Score=35.76 Aligned_cols=67 Identities=15% Similarity=0.258 Sum_probs=48.4
Q ss_pred eeeeeeecCCccEEEEccc-----------------------------cCCcccEEEEEecCCceeEEEEe-cccCceee
Q psy9278 24 LFDCKWMPCSAKFIVLGMK-----------------------------PKGTGSIQMYEINDGQPELVKTV-EKPNAFKC 73 (98)
Q Consensus 24 ~fD~kWIP~SArfV~lG~~-----------------------------prgtG~iqIyeL~~~~l~~~~e~-e~~~~~KC 73 (98)
+..+.|-|...++++.... .++.+.|.+|+++.++...+... .+...+.+
T Consensus 183 ~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 262 (706)
T 2z3z_A 183 EKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTN 262 (706)
T ss_dssp CCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEE
T ss_pred CceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEee
Confidence 5788999999888877521 34678899999999987666543 34566788
Q ss_pred eecCCCCCCCceEEEeecCc
Q psy9278 74 GTFNASPLSERYLATGDFEG 93 (98)
Q Consensus 74 ~TFgaSsl~~r~lAtGdf~G 93 (98)
..|-.. .+.||++..++
T Consensus 263 ~~~spd---g~~l~~~~~~~ 279 (706)
T 2z3z_A 263 LSWSPD---ENILYVAEVNR 279 (706)
T ss_dssp EEECTT---SSEEEEEEECT
T ss_pred EEEECC---CCEEEEEEeCC
Confidence 888543 46788877765
No 151
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=90.47 E-value=1.9 Score=29.88 Aligned_cols=69 Identities=10% Similarity=0.002 Sum_probs=44.7
Q ss_pred eee-eeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEee-cCce-EEeC
Q psy9278 24 LFD-CKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGD-FEGK-LQIW 98 (98)
Q Consensus 24 ~fD-~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGd-f~G~-L~iw 98 (98)
+.. +.|-|...+++ ++....+.+.|.+|+++.+++ +..++......+..|-+.. ++|++.+ -++. +.+|
T Consensus 85 ~~~~~~~s~dg~~l~-~~~~~~~~~~i~v~d~~~~~~--~~~~~~~~~~~~~~~spdg---~~l~~~~~~~~~~i~~~ 156 (331)
T 3u4y_A 85 SMADVDITPDDQFAV-TVTGLNHPFNMQSYSFLKNKF--ISTIPIPYDAVGIAISPNG---NGLILIDRSSANTVRRF 156 (331)
T ss_dssp CCCCEEECTTSSEEE-ECCCSSSSCEEEEEETTTTEE--EEEEECCTTEEEEEECTTS---SCEEEEEETTTTEEEEE
T ss_pred CccceEECCCCCEEE-EecCCCCcccEEEEECCCCCe--EEEEECCCCccceEECCCC---CEEEEEecCCCceEEEE
Confidence 445 88989887777 554444556999999988865 3445545556777775442 3455544 4477 7765
No 152
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=89.81 E-value=2.2 Score=29.77 Aligned_cols=63 Identities=13% Similarity=0.130 Sum_probs=42.2
Q ss_pred ceeeeeeecCCccEEEEcccc-CCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeec
Q psy9278 23 QLFDCKWMPCSAKFIVLGMKP-KGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDF 91 (98)
Q Consensus 23 T~fD~kWIP~SArfV~lG~~p-rgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf 91 (98)
.+...+|-|...+++.+.... +++..|-+++++.++...+...+. +....|-+ ..+.||....
T Consensus 60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~---~~~~~wsp---dg~~l~~~~~ 123 (347)
T 2gop_A 60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN---IRSLEWNE---DSRKLLIVGF 123 (347)
T ss_dssp SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE---EEEEEECT---TSSEEEEEEE
T ss_pred cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC---ccceeECC---CCCEEEEEEc
Confidence 466789999999888876543 245557777778888776665543 66666632 2467777754
No 153
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=89.73 E-value=1.4 Score=34.59 Aligned_cols=77 Identities=12% Similarity=0.224 Sum_probs=50.2
Q ss_pred CcceeeeeeecCCccEEEEcc-ccCCcccEEEEEecCC-ceeEEEEecccC---ceeeeecCCCCCCCceEEEeecCceE
Q psy9278 21 DYQLFDCKWMPCSAKFIVLGM-KPKGTGSIQMYEINDG-QPELVKTVEKPN---AFKCGTFNASPLSERYLATGDFEGKL 95 (98)
Q Consensus 21 ~yT~fD~kWIP~SArfV~lG~-~prgtG~iqIyeL~~~-~l~~~~e~e~~~---~~KC~TFgaSsl~~r~lAtGdf~G~L 95 (98)
+..+..+.|-|...++++... .......|.+|++..+ +++.+.+.+... .+.+..|-+. ...+.|++++-+|..
T Consensus 257 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~-~dg~~l~~~~~~g~~ 335 (706)
T 2z3z_A 257 EKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPG-SNNQFIWQSRRDGWN 335 (706)
T ss_dssp TCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTT-CSSEEEEEECTTSSC
T ss_pred ceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecC-CCCEEEEEEccCCcc
Confidence 345788999999887776542 2234568888998888 666665433322 2245566430 023588999999988
Q ss_pred EeC
Q psy9278 96 QIW 98 (98)
Q Consensus 96 ~iw 98 (98)
.||
T Consensus 336 ~l~ 338 (706)
T 2z3z_A 336 HLY 338 (706)
T ss_dssp EEE
T ss_pred EEE
Confidence 876
No 154
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=89.61 E-value=1.9 Score=29.39 Aligned_cols=70 Identities=9% Similarity=0.042 Sum_probs=45.3
Q ss_pred ceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccC----ceeeeecCCCCCCCceEEEee--------
Q psy9278 23 QLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPN----AFKCGTFNASPLSERYLATGD-------- 90 (98)
Q Consensus 23 T~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~----~~KC~TFgaSsl~~r~lAtGd-------- 90 (98)
.+.++.|-|...++++.+. ..|.|.+|++..+++...-....+. ...+..|-+ ..+.|++++
T Consensus 35 ~~~~~~~s~dg~~l~v~~~---~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~---dg~~l~~~~~~~~~~~~ 108 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVN---KSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSP---DGKTLAIYESPVRLELT 108 (337)
T ss_dssp CCCCEEECTTSSEEEEEET---TTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECT---TSSEEEEEEEEEEECSS
T ss_pred CccceEEcCCCCEEEEEeC---CCCeEEEEECCCCCeEeeEEcCCcccccccccceEECC---CCCEEEEEecccccccc
Confidence 5888999999877766653 4678999999888754333322211 344455532 245788876
Q ss_pred ----cCceEEeC
Q psy9278 91 ----FEGKLQIW 98 (98)
Q Consensus 91 ----f~G~L~iw 98 (98)
-++.|.+|
T Consensus 109 ~~~~~~~~i~v~ 120 (337)
T 1pby_B 109 HFEVQPTRVALY 120 (337)
T ss_dssp CEEECCCEEEEE
T ss_pred cccccCceEEEE
Confidence 46888776
No 155
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=89.58 E-value=1.5 Score=34.54 Aligned_cols=82 Identities=17% Similarity=0.180 Sum_probs=53.6
Q ss_pred ehhhhhcCCcc---eeeeeeecCCccEEEEccccC--CcccEEEEEecCCceeEEEEeccc-------------------
Q psy9278 13 ICLVEKSLDYQ---LFDCKWMPCSAKFIVLGMKPK--GTGSIQMYEINDGQPELVKTVEKP------------------- 68 (98)
Q Consensus 13 Iehi~ksl~yT---~fD~kWIP~SArfV~lG~~pr--gtG~iqIyeL~~~~l~~~~e~e~~------------------- 68 (98)
++.+-++..|+ +.++.|-|...+++..+.... +...|.+|+++.++...+......
