Query psy9280
Match_columns 143
No_of_seqs 193 out of 1442
Neff 8.1
Searched_HMMs 46136
Date Fri Aug 16 23:26:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9280.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9280hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK05862 enoyl-CoA hydratase; 99.9 4E-25 8.7E-30 169.5 12.8 104 37-143 2-105 (257)
2 PRK09674 enoyl-CoA hydratase-i 99.9 8.5E-25 1.8E-29 167.6 12.4 102 39-143 2-103 (255)
3 PRK06190 enoyl-CoA hydratase; 99.9 1E-24 2.2E-29 167.5 12.6 105 36-143 1-105 (258)
4 PRK05995 enoyl-CoA hydratase; 99.9 1.4E-24 3E-29 166.9 12.7 105 36-143 1-110 (262)
5 PRK08138 enoyl-CoA hydratase; 99.9 2.1E-24 4.6E-29 165.9 13.0 106 36-143 4-109 (261)
6 PRK05981 enoyl-CoA hydratase; 99.9 2.4E-24 5.2E-29 165.9 13.0 105 36-143 1-114 (266)
7 PRK06142 enoyl-CoA hydratase; 99.9 2.8E-24 6E-29 166.1 13.3 104 37-143 4-120 (272)
8 PRK05674 gamma-carboxygeranoyl 99.9 2.1E-24 4.6E-29 166.3 12.4 106 36-143 2-112 (265)
9 PRK09120 p-hydroxycinnamoyl Co 99.9 2.2E-24 4.9E-29 167.0 12.5 104 37-143 6-115 (275)
10 PRK05809 3-hydroxybutyryl-CoA 99.9 2.7E-24 5.8E-29 165.1 12.8 105 36-143 1-108 (260)
11 TIGR03210 badI 2-ketocyclohexa 99.9 2.2E-24 4.8E-29 165.4 12.0 103 38-143 1-105 (256)
12 PRK05870 enoyl-CoA hydratase; 99.9 3E-24 6.6E-29 164.0 12.1 102 39-143 3-106 (249)
13 PRK08140 enoyl-CoA hydratase; 99.9 4.4E-24 9.5E-29 164.1 12.7 104 36-143 1-110 (262)
14 COG1024 CaiD Enoyl-CoA hydrata 99.9 4.3E-24 9.3E-29 163.8 12.5 104 37-143 3-109 (257)
15 PRK07468 enoyl-CoA hydratase; 99.9 5.6E-24 1.2E-28 163.6 12.9 105 37-143 2-111 (262)
16 PRK06495 enoyl-CoA hydratase; 99.9 5.8E-24 1.2E-28 163.1 13.0 104 36-143 1-108 (257)
17 PLN02664 enoyl-CoA hydratase/d 99.9 7.5E-24 1.6E-28 164.0 13.6 106 38-143 4-122 (275)
18 PRK06072 enoyl-CoA hydratase; 99.9 6.1E-24 1.3E-28 162.3 12.8 99 41-143 2-100 (248)
19 PRK06023 enoyl-CoA hydratase; 99.9 4.6E-24 1E-28 163.2 12.1 105 39-143 3-108 (251)
20 PRK07327 enoyl-CoA hydratase; 99.9 6.2E-24 1.4E-28 163.9 12.9 106 36-143 8-117 (268)
21 PRK08272 enoyl-CoA hydratase; 99.9 4E-24 8.7E-29 167.5 12.0 105 36-143 7-138 (302)
22 PRK05864 enoyl-CoA hydratase; 99.9 6.6E-24 1.4E-28 164.4 12.6 105 36-143 6-120 (276)
23 PRK12478 enoyl-CoA hydratase; 99.9 5.4E-24 1.2E-28 166.5 12.1 105 36-143 2-123 (298)
24 PRK08290 enoyl-CoA hydratase; 99.9 6.6E-24 1.4E-28 165.3 12.5 105 36-143 1-129 (288)
25 PRK08260 enoyl-CoA hydratase; 99.9 8.1E-24 1.8E-28 165.3 13.0 104 37-143 2-124 (296)
26 PRK06143 enoyl-CoA hydratase; 99.9 5.8E-24 1.2E-28 163.1 11.9 103 39-143 6-111 (256)
27 PRK06144 enoyl-CoA hydratase; 99.9 8.6E-24 1.9E-28 162.6 12.8 104 37-143 6-113 (262)
28 PRK07260 enoyl-CoA hydratase; 99.9 6.4E-24 1.4E-28 162.7 11.9 103 38-143 1-109 (255)
29 PRK08139 enoyl-CoA hydratase; 99.9 7.3E-24 1.6E-28 163.4 12.2 105 36-143 8-115 (266)
30 PRK05980 enoyl-CoA hydratase; 99.9 9.1E-24 2E-28 162.2 12.5 101 40-143 4-111 (260)
31 PRK08150 enoyl-CoA hydratase; 99.9 9.3E-24 2E-28 161.9 12.0 100 39-143 2-103 (255)
32 PRK07110 polyketide biosynthes 99.9 1.3E-23 2.8E-28 160.6 12.6 104 36-143 2-105 (249)
