RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy928
         (88 letters)



>d1n71a_ d.108.1.1 (A:) Aminoglycoside 6'-N-acetyltransferase
           {Enterococcus faecium [TaxId: 1352]}
          Length = 180

 Score = 24.1 bits (51), Expect = 2.6
 Identities = 12/48 (25%), Positives = 21/48 (43%)

Query: 11  VATALLSVAEARAKSLDLVAKALETKDGRSAASLSIAEQYVKAFNELA 58
           + T L++  E    S   +   L T D     +LS  + Y   F+++A
Sbjct: 87  IGTRLVNYLEKEVASRGGITIYLGTDDLDHGTTLSQTDLYEHTFDKVA 134


>d2ieaa2 c.36.1.10 (A:56-470) Pyruvate dehydrogenase E1 component,
          PP module {Escherichia coli [TaxId: 562]}
          Length = 415

 Score = 24.4 bits (52), Expect = 2.7
 Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 3/44 (6%)

Query: 22 RAKSLDLVAKALETKD---GRSAASLSIAEQYVKAFNELAKTNN 62
          R  ++  V +A +      G  A+  S A  Y   FN   +  N
Sbjct: 31 RWNAIMTVLRASKKDLELGGHMASFQSSATIYDVCFNHFFRARN 74


>d3d19a1 a.29.13.1 (A:11-144) Uncharacterized protein
          BCE_G9241_1042 {Bacillus cereus [TaxId: 1396]}
          Length = 134

 Score = 22.9 bits (49), Expect = 7.3
 Identities = 5/40 (12%), Positives = 13/40 (32%), Gaps = 1/40 (2%)

Query: 47 AEQYVKAFNELAKTNNTLIVPSDANNIASMVTQSSIDSME 86
          A Q+ + F  + +  ++    +D   I          +  
Sbjct: 46 ANQFYRLFEHIEQIAHSYTNETDPEQI-KRFNAEVQQAAT 84


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.308    0.118    0.289 

Gapped
Lambda     K      H
   0.267   0.0632    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 240,814
Number of extensions: 7831
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 5
Length of query: 88
Length of database: 2,407,596
Length adjustment: 53
Effective length of query: 35
Effective length of database: 1,679,906
Effective search space: 58796710
Effective search space used: 58796710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 47 (22.1 bits)