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (741)
T 2ecf_A 25 LEAITGPLPLSGPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQR 104 (741)
T ss_dssp HHHHTSSSCTTCCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC------------------
T ss_pred HHHHhccCCcCCCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhh
Confidence 44454433333 789999999988888775322 245899999999987666554322
Q ss_pred ----CceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 69 ----NAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 69 ----~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
.++.+..|-. ..+.||+++- |.|.+|
T Consensus 105 ~~~~~~v~~~~~Sp---Dg~~l~~~~~-~~i~~~ 134 (741)
T 2ecf_A 105 IAAMTGIVDYQWSP---DAQRLLFPLG-GELYLY 134 (741)
T ss_dssp --CCEESCCCEECT---TSSEEEEEET-TEEEEE
T ss_pred hccccCcceeEECC---CCCEEEEEeC-CcEEEE
Confidence 2355666633 2467888775 777776
No 156
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=89.17 E-value=0.86 Score=36.34 Aligned_cols=53 Identities=11% Similarity=0.115 Sum_probs=36.5
Q ss_pred cccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 46 TGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 46 tG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
.+.+++|.++.+.-.+....-++....+.+|-...-....||+|+.|+.+.||
T Consensus 156 d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIW 208 (356)
T 2w18_A 156 DQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIW 208 (356)
T ss_dssp TCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEE
T ss_pred CCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEE
Confidence 66777888855322233333466677777776544456789999999999998
No 157
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=88.39 E-value=2.2 Score=29.46 Aligned_cols=76 Identities=4% Similarity=0.014 Sum_probs=46.6
Q ss_pred cCCcceeeeeeecCCccEEEEccccC---CcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceE
Q psy9278 19 SLDYQLFDCKWMPCSAKFIVLGMKPK---GTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKL 95 (98)
Q Consensus 19 sl~yT~fD~kWIP~SArfV~lG~~pr---gtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L 95 (98)
.+.-.++++.|-|...++.+.....+ ..|.|.+|+++.+++.. .++.........|-.. .++-++++..+|.|
T Consensus 38 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~--~~~~~~~~~~~~~s~d--g~~l~v~~~~~~~v 113 (353)
T 3vgz_A 38 AVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQ--AIHNDLKPFGATINNT--TQTLWFGNTVNSAV 113 (353)
T ss_dssp EEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEE--EEEESSCCCSEEEETT--TTEEEEEETTTTEE
T ss_pred hhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEE--EEecCCCcceEEECCC--CCEEEEEecCCCEE
Confidence 44566899999998877766654332 27889999888776443 3333333344444332 23345555667888
Q ss_pred EeC
Q psy9278 96 QIW 98 (98)
Q Consensus 96 ~iw 98 (98)
.+|
T Consensus 114 ~~~ 116 (353)
T 3vgz_A 114 TAI 116 (353)
T ss_dssp EEE
T ss_pred EEE
Confidence 775
No 158
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=86.55 E-value=4.7 Score=27.79 Aligned_cols=70 Identities=10% Similarity=0.158 Sum_probs=43.7
Q ss_pred CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
...+.++.|-|...++.+.. .+.|.|.+|++..+++...-.. +.+ .+..|-.. .++-++++.-+|.+.+|
T Consensus 230 ~~~~~~~~~s~dg~~l~~~~---~~~~~v~~~d~~~~~~~~~~~~--~~~-~~~~~s~d--g~~l~v~~~~~~~v~~~ 299 (353)
T 3vgz_A 230 EHFFINISLDTARQRAFITD---SKAAEVLVVDTRNGNILAKVAA--PES-LAVLFNPA--RNEAYVTHRQAGKVSVI 299 (353)
T ss_dssp CCCEEEEEEETTTTEEEEEE---SSSSEEEEEETTTCCEEEEEEC--SSC-CCEEEETT--TTEEEEEETTTTEEEEE
T ss_pred CcccceEEECCCCCEEEEEe---CCCCEEEEEECCCCcEEEEEEc--CCC-ceEEECCC--CCEEEEEECCCCeEEEE
Confidence 34567789999887766554 4578999999988876443333 333 23445322 23334444468888876
No 159
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=85.79 E-value=3.3 Score=32.85 Aligned_cols=71 Identities=14% Similarity=0.177 Sum_probs=47.0
Q ss_pred ceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 23 QLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 23 T~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
.+..+.+-|...+|++-. +++|.|.+|++..++.-.+..++.........|-+ ...+-++++..++++.+|
T Consensus 281 ~v~~i~~s~~~~~~~vs~---~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~sp--dg~~l~va~~~~~~v~v~ 351 (543)
T 1nir_A 281 RVAAIIASHEHPEFIVNV---KETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDS--SHRYFMTAANNSNKVAVI 351 (543)
T ss_dssp CEEEEEECSSSSEEEEEE---TTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECT--TSCEEEEEEGGGTEEEEE
T ss_pred ceEEEEECCCCCEEEEEE---CCCCeEEEEEecCCCcceeEEeccCcCccCceECC--CCCEEEEEecCCCeEEEE
Confidence 355666667666776654 57899999999887654455666555555666633 234445666678898886
No 160
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=84.88 E-value=4.8 Score=31.41 Aligned_cols=45 Identities=9% Similarity=0.172 Sum_probs=33.2
Q ss_pred CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEe
Q psy9278 21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTV 65 (98)
Q Consensus 21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~ 65 (98)
+..+.++.|-|....+++........+.|.+|+++.+++..+.+.
T Consensus 254 ~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~ 298 (723)
T 1xfd_A 254 EYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHED 298 (723)
T ss_dssp SEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEE
T ss_pred cceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEe
Confidence 456778999999876555555555678899999999987665543
No 161
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=83.89 E-value=4.2 Score=34.21 Aligned_cols=70 Identities=13% Similarity=0.158 Sum_probs=49.4
Q ss_pred CcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecC--------
Q psy9278 21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFE-------- 92 (98)
Q Consensus 21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~-------- 92 (98)
...+..+.|-|...++++.+ ..+.|.+|+++.+++..+.+ .+...+.+..|-.. .+.||++..+
T Consensus 378 ~~~~~~~~~SpDG~~la~~~----~~~~v~~~d~~tg~~~~~~~-~~~~~v~~~~~SpD---G~~la~~~~~~~~~~~~~ 449 (1045)
T 1k32_A 378 LGNVFAMGVDRNGKFAVVAN----DRFEIMTVDLETGKPTVIER-SREAMITDFTISDN---SRFIAYGFPLKHGETDGY 449 (1045)
T ss_dssp CCSEEEEEECTTSSEEEEEE----TTSEEEEEETTTCCEEEEEE-CSSSCCCCEEECTT---SCEEEEEEEECSSTTCSC
T ss_pred ccceeeeEECCCCCEEEEEC----CCCeEEEEECCCCceEEecc-CCCCCccceEECCC---CCeEEEEecCccccccCC
Confidence 45678899999987777554 34689999999998877654 24556677777333 4678877654
Q ss_pred --ceEEeC
Q psy9278 93 --GKLQIW 98 (98)
Q Consensus 93 --G~L~iw 98 (98)
+.|.+|
T Consensus 450 ~~~~i~l~ 457 (1045)
T 1k32_A 450 VMQAIHVY 457 (1045)
T ss_dssp CEEEEEEE
T ss_pred CCCeEEEE
Confidence 377776
No 162
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=82.95 E-value=2.1 Score=33.68 Aligned_cols=68 Identities=10% Similarity=0.091 Sum_probs=47.6
Q ss_pred cceeeeeeecCCccEEEEcccc-----CCcccEEEEEecCCce---eEEEEecccCceeeeecCCCCCCCceEEEeecCc
Q psy9278 22 YQLFDCKWMPCSAKFIVLGMKP-----KGTGSIQMYEINDGQP---ELVKTVEKPNAFKCGTFNASPLSERYLATGDFEG 93 (98)
Q Consensus 22 yT~fD~kWIP~SArfV~lG~~p-----rgtG~iqIyeL~~~~l---~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G 93 (98)
+.+....|=|...+++...... .+.|.|.||+++.+++ ..+ +..+....|-.. -+.||.+. ++
T Consensus 60 ~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l-----~~~~~~~~~SPD---G~~la~~~-~~ 130 (719)
T 1z68_A 60 VNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL-----PRPIQYLCWSPV---GSKLAYVY-QN 130 (719)
T ss_dssp TTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC-----CSSBCCEEECSS---TTCEEEEE-TT
T ss_pred cceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec-----CcccccceECCC---CCEEEEEE-CC
Confidence 3578899999987777665432 2368999999999987 333 244666666443 36788885 78
Q ss_pred eEEeC
Q psy9278 94 KLQIW 98 (98)
Q Consensus 94 ~L~iw 98 (98)
+|.+|
T Consensus 131 ~i~~~ 135 (719)
T 1z68_A 131 NIYLK 135 (719)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 88776
No 163
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=82.38 E-value=2.4 Score=29.83 Aligned_cols=69 Identities=14% Similarity=0.108 Sum_probs=44.8
Q ss_pred eeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCC-CCCCceEEEeecCceEEeC
Q psy9278 24 LFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNAS-PLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 24 ~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaS-sl~~r~lAtGdf~G~L~iw 98 (98)
+.+..|-|...+++.+... .|...|.+++++.++...+..-... ..++.. +...+.||...-++.|.+|
T Consensus 38 ~~~~~~SpdG~~l~~~~~~-~g~~~l~~~d~~~~~~~~l~~~~~~-----~~~~~~~spdg~~l~~~~~~~~l~~~ 107 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDF-DGNRNYYLLNLETQQAVQLTEGKGD-----NTFGGFISTDERAFFYVKNELNLMKV 107 (396)
T ss_dssp TTSCCBCTTSCEEEEEECT-TSSCEEEEEETTTTEEEECCCSSCB-----CTTTCEECTTSSEEEEEETTTEEEEE
T ss_pred eecCcCCCCCCEEEEEEec-CCCceEEEEECCCCcEEEeecCCCC-----ccccceECCCCCEEEEEEcCCcEEEE
Confidence 6778999998887777654 5666788888888876655332211 111121 3345789888888877664
No 164
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=82.29 E-value=3.6 Score=32.08 Aligned_cols=73 Identities=11% Similarity=0.031 Sum_probs=47.4
Q ss_pred cceeeeeeecCCccEEEEccccCC-----cccEEEEEecCCceeEEEEecc-cCceeeeecCCCCCCCceEEEeecCceE
Q psy9278 22 YQLFDCKWMPCSAKFIVLGMKPKG-----TGSIQMYEINDGQPELVKTVEK-PNAFKCGTFNASPLSERYLATGDFEGKL 95 (98)
Q Consensus 22 yT~fD~kWIP~SArfV~lG~~prg-----tG~iqIyeL~~~~l~~~~e~e~-~~~~KC~TFgaSsl~~r~lAtGdf~G~L 95 (98)
+.+.++.|=|...+++......+. .+.|.||+++.++++.+...+. ...+.+..|-. ..+.||.+.- ++|
T Consensus 61 ~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SP---dG~~la~~~~-~~i 136 (723)
T 1xfd_A 61 LRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGP---KGQQLIFIFE-NNI 136 (723)
T ss_dssp TTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCS---STTCEEEEET-TEE
T ss_pred cccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECC---CCCEEEEEEC-CeE
Confidence 357889999998777666543332 3899999999998865544332 22245555533 2467888774 666
Q ss_pred EeC
Q psy9278 96 QIW 98 (98)
Q Consensus 96 ~iw 98 (98)
.+|
T Consensus 137 ~~~ 139 (723)
T 1xfd_A 137 YYC 139 (723)
T ss_dssp EEE
T ss_pred EEE
Confidence 665
No 165
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=81.21 E-value=3.3 Score=33.36 Aligned_cols=41 Identities=10% Similarity=0.375 Sum_probs=30.8
Q ss_pred cCCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEe
Q psy9278 19 SLDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTV 65 (98)
Q Consensus 19 sl~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~ 65 (98)
......+.+.|+|.. ++++.+ .|.|.+|+++.|+...+-+.
