RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy9278
         (98 letters)



>gnl|CDD|220080 pfam08954, DUF1900, Domain of unknown function (DUF1900).  This
          domain is predominantly found in the structural protein
          coronin, and is duplicated in some sequences. It has no
          known function.
          Length = 136

 Score = 28.3 bits (64), Expect = 0.41
 Identities = 9/20 (45%), Positives = 13/20 (65%)

Query: 44 KGTGSIQMYEINDGQPELVK 63
          KG G+I+ YE+ D +P L  
Sbjct: 30 KGDGNIRYYEVTDEEPYLHY 49


>gnl|CDD|227202 COG4865, COG4865, Glutamate mutase epsilon subunit [Amino acid
           transport and metabolism].
          Length = 485

 Score = 26.8 bits (59), Expect = 2.0
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)

Query: 60  ELVKTVEKPNAFKCGTFNASPLSERYLATG--DFEG 93
            L +TV+KP   + GT +A  L+E  LA+G   FEG
Sbjct: 137 RLTETVQKPLQIRHGTPDARLLAEVSLASGFTSFEG 172


>gnl|CDD|235716 PRK06149, PRK06149, hypothetical protein; Provisional.
          Length = 972

 Score = 26.9 bits (60), Expect = 2.0
 Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 1/29 (3%)

Query: 59  PELVKTVEKPNAFKCGTFNASPLSERYLA 87
           P+ V  VE PN ++ G F  +  +  Y+ 
Sbjct: 702 PDWVHPVESPNTYR-GRFRGADSAADYVR 729


>gnl|CDD|238894 cd01913, protease_HslV, Protease HslV and the ATPase/chaperone
          HslU are part of an ATP-dependent proteolytic system
          that is the prokaryotic homolog of the proteasome. HslV
          is a dimer of hexamers (a dodecamer) that forms a
          central proteolytic chamber with active sites on the
          interior walls of the cavity. HslV shares significant
          sequence and structural similarity with the proteasomal
          beta-subunit and both are members of the Ntn-family of
          hydrolases.  HslV has a nucleophilic threonine residue
          at its N-terminus that is exposed after processing of
          the propeptide and is directly involved in active site
          catalysis.
          Length = 171

 Score = 26.0 bits (58), Expect = 2.9
 Identities = 20/55 (36%), Positives = 22/55 (40%), Gaps = 20/55 (36%)

Query: 56 DGQPELVKTVEKPNAFK----------CG----TFNASPLSERYLATGDFEGKLQ 96
          DGQ  L  TV K NA K           G    T +A  L ER      FE KL+
Sbjct: 17 DGQVTLGNTVMKGNARKVRRLYNGKVIAGFAGSTADAFTLFER------FEAKLE 65


>gnl|CDD|220399 pfam09783, Vac_ImportDeg, Vacuolar import and degradation
          protein.  Members of this family are involved in the
          negative regulation of gluconeogenesis. They are
          required for both proteosome-dependent and vacuolar
          catabolite degradation of fructose-1,6-bisphosphatase
          (FBPase), where they probably regulate FBPase targeting
          from the FBPase-containing vesicles to the vacuole.
          Length = 176

 Score = 25.3 bits (56), Expect = 4.5
 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 62 VKTVEKPNAFKCGTFNASPLSERY-LATGDFEG 93
          +KTV+ P++  CG      L++++   T  FEG
Sbjct: 26 IKTVDLPDSHLCGYLEIKGLTDQHPELTTFFEG 58


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.320    0.138    0.438 

Gapped
Lambda     K      H
   0.267   0.0742    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,695,810
Number of extensions: 364239
Number of successful extensions: 192
Number of sequences better than 10.0: 1
Number of HSP's gapped: 192
Number of HSP's successfully gapped: 5
Length of query: 98
Length of database: 10,937,602
Length adjustment: 64
Effective length of query: 34
Effective length of database: 8,098,946
Effective search space: 275364164
Effective search space used: 275364164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.2 bits)