BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy928
         (88 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9UJZ1|STML2_HUMAN Stomatin-like protein 2 OS=Homo sapiens GN=STOML2 PE=1 SV=1
          Length = 356

 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 43/55 (78%)

Query: 26  LDLVAKALETKDGRSAASLSIAEQYVKAFNELAKTNNTLIVPSDANNIASMVTQS 80
           + ++A AL   +G +AASL++AEQYV AF++LAK +NT+++PS+  ++ SMV Q+
Sbjct: 258 IRILAAALTQHNGDAAASLTVAEQYVSAFSKLAKDSNTILLPSNPGDVTSMVAQA 312


>sp|Q32LL2|STML2_BOVIN Stomatin-like protein 2 OS=Bos taurus GN=STOML2 PE=2 SV=1
          Length = 356

 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 43/55 (78%)

Query: 26  LDLVAKALETKDGRSAASLSIAEQYVKAFNELAKTNNTLIVPSDANNIASMVTQS 80
           + ++A AL   +G +AASL++AEQYV AF++LAK +NT+++PS+  ++ SMV Q+
Sbjct: 258 IRILAAALTQHNGDAAASLTVAEQYVSAFSKLAKDSNTILLPSNPGDVTSMVAQA 312


>sp|Q99JB2|STML2_MOUSE Stomatin-like protein 2 OS=Mus musculus GN=Stoml2 PE=1 SV=1
          Length = 353

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 44/55 (80%)

Query: 26  LDLVAKALETKDGRSAASLSIAEQYVKAFNELAKTNNTLIVPSDANNIASMVTQS 80
           + ++A AL   +G +AASL++AEQYV AF++LAK +NT+++PS+ +++ SMV Q+
Sbjct: 258 IRILAGALTQHNGDAAASLTVAEQYVSAFSKLAKDSNTVLLPSNPSDVTSMVAQA 312


>sp|Q4FZT0|STML2_RAT Stomatin-like protein 2 OS=Rattus norvegicus GN=Stoml2 PE=1 SV=1
          Length = 353

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 44/55 (80%)

Query: 26  LDLVAKALETKDGRSAASLSIAEQYVKAFNELAKTNNTLIVPSDANNIASMVTQS 80
           + ++A AL   +G +AASL++AEQYV AF++LAK +NT+++PS+ +++ SMV Q+
Sbjct: 258 IRILAGALTQHNGDAAASLTVAEQYVSAFSKLAKDSNTVLLPSNPSDVTSMVAQA 312


>sp|O60121|YH77_SCHPO Uncharacterized protein C16G5.07c OS=Schizosaccharomyces pombe
           (strain 972 / ATCC 24843) GN=SPBC16G5.07c PE=3 SV=1
          Length = 354

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 47/72 (65%), Gaps = 1/72 (1%)

Query: 10  AVATALLSVAEARAKSLDLVAKALETKD-GRSAASLSIAEQYVKAFNELAKTNNTLIVPS 68
           A A A+   A A A  + ++A +++ ++ G  A SL IA+QY+  F +LAK +N++IVP+
Sbjct: 257 AEAQAIREKASATASGIAVLADSIKKQEHGLEAVSLYIAQQYITNFGKLAKASNSMIVPA 316

Query: 69  DANNIASMVTQS 80
             ++++ MV Q+
Sbjct: 317 STSDVSGMVAQA 328


>sp|Q9BV44|THUM3_HUMAN THUMP domain-containing protein 3 OS=Homo sapiens GN=THUMPD3 PE=1
           SV=1
          Length = 507

 Score = 29.6 bits (65), Expect = 5.9,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 38  GRSAASLSIAEQYVKAFNELAKTNNTLIVPSDANNIASMVTQSSI 82
           G  A  +  A ++   F+ +A  NN L V   ANNIAS++T+S I
Sbjct: 329 GTGAIPIEGATEWSDCFH-IAGDNNPLAVNRAANNIASLLTKSQI 372


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.308    0.118    0.289 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,490,844
Number of Sequences: 539616
Number of extensions: 601815
Number of successful extensions: 2401
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 2393
Number of HSP's gapped (non-prelim): 28
length of query: 88
length of database: 191,569,459
effective HSP length: 58
effective length of query: 30
effective length of database: 160,271,731
effective search space: 4808151930
effective search space used: 4808151930
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)