T Consensus 14 ~~~~~~~~~~w~~dg-~~~~~~-----~~~i~~~~~~~~~~~~~~~~ 54 (740)
T 4a5s_A 14 TYRLKLYSLRWISDH-EYLYKQ-----ENNILVFNAEYGNSSVFLEN 54 (740)
T ss_dssp CSCCCCCCEEECSSS-EEEEEE-----TTEEEEEETTTCCEEEEECT
T ss_pred cccccccccEECCCC-cEEEEc-----CCcEEEEECCCCceEEEEec
Confidence 344557899999998 677665 58999999998886655333
No 166
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=76.81 E-value=4.8 Score=28.43 Aligned_cols=69 Identities=12% Similarity=0.027 Sum_probs=42.3
Q ss_pred eeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 25 FDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 25 fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
++..|-|...+++..... .|+-.|-+++++.++...+.+..... .-...| +...+.||.++-++.|.+|
T Consensus 39 ~~~~~SpDg~~l~~~~~~-~g~~~l~~~d~~~g~~~~lt~~~~~~-~~~~~~---spdg~~l~~~~~~~~l~~~ 107 (388)
T 3pe7_A 39 YQKCFTRDGSKLLFGGAF-DGPWNYYLLDLNTQVATQLTEGRGDN-TFGGFL---SPDDDALFYVKDGRNLMRV 107 (388)
T ss_dssp TSCCBCTTSCEEEEEECT-TSSCEEEEEETTTCEEEECCCSSCBC-SSSCEE---CTTSSEEEEEETTTEEEEE
T ss_pred cCccCCCCCCEEEEEEcC-CCCceEEEEeCCCCceEEeeeCCCCC-ccceEE---cCCCCEEEEEeCCCeEEEE
Confidence 347899999888887642 34445666677788776555432211 112223 2335689888877777654
No 167
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=72.96 E-value=9.4 Score=32.12 Aligned_cols=69 Identities=10% Similarity=-0.019 Sum_probs=45.8
Q ss_pred CcceeeeeeecCCccEEEEcccc------CCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCce
Q psy9278 21 DYQLFDCKWMPCSAKFIVLGMKP------KGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGK 94 (98)
Q Consensus 21 ~yT~fD~kWIP~SArfV~lG~~p------rgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~ 94 (98)
...++++.|-|....++..+... .+.+.|.+|+++.+++..+. ..........|-+. .+.|++++-++.
T Consensus 420 ~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~--~~~~~~~~~~~spd---G~~l~~~s~~~~ 494 (1045)
T 1k32_A 420 EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAAT--TENSHDYAPAFDAD---SKNLYYLSYRSL 494 (1045)
T ss_dssp SSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECS--CSSSBEEEEEECTT---SCEEEEEESCCC
T ss_pred CCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEee--CCCcccCCceEcCC---CCEEEEEecccC
Confidence 34568899999998888777654 55689999999988744332 23444555666433 356776665443
No 168
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=72.90 E-value=7.8 Score=27.13 Aligned_cols=69 Identities=7% Similarity=-0.015 Sum_probs=40.3
Q ss_pred Ccceeeeeeec-CCccEEEEccccCC--cccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecC
Q psy9278 21 DYQLFDCKWMP-CSAKFIVLGMKPKG--TGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFE 92 (98)
Q Consensus 21 ~yT~fD~kWIP-~SArfV~lG~~prg--tG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~ 92 (98)
...+.+..|-| ...+++.+...+.. ...|-+|.+++++++.+.+-.....+....|-+. .+.||....+
T Consensus 187 ~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spd---g~~l~~~~~~ 258 (396)
T 3c5m_A 187 TAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPD---GSAMAYVSYF 258 (396)
T ss_dssp SSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTT---SSCEEEEEEE
T ss_pred CcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCC---CCEEEEEecC
Confidence 34567889999 67777777642221 1578888888877666554111223455556332 3556666554
No 169
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=72.86 E-value=9.5 Score=34.09 Aligned_cols=52 Identities=12% Similarity=0.107 Sum_probs=44.0
Q ss_pred ccEEEEEecCCceeEEEEecccCceeeeecCCCC---CCCceEEEeec-CceEEeC
Q psy9278 47 GSIQMYEINDGQPELVKTVEKPNAFKCGTFNASP---LSERYLATGDF-EGKLQIW 98 (98)
Q Consensus 47 G~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSs---l~~r~lAtGdf-~G~L~iw 98 (98)
|.|-++|++.++|+.+.+.|-+..+-|..++... .+.+.+|.|.. |++++|+
T Consensus 532 ~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~ 587 (1158)
T 3ei3_A 532 RALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARIL 587 (1158)
T ss_dssp TEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEE
T ss_pred CEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEE
Confidence 6788899999999999999999999999997543 34679999998 9999874
No 170
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=70.90 E-value=18 Score=28.42 Aligned_cols=64 Identities=6% Similarity=-0.009 Sum_probs=40.5
Q ss_pred CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCc-eeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQ-PELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~-l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
+.- ++.+.| .-+.+++| ++ |.|.||+++.-. .+.+...+ .++...-+-+ . ++|+++-||.|.+|
T Consensus 87 lp~-V~~l~f---d~~~L~v~---~~-~~l~v~dv~sl~~~~~~~~~~--~~v~~i~~~~----p-~~av~~~dG~L~v~ 151 (388)
T 1xip_A 87 IPD-VIFVCF---HGDQVLVS---TR-NALYSLDLEELSEFRTVTSFE--KPVFQLKNVN----N-TLVILNSVNDLSAL 151 (388)
T ss_dssp CTT-EEEEEE---ETTEEEEE---ES-SEEEEEESSSTTCEEEEEECS--SCEEEEEECS----S-EEEEEETTSEEEEE
T ss_pred CCC-eeEEEE---CCCEEEEE---cC-CcEEEEEchhhhccCccceee--cceeeEEecC----C-CEEEEECCCCEEEE
Confidence 444 788888 66778888 23 789999986543 22233333 2233222221 1 49999999999987
No 171
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=70.06 E-value=19 Score=24.92 Aligned_cols=41 Identities=15% Similarity=0.366 Sum_probs=29.6
Q ss_pred eeeeeeecCCccEEEEcccc----------------CC-------cccEEEEEecCCce-eEEEE
Q psy9278 24 LFDCKWMPCSAKFIVLGMKP----------------KG-------TGSIQMYEINDGQP-ELVKT 64 (98)
Q Consensus 24 ~fD~kWIP~SArfV~lG~~p----------------rg-------tG~iqIyeL~~~~l-~~~~e 64 (98)
+....|-|...+++.....+ .| ...|.+|++..+++ +.+..
