RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy928
(88 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.9 bits (87), Expect = 1e-04
Identities = 20/103 (19%), Positives = 31/103 (30%), Gaps = 24/103 (23%)
Query: 1 MMLKKSPREAVAT---------ALLSVAEARAKSLDLV-AKALETKDGRSAASLSIAEQY 50
+ PRE + T + A + V L T S L AE
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372
Query: 51 VKAFNELAKTNNTLIVPSDANNIASMVTQ------SSIDSMEF 87
K F+ L+ + P A +I +++ D M
Sbjct: 373 -KMFDRLS------VFPPSA-HIPTILLSLIWFDVIKSDVMVV 407
Score = 32.5 bits (73), Expect = 0.008
Identities = 15/73 (20%), Positives = 31/73 (42%), Gaps = 15/73 (20%)
Query: 23 AKSLDLVAKALETKDG---RSAASLS------IAEQYVKAFNELAKTNNTLIVPSDANNI 73
+ L+ K L+ + R + + IAE ++ + LA +N V D
Sbjct: 301 DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES-IR--DGLATWDNWKHVNCDK--- 354
Query: 74 ASMVTQSSIDSME 86
+ + +SS++ +E
Sbjct: 355 LTTIIESSLNVLE 367
Score = 27.9 bits (61), Expect = 0.44
Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 11/47 (23%)
Query: 15 LLSVAEA--RAKSLDLVAKALETKDGRSAASLSIAEQYVKAFNELAK 59
L + E +K DL+ AL +D +I E+ A ++ +
Sbjct: 552 LPKIEENLICSKYTDLLRIALMAEDE------AIFEE---AHKQVQR 589
>1n71_A AAC(6')-II; aminoglycoside 6'-N-acetyltransferase, antibiotic
resistance, coenzyme A; HET: COA; 1.80A {Enterococcus
faecium} SCOP: d.108.1.1 PDB: 2a4n_A* 1b87_A*
Length = 180
Score = 30.1 bits (67), Expect = 0.053
Identities = 14/59 (23%), Positives = 24/59 (40%)
Query: 11 VATALLSVAEARAKSLDLVAKALETKDGRSAASLSIAEQYVKAFNELAKTNNTLIVPSD 69
+ T L++ E S + L T D +LS + Y F+++A N P +
Sbjct: 87 IGTRLVNYLEKEVASRGGITIYLGTDDLDHGTTLSQTDLYEHTFDKVASIQNLREHPYE 145
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.6 bits (66), Expect = 0.089
Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 32/92 (34%)
Query: 13 TALLSVAEA------------RAKSLDLVAKALE-TKDGRS----AA------SLSIAEQ 49
AL S+A+ R + A+ + GRS A + S +++
Sbjct: 1768 AALASLADVMSIESLVEVVFYRGM---TMQVAVPRDELGRSNYGMIAINPGRVAASFSQE 1824
Query: 50 YVKAFNE-LAKTNNTLIVPSDAN-NIASMVTQ 79
++ E + K L+ N N+ + Q
Sbjct: 1825 ALQYVVERVGKRTGWLVEI--VNYNVENQ--Q 1852
Score = 29.6 bits (66), Expect = 0.095
Identities = 14/82 (17%), Positives = 25/82 (30%), Gaps = 7/82 (8%)
Query: 6 SPREAVAT--ALLSVAEARAKSLDLVAKALETKDGRSAASLSIAEQYVKAFNE--LAKTN 61
P E A + AE K L V+ +E + + + F L +
Sbjct: 43 EPTEGFAADDEPTTPAELVGKFLGYVSSLVE--PSKVGQFDQVLNLCLTEFENCYLEGND 100
Query: 62 -NTLIVPSDANNIASMVTQSSI 82
+ L N ++V +
Sbjct: 101 IHALAAKLLQENDTTLVKTKEL 122
Score = 26.2 bits (57), Expect = 1.5
Identities = 15/69 (21%), Positives = 24/69 (34%), Gaps = 5/69 (7%)
Query: 4 KKSPREAVATALLSVAEARA-KSLD---LVAKALETKDGRSAASLSIAEQYVKAFNELAK 59
K + V L+ E + D L AK L+ D + + + Y+ A +AK
Sbjct: 76 KVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITA-RIMAK 134
Query: 60 TNNTLIVPS 68
S
Sbjct: 135 RPFDKKSNS 143
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces
cerevisiae}
Length = 1030
Score = 25.2 bits (55), Expect = 3.5
Identities = 9/52 (17%), Positives = 19/52 (36%)
Query: 2 MLKKSPREAVATALLSVAEARAKSLDLVAKALETKDGRSAASLSIAEQYVKA 53
K SP + + AE +++ + D S+ + + E + A
Sbjct: 275 KFKASPLYQAVSDIGISAEDVGENISSQHQIHPPVDHPSSKPVEVIESILNA 326
>3ife_A Peptidase T; metallopeptidase, aminopeptidase, hydro metal-binding,
metalloprotease, protease; HET: SUC; 1.55A {Bacillus
anthracis}
Length = 434
Score = 24.8 bits (54), Expect = 3.8
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 20 EARAKSLDLVAKALETKDGRSAASLSIAEQY 50
EAR +++ + K ++ K G+ A L + +QY
Sbjct: 315 EARKNTIENIVKQMQEKYGQDAVVLEMNDQY 345
