Query psy928
Match_columns 88
No_of_seqs 116 out of 813
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 23:25:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy928.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/928hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2620|consensus 99.7 2.5E-16 5.4E-21 115.6 7.5 87 2-88 207-293 (301)
2 cd03407 Band_7_4 A subgroup of 99.3 3.6E-11 7.9E-16 87.1 8.7 76 5-80 185-261 (262)
3 PRK11029 FtsH protease regulat 98.1 1.3E-05 2.9E-10 60.7 8.0 60 6-70 260-320 (334)
4 TIGR01932 hflC HflC protein. H 98.0 2.5E-05 5.5E-10 58.4 7.2 59 7-70 251-310 (317)
5 TIGR01933 hflK HflK protein. H 97.9 6.6E-05 1.4E-09 54.1 7.6 60 5-69 191-251 (261)
6 COG0330 HflC Membrane protease 97.8 0.00011 2.3E-09 53.6 7.0 69 6-77 205-286 (291)
7 cd03403 Band_7_stomatin_like B 97.7 0.00024 5.3E-09 49.4 6.9 63 3-68 151-214 (215)
8 cd03405 Band_7_HflC Band_7_Hfl 97.3 0.00069 1.5E-08 48.0 5.8 47 5-56 194-240 (242)
9 cd03404 Band_7_HflK Band_7_Hfl 96.7 0.0055 1.2E-07 44.2 6.1 48 5-57 218-265 (266)
10 PRK10930 FtsH protease regulat 96.5 0.012 2.7E-07 46.0 7.1 21 48-68 325-345 (419)
11 KOG3090|consensus 96.2 0.01 2.2E-07 43.7 4.8 59 5-69 211-273 (290)
12 KOG2621|consensus 95.2 0.048 1E-06 40.9 4.9 63 4-70 210-274 (288)
13 cd03407 Band_7_4 A subgroup of 93.1 0.13 2.7E-06 37.3 3.5 31 4-34 173-203 (262)
14 KOG2620|consensus 92.0 0.27 5.8E-06 36.9 4.1 15 48-62 247-261 (301)
15 KOG3083|consensus 89.1 0.35 7.7E-06 35.6 2.4 59 6-69 201-263 (271)
16 COG2268 Uncharacterized protei 88.4 1.4 3E-05 35.9 5.6 54 4-59 418-471 (548)
17 cd03404 Band_7_HflK Band_7_Hfl 87.8 0.86 1.9E-05 32.7 3.8 31 5-35 196-226 (266)
18 COG0330 HflC Membrane protease 86.3 2.8 6.1E-05 30.4 5.8 32 4-35 192-223 (291)
19 cd03405 Band_7_HflC Band_7_Hfl 83.9 2.2 4.7E-05 30.0 4.2 29 6-34 173-201 (242)
20 TIGR01933 hflK HflK protein. H 83.3 2 4.2E-05 30.8 3.8 30 5-34 169-198 (261)
21 PRK11029 FtsH protease regulat 82.2 4 8.6E-05 31.1 5.2 30 5-34 237-266 (334)
22 TIGR01932 hflC HflC protein. H 80.2 4.9 0.00011 30.1 5.1 30 5-34 227-256 (317)
23 PRK10930 FtsH protease regulat 73.4 10 0.00022 29.9 5.3 61 7-69 289-356 (419)
24 PRK15322 invasion protein OrgB 73.2 17 0.00037 26.3 6.0 26 5-30 18-43 (210)
25 cd03403 Band_7_stomatin_like B 72.7 5 0.00011 27.6 3.2 24 4-27 163-186 (215)
26 KOG2668|consensus 59.6 25 0.00054 27.7 4.9 29 4-32 305-333 (428)
27 PRK01558 V-type ATP synthase s 54.6 14 0.0003 25.9 2.7 22 5-26 28-49 (198)
28 KOG2668|consensus 49.5 24 0.00053 27.8 3.5 23 9-31 299-321 (428)
29 PRK01558 V-type ATP synthase s 48.4 34 0.00075 23.9 3.9 21 5-25 39-59 (198)
30 cd03406 Band_7_3 A subgroup of 47.8 16 0.00034 27.2 2.2 21 5-25 186-206 (280)
31 PF06188 HrpE: HrpE/YscL/FliH 42.0 40 0.00088 23.5 3.4 25 4-28 35-59 (191)
32 PRK09098 type III secretion sy 40.2 33 0.00073 24.7 2.9 22 6-27 46-67 (233)
33 COG5546 Small integral membran 36.6 64 0.0014 19.8 3.2 33 43-83 21-53 (80)
34 PF03179 V-ATPase_G: Vacuolar 34.9 1.1E+02 0.0024 18.8 5.9 28 3-32 7-34 (105)
35 COG0623 FabI Enoyl-[acyl-carri 33.9 63 0.0014 24.1 3.4 58 29-87 24-85 (259)
36 COG4668 MtlA Mannitol/fructose 30.5 1.6E+02 0.0034 20.1 4.7 50 21-77 16-70 (142)
37 TIGR02499 HrpE_YscL_not type I 25.8 91 0.002 20.4 2.9 21 5-25 19-39 (166)
38 TIGR03825 FliH_bacil flagellar 24.7 83 0.0018 22.7 2.8 22 5-26 46-67 (255)
39 PF07084 Spot_14: Thyroid horm 24.3 64 0.0014 22.1 2.0 27 44-73 14-40 (160)
40 PF05067 Mn_catalase: Manganes 24.1 70 0.0015 24.1 2.3 40 29-69 160-205 (283)
41 PF01991 vATP-synt_E: ATP synt 24.1 96 0.0021 20.7 2.9 16 8-23 6-21 (198)