T Consensus 106 ~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~ 170 (347)
T 2gop_A 106 IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK 170 (347)
T ss_dssp EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE
T ss_pred ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC
Confidence 78899999998888876431 12 46688888888887 66554
No 172
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=68.03 E-value=10 Score=26.65 Aligned_cols=70 Identities=13% Similarity=0.169 Sum_probs=40.3
Q ss_pred eeeecCCccEEEEccc-----cCCcccEEEEEecCCceeEEEEeccc---------CceeeeecCCCCCCCceEEEeecC
Q psy9278 27 CKWMPCSAKFIVLGMK-----PKGTGSIQMYEINDGQPELVKTVEKP---------NAFKCGTFNASPLSERYLATGDFE 92 (98)
Q Consensus 27 ~kWIP~SArfV~lG~~-----prgtG~iqIyeL~~~~l~~~~e~e~~---------~~~KC~TFgaSsl~~r~lAtGdf~ 92 (98)
..|-|...++++.-.. ..+.+.|.+|+++.++++.+.....+ ....+..|-+. .++-+.+.+-+
T Consensus 295 ~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spD--g~~l~~~s~~~ 372 (388)
T 3pe7_A 295 SLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPD--DKQILFTSDVH 372 (388)
T ss_dssp SEEEEEECCC------------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTT--SSEEEEEECTT
T ss_pred CeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCC--CCEEEEEecCC
Confidence 3688888887765432 35677899999999988776654320 02344555322 23344456677
Q ss_pred ceEEeC
Q psy9278 93 GKLQIW 98 (98)
Q Consensus 93 G~L~iw 98 (98)
|..+||
T Consensus 373 g~~~l~ 378 (388)
T 3pe7_A 373 GKPALY 378 (388)
T ss_dssp SSCEEE
T ss_pred CceeEE
Confidence 877775
No 173
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=66.83 E-value=17 Score=29.16 Aligned_cols=39 Identities=10% Similarity=0.149 Sum_probs=30.8
Q ss_pred CCcceeeeeeecCCccEEEEccccCCcccEEEEEecCCc
Q psy9278 20 LDYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQ 58 (98)
Q Consensus 20 l~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~ 58 (98)
-++.+..+.|.|....+|..-.+......|.+|+++.|+
T Consensus 258 ~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~ 296 (740)
T 4a5s_A 258 GDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS 296 (740)
T ss_dssp SCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred CCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence 355688999999987666666555667789999999887
No 174
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=66.04 E-value=13 Score=28.68 Aligned_cols=70 Identities=13% Similarity=0.133 Sum_probs=39.0
Q ss_pred CcceeeeeeecCCccEEEEccccCCcccEEEEEec--CCceeEEEEecccCc-------eeeeecCCCCCCCceEEEeec
Q psy9278 21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEIN--DGQPELVKTVEKPNA-------FKCGTFNASPLSERYLATGDF 91 (98)
Q Consensus 21 ~yT~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~--~~~l~~~~e~e~~~~-------~KC~TFgaSsl~~r~lAtGdf 91 (98)
...++...|-|... +++++.. . |..+||.++ .++++.+...+.... +....|- ...+.+++++-
T Consensus 241 ~~~~~~~~~spdg~-l~~~~~~-~--~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~---~~~~~~~~~~~ 313 (662)
T 3azo_A 241 EEAIAQAEWAPDGS-LIVATDR-T--GWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPL---ANGLIAVVHGK 313 (662)
T ss_dssp TBCEEEEEECTTSC-EEEEECT-T--SSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEEC---TTSCEEEEEBS
T ss_pred CceEcceEECCCCe-EEEEECC-C--CCeEEEEEECCCCceeecccccccccCccccccCceEeEe---CCCEEEEEEEc
Confidence 46778899999987 7777653 2 444555554 676655443221110 2223331 12456666665
Q ss_pred CceEEeC
Q psy9278 92 EGKLQIW 98 (98)
Q Consensus 92 ~G~L~iw 98 (98)
|...||
T Consensus 314 -~~~~l~ 319 (662)
T 3azo_A 314 -GAAVLG 319 (662)
T ss_dssp -SSCEEE
T ss_pred -CccEEE
Confidence 666655
No 175
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=61.11 E-value=34 Score=26.36 Aligned_cols=73 Identities=10% Similarity=0.099 Sum_probs=45.6
Q ss_pred cceeeeeeecCCccEEEEccccC----CcccEEEEEec-CC---ceeEEEEecccCceeeeecCCCCCCCceEEEeecCc
Q psy9278 22 YQLFDCKWMPCSAKFIVLGMKPK----GTGSIQMYEIN-DG---QPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEG 93 (98)
Q Consensus 22 yT~fD~kWIP~SArfV~lG~~pr----gtG~iqIyeL~-~~---~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G 93 (98)
..+....|=|...+++....... +...|.+|+++ .| ++..+..- ....+....|-.. .+.+++++-+|
T Consensus 188 ~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~-~~~~~~~~~~spd---g~l~~~~~~~~ 263 (662)
T 3azo_A 188 RFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGG-PEEAIAQAEWAPD---GSLIVATDRTG 263 (662)
T ss_dssp SEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEE-TTBCEEEEEECTT---SCEEEEECTTS
T ss_pred CcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCC-CCceEcceEECCC---CeEEEEECCCC
Confidence 35677899999888776663321 35689999998 57 44443321 2345555556332 23778888888
Q ss_pred eEEeC
Q psy9278 94 KLQIW 98 (98)
Q Consensus 94 ~L~iw 98 (98)
..+||
T Consensus 264 ~~~l~ 268 (662)
T 3azo_A 264 WWNLH 268 (662)
T ss_dssp SCEEE
T ss_pred CeEEE
Confidence 55544
No 176
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=57.93 E-value=15 Score=30.50 Aligned_cols=64 Identities=22% Similarity=0.380 Sum_probs=39.1
Q ss_pred eeeeeeecCCcc---EEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCC--CceEEEeecCceEEeC
Q psy9278 24 LFDCKWMPCSAK---FIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLS--ERYLATGDFEGKLQIW 98 (98)
Q Consensus 24 ~fD~kWIP~SAr---fV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~--~r~lAtGdf~G~L~iw 98 (98)
+=-+.|=|-+++ +|||= ..+.|++|+++.+.-+-+ ...++. .+||.++.. -.-++.|+ |.|++|
T Consensus 127 I~qVlWHPl~~~ds~LVVLt----sD~~Ir~yDl~~s~~~P~-~L~k~~----~~fg~d~~~~ev~S~~Fg~--~~lTLY 195 (452)
T 3pbp_A 127 IKKVLFHPKSYRDSCIVVLK----EDDTITMFDILNSQEKPI-VLNKPN----NSFGLDARVNDITDLEFSK--DGLTLY 195 (452)
T ss_dssp EEEEEECTTBGGGCEEEEEE----TTSCEEEEETTCTTSCCE-EESCCC----SEEESCSSCCCEEEEEECT--TSSCEE
T ss_pred eeEEEeccccCCCCeEEEEe----cCCEEEEEEcccCCCCCc-chhccc----cccCCCcccceEEEEEEcC--CCcEEE
Confidence 566889999886 77765 789999999998543222 333333 245554322 22444454 455554
No 177
>3kvp_A Uncharacterized protein YMZC; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.40A {Bacillus subtilis}
Probab=55.44 E-value=11 Score=24.25 Aligned_cols=35 Identities=29% Similarity=0.434 Sum_probs=23.5
Q ss_pred ecCCccEEEEccccCC---cccEEEEEecC--CceeEEEEe
Q psy9278 30 MPCSAKFIVLGMKPKG---TGSIQMYEIND--GQPELVKTV 65 (98)
Q Consensus 30 IP~SArfV~lG~~prg---tG~iqIyeL~~--~~l~~~~e~ 65 (98)
+|+... |-||..-=| .|.|+||..+. ++++|++|.
T Consensus 19 ~pqtss-vqLe~nhFgv~e~g~iKIykyde~tNeI~LkKE~ 58 (72)
T 3kvp_A 19 TPQPTS-FPLEHNHFGVMEDGYIKIYEYNESRNEVKLKKEY 58 (72)
T ss_dssp -CCCEE-EECSTTEEEEEETTEEEEEEEETTTTEEEEEEEE
T ss_pred ccccce-eeecCCEEEEEeCCEEEEEEeCCCCCeEEEEEee
Confidence 455555 555543322 78899999965 589999986
No 178
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=48.23 E-value=33 Score=30.64 Aligned_cols=41 Identities=22% Similarity=0.412 Sum_probs=32.5
Q ss_pred ccEEEEccc---c----CCcccEEEEEecCCceeEEEEecccCceeee
Q psy9278 34 AKFIVLGMK---P----KGTGSIQMYEINDGQPELVKTVEKPNAFKCG 74 (98)
Q Consensus 34 ArfV~lG~~---p----rgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~ 74 (98)
..|++||-. | -..|.|.||++.+++|+++.+.|-+.++-|.
T Consensus 844 ~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al 891 (1158)
T 3ei3_A 844 NTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSM 891 (1158)
T ss_dssp CCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEE
T ss_pred CEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEE
Confidence 468888852 2 1589999999999999999999877666553
No 179
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=47.22 E-value=6.7 Score=36.45 Aligned_cols=15 Identities=27% Similarity=0.831 Sum_probs=11.2
Q ss_pred eeeeeeecCCccEEE
Q psy9278 24 LFDCKWMPCSAKFIV 38 (98)
Q Consensus 24 ~fD~kWIP~SArfV~ 38 (98)
-||+.||||||++..
