RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy928
(88 letters)
>gnl|CDD|182567 PRK10581, PRK10581, geranyltranstransferase; Provisional.
Length = 299
Score = 28.6 bits (64), Expect = 0.33
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 14 ALLSVAEARAKSLDLVAKALETKDGRSAASLSIA 47
ALL + +AR K+ DL+ A ++ D +A SL +
Sbjct: 252 ALLGLEQARKKARDLIDDARQSLDQLAAQSLDTS 285
>gnl|CDD|223721 COG0648, Nfo, Endonuclease IV [DNA replication, recombination,
and repair].
Length = 280
Score = 27.2 bits (61), Expect = 0.87
Identities = 12/46 (26%), Positives = 20/46 (43%)
Query: 21 ARAKSLDLVAKALETKDGRSAASLSIAEQYVKAFNELAKTNNTLIV 66
RA+ + L A + + R S +AE ++ F K + L V
Sbjct: 21 ERAREIGLNAFEIFLVNPRVWISPPLAEDAIELFKAALKDDVQLSV 66
>gnl|CDD|143598 cd07574, nitrilase_Rim1_like, Uncharacterized subgroup of the
nitrilase superfamily; some members of this subgroup
have an N-terminal RimI domain (class 12 nitrilases).
Some members of this subgroup are implicated in
post-translational modification, as they contain an
N-terminal GCN5-related N-acetyltransferase (GNAT)
protein RimI family domain. The nitrilase superfamily
is comprised of nitrile- or amide-hydrolyzing enzymes
and amide-condensing enzymes, which depend on a
Glu-Lys-Cys catalytic triad. This superfamily has been
classified in the literature based on global and
structure based sequence analysis into thirteen
different enzyme classes (referred to as 1-13), this
subgroup corresponds to class 12. Members of this
superfamily generally form homomeric complexes, the
basic building block of which is a homodimer.
Length = 280
Score = 26.0 bits (58), Expect = 2.6
Identities = 15/59 (25%), Positives = 21/59 (35%), Gaps = 10/59 (16%)
Query: 9 EAVATALLSVAEARAKSLDLVAKALETKDGRSAASLSIAEQYVKAFNELAKTNNTLIVP 67
E LLS+ LD +AL + YV F+ELA+ I+
Sbjct: 42 EYFTMELLSLLPEAIDGLDEAIRALAA----------LTPDYVALFSELARKYGINIIA 90
>gnl|CDD|179883 PRK04833, PRK04833, argininosuccinate lyase; Provisional.
Length = 455
Score = 25.7 bits (57), Expect = 3.0
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 10/59 (16%)
Query: 30 AKALETKDGRSAASLSIAEQ--YVKAFNEL---AKTNNTLIVPSDANNIASMVTQSSID 83
+KAL T L+ EQ +A NEL + N I+ SDA +I S V ID
Sbjct: 41 SKALVT-----VGVLTADEQQQLEEALNELLEEVRANPQQILASDAEDIHSWVEGKLID 94
>gnl|CDD|227441 COG5110, RPN1, 26S proteasome regulatory complex component
[Posttranslational modification, protein turnover,
chaperones].
Length = 881
Score = 25.3 bits (55), Expect = 5.0
Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 5/39 (12%)
Query: 36 KDGRSAASLSIAEQ-----YVKAFNELAKTNNTLIVPSD 69
KD R A + A Q +V L N++LI D
Sbjct: 347 KDTRQLAGIGSANQNLAMGFVNDPINLGYENDSLIPLDD 385
>gnl|CDD|200222 TIGR02965, xanthine_xdhB, xanthine dehydrogenase, molybdopterin
binding subunit. Members of the protein family are the
molybdopterin-containing large subunit (or, in,
eukaryotes, the molybdopterin-binding domain) of
xanthine dehydrogenase, and enzyme that reduces the
purine pool by catabolizing xanthine to urate. This
model is based primarily on bacterial sequences; it does
not manage to include all eukaryotic xanthine
dehydrogenases and thereby discriminate them from the
closely related enzyme aldehyde dehydrogenase [Purines,
pyrimidines, nucleosides, and nucleotides, Other].
