Query psy928
Match_columns 88
No_of_seqs 116 out of 813
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 23:25:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy928.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/928hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bk6_A PH stomatin; archaea, t 97.5 7E-05 2.4E-09 50.6 3.0 57 3-63 123-180 (188)
2 3v6i_A V-type ATP synthase sub 70.3 4.9 0.00017 26.5 3.7 19 6-24 7-25 (187)
3 2kk7_A V-type ATP synthase sub 68.5 9.4 0.00032 20.5 4.0 27 8-34 17-43 (52)
4 2k6i_A Uncharacterized protein 67.1 6.2 0.00021 22.0 3.1 30 3-34 19-48 (56)
5 3v6i_B V-type ATP synthase, su 63.8 6.4 0.00022 24.6 3.0 23 5-27 33-55 (105)
6 3bk6_A PH stomatin; archaea, t 54.7 6.3 0.00021 25.8 1.9 18 4-21 135-152 (188)
7 3v6i_A V-type ATP synthase sub 37.7 26 0.00091 22.8 2.9 22 5-26 19-40 (187)
8 2ql2_B Neurod1, neurogenic dif 33.1 35 0.0012 18.7 2.5 20 41-60 40-59 (60)
9 1l2p_A ATP synthase B chain; a 26.6 62 0.0021 17.1 2.8 21 5-25 4-24 (61)
10 4aya_A DNA-binding protein inh 21.9 69 0.0024 19.5 2.6 21 41-61 63-83 (97)
11 1mdy_A Protein (MYOD BHLH doma 20.6 72 0.0025 17.9 2.3 19 41-59 49-67 (68)
No 1
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}
Probab=97.46 E-value=7e-05 Score=50.55 Aligned_cols=57 Identities=16% Similarity=0.242 Sum_probs=35.9
Q ss_pred chhcchhhHHHHHHHHHHHHHHHHHHHHHHHhh-cCcchhhHHHHHHHHHHHHHHhhccCCe
Q psy928 3 LKKSPREAVATALLSVAEARAKSLDLVAKALET-KDGRSAASLSIAEQYVKAFNELAKTNNT 63 (88)
Q Consensus 3 ~~il~AegeAeai~~~AeA~Aeai~~i~~al~~-~~g~~a~~l~la~qyi~al~~la~~~nt 63 (88)
++..+||.++++.+..|+|++++.+.++++... ..++.+ |..+||+++.++++++|+
T Consensus 123 ~~~~~Aere~~A~i~~Aege~~a~~~~a~a~~~~~~~~~~----l~lr~le~~~~ia~~~~~ 180 (188)
T 3bk6_A 123 ARQAEAERERRARITLAEAERQAAEKLREAAEIISEHPMA----LQLRTLQTISDVAGDKSN 180 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTH----HHHHHTTC----------
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCHHH----HHHHHHHHHHHHhcCCCC
Confidence 445678899999999999999999999988643 122344 455899999999998764
No 2
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=70.29 E-value=4.9 Score=26.52 Aligned_cols=19 Identities=32% Similarity=0.209 Sum_probs=7.2
Q ss_pred cchhhHHHHHHHHHHHHHH
Q psy928 6 SPREAVATALLSVAEARAK 24 (88)
Q Consensus 6 l~AegeAeai~~~AeA~Ae 24 (88)
++.++++++..++++|+.+
T Consensus 7 l~~eA~~~a~~I~~eA~~~ 25 (187)
T 3v6i_A 7 LSQEVEAEIQALLQEAEAK 25 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333433333333333333
No 3
>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}
Probab=68.54 E-value=9.4 Score=20.55 Aligned_cols=27 Identities=33% Similarity=0.325 Sum_probs=18.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy928 8 REAVATALLSVAEARAKSLDLVAKALE 34 (88)
Q Consensus 8 AegeAeai~~~AeA~Aeai~~i~~al~ 34 (88)
.+|+.++..++++|++++-+.+.++-.
T Consensus 17 ~eA~~eA~~Il~eA~~eA~~Ii~eA~~ 43 (52)
T 2kk7_A 17 DDAKAEANKIISEAEAEKAKILEKAKE 43 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777777777766644
No 4
>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii}
Probab=67.09 E-value=6.2 Score=22.03 Aligned_cols=30 Identities=27% Similarity=0.213 Sum_probs=17.8
Q ss_pred chhcchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy928 3 LKKSPREAVATALLSVAEARAKSLDLVAKALE 34 (88)
Q Consensus 3 ~~il~AegeAeai~~~AeA~Aeai~~i~~al~ 34 (88)
+.|..||.+|..++-.|+.++ -+.+.++..