T Consensus 1253 ~~~~~~~~~~~~~~~ 1267 (1289)
T 3avx_A 1253 KFDIQYIACSSRVLA 1267 (1289)
T ss_dssp EEEEEEEECCCC---
T ss_pred ceeEEEeeccceecC
Confidence 499999999999864
No 180
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=46.25 E-value=39 Score=24.73 Aligned_cols=37 Identities=22% Similarity=0.521 Sum_probs=30.4
Q ss_pred eeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEe
Q psy9278 24 LFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTV 65 (98)
Q Consensus 24 ~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~ 65 (98)
++.+.|-|.-.++++.+ . |.|.||++..++|++++.+
T Consensus 307 p~~ia~spdg~~l~v~n----~-~~v~v~D~~t~~l~~~~~i 343 (361)
T 2oiz_A 307 ALSMTIDQQRNLMLTLD----G-GNVNVYDISQPEPKLLRTI 343 (361)
T ss_dssp CCEEEEETTTTEEEEEC----S-SCEEEEECSSSSCEEEEEE
T ss_pred eeEEEECCCCCEEEEeC----C-CeEEEEECCCCcceeeEEe
Confidence 88888999877555444 3 9999999999988999886
No 181
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=41.33 E-value=1e+02 Score=22.46 Aligned_cols=46 Identities=13% Similarity=0.189 Sum_probs=28.0
Q ss_pred cccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 46 TGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 46 tG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
.+.+.+|++..+ ++++.++-.. .....|-+. .+.|++++. |.|.||
T Consensus 285 ~~~v~viD~~t~--~~v~~i~~~~-p~~ia~spd---g~~l~v~n~-~~v~v~ 330 (361)
T 2oiz_A 285 AAEIWVMDTKTK--QRVARIPGRD-ALSMTIDQQ---RNLMLTLDG-GNVNVY 330 (361)
T ss_dssp CSEEEEEETTTT--EEEEEEECTT-CCEEEEETT---TTEEEEECS-SCEEEE
T ss_pred CceEEEEECCCC--cEEEEEecCC-eeEEEECCC---CCEEEEeCC-CeEEEE
Confidence 457888887766 4566665444 444455332 346666665 888886
No 182
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=40.54 E-value=43 Score=26.64 Aligned_cols=44 Identities=11% Similarity=-0.018 Sum_probs=34.5
Q ss_pred ceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEec
Q psy9278 23 QLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVE 66 (98)
Q Consensus 23 T~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e 66 (98)
++..+.|=|.+.++++..+.+.--+.|.+|++..++++++++.+
T Consensus 364 ~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~~l~~~~ 407 (695)
T 2bkl_A 364 AASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSELWAKVD 407 (695)
T ss_dssp EECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEEEEEECC
T ss_pred EEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEEecCC
Confidence 34455566777788888888888899999999999998888654
No 183
>1i2h_A PSD-ZIP45(homer-1C/VESL-1L); enabled VAsp homology 1 domain, signaling protein; 1.80A {Rattus norvegicus} SCOP: b.55.1.4
Probab=39.29 E-value=71 Score=23.00 Aligned_cols=44 Identities=14% Similarity=0.285 Sum_probs=28.3
Q ss_pred eeecCCcc-EEEEccccCCcccEEEEEecCCceeEEEEecccCce
Q psy9278 28 KWMPCSAK-FIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAF 71 (98)
Q Consensus 28 kWIP~SAr-fV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~ 71 (98)
+|+|.+.- .+|.--+-.+.+.++|+.+.+.++-+-.++-+.--+
T Consensus 28 ~WvP~g~~~~~V~i~~d~~rnsyRIvg~~d~kvvinc~I~~~l~Y 72 (168)
T 1i2h_A 28 NWVPTSKHAVTVSYFYDSTRNVYRIISLDGSKAIINSTITPNMTF 72 (168)
T ss_dssp CSEESCSSCEEEEEEEETTTTEEEEEEEETTEEEEEEECCTTCCE
T ss_pred ceeecCCCCeEEEEEEcCCCCEEEEEEccCCEEEEecEecCCcEE
Confidence 59993322 333334566677899999997776666666555444
No 184
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4
Probab=38.30 E-value=44 Score=22.41 Aligned_cols=44 Identities=9% Similarity=0.218 Sum_probs=25.7
Q ss_pred eeecCCccEEEEc----cccCCcccEEEEEecCCceeEEEEecccCce
Q psy9278 28 KWMPCSAKFIVLG----MKPKGTGSIQMYEINDGQPELVKTVEKPNAF 71 (98)
Q Consensus 28 kWIP~SArfV~lG----~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~ 71 (98)
+|+|...--+++- -+-.+++.++|+.+...+-+++-|.|--..+
T Consensus 22 ~W~~~g~G~~~l~~V~i~~~~~~~~~Riv~~~~~~~~vi~n~~i~~~~ 69 (130)
T 1qc6_A 22 KWVPIKPGQQGFSRINIYHNTASSTFRVVGVKLQDQQVVINYSIVKGL 69 (130)
T ss_dssp EEEECC-----CEEEEEEEETTTTEEEEEEECTTTCCEEEEEECCTTC
T ss_pred ceeECCCCceeeeEEEEEecCCCcEEEEEEEeCCCCeEEEeeEEeCCc
Confidence 8999873222211 2223489999999965555666666644444
No 185
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=37.87 E-value=1.5e+02 Score=23.48 Aligned_cols=70 Identities=9% Similarity=0.096 Sum_probs=42.1
Q ss_pred cCCcceeeeeeecCCccEEEEccccCCcc--cEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCce
Q psy9278 19 SLDYQLFDCKWMPCSAKFIVLGMKPKGTG--SIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGK 94 (98)
Q Consensus 19 sl~yT~fD~kWIP~SArfV~lG~~prgtG--~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~ 94 (98)
.-++.+....|-|...+++... ...|.- .|.|+++..|++......+. .+-..+|-+ ..+.|+.+..++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~-~~~G~~~~~i~v~d~~tg~~~~~~~~~~--~~~~~~wsp---Dg~~l~~~~~~~~ 193 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGL-SASGSDWVTIKFMKVDGAKELPDVLERV--KFSCMAWTH---DGKGMFYNAYPQQ 193 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEE-EETTCSCEEEEEEETTTTEEEEEEEEEE--CSCCEEECT---TSSEEEEEECCCC
T ss_pred CCCEEEEEEEECCCCCEEEEEE-cCCCCceEEEEEEECCCCCCCcccccCc--ccceEEEEe---CCCEEEEEEECCc
Confidence 3456788899999987666544 444543 89999999988654321111 122233322 2467887777654
No 186
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=35.74 E-value=33 Score=25.02 Aligned_cols=60 Identities=12% Similarity=0.281 Sum_probs=42.1
Q ss_pred CCccceehhhhhcCCcc---ee--eeeeecCCccEEEEccccCCcccEEEEEe-cCCceeEEEEecccCceeeeec
Q psy9278 7 LDKPQIICLVEKSLDYQ---LF--DCKWMPCSAKFIVLGMKPKGTGSIQMYEI-NDGQPELVKTVEKPNAFKCGTF 76 (98)
Q Consensus 7 ~~kPQIIehi~ksl~yT---~f--D~kWIP~SArfV~lG~~prgtG~iqIyeL-~~~~l~~~~e~e~~~~~KC~TF 76 (98)
.++..|.+.+++ .+|. +. .++|=|. .-++...+.|+++ .+|+++.+.+++.|..+.|.-+
T Consensus 315 ~~~~~v~~aL~~-~~~~~~G~~G~~i~f~~~---------~~~~~~~~~i~~~~~~G~~~~v~~~~~~~~~~~~~~ 380 (391)
T 3eaf_A 315 RGGEALKEALEA-NTFDLGGITADTIDYEPG---------FHLAYRKVFIIKLGENGELQLMGKFEAPSQVDCARY 380 (391)
T ss_dssp HTHHHHHHHHHH-CCBCSTTCBSSCBCCBTT---------BCCCCCCEEEEEECTTSSEEEEEEECCCTTCCHHHH
T ss_pred CCHHHHHHHHHh-CCCCCCCccccceeeCCC---------CCCcceEEEEEEEecCCEEEEeeeecCccccchhhe
Confidence 456677777777 5665 22 2333332 1233567899999 8999999999999999999855
No 187