42 PRK08404 V-type ATP synthase s 22.8 1E+02 0.0022 19.4 2.6 6 7-12 10-15 (103)
43 PRK13428 F0F1 ATP synthase sub 20.1 4.1E+02 0.009 20.9 6.0 28 40-67 140-167 (445)
No 1
>KOG2620|consensus
Probab=99.66 E-value=2.5e-16 Score=115.58 Aligned_cols=87 Identities=31% Similarity=0.405 Sum_probs=81.6
Q ss_pred cchhcchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhHHHHHHHHHHHHHHhhccCCeEEecCCchhHHHHHHHHH
Q psy928 2 MLKKSPREAVATALLSVAEARAKSLDLVAKALETKDGRSAASLSIAEQYVKAFNELAKTNNTLIVPSDANNIASMVTQSS 81 (88)
Q Consensus 2 ~~~il~AegeAeai~~~AeA~Aeai~~i~~al~~~~g~~a~~l~la~qyi~al~~la~~~ntivlP~~~~~~~g~~~~~~ 81 (88)
++++..|.|++++++..|++++.++.++...+.+.+|.+|.+|.+++|||.+|+++++.+||+|+|++++++.+++++++
T Consensus 207 ~qr~n~a~Gea~ail~~A~a~a~~~a~~~~~l~~~~g~~aasl~~a~qyIgaf~~lak~sntv~lP~~pg~v~~mvaQa~ 286 (301)
T KOG2620|consen 207 RQRQNIADGEAEAILAFADAVAGTSAKLVMDLKQEGGVEAASLFDAEQYIGAFGKLAKKSNTVFLPHGPGDVRDMVAQAL 286 (301)
T ss_pred HHHHHHHhhHHHHHHHHhhcccchHHHHHHHHHHhcchhhHHHHHHHHHHHhhhhhcccCceEEecCCCCcHHHHHHHHH
Confidence 57788889999999999999999999999999988999999999999999999999999999999999999999999999
Q ss_pred HHhhhcC
Q psy928 82 IDSMEFN 88 (88)
Q Consensus 82 ~~~~~~~ 88 (88)
.+|+.++
T Consensus 287 ~~~~~~s 293 (301)
T KOG2620|consen 287 NGYKQLS 293 (301)
T ss_pred HHHHhhh
Confidence 9998764
No 2
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.26 E-value=3.6e-11 Score=87.14 Aligned_cols=76 Identities=14% Similarity=0.239 Sum_probs=54.7
Q ss_pred hcchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhHHHHHHHHHHHHHHhhccCCe-EEecCCchhHHHHHHHH
Q psy928 5 KSPREAVATALLSVAEARAKSLDLVAKALETKDGRSAASLSIAEQYVKAFNELAKTNNT-LIVPSDANNIASMVTQS 80 (88)
Q Consensus 5 il~AegeAeai~~~AeA~Aeai~~i~~al~~~~g~~a~~l~la~qyi~al~~la~~~nt-ivlP~~~~~~~g~~~~~ 80 (88)
+++|||+|++++..|++.++.+..+.++.....++++.+|++..+|+++++++++++|+ +|+|++..++.+++.++
T Consensus 185 ~~~Aeg~a~a~~~~A~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~e~~~~~~~~~~kviv~p~~~~~~~~~~~~~ 261 (262)
T cd03407 185 RLQGVGAAEQRQAIADGLRESILSLADAVPGMTAKDVMDLLLVNQYFDTLKAYGRSSSTVVFRPHGPGGAQDIYAQI 261 (262)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHhCCCCEEEecCCCccHHHHHHhc
Confidence 44455555555555555555555555554333456788899999999999999987765 89999999999988764
No 3
>PRK11029 FtsH protease regulator HflC; Provisional
Probab=98.14 E-value=1.3e-05 Score=60.68 Aligned_cols=60 Identities=17% Similarity=0.236 Sum_probs=48.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhHHHHHHHHHHHHHHhhccCC-eEEecCCc
Q psy928 6 SPREAVATALLSVAEARAKSLDLVAKALETKDGRSAASLSIAEQYVKAFNELAKTNN-TLIVPSDA 70 (88)
Q Consensus 6 l~AegeAeai~~~AeA~Aeai~~i~~al~~~~g~~a~~l~la~qyi~al~~la~~~n-tivlP~~~ 70 (88)
+.|+|++++.+++|+|+|++++.+++++... -.+....+|+++++++.++++ ++|+|.+.
T Consensus 260 ~~AeA~~~a~i~~aegeA~a~~~~~~a~~~~-----p~~~~~~~~lea~~~~~~~~~~~~vl~~~~ 320 (334)
T PRK11029 260 TLAEAERQGRIMRGEGDAEAAKLFADAFSQD-----PDFYAFIRSLRAYENSFSGNQDVMVLSPDS 320 (334)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-----HHHHHHHHHHHHHHHHhcCCCcEEEECCCh
Confidence 3477888888888999999999999998741 246678899999999998664 58899884
No 4
>TIGR01932 hflC HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)
Probab=98.01 E-value=2.5e-05 Score=58.36 Aligned_cols=59 Identities=19% Similarity=0.197 Sum_probs=44.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhHHHHHHHHHHHHHHhhccCC-eEEecCCc
Q psy928 7 PREAVATALLSVAEARAKSLDLVAKALETKDGRSAASLSIAEQYVKAFNELAKTNN-TLIVPSDA 70 (88)
Q Consensus 7 ~AegeAeai~~~AeA~Aeai~~i~~al~~~~g~~a~~l~la~qyi~al~~la~~~n-tivlP~~~ 70 (88)
.|||++++.+.+|+|+|++++.+++++... + .+.--.+|+++++++.++++ ++|+|.+.