33 PRK06494 enoyl-CoA hydratase; 99.9 1.1E-23 2.4E-28 161.7 12.1 104 36-143 1-105 (259)
34 PRK07509 enoyl-CoA hydratase; 99.9 1.3E-23 2.8E-28 161.4 12.4 103 38-143 2-113 (262)
35 PRK05869 enoyl-CoA hydratase; 99.9 8.8E-24 1.9E-28 159.1 11.2 105 38-143 2-110 (222)
36 PRK07659 enoyl-CoA hydratase; 99.9 1.6E-23 3.6E-28 160.9 12.6 104 36-143 3-109 (260)
37 KOG1681|consensus 99.9 1.6E-24 3.6E-29 160.9 6.7 115 29-143 9-137 (292)
38 TIGR01929 menB naphthoate synt 99.9 1.4E-23 3E-28 161.2 12.1 103 38-143 1-108 (259)
39 PRK07827 enoyl-CoA hydratase; 99.9 2.4E-23 5.2E-28 159.9 13.3 104 37-143 4-112 (260)
40 PRK07799 enoyl-CoA hydratase; 99.9 1.4E-23 3.1E-28 161.4 12.0 104 37-143 3-111 (263)
41 PRK08258 enoyl-CoA hydratase; 99.9 2.2E-23 4.8E-28 161.5 13.0 101 40-143 18-124 (277)
42 PRK09245 enoyl-CoA hydratase; 99.9 1.9E-23 4.2E-28 160.9 12.6 101 40-143 4-114 (266)
43 PRK06127 enoyl-CoA hydratase; 99.9 2.5E-23 5.4E-28 160.6 13.0 104 37-143 9-117 (269)
44 PRK06688 enoyl-CoA hydratase; 99.9 1.8E-23 4E-28 160.3 12.2 102 39-143 5-107 (259)
45 TIGR02280 PaaB1 phenylacetate 99.9 1.9E-23 4.2E-28 160.1 12.2 99 41-143 1-104 (256)
46 PRK09076 enoyl-CoA hydratase; 99.9 2.1E-23 4.5E-28 160.2 12.4 101 39-143 3-106 (258)
47 PRK07657 enoyl-CoA hydratase; 99.9 2E-23 4.3E-28 160.4 12.2 102 39-143 3-108 (260)
48 PRK11423 methylmalonyl-CoA dec 99.9 2.3E-23 5E-28 160.2 12.5 104 36-143 1-107 (261)
49 PRK06210 enoyl-CoA hydratase; 99.9 2E-23 4.4E-28 161.2 12.2 106 36-143 2-119 (272)
50 PRK08259 enoyl-CoA hydratase; 99.9 1.5E-23 3.3E-28 160.6 11.4 102 39-143 3-104 (254)
51 PRK07511 enoyl-CoA hydratase; 99.9 2.5E-23 5.4E-28 159.7 12.6 101 40-143 4-109 (260)
52 PRK07658 enoyl-CoA hydratase; 99.9 2.4E-23 5.1E-28 159.6 12.3 101 39-143 2-105 (257)
53 PRK06563 enoyl-CoA hydratase; 99.9 1.9E-23 4.1E-28 160.1 11.6 100 41-143 1-103 (255)
54 PRK07396 dihydroxynaphthoic ac 99.9 2.6E-23 5.7E-28 160.8 12.0 105 36-143 10-118 (273)
55 PLN02600 enoyl-CoA hydratase 99.9 2.2E-23 4.7E-28 159.5 11.4 95 49-143 2-99 (251)
56 PLN02888 enoyl-CoA hydratase 99.9 3.9E-23 8.4E-28 159.3 12.6 104 36-143 6-110 (265)
57 PRK08252 enoyl-CoA hydratase; 99.9 3E-23 6.6E-28 158.9 11.9 100 39-143 3-102 (254)
58 PRK07112 polyketide biosynthes 99.9 3.3E-23 7.1E-28 158.8 12.1 103 36-143 1-107 (255)
59 PLN02851 3-hydroxyisobutyryl-C 99.9 5.2E-23 1.1E-27 166.4 13.6 121 20-143 23-149 (407)
60 TIGR03189 dienoyl_CoA_hyt cycl 99.9 7E-23 1.5E-27 156.8 12.4 98 41-143 3-100 (251)
61 PLN02874 3-hydroxyisobutyryl-C 99.9 8.6E-23 1.9E-27 164.4 13.2 105 36-143 8-116 (379)
62 KOG1680|consensus 99.9 1.7E-23 3.6E-28 159.2 8.1 109 35-143 30-138 (290)
63 PRK07854 enoyl-CoA hydratase; 99.9 9.4E-23 2E-27 155.4 12.2 96 41-143 2-97 (243)
64 PLN02157 3-hydroxyisobutyryl-C 99.9 1.2E-22 2.6E-27 164.2 13.4 103 38-143 36-144 (401)
65 PLN02921 naphthoate synthase 99.9 1.1E-22 2.3E-27 161.0 12.8 108 35-143 61-172 (327)
66 PRK07938 enoyl-CoA hydratase; 99.9 9.4E-23 2E-27 155.9 11.6 93 50-143 10-105 (249)
67 PRK05617 3-hydroxyisobutyryl-C 99.9 1.3E-22 2.8E-27 161.5 12.0 102 39-143 3-111 (342)