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=35.20 E-value=1.4e+02 Score=24.08 Aligned_cols=50 Identities=20% Similarity=0.278 Sum_probs=33.6
Q ss_pred CCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 44 KGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 44 rgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
++.|.+.|+++..+++ +.++......-+..|-+ ..|+|.+++.+|.+.+|
T Consensus 174 ~~~~~V~viD~~t~~v--~~~i~~g~~p~~v~~Sp---DGr~lyv~~~dg~V~vi 223 (567)
T 1qks_A 174 RDAGQIALIDGSTYEI--KTVLDTGYAVHISRLSA---SGRYLFVIGRDGKVNMI 223 (567)
T ss_dssp TTTTEEEEEETTTCCE--EEEEECSSCEEEEEECT---TSCEEEEEETTSEEEEE
T ss_pred CCCCeEEEEECCCCeE--EEEEeCCCCccceEECC---CCCEEEEEcCCCeEEEE
Confidence 4788999999877754 44554443444556633 34678888889988875
No 188
>2ntk_A IMP cyclohydrolase; alpha-beta-BETA-alpha NTN hydrolase fold; HET: IMP; 2.03A {Methanothermobacterthermautotrophicus} SCOP: d.153.2.1 PDB: 2ntl_A* 2ntm_A 1kuu_A
Probab=31.68 E-value=48 Score=25.21 Aligned_cols=42 Identities=10% Similarity=0.191 Sum_probs=29.2
Q ss_pred ccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecC
Q psy9278 34 AKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFN 77 (98)
Q Consensus 34 ArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFg 77 (98)
-||+|+|..+.|+ .+ .|-+......--.-++...+++-.-|-
T Consensus 24 GRgIvvG~t~~G~-~v-aY~I~sRSfpNR~~v~~~~~i~~~p~d 65 (222)
T 2ntk_A 24 GRILAVGRNSNGS-FV-AYRVSSRSFPNRTTSIQEERVAVVPVE 65 (222)
T ss_dssp CSEEEEEEETTEE-EE-EEEEECSSCCCEEEEEETTEEEEEECT
T ss_pred CCeEEEeeCCCCC-EE-EEEEecCCCCCeEEEEcCCeEEEeecC
Confidence 5999999999999 66 999877665533334455666655553
No 189
>3c5b_A Putative uncharacterized protein; capsid protein, HK97 fold, icosahedral virus; 4.50A {Enterobacteria phage EPSILON15}
Probab=31.57 E-value=32 Score=27.42 Aligned_cols=46 Identities=13% Similarity=0.216 Sum_probs=32.2
Q ss_pred ccceehhhh-hcCCcceeeeeeecCCccEEEEccccCCc-ccEEEEEecCCc
Q psy9278 9 KPQIICLVE-KSLDYQLFDCKWMPCSAKFIVLGMKPKGT-GSIQMYEINDGQ 58 (98)
Q Consensus 9 kPQIIehi~-ksl~yT~fD~kWIP~SArfV~lG~~prgt-G~iqIyeL~~~~ 58 (98)
++|||.--- -+=++++|-|+|-|++ +.|-+|+|. +=|+|-++.+.+
T Consensus 159 ~~~iidagGt~~~~tSI~~V~~g~~~----v~GiyPkg~~~Gl~v~dlG~~~ 206 (335)
T 3c5b_A 159 AENVFSAGGSGSTNTSIWFMSWGENT----AHMIYPEGMVAGFQHEDLGDDL 206 (335)
T ss_pred CCceEeccccCCCccEEEEEEEcCCc----eEEEeecCCcCCceEEeCCcee
Confidence 556765321 1346899999999995 899999884 447777665444
No 190
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=31.18 E-value=1.2e+02 Score=20.49 Aligned_cols=66 Identities=8% Similarity=0.006 Sum_probs=40.9
Q ss_pred eeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 24 LFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 24 ~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
+-...|-|...++++++.. .|.|.+|..+.+ ++.... ......+..|.+. .+-+++..-++.|.+|
T Consensus 30 ~eg~~~d~~g~~l~~~~~~---~~~i~~~~~~~~-~~~~~~--~~~~~~~l~~~~d---g~l~v~~~~~~~i~~~ 95 (296)
T 3e5z_A 30 TEGPVYVPARSAVIFSDVR---QNRTWAWSDDGQ-LSPEMH--PSHHQNGHCLNKQ---GHLIACSHGLRRLERQ 95 (296)
T ss_dssp EEEEEEEGGGTEEEEEEGG---GTEEEEEETTSC-EEEEES--SCSSEEEEEECTT---CCEEEEETTTTEEEEE
T ss_pred ccCCeEeCCCCEEEEEeCC---CCEEEEEECCCC-eEEEEC--CCCCcceeeECCC---CcEEEEecCCCeEEEE
Confidence 5678999999878888743 567888888877 554432 3344566666443 2334433334556543
No 191
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=31.08 E-value=1.3e+02 Score=24.23 Aligned_cols=71 Identities=14% Similarity=0.215 Sum_probs=42.1
Q ss_pred eeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEEe--cccCceeeeecCCCCCCCceEEEeecC-ceEEeC
Q psy9278 24 LFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTV--EKPNAFKCGTFNASPLSERYLATGDFE-GKLQIW 98 (98)
Q Consensus 24 ~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~--e~~~~~KC~TFgaSsl~~r~lAtGdf~-G~L~iw 98 (98)
++|..|=|....|++.- ++.+.|.|+++..+++.-.-++ ..|++-+=..|- ..-..+..+|+.+. |.++++
T Consensus 344 ~~d~~~~pdgr~~~va~---~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~-~p~~g~v~~t~~~g~~~Vsvi 417 (567)
T 1qks_A 344 LHDGGLDGSHRYFITAA---NARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFV-HPTFGPVWATSHMGDDSVALI 417 (567)
T ss_dssp EEEEEECTTSCEEEEEE---GGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEE-ETTTEEEEEEEBSSSSEEEEE
T ss_pred ccCceECCCCCEEEEEe---CCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeE-CCCCCcEEEeCCCCCCeEEEe
Confidence 56788888665554433 3577799999998886655555 235432111221 11124566777765 777763
No 192
>1ddw_A GLGF-domain protein homer; pleckstrin homology domain fold, signaling protein; 1.70A {Rattus norvegicus} SCOP: b.55.1.4 PDB: 1ddv_A 2p8v_A 1i7a_A*
Probab=30.46 E-value=1e+02 Score=20.64 Aligned_cols=42 Identities=10% Similarity=0.287 Sum_probs=24.6
Q ss_pred eeecCCccEEEEc-cccCCcccEEEEEecCCceeEEEEecccC
Q psy9278 28 KWMPCSAKFIVLG-MKPKGTGSIQMYEINDGQPELVKTVEKPN 69 (98)
Q Consensus 28 kWIP~SArfV~lG-~~prgtG~iqIyeL~~~~l~~~~e~e~~~ 69 (98)
+|+|.+..-+.|- -+..+.+.++|+.+.+.++-+-.++-+.-
T Consensus 23 ~W~p~g~~~~~V~~~~d~~~~~yRIv~~~~~~vv~n~~i~~~l 65 (120)
T 1ddw_A 23 NWVPTSKHAVTVSYFYDSTRNVYRIISLDGSKAIINSTITPNM 65 (120)
T ss_dssp SEEESCSSCEEEEEEEETTTTEEEEEEEETTEEEEEEECCTTC
T ss_pred ceEeCCCCceEEEEEEcCCCCEEEEEEccCCEEEEeCEecCCc
Confidence 7999332223322 12334556999999877666666655443
No 193
>1evh_A WH1 domain, protein (MENA EVH1 domain); molecular recognition, actin dynamics, contractIle protein; 1.80A {Mus musculus} SCOP: b.55.1.4 PDB: 2xqn_M 2iyb_A
Probab=29.92 E-value=86 Score=20.59 Aligned_cols=40 Identities=23% Similarity=0.316 Sum_probs=22.4
Q ss_pred eeecCCc--cE--EE-EccccCCcccEEEEEecCCceeEEEEecc
Q psy9278 28 KWMPCSA--KF--IV-LGMKPKGTGSIQMYEINDGQPELVKTVEK 67 (98)
Q Consensus 28 kWIP~SA--rf--V~-lG~~prgtG~iqIyeL~~~~l~~~~e~e~ 67 (98)
+|+|.+. -+ |. +=..+|++=.|..+.|.++++-+-.++-+
T Consensus 22 ~W~p~~~~~g~s~V~~~~d~~~~~yrIv~~~l~~~~vv~~~~l~~ 66 (112)
T 1evh_A 22 KWVPAGGSTGFSRVHIYHHTGNNTFRVVGRKIQDHQVVINCAIPK 66 (112)
T ss_dssp EEEEGGGCCSCEEEEEEEETTTTEEEEEEEETTTCCEEEEEEECT
T ss_pred ceEECCCCCCceEEEEEEECCCCEEEEEEEECCCCcEEEeeEecC
Confidence 8999872 22 33 33335555445556666666555555533
No 194
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=28.04 E-value=73 Score=28.43 Aligned_cols=48 Identities=29% Similarity=0.401 Sum_probs=32.6