T Consensus 251 ~aeA~a~a~~~~Aegea~a~~~~~~a~~~~--p---~~~~~~~~le~~~~~~~~~~~~~vl~~~~ 310 (317)
T TIGR01932 251 LSEAYRTARIIKGEGDAEAAKIYSDAYGKD--P---EFYSFWRSLEAYEKSFKDNQDEKVLSTDS 310 (317)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHccC--H---HHHHHHHHHHHHHHHhCCCCCEEEECCCc
Confidence 455667778888888888899888888742 2 33445799999999998776 58888773
No 5
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=97.91 E-value=6.6e-05 Score=54.08 Aligned_cols=60 Identities=5% Similarity=0.112 Sum_probs=45.6
Q ss_pred hcchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhHHHHHHHHHHHHHHhhccCCe-EEecCC
Q psy928 5 KSPREAVATALLSVAEARAKSLDLVAKALETKDGRSAASLSIAEQYVKAFNELAKTNNT-LIVPSD 69 (88)
Q Consensus 5 il~AegeAeai~~~AeA~Aeai~~i~~al~~~~g~~a~~l~la~qyi~al~~la~~~nt-ivlP~~ 69 (88)
+..|||.+++++..|+|+|+++..+.++.... + .+....+|+++++++.++.++ ++++.+
T Consensus 191 ~~~Aea~~~~~~~~a~g~a~~~~~~~~ay~~~--p---~~~~~~~~le~~~~~~~~~~~~~~~~~~ 251 (261)
T TIGR01933 191 IEEARGYKERRINRAKGDVARFTKLLAEYKKA--P---DVTRERLYLETMEKVLSNTRKVLLDDKK 251 (261)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhC--h---HHHHHHHHHHHHHHHHccCCeEEEECCC
Confidence 46777778888888888889988888888642 2 344567799999999876665 777655
No 6
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=0.00011 Score=53.62 Aligned_cols=69 Identities=29% Similarity=0.441 Sum_probs=45.0
Q ss_pred cchhhHHHHHHHHHHHHHHH----------HHHHHHHHhhcCcchhhHHHHHHHHHHHHHHhhccC--CeEEecCCchh-
Q psy928 6 SPREAVATALLSVAEARAKS----------LDLVAKALETKDGRSAASLSIAEQYVKAFNELAKTN--NTLIVPSDANN- 72 (88)
Q Consensus 6 l~AegeAeai~~~AeA~Aea----------i~~i~~al~~~~g~~a~~l~la~qyi~al~~la~~~--ntivlP~~~~~- 72 (88)
++|+|++++..+.++|.+++ ++.++++.. ..+++.+.+.++|++.+.+.++++ +++++|.+..+
T Consensus 205 ~~a~g~~~a~~i~aea~~~a~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~~p~~~~~~ 281 (291)
T COG0330 205 LRAEGEAEAAIILAEAEAEAEVIARAEADAAKIIAAALR---EAPAAPQALAQRYLEELLEIALAGNSKVVVVPNSAGGA 281 (291)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhhccHHHHHHHhhcc---cccchhHHHHHHHHHHHHHHhhCCCCeEEEecCCccch
Confidence 45555666666666666666 333333332 335567789999999999999874 34899998766
Q ss_pred HHHHH
Q psy928 73 IASMV 77 (88)
Q Consensus 73 ~~g~~ 77 (88)
+.+++
T Consensus 282 ~~~~~ 286 (291)
T COG0330 282 ILGLL 286 (291)
T ss_pred hhhhh
Confidence 34443
No 7
>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin local
Probab=97.65 E-value=0.00024 Score=49.42 Aligned_cols=63 Identities=19% Similarity=0.249 Sum_probs=50.5
Q ss_pred chhcchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhHHHHHHHHHHHHHHhhccCCe-EEecC
Q psy928 3 LKKSPREAVATALLSVAEARAKSLDLVAKALETKDGRSAASLSIAEQYVKAFNELAKTNNT-LIVPS 68 (88)
Q Consensus 3 ~~il~AegeAeai~~~AeA~Aeai~~i~~al~~~~g~~a~~l~la~qyi~al~~la~~~nt-ivlP~ 68 (88)
+....|+.++++.+..|++++++....+++..+... + ...++.+|++.++.++++.++ +++|.
T Consensus 151 ~~~~~A~~~~~a~i~~A~ge~~a~~~~aea~~~~~~-~--~~~~~~~~~e~~~~~~~~~~~~~~~~~ 214 (215)
T cd03403 151 AKQAEAEREKRAKIIEAEGERQAAILLAEAAKQAAI-N--PAALQLRELETLEEIAKEAASTVVFPA 214 (215)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcc-C--HHHHHHHHHHHHHHHHhccCCeEEeeC
Confidence 445678999999999999999999999999876321 1 234688999999999999987 55554
No 8
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=97.32 E-value=0.00069 Score=48.01 Aligned_cols=47 Identities=17% Similarity=0.087 Sum_probs=37.8
Q ss_pred hcchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhHHHHHHHHHHHHHH
Q psy928 5 KSPREAVATALLSVAEARAKSLDLVAKALETKDGRSAASLSIAEQYVKAFNE 56 (88)
Q Consensus 5 il~AegeAeai~~~AeA~Aeai~~i~~al~~~~g~~a~~l~la~qyi~al~~ 56 (88)
+..|||+|++++++|+|+|+++++++++++.. + .+....+|+++++.
T Consensus 194 ~~~Aea~a~a~~~~a~gea~a~~~~~~a~~~~--p---~~~~~~~~l~~~~~ 240 (242)
T cd03405 194 VILAEAYREAQEIRGEGDAEAARIYAEAYGKD--P---EFYAFYRSLEAYRN 240 (242)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC--H---HHHHHHHHHHHHHh
Confidence 56889999999999999999999999999752 2 34456788988874
No 9
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=96.73 E-value=0.0055 Score=44.16 Aligned_cols=48 Identities=13% Similarity=0.240 Sum_probs=30.7
Q ss_pred hcchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhHHHHHHHHHHHHHHh
Q psy928 5 KSPREAVATALLSVAEARAKSLDLVAKALETKDGRSAASLSIAEQYVKAFNEL 57 (88)
Q Consensus 5 il~AegeAeai~~~AeA~Aeai~~i~~al~~~~g~~a~~l~la~qyi~al~~l 57 (88)
+..|+|++++++..|+|++++++.+.++.+.. + ...+...|+++|.++
T Consensus 218 ~~~A~a~~~~~~~~ae~~a~~~~~~~~a~~~~--~---~~~~~~~~~~~~~~~ 265 (266)
T cd03404 218 IQEAEAYKEEVIAEAQGEAARFESLLAEYKKA--P---DVTRERLYLETMEEV 265 (266)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhC--h---HHHHHHHHHHHHHHh
Confidence 34455555666666666666777777777641 2 234677799998875
No 10
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=96.51 E-value=0.012 Score=45.96 Aligned_cols=21 Identities=10% Similarity=0.365 Sum_probs=15.8
Q ss_pred HHHHHHHHHhhccCCeEEecC
Q psy928 48 EQYVKAFNELAKTNNTLIVPS 68 (88)
Q Consensus 48 ~qyi~al~~la~~~ntivlP~ 68 (88)
.-|+|++.++..+.+.+|+..