68 PRK03580 carnitinyl-CoA dehydr 99.9 1.4E-22 3.1E-27 155.7 11.7 100 40-143 4-105 (261)
69 PF00378 ECH: Enoyl-CoA hydrat 99.9 1.5E-22 3.3E-27 153.9 9.8 98 43-143 2-101 (245)
70 PLN02988 3-hydroxyisobutyryl-C 99.9 5.7E-22 1.2E-26 159.5 13.1 102 39-143 9-116 (381)
71 PRK08788 enoyl-CoA hydratase; 99.9 8.1E-22 1.8E-26 153.5 13.5 113 29-143 5-132 (287)
72 PRK08321 naphthoate synthase; 99.9 5.7E-22 1.2E-26 155.4 12.1 104 37-143 21-146 (302)
73 PLN03214 probable enoyl-CoA hy 99.9 1.4E-21 3E-26 151.6 13.3 101 39-143 11-118 (278)
74 PLN02267 enoyl-CoA hydratase/i 99.9 1E-21 2.2E-26 149.4 12.2 99 41-143 2-105 (239)
75 PRK06213 enoyl-CoA hydratase; 99.9 1.9E-21 4.1E-26 146.9 12.0 99 39-143 3-102 (229)
76 cd06558 crotonase-like Crotona 99.9 3.9E-21 8.5E-26 141.0 11.4 99 42-143 2-104 (195)
77 PRK11730 fadB multifunctional 99.9 6.8E-21 1.5E-25 163.8 13.2 101 40-143 7-113 (715)
78 TIGR03200 dearomat_oah 6-oxocy 99.9 6E-21 1.3E-25 151.5 11.3 92 52-143 38-135 (360)
79 TIGR02437 FadB fatty oxidation 99.8 3.8E-20 8.2E-25 159.1 13.1 102 40-143 7-113 (714)
80 TIGR03222 benzo_boxC benzoyl-C 99.8 4.5E-20 9.7E-25 154.0 12.8 107 34-143 6-130 (546)
81 TIGR02441 fa_ox_alpha_mit fatt 99.8 4.8E-20 1E-24 158.9 13.1 106 35-143 9-119 (737)
82 PRK08184 benzoyl-CoA-dihydrodi 99.8 9.3E-20 2E-24 152.4 13.6 115 28-143 248-381 (550)
83 KOG1679|consensus 99.8 6.5E-20 1.4E-24 135.6 10.2 106 38-143 26-135 (291)
84 TIGR03222 benzo_boxC benzoyl-C 99.8 9.5E-20 2E-24 152.1 12.5 113 30-143 246-377 (546)
85 TIGR02440 FadJ fatty oxidation 99.8 1.6E-19 3.6E-24 154.9 12.6 94 50-143 9-107 (699)
86 PRK11154 fadJ multifunctional 99.8 2E-19 4.4E-24 154.6 12.7 102 40-143 6-112 (708)
87 PRK08184 benzoyl-CoA-dihydrodi 99.8 3.2E-19 6.8E-24 149.3 12.5 106 35-143 11-134 (550)
88 KOG0016|consensus 99.8 2E-18 4.4E-23 130.3 10.5 107 34-143 2-118 (266)
89 COG0447 MenB Dihydroxynaphthoi 99.7 4E-18 8.6E-23 126.2 7.5 108 34-143 13-127 (282)
90 KOG1682|consensus 99.7 5.1E-17 1.1E-21 119.5 9.5 111 29-143 23-136 (287)
91 KOG1684|consensus 99.7 6.4E-16 1.4E-20 121.5 10.1 104 36-142 35-145 (401)
92 cd07019 S49_SppA_1 Signal pept 98.8 1.6E-08 3.6E-13 75.6 8.0 78 52-143 2-81 (211)
93 cd07014 S49_SppA Signal peptid 98.7 8.4E-08 1.8E-12 69.8 7.2 61 69-143 22-82 (177)
94 cd07023 S49_Sppa_N_C Signal pe 98.4 7.4E-07 1.6E-11 66.3 7.1 76 52-143 2-77 (208)
95 cd07022 S49_Sppa_36K_type Sign 98.4 1.7E-06 3.8E-11 64.7 8.6 70 59-143 14-84 (214)
96 cd00394 Clp_protease_like Case 97.9 3E-05 6.4E-10 55.2 5.6 61 66-143 8-68 (161)
97 cd07018 S49_SppA_67K_type Sign 97.9 3.5E-05 7.6E-10 58.0 6.1 64 65-142 25-88 (222)
98 TIGR00706 SppA_dom signal pept 97.9 5.1E-05 1.1E-09 56.5 6.6 69 52-143 2-72 (207)
99 KOG1683|consensus 97.4 8.9E-05 1.9E-09 59.4 1.8 92 50-143 65-159 (380)
100 TIGR00705 SppA_67K signal pept 97.2 0.0016 3.5E-08 55.7 7.6 78 49-143 307-389 (584)
101 cd07020 Clp_protease_NfeD_1 No 97.0 0.003 6.6E-08 46.3 6.4 67 53-143 2-72 (187)
102 cd07021 Clp_protease_NfeD_like 95.7 0.047 1E-06 39.8 6.5 58 66-143 10-69 (178)
103 cd07016 S14_ClpP_1 Caseinolyti 94.7 0.054 1.2E-06 38.4 4.1 55 69-143 15-69 (160)