Q ss_pred EEEEccccCC--cccEEEEEecCCceeEEEEecccCceeee-ecCCCCCCCceEEEeecCc
Q psy9278 36 FIVLGMKPKG--TGSIQMYEINDGQPELVKTVEKPNAFKCG-TFNASPLSERYLATGDFEG 93 (98)
Q Consensus 36 fV~lG~~prg--tG~iqIyeL~~~~l~~~~e~e~~~~~KC~-TFgaSsl~~r~lAtGdf~G 93 (98)
-+|+| -||. +|.+-||..+.+.++...++.-.. -+ .||++ +|+|||||
T Consensus 400 ~~v~G-AP~~~~~G~V~i~~~~~~~~~~~~~~~g~~---~gs~fG~s------va~~Dvng 450 (1095)
T 3k6s_A 400 SLVLG-APRYQHTGKAVIFTQVSRQWRMKAEVTGTQ---IGSYFGAS------LCSVDVDS 450 (1095)
T ss_dssp EEEEE-ETTGGGTCEEEEEECCTTTCCEEEEECCSS---TTSCTTSC------EEEECSSS
T ss_pred EEEEE-cccccccceEEEEEecCCcceEEeecccCc---ccCcCCce------EEEEEeCC
Confidence 45666 4554 799999999988887777665321 12 35544 88999876
No 195
>3v4v_A Integrin alpha-4; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_A*
Probab=27.85 E-value=1.5e+02 Score=24.64 Aligned_cols=48 Identities=21% Similarity=0.431 Sum_probs=30.4
Q ss_pred EEEEccccC--CcccEEEEEecCCceeEEEEecccCceeee-ecCCCCCCCceEEEeecCc
Q psy9278 36 FIVLGMKPK--GTGSIQMYEINDGQPELVKTVEKPNAFKCG-TFNASPLSERYLATGDFEG 93 (98)
Q Consensus 36 fV~lG~~pr--gtG~iqIyeL~~~~l~~~~e~e~~~~~KC~-TFgaSsl~~r~lAtGdf~G 93 (98)
-+++| .|+ .+|.+-||..+.+.+....++.-.. -+ -||++ +|+|||||
T Consensus 234 DlvvG-AP~~~~~G~V~v~~~~~~~~~~~~~l~G~~---~g~~fG~s------va~~D~ng 284 (597)
T 3v4v_A 234 EVVGG-APQHEQIGKAYIFSIDEKELNILHEMKGKK---LGSYFGAS------VCAVDLNA 284 (597)
T ss_dssp EEEEE-ETTGGGTCEEEEEEECSSSEEEEEEEECSS---TTCCTTSE------EEEECTTC
T ss_pred EEEEe-cccccCCceEEEEecCCCceeEEEEecccc---cCCCCcce------EEEEeeCC
Confidence 35667 344 4799999999888887766654211 11 14443 67777766
No 196
>3t3p_A Integrin alpha-IIB; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3fcu_A* 3nif_A* 3nid_A* 3t3m_A* 3nig_A* 2vdr_A* 2vc2_A* 2vdk_A* 2vdm_A* 2vdn_A* 2vdl_A* 2vdp_A* 2vdq_A* 2vdo_A* 1txv_A* 1ty3_A* 1ty5_A* 1ty6_A* 1ty7_A* 1tye_A*
Probab=26.71 E-value=62 Score=26.17 Aligned_cols=47 Identities=17% Similarity=0.313 Sum_probs=27.6
Q ss_pred cEEEEccccCC---cccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCc
Q psy9278 35 KFIVLGMKPKG---TGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEG 93 (98)
Q Consensus 35 rfV~lG~~prg---tG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G 93 (98)
..+|+| -||. +|.+-||. +.++....++-... =.-||+ .+|+|||+|
T Consensus 251 ~~~vvG-AP~~~~~~G~V~i~~---~~~~~~~~l~G~q~--gs~fG~------sva~gDvNg 300 (457)
T 3t3p_A 251 TEYVVG-APTWSWTLGAVEILD---SYYQRLHRLRGEQM--ASYFGH------SVAVTDVNG 300 (457)
T ss_dssp CEEEEE-ETTHHHHTCEEEEEC---TTCCEEEEEECSST--TSCTTS------EEEEECCSS
T ss_pred eEEEEc-CCCCCCccceEEEEc---CCCeEEEEeccccc--CCCCcc------eEEEEEeCC
Confidence 367788 4654 69888884 45666665543221 012343 477888865
No 197
>2qrd_A SNF1-like protein kinase SSP2; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} SCOP: d.129.6.2 PDB: 2ooy_A* 2qr1_A* 2qrc_A* 2oox_A* 2qre_A*
Probab=26.55 E-value=61 Score=22.52 Aligned_cols=27 Identities=22% Similarity=0.661 Sum_probs=19.6
Q ss_pred cceeeeeeecCCc------cEEEEccccCCcccEEEEEecCC
Q psy9278 22 YQLFDCKWMPCSA------KFIVLGMKPKGTGSIQMYEINDG 57 (98)
Q Consensus 22 yT~fD~kWIP~SA------rfV~lG~~prgtG~iqIyeL~~~ 57 (98)
|++ .|+|.|.+. ..|=+ .||+|+++.+
T Consensus 56 y~I-k~R~~~~~~~~~~~~~~vkm--------~iQLYqv~~~ 88 (137)
T 2qrd_A 56 YTI-KSRWEIPHCKREGKNTYAYI--------ELQLYEVMPG 88 (137)
T ss_dssp GEE-EEEEECHHHHHTTCCEEEEE--------EEEEEEEETT
T ss_pred eEE-EEEEecCCCccccCCceEEE--------EEEEEEecCC
Confidence 666 789998763 34444 3999999876
No 198
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=25.53 E-value=84 Score=25.22 Aligned_cols=42 Identities=2% Similarity=-0.141 Sum_probs=34.1
Q ss_pred ceeeeeeecCCccEEEEccccCCcccEEEEEecCCceeEEEE
Q psy9278 23 QLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKT 64 (98)
Q Consensus 23 T~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e 64 (98)
++..+.|=|.+..+++..+.+.--+.|.+|++..++++++++
T Consensus 408 ~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~l~~ 449 (741)
T 1yr2_A 408 SASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKTTPWEP 449 (741)
T ss_dssp EEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEEEECSC
T ss_pred EEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEEec
Confidence 456666778888888888888888999999999999888766
No 199
>3rzi_A Probable 3-deoxy-D-arabino-heptulosonate 7-phosph synthase AROG; DAH7P synthase, shikimate pathway, aromatic biosynthesis; HET: PHE TRP; 1.95A {Mycobacterium tuberculosis} SCOP: c.1.10.8 PDB: 3kgf_A* 2b7o_A* 3nud_A* 3nue_A* 3nv8_A* 3pfp_A* 2w19_A 2w1a_A*
Probab=25.20 E-value=8.9 Score=32.14 Aligned_cols=39 Identities=18% Similarity=0.367 Sum_probs=34.4
Q ss_pred eeecCCccEEEEccccCCcccEEEEEecCCceeEEEEecccCceeee
Q psy9278 28 KWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCG 74 (98)
Q Consensus 28 kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~ 74 (98)
+|--+||-|+-+|++.|. |++--++..+.+..|-++|||
T Consensus 270 ~~Y~~SaH~lWIGeRTRq--------lDgAHVef~rgI~NPIGvKvG 308 (462)
T 3rzi_A 270 QLFDLSAHTVWIGERTRQ--------IDGAHIAFAQVIANPVGVKLG 308 (462)
T ss_dssp CEEETTCSEEEECTTTCC--------TTSHHHHHHHHCCSCEEEEEC
T ss_pred CccccccccceeccccCC--------CCccHHHHHhcCCCCeeEeEC
Confidence 588899999999999994 677778888899999999997
No 200
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=24.88 E-value=48 Score=22.33 Aligned_cols=26 Identities=12% Similarity=0.340 Sum_probs=20.6
Q ss_pred CcceeeeeeecCCccEEEEccccCCc
Q psy9278 21 DYQLFDCKWMPCSAKFIVLGMKPKGT 46 (98)
Q Consensus 21 ~yT~fD~kWIP~SArfV~lG~~prgt 46 (98)
+|--++++||-.+.-||++-...-..
T Consensus 28 ~fggv~I~WidDTsAlvvf~~~~~a~ 53 (101)
T 3ctr_A 28 AFGNIQISWIDDTSAFVSLSQPEQVK 53 (101)
T ss_dssp TSEEEEEEEEETTEEEEEEEEECHHH
T ss_pred ccCCEEEEEEcCCeEEEEecCHHHHH
Confidence 45678999999999999997655443
No 201
>1fdq_A Fatty acid-binding protein, brain; omega-3, long chain poly unsaturated fatty acid, lipid binding protein; HET: HXA; 2.10A {Homo sapiens} SCOP: b.60.1.2 PDB: 1fe3_A* 1jjx_A
Probab=24.62 E-value=1.3e+02 Score=19.87 Aligned_cols=30 Identities=27% Similarity=0.321 Sum_probs=18.2
Q ss_pred cEEEEccccCCcccEEEEEecCCceeEEEEe
Q psy9278 35 KFIVLGMKPKGTGSIQMYEINDGQPELVKTV 65 (98)
Q Consensus 35 rfV~lG~~prgtG~iqIyeL~~~~l~~~~e~ 65 (98)
++|.+ +.+.|...-.++++++++|.+....