T Consensus 325 RlYletme~vl~~~~kvivd~ 345 (419)
T PRK10930 325 RLYIETMEKVLGHTRKVLVND 345 (419)
T ss_pred HHHHHHHHHHHccCCEEEEeC
Confidence 459999999988766555533
No 11
>KOG3090|consensus
Probab=96.20 E-value=0.01 Score=43.68 Aligned_cols=59 Identities=24% Similarity=0.313 Sum_probs=45.1
Q ss_pred hcchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhHHHHHHHHHHHHHHh----hccCCeEEecCC
Q psy928 5 KSPREAVATALLSVAEARAKSLDLVAKALETKDGRSAASLSIAEQYVKAFNEL----AKTNNTLIVPSD 69 (88)
Q Consensus 5 il~AegeAeai~~~AeA~Aeai~~i~~al~~~~g~~a~~l~la~qyi~al~~l----a~~~ntivlP~~ 69 (88)
+-+|+-+++..+..||++|++-++|++++++. +.- +..+-|++-.++ ++++|.++++++
T Consensus 211 VekA~qek~~~ivrAqGEaksAqliGeAi~nn--~~f----i~Lrki~aAr~IA~tia~S~NkvyL~~~ 273 (290)
T KOG3090|consen 211 VEKAEQEKQSAIVRAQGEAKSAQLIGEAIKNN--PAF----ITLRKIEAAREIAQTIASSANKVYLSSD 273 (290)
T ss_pred hHHHHHhhhhhhhhhccchHHHHHHHHHHhCC--ccc----eeehhHHHHHHHHHHHhcCCCeEEeccc
Confidence 34788889999999999999999999999973 122 344556665544 567788999887
No 12
>KOG2621|consensus
Probab=95.16 E-value=0.048 Score=40.89 Aligned_cols=63 Identities=22% Similarity=0.342 Sum_probs=46.8
Q ss_pred hhcchhhHHHHHHHHHHHHHHHHHHHHHHHhh-cCcchhhHHHHHHHHHHHHHHhhccCC-eEEecCCc
Q psy928 4 KKSPREAVATALLSVAEARAKSLDLVAKALET-KDGRSAASLSIAEQYVKAFNELAKTNN-TLIVPSDA 70 (88)
Q Consensus 4 ~il~AegeAeai~~~AeA~Aeai~~i~~al~~-~~g~~a~~l~la~qyi~al~~la~~~n-tivlP~~~ 70 (88)
...+|..||.+..+.||++..+.+.+.++-.. ..++.+++| +|+..+..++.+.| |+++|-..
T Consensus 210 aeAeA~reA~Akviaaege~~as~al~~aa~v~~~sp~alqL----ryLqtl~sia~e~~~tivfP~p~ 274 (288)
T KOG2621|consen 210 AEAEATREARAKVIAAEGEKKASEALKEAADVISESPIALQL----RYLQTLNSIAAEKNSTIVFPLPI 274 (288)
T ss_pred chhhhhhhhhhhHHHHHhhhHHHHHHHHhhccccCCchhhhh----hhhhcchhhhcCCCCCcccCCCH
Confidence 34556667888889999999888887776543 244566655 89999999988775 69999553
No 13
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=93.07 E-value=0.13 Score=37.32 Aligned_cols=31 Identities=23% Similarity=0.097 Sum_probs=21.6
Q ss_pred hhcchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy928 4 KKSPREAVATALLSVAEARAKSLDLVAKALE 34 (88)
Q Consensus 4 ~il~AegeAeai~~~AeA~Aeai~~i~~al~ 34 (88)
.|.+|+|++++.++.|+|.|++....+++..
T Consensus 173 ~i~~A~~ea~a~~~~Aeg~a~a~~~~A~g~~ 203 (262)
T cd03407 173 DIKAAEADAEAKRLQGVGAAEQRQAIADGLR 203 (262)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4566777777777777777777777666654
No 14
>KOG2620|consensus
Probab=92.00 E-value=0.27 Score=36.92 Aligned_cols=15 Identities=7% Similarity=-0.015 Sum_probs=9.2
Q ss_pred HHHHHHHHHhhccCC
Q psy928 48 EQYVKAFNELAKTNN 62 (88)
Q Consensus 48 ~qyi~al~~la~~~n 62 (88)
.+|.++.+.++..++
T Consensus 247 asl~~a~qyIgaf~~ 261 (301)
T KOG2620|consen 247 ASLFDAEQYIGAFGK 261 (301)
T ss_pred HHHHHHHHHHHhhhh
Confidence 566666666655443
No 15
>KOG3083|consensus
Probab=89.05 E-value=0.35 Score=35.64 Aligned_cols=59 Identities=24% Similarity=0.335 Sum_probs=41.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhHHHHHHHHHHHHH----HhhccCCeEEecCC
Q psy928 6 SPREAVATALLSVAEARAKSLDLVAKALETKDGRSAASLSIAEQYVKAFN----ELAKTNNTLIVPSD 69 (88)
Q Consensus 6 l~AegeAeai~~~AeA~Aeai~~i~~al~~~~g~~a~~l~la~qyi~al~----~la~~~ntivlP~~ 69 (88)
-+||-++++-++.||+++++-++|++++...| .-- +-.+-+|+-+ .|+.+.|..++|+.
