RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9278
(98 letters)
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 325
Score = 28.3 bits (61), Expect = 0.13
Identities = 5/52 (9%), Positives = 18/52 (34%), Gaps = 1/52 (1%)
Query: 47 GSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98
+I+++++ + T++K + + +G L +
Sbjct: 273 ATIRVWDVTTSKCVQKWTLDK-QQLGNQQVGVVATGNGRIISLSLDGTLNFY 323
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 337
Score = 28.2 bits (61), Expect = 0.14
Identities = 9/78 (11%), Positives = 27/78 (34%), Gaps = 9/78 (11%)
Query: 21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASP 80
+ + K+ C F+ G + + G + ++ ++ +
Sbjct: 265 ESCVLSLKFAYCGKWFVSTGKD----NLLNAWRTPYGAS--IFQSKESSSVLSCDISVD- 317
Query: 81 LSERYLATGDFEGKLQIW 98
++Y+ TG + K ++
Sbjct: 318 --DKYIVTGSGDKKATVY 333
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 311
Score = 27.9 bits (60), Expect = 0.17
Identities = 5/52 (9%), Positives = 19/52 (36%), Gaps = 3/52 (5%)
Query: 47 GSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98
+I+++ + + + KT+ + +++ L + G +
Sbjct: 260 KTIKIWNVATLK--VEKTIPVGTRIEDQQLGIIW-TKQALVSISANGFINFV 308
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow
(Bos taurus) [TaxId: 9913]}
Length = 371
Score = 27.9 bits (60), Expect = 0.21
Identities = 6/74 (8%), Positives = 19/74 (25%), Gaps = 8/74 (10%)
Query: 26 DCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEK-PNAFKCGTFNASPLSER 84
W + + + +YE + + V +++ +
Sbjct: 12 CHAWNKDRTQIAICP----NNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPD---SN 64
Query: 85 YLATGDFEGKLQIW 98
+ T + +W
Sbjct: 65 RIVTCGTDRNAYVW 78
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 26.3 bits (56), Expect = 0.64
Identities = 12/80 (15%), Positives = 22/80 (27%), Gaps = 6/80 (7%)
Query: 21 DYQLFDCKWMPCSAKFIVLGMKPKGTGSIQMYEINDGQPELVKTVEKPNAFKCGTFNASP 80
+ + + ++ G P L+ + + N S
Sbjct: 308 KDFVLSVATTQNDEYILSGSK----DRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSS 363
Query: 81 LS--ERYLATGDFEGKLQIW 98
L ATG + K +IW
Sbjct: 364 LGPEYNVFATGSGDCKARIW 383
>d1r75a_ b.134.1.1 (A:) Unnamed hypothetical protein {Leishmania
major [TaxId: 5664]}
Length = 121
Score = 25.5 bits (56), Expect = 0.74
Identities = 2/19 (10%), Positives = 5/19 (26%)
Query: 67 KPNAFKCGTFNASPLSERY 85
++ T A +
Sbjct: 100 SVTGWRVDTLEARTAEDER 118
>d2fe0a1 b.134.1.1 (A:1-131) Small myristoylated protein 1, Smp-1
{Leishmania major [TaxId: 5664]}
Length = 131
Score = 23.6 bits (51), Expect = 4.6
Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 11/51 (21%)
Query: 47 GSIQMYEINDGQPELVKTVE----------KPNAFKCGTFNASPLSERYLA 87
G ++ + +G+ V + N FK +A PLSE Y
Sbjct: 75 GKTKLEQQENGEWVASVVVYPCETEMFIEGRVNGFKS-KMDALPLSEEYRQ 124
>d2fh1a1 d.109.1.1 (A:412-532) Gelsolin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 121
Score = 22.9 bits (49), Expect = 8.2
Identities = 7/22 (31%), Positives = 9/22 (40%)
Query: 41 MKPKGTGSIQMYEINDGQPELV 62
M GTG Q++ I V
Sbjct: 1 MDDDGTGQKQIWRIEGSNKVPV 22
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 23.2 bits (48), Expect = 8.8
Identities = 12/96 (12%), Positives = 25/96 (26%), Gaps = 14/96 (14%)
Query: 12 IICLVEKSLDYQLFDCKWMPCSAKFIVLGMKPKGT--------GSIQMYEINDGQPELVK 63
L + D +L + G + +++ +
Sbjct: 249 TCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA--DRAG 306
Query: 64 TVEK-PNAFKCGTFNASPLSERYLATGDFEGKLQIW 98
+ N C +ATG ++ L+IW
Sbjct: 307 VLAGHDNRVSCLGVTDD---GMAVATGSWDSFLKIW 339
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor
acetylhydrolase IB subunit alpha {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 317
Score = 23.2 bits (48), Expect = 9.1
Identities = 9/52 (17%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 47 GSIQMYEINDGQPELVKTVEKPNAFKCGTFNASPLSERYLATGDFEGKLQIW 98
+I+M++++ G L+ V N + F++ +++ + + L++W
Sbjct: 227 KTIKMWDVSTGMC-LMTLVGHDNWVRGVLFHSG---GKFILSCADDKTLRVW 274
Score = 22.8 bits (47), Expect = 9.8
Identities = 8/53 (15%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 47 GSIQMYEINDGQPELVKTVEKPNAF-KCGTFNASPLSERYLATGDFEGKLQIW 98
++++++ + + +KT+ F F+ + Y+ TG + +++W
Sbjct: 269 KTLRVWDYKNKRC--MKTLNAHEHFVTSLDFHKT---APYVVTGSVDQTVKVW 316
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 355
Score = 22.9 bits (47), Expect = 9.2
Identities = 3/17 (17%), Positives = 10/17 (58%)
Query: 82 SERYLATGDFEGKLQIW 98
+ Y+ TG + ++++
Sbjct: 22 EDNYVITGADDKMIRVY 38
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.138 0.438
Gapped
Lambda K H
0.267 0.0373 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 366,271
Number of extensions: 14803
Number of successful extensions: 50
Number of sequences better than 10.0: 1
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 22
Length of query: 98
Length of database: 2,407,596
Length adjustment: 60
Effective length of query: 38
Effective length of database: 1,583,796
Effective search space: 60184248
Effective search space used: 60184248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.8 bits)