T Consensus 90 kLv~~-q~~~g~~~~~~re~~g~~l~~t~~~ 119 (131)
T 1fdq_A 90 KLVHI-QKWDGKETNFVREIKDGKMVMTLTF 119 (131)
T ss_dssp EEEEE-EEETTEEEEEEEEEETTEEEEEEEE
T ss_pred EEEEE-EcCCCceEEEEEEEECCEEEEEEEE
Confidence 55654 4445655566677777776665554
No 202
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=24.17 E-value=93 Score=21.41 Aligned_cols=56 Identities=21% Similarity=0.330 Sum_probs=34.8
Q ss_pred ccEEEEccccCC--cccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCc
Q psy9278 34 AKFIVLGMKPKG--TGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEG 93 (98)
Q Consensus 34 ArfV~lG~~prg--tG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G 93 (98)
-+++++|..-.. ...+.+|++..++-+.+.....+.. .+++..+..+-++.|.+++
T Consensus 207 ~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~----~~~~~~~~~~i~v~GG~~~ 264 (301)
T 2vpj_A 207 DHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRC----YVGATVLRGRLYAIAGYDG 264 (301)
T ss_dssp TEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCB----SCEEEEETTEEEEECCBCS
T ss_pred CEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCccc----ceeEEEECCEEEEEcCcCC
Confidence 467788865432 4678999999988887765443321 1222334566777777764
No 203
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=23.52 E-value=82 Score=21.78 Aligned_cols=55 Identities=20% Similarity=0.352 Sum_probs=32.0
Q ss_pred cEEEEccc-cCCcccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEeecCc
Q psy9278 35 KFIVLGMK-PKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEG 93 (98)
Q Consensus 35 rfV~lG~~-prgtG~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G 93 (98)
+++++|.. ++....+.+|++..++-+.+.+...+. ..+++.....+-++.|.+++
T Consensus 17 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r----~~~~~~~~~~~lyv~GG~~~ 72 (302)
T 2xn4_A 17 LMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRR----CRAGMVYMAGLVFAVGGFNG 72 (302)
T ss_dssp EEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCC----BSCEEEEETTEEEEESCBCS
T ss_pred EEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCccc----ccceEEEECCEEEEEeCcCC
Confidence 67778764 344567889999888776665443222 11222234455666666554
No 204
>2le1_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, unknown function; NMR {Thermobifida fusca}
Probab=23.39 E-value=50 Score=21.08 Aligned_cols=31 Identities=16% Similarity=0.418 Sum_probs=24.4
Q ss_pred eeeecCCccEEEEccccCCcccEEEEEecCC
Q psy9278 27 CKWMPCSAKFIVLGMKPKGTGSIQMYEINDG 57 (98)
Q Consensus 27 ~kWIP~SArfV~lG~~prgtG~iqIyeL~~~ 57 (98)
-+|.|.-.+.-+++..+.+.|.+..+.+..|
T Consensus 28 ~~w~p~v~~~~~~~g~~~~~G~~r~~~~~~G 58 (151)
T 2le1_A 28 HRWHPQVSAPTLRGASPHTPGAERVFGAGTE 58 (151)
T ss_dssp GGTCTTCCCEEEESSCTTSTTCEEEESSSSS
T ss_pred HHhcCCceEEEEECCCCCCCCeEEEEEeCCC
Confidence 4799987777777766778899988887655
No 205
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=23.31 E-value=2e+02 Score=22.82 Aligned_cols=44 Identities=9% Similarity=0.096 Sum_probs=34.9
Q ss_pred ceeeeeeecCCccEEEEccccCCcccEEEEEecCCc--eeEEEEec
Q psy9278 23 QLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQ--PELVKTVE 66 (98)
Q Consensus 23 T~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~~~~--l~~~~e~e 66 (98)
++..+.|=|...++++..+.+.--+.|-+|++..++ ++++++.+
T Consensus 381 ~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~~~l~~~~ 426 (710)
T 2xdw_A 381 SVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEELEPRVFREVT 426 (710)
T ss_dssp EEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSCCCEEEEECC
T ss_pred eEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCccceEEeeecc
Confidence 455566667777888888888888999999999988 88888754
No 206
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=23.06 E-value=2.3e+02 Score=20.97 Aligned_cols=48 Identities=6% Similarity=-0.118 Sum_probs=27.9
Q ss_pred ccEEEEEecCCceeEEEEecccCceeeeecCCCCCCCceEEEee-cCceEEeC
Q psy9278 47 GSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGD-FEGKLQIW 98 (98)
Q Consensus 47 G~iqIyeL~~~~l~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGd-f~G~L~iw 98 (98)
+.|.|+++.. .++++.++-...--+..| |.-..+.|.++. .++.|.+|
T Consensus 298 ~~V~VID~~t--~~vv~~i~~g~~p~~i~~--s~Dg~~~l~v~~~~~~~V~Vi 346 (373)
T 2mad_H 298 KEVTSVTGLV--GQTSSQISLGHDVDAISV--AQDGGPDLYALSAGTEVLHIY 346 (373)
T ss_pred CeEEEEECCC--CEEEEEEECCCCcCeEEE--CCCCCeEEEEEcCCCCeEEEE
Confidence 4566666544 455556654443444455 333454677777 48888875
No 207
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=21.63 E-value=1.9e+02 Score=19.49 Aligned_cols=33 Identities=18% Similarity=0.369 Sum_probs=24.0
Q ss_pred ceeeeeeecCCccEEEEccccCCcccEEEEEec-CCce
Q psy9278 23 QLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEIN-DGQP 59 (98)
Q Consensus 23 T~fD~kWIP~SArfV~lG~~prgtG~iqIyeL~-~~~l 59 (98)
.+..+.|-|....+ +.+ .+.+.|.+|+++ .|++
T Consensus 173 ~~~gi~~s~dg~~l-v~~---~~~~~i~~~~~~~~g~~ 206 (296)
T 3e5z_A 173 KPNGLAFLPSGNLL-VSD---TGDNATHRYCLNARGET 206 (296)
T ss_dssp SEEEEEECTTSCEE-EEE---TTTTEEEEEEECSSSCE
T ss_pred CCccEEECCCCCEE-EEe---CCCCeEEEEEECCCCcC
Confidence 45778888888776 444 246789999997 5666
No 208
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=20.38 E-value=3.2e+02 Score=21.55 Aligned_cols=64 Identities=8% Similarity=-0.079 Sum_probs=38.4
Q ss_pred eeecCCccEEEEccccCCcccEEEEEecCCce----eEEEEecccCceeeeecCCCCCCCceEEEeecCceEEeC
Q psy9278 28 KWMPCSAKFIVLGMKPKGTGSIQMYEINDGQP----ELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98 (98)
Q Consensus 28 kWIP~SArfV~lG~~prgtG~iqIyeL~~~~l----~~~~e~e~~~~~KC~TFgaSsl~~r~lAtGdf~G~L~iw 98 (98)
-| |..- |++......+.+.|-++.++.++. .++.+. ....+.-..|. ..+-+++..-+|..+||
T Consensus 278 ~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~-~~~~l~~~~~~----~~~lv~~~~~dg~~~l~ 345 (695)
T 2bkl_A 278 HA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPED-SSASLLSVSIV----GGHLSLEYLKDATSEVR 345 (695)
T ss_dssp EE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCC-SSCEEEEEEEE----TTEEEEEEEETTEEEEE
T ss_pred Ee-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCC-CCCeEEEEEEE----CCEEEEEEEECCEEEEE
Confidence 36 5555 777766555678888888877762 333322 12334433442 35667777777777665
No 209
>3hx6_A Type 4 fimbrial biogenesis protein PILY1; beta propeller, pilus protein, cell adhesion; 2.10A {Pseudomonas aeruginosa}
Probab=20.34 E-value=2.9e+02 Score=23.32 Aligned_cols=56 Identities=18% Similarity=0.323 Sum_probs=32.7
Q ss_pred EEEEccccC---CcccEEEEEecCCceeEEEEeccc------CceeeeecCCCC----CCCceEEEeecCceE
Q psy9278 36 FIVLGMKPK---GTGSIQMYEINDGQPELVKTVEKP------NAFKCGTFNASP----LSERYLATGDFEGKL 95 (98)
Q Consensus 36 fV~lG~~pr---gtG~iqIyeL~~~~l~~~~e~e~~------~~~KC~TFgaSs----l~~r~lAtGdf~G~L 95 (98)
+|++|+-.+ ++++|=|+++..|++ +++++.+ +++ .+...-. -....+=+||..|+|
T Consensus 209 ~~vfG~GY~~~~~~~~Lyv~d~~tG~l--i~~i~~~~~~~~~~Gl--s~~~~~D~d~Dg~~D~~YaGDl~Gnl 277 (570)
T 3hx6_A 209 AVVTGNGYSSMNDKAALLIIDMETGAI--TRKLEVTGRTGVPNGL--SSPRLADNNSDGVADYAYAGDLQGNL 277 (570)
T ss_dssp EEEEECCBSCTTCCEEEEEEETTTCCE--EEEEEECCSTTSCCCE--EEEEEECTTSSSBCCEEEEEETTSEE
T ss_pred EEEEccccCCCCCccEEEEEECCCCce--EEEEecCCCCccCCcc--ccceEEecCCCCceeEEEEEeCCCcE
Confidence 688887654 467888888888874 4554432 111 0000000 112468889999987
No 210
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=20.10 E-value=44 Score=22.51 Aligned_cols=25 Identities=12% Similarity=0.352 Sum_probs=19.8
Q ss_pred CcceeeeeeecCCccEEEEccccCC
Q psy9278 21 DYQLFDCKWMPCSAKFIVLGMKPKG 45 (98)
Q Consensus 21 ~yT~fD~kWIP~SArfV~lG~~prg 45 (98)
+|--++++||-.+.-||++=...-.
T Consensus 38 ~fggv~I~WidDTsAlvvf~~~~~a 62 (100)
T 1whv_A 38 AFGNIQISWIDDTSAFVSLSQPEQV 62 (100)
T ss_dssp TTCSCCCEEEETTEEEEECSCHHHH
T ss_pred ccCCEEEEEEcCCeEEEEecCHHHH
Confidence 3557899999999999998755443
Done!