T Consensus 201 eKAeQqk~aavIsAEGds~aA~li~~sla~aG-~gL----ielrrlEAa~dia~~Ls~s~nv~YLp~g 263 (271)
T KOG3083|consen 201 EKAEQQKKAAVISAEGDSKAAELIANSLATAG-DGL----IELRRLEAAEDIAYQLSRSRNVTYLPAG 263 (271)
T ss_pred HHHhhhhhhheeecccchHHHHHHHHHHhhcC-Cce----eeehhhhhHHHHHHHHhcCCCceeccCC
Confidence 45777778888899999999999999998753 112 2224455544 45667788899955
No 16
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.41 E-value=1.4 Score=35.95 Aligned_cols=54 Identities=24% Similarity=0.281 Sum_probs=37.1
Q ss_pred hhcchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhHHHHHHHHHHHHHHhhc
Q psy928 4 KKSPREAVATALLSVAEARAKSLDLVAKALETKDGRSAASLSIAEQYVKAFNELAK 59 (88)
Q Consensus 4 ~il~AegeAeai~~~AeA~Aeai~~i~~al~~~~g~~a~~l~la~qyi~al~~la~ 59 (88)
++.+..++|++++.+++|+|++++.+++++...+...+.. +...-+++|..+++
T Consensus 418 ~~a~~~~~Aea~r~kG~AEAea~r~lAEa~~~~~~a~~a~--~~~~~vq~Lp~~~~ 471 (548)
T COG2268 418 QAAEIKAEAEAIREKGKAEAEAKRALAEAIQVLGDAAAAE--LFKALVQALPEVAE 471 (548)
T ss_pred HHHHHHhHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHH--HHHHHHHHHHHHHH
Confidence 4556778899999999999999999999998743221211 12244566665554
No 17
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=87.83 E-value=0.86 Score=32.71 Aligned_cols=31 Identities=23% Similarity=0.173 Sum_probs=21.0
Q ss_pred hcchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy928 5 KSPREAVATALLSVAEARAKSLDLVAKALET 35 (88)
Q Consensus 5 il~AegeAeai~~~AeA~Aeai~~i~~al~~ 35 (88)
+.+||+++++++..|+++|+++...+++..+
T Consensus 196 ~~eae~~a~~~~~~A~~ea~~~~~~A~a~~~ 226 (266)
T cd03404 196 INEAEAYANEVVPKARGEAARIIQEAEAYKE 226 (266)
T ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 4556666677777777777777777666554
No 18
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]
Probab=86.25 E-value=2.8 Score=30.40 Aligned_cols=32 Identities=25% Similarity=0.155 Sum_probs=27.9
Q ss_pred hhcchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy928 4 KKSPREAVATALLSVAEARAKSLDLVAKALET 35 (88)
Q Consensus 4 ~il~AegeAeai~~~AeA~Aeai~~i~~al~~ 35 (88)
.|++|||++++.++.|+|++++-.+++++...
T Consensus 192 ~i~~Ae~~~~~~~~~a~g~~~a~~i~aea~~~ 223 (291)
T COG0330 192 EILEAEGEAQAAILRAEGEAEAAIILAEAEAE 223 (291)
T ss_pred HHHHhHhHHhhhhhhhhhhHHHHHHHHHHHHH
Confidence 57899999999999999999999999888753
No 19
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=83.87 E-value=2.2 Score=30.03 Aligned_cols=29 Identities=21% Similarity=0.069 Sum_probs=18.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy928 6 SPREAVATALLSVAEARAKSLDLVAKALE 34 (88)
Q Consensus 6 l~AegeAeai~~~AeA~Aeai~~i~~al~ 34 (88)
.+|||++++.+..++|+++++...+++..
T Consensus 173 ~~ae~~~~a~~~~aea~~~~~~~~Aea~a 201 (242)
T cd03405 173 FRAEGEEEAERIRADADRERTVILAEAYR 201 (242)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666555544
No 20
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=83.33 E-value=2 Score=30.84 Aligned_cols=30 Identities=20% Similarity=0.175 Sum_probs=18.4
Q ss_pred hcchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy928 5 KSPREAVATALLSVAEARAKSLDLVAKALE 34 (88)
Q Consensus 5 il~AegeAeai~~~AeA~Aeai~~i~~al~ 34 (88)
+++|||+++.++..|+++++.+...+++..
T Consensus 169 ~~~ae~~~~~~~~~a~~~a~~~~~~Aea~~ 198 (261)
T TIGR01933 169 INEAEAYANEVVPKARGDAQRIIEEARGYK 198 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666555555443
No 21
>PRK11029 FtsH protease regulator HflC; Provisional
Probab=82.15 E-value=4 Score=31.13 Aligned_cols=30 Identities=17% Similarity=0.006 Sum_probs=23.2
Q ss_pred hcchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy928 5 KSPREAVATALLSVAEARAKSLDLVAKALE 34 (88)
Q Consensus 5 il~AegeAeai~~~AeA~Aeai~~i~~al~ 34 (88)
+++|||++++..+.++|+.++.+..+++-.
T Consensus 237 ~~~aege~~a~~~~a~A~~e~~~~~AeA~~ 266 (334)
T PRK11029 237 RHRSQGQEEAEKLRATADYEVTRTLAEAER 266 (334)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 567888888888888888888777777654
No 22
>TIGR01932 hflC HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)
Probab=80.22 E-value=4.9 Score=30.07 Aligned_cols=30 Identities=10% Similarity=0.058 Sum_probs=23.6
Q ss_pred hcchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy928 5 KSPREAVATALLSVAEARAKSLDLVAKALE 34 (88)
Q Consensus 5 il~AegeAeai~~~AeA~Aeai~~i~~al~ 34 (88)
..++||++++..+.++|++++...++++-.