104 PRK10949 protease 4; Provision 93.3 1.1 2.4E-05 38.9 10.1 77 50-143 326-407 (618)
105 PF02601 Exonuc_VII_L: Exonucl 93.2 0.25 5.4E-06 39.0 5.7 59 66-139 52-114 (319)
106 TIGR00237 xseA exodeoxyribonuc 92.6 0.33 7.1E-06 40.2 5.7 61 65-139 166-226 (432)
107 COG1570 XseA Exonuclease VII, 91.3 0.56 1.2E-05 38.9 5.6 57 68-139 175-232 (440)
108 PRK00286 xseA exodeoxyribonucl 90.3 0.7 1.5E-05 38.1 5.5 58 66-139 173-231 (438)
109 TIGR00705 SppA_67K signal pept 86.5 2.6 5.7E-05 36.3 6.6 61 69-142 76-136 (584)
110 cd07013 S14_ClpP Caseinolytic 84.8 4.3 9.2E-05 28.9 6.1 59 66-143 9-69 (162)
111 PRK10949 protease 4; Provision 82.9 4.4 9.5E-05 35.3 6.4 59 69-140 95-153 (618)
112 COG0074 SucD Succinyl-CoA synt 82.3 5.2 0.00011 31.5 6.0 50 75-143 189-239 (293)
113 PF13607 Succ_CoA_lig: Succiny 79.5 8.1 0.00018 26.9 5.7 51 73-142 41-91 (138)
114 cd07015 Clp_protease_NfeD Nodu 78.9 11 0.00024 27.3 6.5 58 66-143 10-72 (172)
115 PLN02522 ATP citrate (pro-S)-l 74.5 11 0.00024 32.8 6.3 50 74-142 210-260 (608)
116 PTZ00187 succinyl-CoA syntheta 70.9 16 0.00036 29.2 6.1 22 74-95 212-233 (317)
117 cd07017 S14_ClpP_2 Caseinolyti 64.4 42 0.0009 23.9 6.7 59 66-143 18-78 (171)
118 COG0528 PyrH Uridylate kinase 64.3 34 0.00074 26.2 6.4 54 37-99 4-57 (238)
119 PF00549 Ligase_CoA: CoA-ligas 63.2 25 0.00055 25.0 5.3 57 73-142 60-118 (153)
120 COG0616 SppA Periplasmic serin 62.8 27 0.00058 27.8 5.9 56 71-143 82-139 (317)
121 PRK12553 ATP-dependent Clp pro 59.4 25 0.00055 26.1 4.9 59 66-143 44-104 (207)
122 PRK00277 clpP ATP-dependent Cl 59.1 53 0.0011 24.2 6.6 60 65-143 39-100 (200)
123 TIGR00377 ant_ant_sig anti-ant 58.9 40 0.00086 21.5 5.4 49 40-96 4-52 (108)
124 PRK11778 putative inner membra 58.1 41 0.00089 27.1 6.2 74 50-143 90-165 (330)
125 COG1030 NfeD Membrane-bound se 57.8 1E+02 0.0023 25.8 8.5 65 51-139 27-92 (436)
126 PF00574 CLP_protease: Clp pro 57.1 55 0.0012 23.3 6.3 59 66-143 25-85 (182)
127 cd04241 AAK_FomA-like AAK_FomA 56.8 28 0.00061 26.3 4.9 37 59-98 13-49 (252)
128 PF01740 STAS: STAS domain; I 56.3 52 0.0011 21.3 5.7 46 42-95 3-56 (117)
129 TIGR02717 AcCoA-syn-alpha acet 54.1 38 0.00082 28.2 5.6 51 73-142 190-240 (447)
130 PRK14512 ATP-dependent Clp pro 54.0 50 0.0011 24.4 5.7 59 66-143 32-92 (197)
131 PF03464 eRF1_2: eRF1 domain 2 53.7 27 0.00058 23.9 4.0 45 52-96 25-83 (133)
132 PF01039 Carboxyl_trans: Carbo 51.7 1.5E+02 0.0032 25.1 9.1 82 52-143 59-142 (493)
133 KOG1255|consensus 49.3 50 0.0011 25.8 5.1 69 51-142 203-272 (329)
134 COG0420 SbcD DNA repair exonuc 49.3 65 0.0014 26.0 6.2 72 51-138 10-81 (390)
135 smart00463 SMR Small MutS-rela 48.0 49 0.0011 20.2 4.3 31 68-98 12-43 (80)
136 PRK14556 pyrH uridylate kinase 47.5 42 0.00092 25.9 4.6 55 38-101 15-69 (249)
137 PF01713 Smr: Smr domain; Int 46.7 35 0.00077 21.0 3.5 36 68-103 9-44 (83)
138 TIGR02886 spore_II_AA anti-sig 46.5 75 0.0016 20.2 6.6 51 42-100 2-52 (106)
139 PRK13505 formate--tetrahydrofo 46.3 41 0.0009 29.0 4.7 24 119-142 359-382 (557)
140 PF07859 Abhydrolase_3: alpha/ 45.5 19 0.00041 25.8 2.3 39 64-107 43-86 (211)
