Query psy928
Match_columns 88
No_of_seqs 116 out of 813
Neff 6.5
Searched_HMMs 13730
Date Fri Aug 16 23:25:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy928.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/928hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1l2pa_ f.23.21.1 (A:) F1F0 AT 39.8 23 0.0017 18.4 4.0 27 9-35 6-32 (61)
2 d1j5pa4 c.2.1.3 (A:-1-108,A:22 29.2 46 0.0034 18.7 4.7 25 48-72 88-113 (132)
3 d1xxaa_ d.74.2.1 (A:) C-termin 28.7 1.9 0.00013 23.5 -2.1 49 36-84 21-71 (71)
4 d1ik6a1 c.36.1.7 (A:1-191) E1- 19.7 35 0.0025 21.2 2.6 24 59-82 143-167 (191)
5 d2bfdb1 c.36.1.7 (B:2-204) Bra 19.0 34 0.0024 21.6 2.4 20 63-82 160-179 (203)
6 d1w85b1 c.36.1.7 (B:1-192) Pyr 18.3 36 0.0026 21.4 2.4 20 63-82 143-162 (192)
7 d1qs0b1 c.36.1.7 (B:2-205) 2-o 17.2 42 0.0031 21.0 2.6 22 61-82 142-164 (204)
8 d2ozlb1 c.36.1.7 (B:0-191) E1- 16.9 44 0.0032 20.7 2.6 22 61-82 141-163 (192)
9 d2nzug1 c.93.1.1 (G:58-332) Gl 13.6 91 0.0066 18.5 3.5 13 49-61 20-32 (275)
10 d1umdb1 c.36.1.7 (B:2-187) Bra 13.6 66 0.0048 19.4 2.8 20 63-82 143-162 (186)
No 1
>d1l2pa_ f.23.21.1 (A:) F1F0 ATP synthase subunit B, membrane domain {Escherichia coli [TaxId: 562]}
Probab=39.78 E-value=23 Score=18.39 Aligned_cols=27 Identities=19% Similarity=0.238 Sum_probs=17.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy928 9 EAVATALLSVAEARAKSLDLVAKALET 35 (88)
Q Consensus 9 egeAeai~~~AeA~Aeai~~i~~al~~ 35 (88)
+++.++..++.+|..++-++|.++-..
T Consensus 6 eAK~eAa~Ii~qA~~ra~qIveeak~~ 32 (61)
T d1l2pa_ 6 KAKAEAQVIIEQANKRRSQILDEAKAE 32 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666777777777766543
No 2
>d1j5pa4 c.2.1.3 (A:-1-108,A:220-241) Hypothetical protein TM1643 {Thermotoga maritima [TaxId: 2336]}
Probab=29.19 E-value=46 Score=18.70 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=19.1
Q ss_pred HHHHHHHHHhhccCCe-EEecCCchh
Q psy928 48 EQYVKAFNELAKTNNT-LIVPSDANN 72 (88)
Q Consensus 48 ~qyi~al~~la~~~nt-ivlP~~~~~ 72 (88)
..+.+.+.++++.+.. +++|+....
T Consensus 88 ~~~~~~l~~~A~~~g~~i~~~sgai~ 113 (132)
T d1j5pa4 88 EVFRERFFSELKNSPARVFFPSGSML 113 (132)
T ss_dssp HHHHHHHHHHHHTCSCEEECCCTCHH
T ss_pred hhHHHHHHHHHHHcCCEEEEeChHhc
Confidence 3567888999998764 899987554
No 3
>d1xxaa_ d.74.2.1 (A:) C-terminal domain of arginine repressor {Escherichia coli [TaxId: 562]}
Probab=28.72 E-value=1.9 Score=23.55 Aligned_cols=49 Identities=4% Similarity=0.022 Sum_probs=27.3
Q ss_pred cCcchhhHHHH-HHHHHH-HHHHhhccCCeEEecCCchhHHHHHHHHHHHh
Q psy928 36 KDGRSAASLSI-AEQYVK-AFNELAKTNNTLIVPSDANNIASMVTQSSIDS 84 (88)
Q Consensus 36 ~~g~~a~~l~l-a~qyi~-al~~la~~~ntivlP~~~~~~~g~~~~~~~~~ 84 (88)
||...++...| ...|.| -++.+|...+.+++|.+..+...+...+.++|
T Consensus 21 pG~A~~va~~iD~~~~~e~I~GTiAGdDTvlvi~~~~~~a~~l~~~i~~Lf 71 (71)
T d1xxaa_ 21 PGAAQLIARLLDSLGKAEGILGTIAGDDTIFTTPANGFTVKDLYEAILELF 71 (71)
T ss_dssp TTTHHHHHHHHTTTTTTTTEEEEEECSSEEEEEECTTCCHHHHHHHHHTTC
T ss_pred CCcHHHHHHHHHcCCCCCcEEEEEccCCEEEEEECCHHHHHHHHHHHHHhC
Confidence 34444443333 223454 35566655555888888777766666555443
No 4
>d1ik6a1 c.36.1.7 (A:1-191) E1-beta subunit of pyruvate dehydrogenase, Pyr module {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=19.65 E-value=35 Score=21.16 Aligned_cols=24 Identities=17% Similarity=0.310 Sum_probs=19.0
Q ss_pred ccCC-eEEecCCchhHHHHHHHHHH
Q psy928 59 KTNN-TLIVPSDANNIASMVTQSSI 82 (88)
Q Consensus 59 ~~~n-tivlP~~~~~~~g~~~~~~~ 82 (88)
.=++ +|+.|+++.|..+++..+..