T Consensus 227 ~~r~ege~~a~~i~a~A~~e~~~~~aeA~a 256 (317)
T TIGR01932 227 MHRSQGEEKAEEILGKAEYEVRKILSEAYR 256 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888888888888877754
No 23
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=73.42 E-value=10 Score=29.88 Aligned_cols=61 Identities=10% Similarity=0.135 Sum_probs=27.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhHHHHHHHHHHH-HHHhh------ccCCeEEecCC
Q psy928 7 PREAVATALLSVAEARAKSLDLVAKALETKDGRSAASLSIAEQYVKA-FNELA------KTNNTLIVPSD 69 (88)
Q Consensus 7 ~AegeAeai~~~AeA~Aeai~~i~~al~~~~g~~a~~l~la~qyi~a-l~~la------~~~ntivlP~~ 69 (88)
+|||.+++.+..|+++|++...|-.+... .++...-+|=.+-++. |++.- ++++..+||-+
T Consensus 289 ~AeAyr~~~i~~AeGda~rF~~i~~~Y~k--aP~vtr~RlYletme~vl~~~~kvivd~~~~~~~~lpl~ 356 (419)
T PRK10930 289 EARAYKAQTILEAQGEVARFAKLLPEYKA--APEITRERLYIETMEKVLGHTRKVLVNDKGGNLMVLPLD 356 (419)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHhh--CHHHHHHHHHHHHHHHHHccCCEEEEeCCCCeeEEeech
Confidence 34444444445555555554444444443 1344443333344442 33322 12345778766
No 24
>PRK15322 invasion protein OrgB; Provisional
Probab=73.16 E-value=17 Score=26.30 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=19.5
Q ss_pred hcchhhHHHHHHHHHHHHHHHHHHHH
Q psy928 5 KSPREAVATALLSVAEARAKSLDLVA 30 (88)
Q Consensus 5 il~AegeAeai~~~AeA~Aeai~~i~ 30 (88)
+.+|+.+|..++..|+.++|.|+..+
T Consensus 18 ~~qA~~kA~~ii~qA~~eaE~ir~~A 43 (210)
T PRK15322 18 EQQARRRAKRILRQAEEEAETLRMYA 43 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777888888888888777754
No 25
>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin local
Probab=72.65 E-value=5 Score=27.64 Aligned_cols=24 Identities=25% Similarity=0.120 Sum_probs=20.4
Q ss_pred hhcchhhHHHHHHHHHHHHHHHHH
Q psy928 4 KKSPREAVATALLSVAEARAKSLD 27 (88)
Q Consensus 4 ~il~AegeAeai~~~AeA~Aeai~ 27 (88)
.+.+|||++++.+..++|.++...
T Consensus 163 ~i~~A~ge~~a~~~~aea~~~~~~ 186 (215)
T cd03403 163 KIIEAEGERQAAILLAEAAKQAAI 186 (215)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHcc
Confidence 578999999999999999987643
No 26
>KOG2668|consensus
Probab=59.57 E-value=25 Score=27.72 Aligned_cols=29 Identities=28% Similarity=0.197 Sum_probs=17.7
Q ss_pred hhcchhhHHHHHHHHHHHHHHHHHHHHHH
Q psy928 4 KKSPREAVATALLSVAEARAKSLDLVAKA 32 (88)
Q Consensus 4 ~il~AegeAeai~~~AeA~Aeai~~i~~a 32 (88)
.+..|++||+.++..-+|+|-+|+..+.+
T Consensus 305 ~~~qaqAEA~~irk~geAEA~~ieA~aka 333 (428)
T KOG2668|consen 305 YNKQAQAEAELIRKQGEAEAFAIEADAKA 333 (428)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhhhhh
Confidence 45566666666666666666666655544
No 27
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=54.63 E-value=14 Score=25.87 Aligned_cols=22 Identities=27% Similarity=0.267 Sum_probs=11.2
Q ss_pred hcchhhHHHHHHHHHHHHHHHH
Q psy928 5 KSPREAVATALLSVAEARAKSL 26 (88)
Q Consensus 5 il~AegeAeai~~~AeA~Aeai 26 (88)
|..|+.+|+.|+..|+.+|+.|
T Consensus 28 i~eA~~eAe~Ii~eA~~eAe~i 49 (198)
T PRK01558 28 ILEAKEEAEEIIAKAEEEAKEL 49 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555443
No 28
>KOG2668|consensus
Probab=49.50 E-value=24 Score=27.77 Aligned_cols=23 Identities=22% Similarity=0.099 Sum_probs=11.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q psy928 9 EAVATALLSVAEARAKSLDLVAK 31 (88)
Q Consensus 9 egeAeai~~~AeA~Aeai~~i~~ 31 (88)
|++.+.....++|+|+.++++++
T Consensus 299 EAnk~~~~~qaqAEA~~irk~ge 321 (428)
T KOG2668|consen 299 EANKELYNKQAQAEAELIRKQGE 321 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Confidence 33444444455555555555543
No 29
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=48.45 E-value=34 Score=23.87 Aligned_cols=21 Identities=29% Similarity=0.208 Sum_probs=11.2
Q ss_pred hcchhhHHHHHHHHHHHHHHH
Q psy928 5 KSPREAVATALLSVAEARAKS 25 (88)
Q Consensus 5 il~AegeAeai~~~AeA~Aea 25 (88)
|..|+.+|+.|+..|+.+++-
T Consensus 39 i~eA~~eAe~i~~kAe~ea~~ 59 (198)
T PRK01558 39 IAKAEEEAKELKAKAEKEAND 59 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555543
No 30
>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=47.82 E-value=16 Score=27.20 Aligned_cols=21 Identities=19% Similarity=0.082 Sum_probs=16.0
Q ss_pred hcchhhHHHHHHHHHHHHHHH
Q psy928 5 KSPREAVATALLSVAEARAKS 25 (88)
Q Consensus 5 il~AegeAeai~~~AeA~Aea 25 (88)
+.+|||++.+.+..|+++|+-
T Consensus 186 ~~~ae~~~~~~~~~a~~~~~~ 206 (280)
T cd03406 186 EKEAETERKKAVIEAEKVAQV 206 (280)
T ss_pred HHHhhHHHHHHHHHHHHHhhH
Confidence 567888888888888887764
No 31
>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []. This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].
Probab=42.02 E-value=40 Score=23.51 Aligned_cols=25 Identities=24% Similarity=0.126 Sum_probs=17.9
Q ss_pred hhcchhhHHHHHHHHHHHHHHHHHH
Q psy928 4 KKSPREAVATALLSVAEARAKSLDL 28 (88)
Q Consensus 4 ~il~AegeAeai~~~AeA~Aeai~~ 28 (88)
.+..|+.+|+.|+..|+.+++.+..
T Consensus 35 IL~~A~~qA~~Il~~Ae~eAe~l~~ 59 (191)
T PF06188_consen 35 ILEDARQQAEQILQQAEEEAEALLE 59 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777788888777777777655
No 32
>PRK09098 type III secretion system protein HrpB; Validated
Probab=40.25 E-value=33 Score=24.74 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=11.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHH
Q psy928 6 SPREAVATALLSVAEARAKSLD 27 (88)
Q Consensus 6 l~AegeAeai~~~AeA~Aeai~ 27 (88)
.+|+.+|+.|+..|+++|+.|.