141 cd07561 Peptidase_S41_CPP_like 44.3 69 0.0015 24.6 5.3 46 49-101 63-111 (256)
142 cd07393 MPP_DR1119 Deinococcus 43.7 1.3E+02 0.0029 22.3 6.7 31 63-95 17-50 (232)
143 PRK06091 membrane protein FdrA 42.8 87 0.0019 27.1 6.1 18 125-142 272-289 (555)
144 PF02350 Epimerase_2: UDP-N-ac 42.5 49 0.0011 26.5 4.4 44 49-94 179-222 (346)
145 PRK01160 hypothetical protein; 40.3 87 0.0019 23.0 5.0 41 53-96 85-125 (178)
146 PF12268 DUF3612: Protein of u 39.5 25 0.00053 25.2 2.0 25 86-110 79-103 (178)
147 CHL00028 clpP ATP-dependent Cl 38.9 1.3E+02 0.0028 22.3 5.9 59 66-143 39-99 (200)
148 cd03255 ABC_MJ0796_Lo1CDE_FtsE 38.1 1E+02 0.0022 22.3 5.3 38 54-94 161-198 (218)
149 TIGR03821 AblA_like_1 lysine-2 38.0 44 0.00096 26.5 3.5 28 72-100 128-155 (321)
150 cd03225 ABC_cobalt_CbiO_domain 37.7 1.1E+02 0.0024 22.1 5.4 38 54-94 155-192 (211)
151 PLN00049 carboxyl-terminal pro 37.4 93 0.002 25.4 5.4 48 51-105 195-245 (389)
152 PRK10584 putative ABC transpor 37.3 1.1E+02 0.0023 22.4 5.4 39 54-94 167-205 (228)
153 TIGR03822 AblA_like_2 lysine-2 37.3 41 0.00089 26.7 3.2 38 71-108 121-158 (321)
154 cd03300 ABC_PotA_N PotA is an 37.2 1E+02 0.0022 22.7 5.2 39 54-94 151-189 (232)
155 cd03267 ABC_NatA_like Similar 36.8 1.2E+02 0.0027 22.4 5.6 38 54-94 174-211 (236)
156 PF08436 DXP_redisom_C: 1-deox 36.2 43 0.00093 21.5 2.5 37 73-111 10-46 (84)
157 cd03216 ABC_Carb_Monos_I This 36.0 1.4E+02 0.003 20.8 5.6 38 54-94 103-140 (163)
158 TIGR02211 LolD_lipo_ex lipopro 35.8 1.2E+02 0.0025 22.1 5.3 39 54-94 162-200 (221)
159 cd03297 ABC_ModC_molybdenum_tr 35.8 1.1E+02 0.0024 22.1 5.2 39 54-94 152-190 (214)
160 cd03298 ABC_ThiQ_thiamine_tran 35.7 1.2E+02 0.0025 22.0 5.2 40 53-94 148-187 (211)
161 TIGR01277 thiQ thiamine ABC tr 34.9 1.3E+02 0.0027 21.9 5.4 39 54-94 149-187 (213)
162 PRK10247 putative ABC transpor 34.4 1.2E+02 0.0027 22.2 5.3 40 54-95 158-197 (225)
163 PF04439 Adenyl_transf: Strept 34.2 48 0.001 26.0 3.1 21 75-95 9-29 (282)
164 KOG2567|consensus 34.1 75 0.0016 23.1 3.7 34 77-110 35-68 (179)
165 PF04536 TPM: TLP18.3, Psb32 a 34.1 62 0.0013 21.0 3.3 28 66-93 2-29 (119)
166 cd03261 ABC_Org_Solvent_Resist 33.8 1.2E+02 0.0027 22.3 5.2 39 54-94 157-195 (235)
167 PF06057 VirJ: Bacterial virul 33.5 58 0.0013 24.2 3.3 55 51-109 29-85 (192)
168 cd03214 ABC_Iron-Siderophores_ 33.5 1.4E+02 0.003 21.0 5.3 38 54-94 118-155 (180)
169 PRK03195 hypothetical protein; 33.5 1.1E+02 0.0023 22.6 4.6 50 51-102 121-172 (186)
170 COG0793 Prc Periplasmic protea 33.3 91 0.002 25.7 4.7 50 52-108 205-257 (406)
171 PF13304 AAA_21: AAA domain; P 33.3 1.4E+02 0.003 21.0 5.3 39 53-94 259-297 (303)
172 cd03265 ABC_DrrA DrrA is the A 33.2 1.4E+02 0.003 21.7 5.4 39 54-94 152-190 (220)
173 PRK11831 putative ABC transpor 32.7 1.3E+02 0.0029 22.8 5.3 39 54-94 164-202 (269)
174 PRK09984 phosphonate/organopho 32.6 1.2E+02 0.0027 22.7 5.1 40 54-95 173-212 (262)
175 TIGR03410 urea_trans_UrtE urea 32.4 1.5E+02 0.0033 21.6 5.5 39 54-94 152-190 (230)
176 PF12683 DUF3798: Protein of u 32.4 85 0.0018 24.7 4.1 38 52-95 34-71 (275)