T Consensus 19 ~eIKeAE~~A~~iVeeA~~ea--~~ii~eAre 48 (56)
T 2k6i_A 19 KEVKLAEEQAVKEIEEAKNRA--EQIKAEAIE 48 (56)
T ss_dssp CTTCHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 467777777766655555444 555555543
No 5
>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I
Probab=63.78 E-value=6.4 Score=24.60 Aligned_cols=23 Identities=52% Similarity=0.533 Sum_probs=12.8
Q ss_pred hcchhhHHHHHHHHHHHHHHHHH
Q psy928 5 KSPREAVATALLSVAEARAKSLD 27 (88)
Q Consensus 5 il~AegeAeai~~~AeA~Aeai~ 27 (88)
|-.||++|.+|+..|++.+.+++
T Consensus 33 v~~AEAeA~ril~eAe~~a~~l~ 55 (105)
T 3v6i_B 33 VKRAEAEAKALLEEAEAKAKALE 55 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666655555555543
No 6
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}
Probab=54.70 E-value=6.3 Score=25.81 Aligned_cols=18 Identities=28% Similarity=0.158 Sum_probs=14.8
Q ss_pred hhcchhhHHHHHHHHHHH
Q psy928 4 KKSPREAVATALLSVAEA 21 (88)
Q Consensus 4 ~il~AegeAeai~~~AeA 21 (88)
.|.+|||++++.+..++|
T Consensus 135 ~i~~Aege~~a~~~~a~a 152 (188)
T 3bk6_A 135 RITLAEAERQAAEKLREA 152 (188)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHH
Confidence 467899999988888776
No 7
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=37.67 E-value=26 Score=22.84 Aligned_cols=22 Identities=41% Similarity=0.350 Sum_probs=13.0
Q ss_pred hcchhhHHHHHHHHHHHHHHHH
Q psy928 5 KSPREAVATALLSVAEARAKSL 26 (88)
Q Consensus 5 il~AegeAeai~~~AeA~Aeai 26 (88)
+..|+.+++.|+..|+.+|+.+
T Consensus 19 ~~eA~~~a~~I~~eA~~eA~~~ 40 (187)
T 3v6i_A 19 LQEAEAKAEAVKREAEEKAKAL 40 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666665553
No 8
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=33.06 E-value=35 Score=18.70 Aligned_cols=20 Identities=25% Similarity=0.562 Sum_probs=16.4
Q ss_pred hhHHHHHHHHHHHHHHhhcc
Q psy928 41 AASLSIAEQYVKAFNELAKT 60 (88)
Q Consensus 41 a~~l~la~qyi~al~~la~~ 60 (88)
..-|.+|-.||..|.++-.+
T Consensus 40 i~tLr~Ai~YI~~L~~~L~~ 59 (60)
T 2ql2_B 40 IETLRLAKNYIWALSEILRS 59 (60)
T ss_dssp HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 45688999999999987654
No 9
>1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia coli} SCOP: f.23.21.1
Probab=26.65 E-value=62 Score=17.13 Aligned_cols=21 Identities=19% Similarity=0.202 Sum_probs=10.2
Q ss_pred hcchhhHHHHHHHHHHHHHHH
Q psy928 5 KSPREAVATALLSVAEARAKS 25 (88)
Q Consensus 5 il~AegeAeai~~~AeA~Aea 25 (88)
+..|..++..|+..|+.+++.
T Consensus 4 L~~Ar~ea~~Ii~~A~~~a~~ 24 (61)
T 1l2p_A 4 LKKAKAEAQVIIEQANKRRSQ 24 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555544444433
No 10
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=21.92 E-value=69 Score=19.49 Aligned_cols=21 Identities=10% Similarity=0.115 Sum_probs=17.2
Q ss_pred hhHHHHHHHHHHHHHHhhccC
Q psy928 41 AASLSIAEQYVKAFNELAKTN 61 (88)
Q Consensus 41 a~~l~la~qyi~al~~la~~~ 61 (88)
.--|++|..||..|.++-.++
T Consensus 63 IETLRlAi~YI~~Lq~~L~~~ 83 (97)
T 4aya_A 63 MEILQHVIDYILDLQIALDSH 83 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 345889999999999887765
No 11
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=20.62 E-value=72 Score=17.88 Aligned_cols=19 Identities=21% Similarity=0.375 Sum_probs=15.1
Q ss_pred hhHHHHHHHHHHHHHHhhc
Q psy928 41 AASLSIAEQYVKAFNELAK 59 (88)
Q Consensus 41 a~~l~la~qyi~al~~la~ 59 (88)
..-|.+|.+||..|.++-+
T Consensus 49 i~tLr~Ai~YI~~L~~~L~ 67 (68)
T 1mdy_A 49 VEILRNAIRYIEGLQALLR 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 4458899999999987643
Done!