>1ghe_A Acetyltransferase; acyl coenzyme A complex; HET: ACO; 1.55A
{Pseudomonas syringae PV} SCOP: d.108.1.1 PDB: 1j4j_A*
Length = 177
Score = 24.8 bits (54), Expect = 4.3
Identities = 7/37 (18%), Positives = 12/37 (32%)
Query: 8 REAVATALLSVAEARAKSLDLVAKALETKDGRSAASL 44
+ L+ E A L+T+ G A +
Sbjct: 104 GRGLGRQLMDEVEQVAVKHKRGLLHLDTEAGSVAEAF 140
>4evy_A Aminoglycoside N(6')-acetyltransferase type 1; center for
structural genomics of infectious diseases (csgid
national institute of allergy and infectious diseases;
HET: TOY; 1.77A {Acinetobacter haemolyticus} PDB: 4f0y_A
4e8o_A
Length = 166
Score = 24.8 bits (54), Expect = 4.3
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 11 VATALLSVAEARAKSLDLVAKALETKDGRSAA 42
VAT L+ AE AK A + +
Sbjct: 112 VATMLIRQAEVWAKQFSCTEFASDAALDNVIS 143
>2wpx_A ORF14; transferase, acetyl transferase, antibiotic biosynthesis;
HET: ACO; 2.31A {Streptomyces clavuligerus} PDB: 2wpw_A*
Length = 339
Score = 24.7 bits (53), Expect = 4.9
Identities = 6/35 (17%), Positives = 11/35 (31%)
Query: 8 REAVATALLSVAEARAKSLDLVAKALETKDGRSAA 42
R + AL + A A+ D + +
Sbjct: 98 RRGIGRALWAHARELARKHDRTTLTATVVESLPSG 132
>1vkc_A Putative acetyl transferase; structural genomics, pyrococcus
furiosus southeast collaboratory for structural
genomics, secsg; 1.89A {Pyrococcus furiosus} SCOP:
d.108.1.1
Length = 158
Score = 24.3 bits (53), Expect = 5.4
Identities = 9/34 (26%), Positives = 12/34 (35%)
Query: 11 VATALLSVAEARAKSLDLVAKALETKDGRSAASL 44
+ +ALL AE AK L + A
Sbjct: 108 IGSALLRKAEEWAKERGAKKIVLRVEIDNPAVKW 141
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator
protein R and maltose...; novel fold for DNA binding;
HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28
c.94.1.1
Length = 487
Score = 24.4 bits (53), Expect = 6.4
Identities = 12/72 (16%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Query: 4 KKSPREAVATALLSVAEARAKSLDLVAKALETKDGRSAASLSIAEQYVKAFNELAKTNNT 63
+++ EA+A A + A ++ + + +++ + E+ N+
Sbjct: 354 RQTVDEALAAAQTNAAAEFMSKINDINDLVNATFQVKKFFRDTKKKFNLNYEEIYILNHI 413
Query: 64 LIVPSDANNIAS 75
L S++N I+S
Sbjct: 414 L--RSESNEISS 423
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces
cerevisiae}
Length = 1219
Score = 24.1 bits (52), Expect = 8.0
Identities = 9/53 (16%), Positives = 19/53 (35%)
Query: 1 MMLKKSPREAVATALLSVAEARAKSLDLVAKALETKDGRSAASLSIAEQYVKA 53
K SP + + AE +++ + D S+ + + E + A
Sbjct: 271 EKFKASPLYQAVSDIGISAEDVGENISSQHQIHPPVDHPSSKPVEVIESILNA 323
>1g8l_A Molybdopterin biosynthesis MOEA protein; molybdenum cofactor
biosynthesis, metal binding protein; 1.95A {Escherichia
coli} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1fc5_A
1g8r_A 2nqu_A 2nro_A 2nqq_A 2nqk_A 2nqr_A 2nqm_A 2nqs_A
2nrp_A 2nqv_A 2nrs_A 2nqn_A
Length = 411
Score = 24.1 bits (53), Expect = 8.7
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 13 TALLSVAEARAKSLDLVAKALET 35
T L+S+ A + L V
Sbjct: 5 TGLMSLDTALNEMLSRVTPLTAQ 27
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.308 0.118 0.289
Gapped
Lambda K H
0.267 0.0770 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,127,987
Number of extensions: 55011
Number of successful extensions: 144
Number of sequences better than 10.0: 1
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 45
Length of query: 88
Length of database: 6,701,793
Length adjustment: 56
Effective length of query: 32
Effective length of database: 5,138,217
Effective search space: 164422944
Effective search space used: 164422944
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 51 (23.3 bits)