177 cd03257 ABC_NikE_OppD_transpor 32.2 1.4E+02 0.003 21.7 5.2 37 54-93 166-202 (228)
178 TIGR03124 ctirate_citX holo-AC 32.2 1E+02 0.0022 22.3 4.3 61 51-111 27-95 (165)
179 cd03235 ABC_Metallic_Cations A 32.2 1.5E+02 0.0033 21.3 5.4 37 54-94 153-189 (213)
180 cd03259 ABC_Carb_Solutes_like 31.9 1.4E+02 0.0031 21.5 5.2 38 54-94 151-188 (213)
181 smart00245 TSPc tail specific 31.9 1.4E+02 0.003 21.6 5.1 38 51-95 29-68 (192)
182 TIGR01184 ntrCD nitrate transp 31.8 1.5E+02 0.0032 21.9 5.4 38 54-93 135-172 (230)
183 PRK12551 ATP-dependent Clp pro 31.8 2.1E+02 0.0045 21.1 6.0 59 66-143 34-94 (196)
184 PRK13646 cbiO cobalt transport 31.8 1.4E+02 0.003 23.0 5.3 39 54-94 166-204 (286)
185 cd03293 ABC_NrtD_SsuB_transpor 31.7 1.5E+02 0.0032 21.5 5.3 39 54-94 152-190 (220)
186 cd03301 ABC_MalK_N The N-termi 31.6 1.4E+02 0.0031 21.4 5.2 39 54-94 151-189 (213)
187 PRK11701 phnK phosphonate C-P 31.4 1.5E+02 0.0032 22.3 5.3 39 54-94 172-210 (258)
188 cd03256 ABC_PhnC_transporter A 31.2 1.4E+02 0.0031 21.9 5.2 39 54-94 165-203 (241)
189 PRK15112 antimicrobial peptide 30.9 1.4E+02 0.003 22.6 5.2 40 53-94 169-208 (267)
190 PRK10908 cell division protein 30.7 1.7E+02 0.0037 21.3 5.5 38 54-94 158-195 (222)
191 PRK10253 iron-enterobactin tra 30.7 1.5E+02 0.0033 22.4 5.3 39 54-94 164-202 (265)
192 PRK11629 lolD lipoprotein tran 30.6 1.6E+02 0.0036 21.6 5.4 39 54-94 166-204 (233)
193 cd03229 ABC_Class3 This class 30.6 1.8E+02 0.0038 20.5 5.4 39 53-94 120-158 (178)
194 TIGR00960 3a0501s02 Type II (G 30.3 1.8E+02 0.0038 21.1 5.5 38 54-94 159-196 (216)
195 cd03295 ABC_OpuCA_Osmoprotecti 30.3 1.4E+02 0.0031 22.1 5.1 38 54-94 156-193 (242)
196 PF11215 DUF3010: Protein of u 30.3 2E+02 0.0043 20.2 5.7 48 51-103 31-80 (138)
197 PRK05368 homoserine O-succinyl 30.2 2.4E+02 0.0052 22.4 6.4 43 52-96 67-109 (302)
198 PRK11300 livG leucine/isoleuci 30.2 1.7E+02 0.0037 21.8 5.5 39 54-94 174-212 (255)
199 TIGR03864 PQQ_ABC_ATP ABC tran 30.1 1.6E+02 0.0035 21.7 5.3 40 54-95 153-192 (236)
200 TIGR02315 ABC_phnC phosphonate 30.0 1.5E+02 0.0032 21.9 5.1 39 54-94 166-204 (243)
201 cd03213 ABCG_EPDR ABCG transpo 29.8 1.9E+02 0.0042 20.6 5.6 37 54-94 132-168 (194)
202 PRK15093 antimicrobial peptide 29.5 1.6E+02 0.0034 23.3 5.4 39 54-94 179-217 (330)
203 PRK11247 ssuB aliphatic sulfon 29.5 1.6E+02 0.0035 22.3 5.3 38 54-93 154-191 (257)
204 cd03258 ABC_MetN_methionine_tr 29.4 1.6E+02 0.0035 21.6 5.2 38 54-94 161-198 (233)
205 PRK13633 cobalt transporter AT 29.3 1.5E+02 0.0034 22.6 5.2 39 54-94 165-203 (280)
206 PRK13634 cbiO cobalt transport 29.3 1.6E+02 0.0035 22.7 5.3 39 54-94 166-204 (290)
207 PRK11248 tauB taurine transpor 29.3 1.6E+02 0.0035 22.2 5.2 28 54-83 149-176 (255)
208 PF01268 FTHFS: Formate--tetra 29.2 69 0.0015 27.7 3.4 24 119-142 358-381 (557)
209 TIGR03005 ectoine_ehuA ectoine 29.1 1.7E+02 0.0036 21.8 5.3 40 54-95 167-206 (252)
210 cd03296 ABC_CysA_sulfate_impor 29.1 1.6E+02 0.0035 21.7 5.2 39 54-94 157-195 (239)
211 PF01990 ATP-synt_F: ATP synth 29.1 68 0.0015 20.4 2.7 24 71-94 27-50 (95)
212 cd03230 ABC_DR_subfamily_A Thi 29.0 1.8E+02 0.0039 20.3 5.2 36 54-93 116-151 (173)