Length = 758
Score = 25.0 bits (55), Expect = 5.5
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 14 ALLSVAEARAKSLDLVAKALETKDGRSAASLSIA 47
A+L + EA A LV L + G +AA+L+ A
Sbjct: 123 AVLDIEEALAAGSRLVTPPLTLERGDAAAALAAA 156
>gnl|CDD|193512 cd03892, M20_peptT, M20 Peptidase T specifically cleaves
tripeptides. Peptidase M20 family, Peptidase T (peptT;
tripeptide aminopeptidase; tripeptidase) subfamily. PepT
acts only on tripeptide substrates, and is thus called a
tripeptidase. It catalyzes the release of N-terminal
amino acids with hydrophobic side chains from
tripeptides with high specificity; dipeptides,
tetrapeptides or tripeptides with the N-terminus blocked
are not cleaved. Tripeptidases are known to function at
the final stage of proteolysis in lactococcal bacteria
and release amino acids from tripeptides produced during
the digestion of milk proteins such as casein.
Length = 401
Score = 25.1 bits (56), Expect = 5.6
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 20 EARAKSLDLVAKALETKDGRSAASLSIAEQY 50
EAR + L + L K G L I +QY
Sbjct: 287 EARKELLKEIVDKLNAKYGEGRVELEIKDQY 317
>gnl|CDD|222737 pfam14400, Transglut_i_TM, Inactive transglutaminase fused to 7
transmembrane helices. A family of inactive
transglutaminases fused to seven transmembrane helices.
The transglutaminase domain is predicted to be
extracellularly located. Members of this family are
associated in gene neighborhoods with a pepsin-like
peptidase and an ATP-grasp of the RimK-family. The
ATP-grasp is predicted to modify the 7TM protein or a
cofactor that interacts with it.
Length = 164
Score = 24.9 bits (55), Expect = 6.2
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 30 AKALETKD-GRSAASLSIAEQYVKAFNELAKTNNTLIVPSDANN 72
A+AL + RSA +L+ A + +K N+ N L++ S
Sbjct: 121 AEALLEEARSRSADNLTFARELIKRLNDPDDQNAALLLGSATRT 164
>gnl|CDD|233563 TIGR01766, tspaseT_teng_C, transposase, IS605 OrfB family,
central region. This model represents a region of a
sequence similarity between a family of putative
transposases of Thermoanaerobacter tengcongensis,
smaller related proteins from Bacillus anthracis,
putative transposes described by Pfam model pfam01385,
and other proteins [Mobile and extrachromosomal element
functions, Transposon functions].
Length = 82
Score = 24.2 bits (53), Expect = 7.0
Identities = 14/32 (43%), Positives = 15/32 (46%)
Query: 46 IAEQYVKAFNELAKTNNTLIVPSDANNIASMV 77
+ VK E AK NN IV D NI MV
Sbjct: 8 FLHKIVKQIVEYAKENNGTIVLEDLKNIREMV 39
>gnl|CDD|234457 TIGR04075, bacter_Pnkp, polynucleotide kinase-phosphatase. Members
of this protein family are the bacterial polynucleotide
kinase-phosphatase (Pnkp) whose genes occur paired with
genes for the 3' terminal RNA ribose
2'-O-methyltransferase Hen1. All members of the seed
alignment belong to a cassette with the Hen1. The pair
acts in bacterial RNA repair. This enzyme performs
end-healing reactions on broken RNA, preparing from the
RNA ligase to close the break. The working hypothesis is
that the combination of Pnkp (RNA repair) and Hen1 (RNA
modification) serves to first repair RNA damage from
ribotoxins and then perform a modification that prevents
the damage from recurring [Transcription, RNA
processing].
Length = 851
Score = 24.6 bits (54), Expect = 9.4
Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 15/63 (23%)
Query: 7 PREAVATALL-----SVAEARAKSLDLVAKALETKDGRS----------AASLSIAEQYV 51
P A A L+ SV A +LD ALE R AA + AE YV
Sbjct: 605 PWSAKAQGLIRSQYASVGAAARAALDAAVAALEQAAARGLDVADLLERTAARAAAAEAYV 664
Query: 52 KAF 54
+A+
Sbjct: 665 EAY 667
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.308 0.118 0.289
Gapped
Lambda K H
0.267 0.0776 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,923,300
Number of extensions: 299742
Number of successful extensions: 331
Number of sequences better than 10.0: 1
Number of HSP's gapped: 331
Number of HSP's successfully gapped: 27
Length of query: 88
Length of database: 10,937,602
Length adjustment: 56
Effective length of query: 32
Effective length of database: 8,453,778
Effective search space: 270520896
Effective search space used: 270520896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 53 (24.1 bits)