T Consensus 46 a~Ar~~A~~Il~~A~~~A~~I~ 67 (233)
T PRK09098 46 AAARARAERIVAEARAQAEAIL 67 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555443
No 33
>COG5546 Small integral membrane protein [Function unknown]
Probab=36.63 E-value=64 Score=19.85 Aligned_cols=33 Identities=21% Similarity=0.326 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHhhccCCeEEecCCchhHHHHHHHHHHH
Q psy928 43 SLSIAEQYVKAFNELAKTNNTLIVPSDANNIASMVTQSSID 83 (88)
Q Consensus 43 ~l~la~qyi~al~~la~~~ntivlP~~~~~~~g~~~~~~~~ 83 (88)
-|++|++-+..|+ |=+|+++.|+...+...+.+
T Consensus 21 ifllAQqll~~fG--------I~~~~nl~d~~n~i~~ll~l 53 (80)
T COG5546 21 IFLLAQQLLGWFG--------IKLPSNLADIANTIVTLLVL 53 (80)
T ss_pred HHHHHHHHHHHee--------eecchhHHHHHHHHHHHHHH
Confidence 3778998888877 66899988776666655544
No 34
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=34.87 E-value=1.1e+02 Score=18.83 Aligned_cols=28 Identities=14% Similarity=0.057 Sum_probs=15.8
Q ss_pred chhcchhhHHHHHHHHHHHHHHHHHHHHHH
Q psy928 3 LKKSPREAVATALLSVAEARAKSLDLVAKA 32 (88)
Q Consensus 3 ~~il~AegeAeai~~~AeA~Aeai~~i~~a 32 (88)
.+++.||-+|..|+..|+... ..++.+|
T Consensus 7 q~Ll~AE~eA~~iV~~Ar~~r--~~~lk~A 34 (105)
T PF03179_consen 7 QQLLEAEKEAQEIVEEARKER--EQRLKQA 34 (105)
T ss_dssp STHHHHHHHHHHHHHHHHHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 467778777776665444433 3444433
No 35
>COG0623 FabI Enoyl-[acyl-carrier-protein]
Probab=33.94 E-value=63 Score=24.12 Aligned_cols=58 Identities=26% Similarity=0.335 Sum_probs=37.4
Q ss_pred HHHHHhhcCcchhhHHHHHHHHHHHHHHhhccCC-eEEecCCchh---HHHHHHHHHHHhhhc
Q psy928 29 VAKALETKDGRSAASLSIAEQYVKAFNELAKTNN-TLIVPSDANN---IASMVTQSSIDSMEF 87 (88)
Q Consensus 29 i~~al~~~~g~~a~~l~la~qyi~al~~la~~~n-tivlP~~~~~---~~g~~~~~~~~~~~~ 87 (88)
|++++.+.|.+=+..| ..++.-....++++.-+ .+++|-|+++ +...+..+.+.|..+
T Consensus 24 IAk~l~~~GAeL~fTy-~~e~l~krv~~la~~~~s~~v~~cDV~~d~~i~~~f~~i~~~~g~l 85 (259)
T COG0623 24 IAKALAEQGAELAFTY-QGERLEKRVEELAEELGSDLVLPCDVTNDESIDALFATIKKKWGKL 85 (259)
T ss_pred HHHHHHHcCCEEEEEe-ccHHHHHHHHHHHhhccCCeEEecCCCCHHHHHHHHHHHHHhhCcc
Confidence 4566666554444444 24566677778888775 4999999875 566666666665543
No 36
>COG4668 MtlA Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]
Probab=30.49 E-value=1.6e+02 Score=20.10 Aligned_cols=50 Identities=18% Similarity=0.347 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHhhcCcchhhHHHHHHHHHHHHHHhhccCCe-----EEecCCchhHHHHH
Q psy928 21 ARAKSLDLVAKALETKDGRSAASLSIAEQYVKAFNELAKTNNT-----LIVPSDANNIASMV 77 (88)
Q Consensus 21 A~Aeai~~i~~al~~~~g~~a~~l~la~qyi~al~~la~~~nt-----ivlP~~~~~~~g~~ 77 (88)
-.-++|+.+++++.+.|. +...|++++-+-=+-.+| |-+|..+.+....+
T Consensus 16 nK~eAi~~~g~~Lv~~G~-------V~~~Yl~~m~eRE~~~STyLGngIAIPHgt~e~k~~V 70 (142)
T COG4668 16 NKEEAIEFAGEALVEGGY-------VEPGYLDAMLEREKQVSTYLGNGIAIPHGTGEAKDLV 70 (142)
T ss_pred CHHHHHHHHHHHHHHCCC-------CCHHHHHHHHHHHHHHHHhhcCceecCCCChHHHHHH
Confidence 345789999999998653 355789887755443333 78898877654444
No 37
>TIGR02499 HrpE_YscL_not type III secretion apparatus protein, HrpE/YscL family. This model is related to Pfam model pfam06188, but is broader. pfam06188 describes HrpE-like proteins, components of bacterial type III secretion systems primarily in bacteria that infect plants. This model includes also the homologous proteins of animal pathogens, such as YscL of Yersinia pestis. This model excludes the related protein FliH of the bacterial flagellar apparatus (see pfam02108)
Probab=25.75 E-value=91 Score=20.37 Aligned_cols=21 Identities=29% Similarity=0.283 Sum_probs=12.1
Q ss_pred hcchhhHHHHHHHHHHHHHHH
Q psy928 5 KSPREAVATALLSVAEARAKS 25 (88)
Q Consensus 5 il~AegeAeai~~~AeA~Aea 25 (88)
+..|+.+|++|+..|+.+++.