213 TIGR01166 cbiO cobalt transpor 29.0 2E+02 0.0042 20.4 5.4 36 54-93 148-183 (190)
214 TIGR02323 CP_lyasePhnK phospho 28.9 1.7E+02 0.0036 21.8 5.3 39 54-94 169-207 (253)
215 PRK11148 cyclic 3',5'-adenosin 28.9 1.6E+02 0.0034 22.5 5.2 29 67-95 35-64 (275)
216 cd07560 Peptidase_S41_CPP C-te 28.5 1.5E+02 0.0032 21.9 4.8 37 52-95 50-88 (211)
217 TIGR02832 spo_yunB sporulation 28.4 49 0.0011 24.8 2.2 48 34-83 59-107 (204)
218 PRK10419 nikE nickel transport 28.3 1.7E+02 0.0036 22.3 5.2 40 54-95 172-211 (268)
219 PRK10575 iron-hydroxamate tran 28.3 1.7E+02 0.0037 22.1 5.3 41 53-95 167-207 (265)
220 TIGR03608 L_ocin_972_ABC putat 28.2 2.1E+02 0.0044 20.4 5.5 38 53-94 154-191 (206)
221 KOG3997|consensus 28.1 79 0.0017 24.3 3.2 54 51-107 139-192 (281)
222 PRK10771 thiQ thiamine transpo 28.0 1.8E+02 0.004 21.3 5.3 39 54-94 150-188 (232)
223 PF06935 DUF1284: Protein of u 27.9 1.3E+02 0.0029 19.7 4.0 30 66-95 2-31 (103)
224 COG4637 Predicted ATPase [Gene 27.7 1.6E+02 0.0034 24.1 4.9 38 53-94 292-329 (373)
225 PRK13642 cbiO cobalt transport 27.5 1.8E+02 0.004 22.1 5.3 39 54-94 161-199 (277)
226 COG1618 Predicted nucleotide k 27.5 78 0.0017 23.2 3.0 59 64-140 79-138 (179)
227 cd03299 ABC_ModC_like Archeal 27.5 1.9E+02 0.0042 21.3 5.4 39 54-94 150-188 (235)
228 TIGR00968 3a0106s01 sulfate AB 27.5 1.9E+02 0.0041 21.4 5.3 40 53-94 150-189 (237)
229 cd03233 ABC_PDR_domain1 The pl 27.5 2.1E+02 0.0046 20.6 5.5 39 54-94 139-177 (202)
230 PRK14250 phosphate ABC transpo 27.4 1.9E+02 0.0041 21.4 5.3 39 54-94 152-190 (241)
231 cd03215 ABC_Carb_Monos_II This 27.2 2.3E+02 0.0049 20.0 5.5 37 54-94 125-161 (182)
232 COG2840 Uncharacterized protei 27.2 1.6E+02 0.0034 21.8 4.6 35 68-104 107-141 (184)
233 TIGR02982 heterocyst_DevA ABC 27.1 1.9E+02 0.0041 21.0 5.2 38 54-94 162-199 (220)
234 cd03246 ABCC_Protease_Secretio 27.1 2.2E+02 0.0048 19.8 5.5 36 54-93 117-152 (173)
235 cd03228 ABCC_MRP_Like The MRP 27.1 2.1E+02 0.0046 19.9 5.3 36 54-94 117-152 (171)
236 cd03226 ABC_cobalt_CbiO_domain 27.0 2.3E+02 0.0049 20.3 5.6 37 54-94 147-183 (205)
237 PRK13645 cbiO cobalt transport 26.9 1.8E+02 0.004 22.3 5.3 39 54-94 171-209 (289)
238 cd03237 ABC_RNaseL_inhibitor_d 26.8 1.9E+02 0.0042 21.7 5.3 38 54-93 136-173 (246)
239 PF00763 THF_DHG_CYH: Tetrahyd 26.7 75 0.0016 21.2 2.7 23 72-94 73-95 (117)
240 PRK13635 cbiO cobalt transport 26.7 2.1E+02 0.0044 22.0 5.5 40 54-95 161-200 (279)
241 COG1131 CcmA ABC-type multidru 26.6 2.2E+02 0.0048 22.1 5.7 39 53-94 156-194 (293)
242 PRK13540 cytochrome c biogenes 26.6 2.4E+02 0.0053 20.1 5.8 48 54-105 148-195 (200)
243 PF02358 Trehalose_PPase: Treh 26.5 48 0.001 24.6 1.9 30 67-96 17-46 (235)
244 cd03222 ABC_RNaseL_inhibitor T 26.5 2.5E+02 0.0053 20.2 5.6 39 54-94 92-130 (177)
245 cd03131 GATase1_HTS Type 1 glu 26.4 1.5E+02 0.0032 21.6 4.3 43 53-97 31-73 (175)
246 cd03231 ABC_CcmA_heme_exporter 26.2 2.4E+02 0.0053 20.2 5.6 37 54-94 146-182 (201)
247 PRK14558 pyrH uridylate kinase 26.2 1E+02 0.0022 23.0 3.6 34 64-98 18-51 (231)
248 PRK11231 fecE iron-dicitrate t 26.1 2.1E+02 0.0046 21.3 5.4 38 54-94 159-196 (255)