T Consensus 143 ~iPgl~Vv~Ps~p~da~~ll~~al~ 167 (191)
T d1ik6a1 143 HTPGLVVVMPSTPYNAKGLLKAAIR 167 (191)
T ss_dssp TCTTCEEECCCSHHHHHHHHHHHHH
T ss_pred HhhcccEEecCCHHHHHHHHHHHHh
Confidence 3445 49999999999999987664
No 5
>d2bfdb1 c.36.1.7 (B:2-204) Branched-chain alpha-keto acid dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.03 E-value=34 Score=21.59 Aligned_cols=20 Identities=5% Similarity=0.205 Sum_probs=16.9
Q ss_pred eEEecCCchhHHHHHHHHHH
Q psy928 63 TLIVPSDANNIASMVTQSSI 82 (88)
Q Consensus 63 tivlP~~~~~~~g~~~~~~~ 82 (88)
.|++|+++.|..+++..+..
T Consensus 160 ~Vv~Ps~p~Da~gll~~ai~ 179 (203)
T d2bfdb1 160 KVVIPRSPFQAKGLLLSCIE 179 (203)
T ss_dssp EEECCSSHHHHHHHHHHHHH
T ss_pred EEEecCCHHHHHHHHHHHHh
Confidence 48899999999999987654
No 6
>d1w85b1 c.36.1.7 (B:1-192) Pyruvate dehydrogenase E1-beta, PdhB, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=18.25 E-value=36 Score=21.35 Aligned_cols=20 Identities=10% Similarity=0.323 Sum_probs=16.9
Q ss_pred eEEecCCchhHHHHHHHHHH
Q psy928 63 TLIVPSDANNIASMVTQSSI 82 (88)
Q Consensus 63 tivlP~~~~~~~g~~~~~~~ 82 (88)
.||+|+++.|..|++..+..
T Consensus 143 kVv~Ps~p~Da~gll~~Ai~ 162 (192)
T d1w85b1 143 KVVIPSTPYDAKGLLISAIR 162 (192)
T ss_dssp EEECCSSHHHHHHHHHHHHH
T ss_pred eEEeeCCHHHHHHHHHHHHh
Confidence 38999999999999987664
No 7
>d1qs0b1 c.36.1.7 (B:2-205) 2-oxoisovalerate dehydrogenase (E1B), Pyr module {Pseudomonas putida [TaxId: 303]}
Probab=17.19 E-value=42 Score=21.04 Aligned_cols=22 Identities=14% Similarity=0.238 Sum_probs=17.9
Q ss_pred CC-eEEecCCchhHHHHHHHHHH
Q psy928 61 NN-TLIVPSDANNIASMVTQSSI 82 (88)
Q Consensus 61 ~n-tivlP~~~~~~~g~~~~~~~ 82 (88)
++ +|+.|++..|..+++..+..
T Consensus 142 Pgl~Vv~Ps~~~da~~ll~~a~~ 164 (204)
T d1qs0b1 142 CGLRTVMPSNPYDAKGLLIASIE 164 (204)
T ss_dssp TTCEEECCCSHHHHHHHHHHHHH
T ss_pred CCcEEEeeCCHHHHHHHHHHHHh
Confidence 44 48999999999999987664
No 8
>d2ozlb1 c.36.1.7 (B:0-191) E1-beta subunit of pyruvate dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.90 E-value=44 Score=20.70 Aligned_cols=22 Identities=5% Similarity=0.252 Sum_probs=17.8
Q ss_pred CC-eEEecCCchhHHHHHHHHHH
Q psy928 61 NN-TLIVPSDANNIASMVTQSSI 82 (88)
Q Consensus 61 ~n-tivlP~~~~~~~g~~~~~~~ 82 (88)
++ .|+.|+++.|..+++..+..
T Consensus 141 PGl~Vv~Ps~p~da~gll~~Ai~ 163 (192)
T d2ozlb1 141 PGLKVVSPWNSEDAKGLIKSAIR 163 (192)
T ss_dssp TTCEEECCCSHHHHHHHHHHHHH
T ss_pred CceEEEecCCHHHHHHHHHHHHh
Confidence 44 48999999999999987664
No 9
>d2nzug1 c.93.1.1 (G:58-332) Glucose-resistance amylase regulator CcpA, C-terminal domain {Bacillus megaterium [TaxId: 1404]}
Probab=13.65 E-value=91 Score=18.53 Aligned_cols=13 Identities=8% Similarity=0.332 Sum_probs=6.9
Q ss_pred HHHHHHHHhhccC
Q psy928 49 QYVKAFNELAKTN 61 (88)
Q Consensus 49 qyi~al~~la~~~ 61 (88)
.++..+.+.++..
T Consensus 20 ~~~~gi~~~~~~~ 32 (275)
T d2nzug1 20 ELARGIEDIATMY 32 (275)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc
Confidence 4455555555544
No 10
>d1umdb1 c.36.1.7 (B:2-187) Branched-chain alpha-keto acid dehydrogenase, Pyr module {Thermus thermophilus [TaxId: 274]}
Probab=13.57 E-value=66 Score=19.41 Aligned_cols=20 Identities=5% Similarity=0.122 Sum_probs=16.6
Q ss_pred eEEecCCchhHHHHHHHHHH
Q psy928 63 TLIVPSDANNIASMVTQSSI 82 (88)
Q Consensus 63 tivlP~~~~~~~g~~~~~~~ 82 (88)
+|+.|++..+..+++..+..
T Consensus 143 ~V~~Ps~~~d~~~~l~~a~~ 162 (186)
T d1umdb1 143 KVVAVSTPYDAKGLLKAAIR 162 (186)
T ss_dssp EEEECCSHHHHHHHHHHHHH
T ss_pred eeeecCCHHHHHHHHHHHHh
Confidence 48999999999998887653
Done!