T Consensus 19 l~~A~~~a~~i~~~A~~~~e~ 39 (166)
T TIGR02499 19 LAAARQRAEAILADAEEEAEA 39 (166)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666555544
No 38
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=24.75 E-value=83 Score=22.69 Aligned_cols=22 Identities=32% Similarity=0.363 Sum_probs=14.9
Q ss_pred hcchhhHHHHHHHHHHHHHHHH
Q psy928 5 KSPREAVATALLSVAEARAKSL 26 (88)
Q Consensus 5 il~AegeAeai~~~AeA~Aeai 26 (88)
+..|+-+|+.|+..|+++|+.+
T Consensus 46 l~~Ar~eA~~Ii~~A~~~a~~~ 67 (255)
T TIGR03825 46 LEKAEAEAAQIIEQAEAQAAAI 67 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777777777665
No 39
>PF07084 Spot_14: Thyroid hormone-inducible hepatic protein Spot 14; InterPro: IPR009786 The Spot 14 family includes thyroid hormone-inducible hepatic protein (Spot 14), Mid1-interacting protein and related sequneces. Mainly expressed in tissues that synthesise triglycerides, the mRNA coding for Spot 14 has been shown to be increased in rat liver by insulin, dietary carbohydrates, glucose in hepatocyte culture medium, as well as thyroid hormone. In contrast, dietary fats and polyunsaturated fatty acids, have been shown to decrease the amount of Spot 14 mRNA, while an elevated level of cAMP acts as a dominant negative factor. In addition, liver-specific factors or chromatin organisation of the gene have been shown to contribute to the regulation of its expression []. Spot 14 protein is thought to be required for induction of hepatic lipogenesis []. Mid1-interacting protein is involved in stabilisation of microtubules [].; PDB: 3ONT_A.
Probab=24.35 E-value=64 Score=22.14 Aligned_cols=27 Identities=33% Similarity=0.636 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHhhccCCeEEecCCchhH
Q psy928 44 LSIAEQYVKAFNELAKTNNTLIVPSDANNI 73 (88)
Q Consensus 44 l~la~qyi~al~~la~~~ntivlP~~~~~~ 73 (88)
|...++|+.+...|=+ ||++|+=+.|+
T Consensus 14 ~~~M~rf~~av~nMdq---tVmvPslLrDv 40 (160)
T PF07084_consen 14 LNAMERFIKAVNNMDQ---TVMVPSLLRDV 40 (160)
T ss_dssp HHHHHHHHHHHHHHHH---H-S-GGGGTT-
T ss_pred HHHHHHHHHHHhcccC---eeehhhhhhCC
Confidence 5668999999998855 79999877663
No 40
>PF05067 Mn_catalase: Manganese containing catalase; InterPro: IPR007760 Catalases (1.11.1.6 from EC) are antioxidant enzymes that catalyse the conversion of hydrogen peroxide to water and molecular oxygen. Hydrogen peroxide is produced as a consequence of oxidative cellular metabolism and can be converted to the highly reactive hydroxyl radical via transition metals, this radical being able to damage a wide variety of molecules within a cell, leading to oxidative stress and cell death. Catalases act to neutralise hydrogen peroxide toxicity, and are produced by all aerobic organisms ranging from bacteria to man. There are three structurally independent classes of catalases: ubiquitous mono-functional haem-containing catalases (IPR002226 from INTERPRO), bifunctional haem-containing catalase-peroxidases that are closely related to plant peroxidases (IPR000763 from INTERPRO), and non-haem manganese-containing catalases []. This entry represents the non-haem Mn-catalases, which are found in several bacterial species []. The structure of the Mn catalase from Lactobacillus plantarum reveals a homo-hexamer, where each subunit contains a dimanganese active site that is accessed by a single substrate channel []. The dimanganese active site performs a two-electron catalytic cycle that alternately oxidises and reduces the dimanganese atoms in a manner that is similar to its haem-counterpart found in other catalases.; PDB: 1JKV_D 1JKU_D 1O9I_E 2CWL_A 2V8T_B 2V8U_A.
Probab=24.09 E-value=70 Score=24.07 Aligned_cols=40 Identities=23% Similarity=0.281 Sum_probs=27.3
Q ss_pred HHHHHhhcCcchhhHHHHHH------HHHHHHHHhhccCCeEEecCC
Q psy928 29 VAKALETKDGRSAASLSIAE------QYVKAFNELAKTNNTLIVPSD 69 (88)
Q Consensus 29 i~~al~~~~g~~a~~l~la~------qyi~al~~la~~~ntivlP~~ 69 (88)
+-+...+|+-.+.+.|+++. +|.++|..+.... +.++|..
T Consensus 160 L~~mTdDpgvkd~L~FLl~Re~vH~~~f~~ALe~l~~~~-~~~~P~p 205 (283)
T PF05067_consen 160 LYEMTDDPGVKDMLSFLLAREIVHQQQFGKALEELQENF-GKMVPIP 205 (283)
T ss_dssp HHTT---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-GGGSSSS
T ss_pred HHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-CccCCCC
Confidence 34445557778889998874 5889999887766 5567765
No 41
>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.
Probab=24.07 E-value=96 Score=20.75 Aligned_cols=16 Identities=19% Similarity=0.281 Sum_probs=6.5
Q ss_pred hhhHHHHHHHHHHHHH
Q psy928 8 REAVATALLSVAEARA 23 (88)
Q Consensus 8 AegeAeai~~~AeA~A 23 (88)
|+.++++|+..|+.++
T Consensus 6 A~~ka~~I~~eA~~e~ 21 (198)
T PF01991_consen 6 AQEKAEEIIAEAQEEA 21 (198)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444333333
No 42
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=22.80 E-value=1e+02 Score=19.42 Aligned_cols=6 Identities=33% Similarity=0.141 Sum_probs=2.2
Q ss_pred chhhHH
Q psy928 7 PREAVA 12 (88)
Q Consensus 7 ~AegeA 12 (88)
.||.+.
T Consensus 10 ~aE~~~ 15 (103)
T PRK08404 10 KAEKEA 15 (103)
T ss_pred HHHHHH
Confidence 333333
No 43
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=20.08 E-value=4.1e+02 Score=20.91 Aligned_cols=28 Identities=11% Similarity=0.334 Sum_probs=19.3
Q ss_pred hhhHHHHHHHHHHHHHHhhccCCeEEec
Q psy928 40 SAASLSIAEQYVKAFNELAKTNNTLIVP 67 (88)
Q Consensus 40 ~a~~l~la~qyi~al~~la~~~ntivlP 67 (88)
+..+-.+..+||+.++.+..+...+=.|
T Consensus 140 ~~~~~~lId~~i~~l~~~~~~~~~~~~~ 167 (445)
T PRK13428 140 PAQQSATVDRFLDELDAMAPSTADVDYP 167 (445)
T ss_pred HHHHHHHHHHHHHHhhccCCCchhhcCc
Confidence 3445678899999999987755444344
Done!