249 PF04019 DUF359: Protein of un 25.9 2.2E+02 0.0047 19.4 4.9 40 51-96 33-72 (121)
250 PRK13547 hmuV hemin importer A 25.9 1.9E+02 0.0041 22.1 5.2 40 53-94 174-213 (272)
251 TIGR00225 prc C-terminal pepti 25.9 1.5E+02 0.0032 23.5 4.6 38 51-95 152-191 (334)
252 PRK13652 cbiO cobalt transport 25.6 2.1E+02 0.0046 21.8 5.4 39 54-94 158-196 (277)
253 cd03292 ABC_FtsE_transporter F 25.6 2.3E+02 0.0051 20.3 5.4 38 54-94 157-194 (214)
254 cd03232 ABC_PDR_domain2 The pl 25.6 2.5E+02 0.0055 20.0 5.5 40 53-95 128-167 (192)
255 cd03268 ABC_BcrA_bacitracin_re 25.6 2.2E+02 0.0047 20.4 5.2 37 54-94 147-183 (208)
256 cd02974 AhpF_NTD_N Alkyl hydro 25.5 1.6E+02 0.0036 18.9 4.1 27 66-94 2-28 (94)
257 PRK13539 cytochrome c biogenes 25.5 2.4E+02 0.0052 20.3 5.5 37 54-94 148-184 (207)
258 PRK13637 cbiO cobalt transport 25.4 2.1E+02 0.0046 22.0 5.4 39 54-94 165-203 (287)
259 TIGR03790 conserved hypothetic 25.3 2.3E+02 0.005 22.8 5.5 42 50-93 30-83 (316)
260 cd03224 ABC_TM1139_LivF_branch 25.3 2.4E+02 0.0052 20.4 5.5 37 54-94 153-189 (222)
261 TIGR02324 CP_lyasePhnL phospho 25.1 2.5E+02 0.0053 20.4 5.5 38 54-94 170-207 (224)
262 PRK10619 histidine/lysine/argi 25.1 2.4E+02 0.0051 21.1 5.5 38 54-94 173-210 (257)
263 PRK09544 znuC high-affinity zi 25.0 2.2E+02 0.0048 21.4 5.3 39 54-94 141-179 (251)
264 cd03263 ABC_subfamily_A The AB 25.0 2.6E+02 0.0056 20.2 5.6 37 54-95 154-190 (220)
265 COG1909 Uncharacterized protei 24.9 1.6E+02 0.0035 21.3 4.2 38 53-96 80-117 (167)
266 COG2201 CheB Chemotaxis respon 24.9 2.9E+02 0.0064 22.5 6.1 59 40-103 235-293 (350)
267 cd03278 ABC_SMC_barmotin Barmo 24.9 2.5E+02 0.0054 20.3 5.4 38 53-94 137-174 (197)
268 PRK02228 V-type ATP synthase s 24.8 1.2E+02 0.0027 19.6 3.4 23 72-94 30-52 (100)
269 PRK10418 nikD nickel transport 24.7 2.2E+02 0.0048 21.3 5.3 40 53-94 160-199 (254)
270 TIGR00685 T6PP trehalose-phosp 24.7 1.1E+02 0.0024 22.9 3.5 25 71-95 27-51 (244)
271 PRK14053 methyltransferase; Pr 24.6 1.2E+02 0.0026 22.5 3.5 60 50-109 22-88 (194)
272 COG1509 KamA Lysine 2,3-aminom 24.5 74 0.0016 26.1 2.6 27 70-96 142-168 (369)
273 TIGR01189 ccmA heme ABC export 24.4 2.7E+02 0.0058 19.8 5.6 39 53-94 147-185 (198)
274 cd03266 ABC_NatA_sodium_export 24.4 2.6E+02 0.0057 20.1 5.5 37 54-94 157-193 (218)
275 PRK13548 hmuV hemin importer A 24.3 2.2E+02 0.0048 21.4 5.2 39 53-94 160-198 (258)
276 cd03238 ABC_UvrA The excision 24.3 2.7E+02 0.0059 19.9 5.5 38 54-94 110-147 (176)
277 cd03279 ABC_sbcCD SbcCD and ot 24.2 2.7E+02 0.0059 20.2 5.6 39 53-94 153-191 (213)
278 TIGR02770 nickel_nikD nickel i 24.2 2.2E+02 0.0048 20.9 5.1 38 54-94 146-183 (230)
279 COG4921 Uncharacterized protei 24.2 2.4E+02 0.0053 19.3 5.7 47 51-104 41-87 (131)
280 PRK14258 phosphate ABC transpo 24.2 2.4E+02 0.0052 21.2 5.4 37 54-93 171-207 (261)
281 PRK14514 ATP-dependent Clp pro 24.0 3.2E+02 0.007 20.6 6.1 59 65-143 62-123 (221)
282 PRK15079 oligopeptide ABC tran 24.0 2.1E+02 0.0046 22.7 5.2 39 54-94 182-220 (331)
283 cd03269 ABC_putative_ATPase Th 24.0 2.4E+02 0.0052 20.2 5.2 37 54-94 149-185 (210)
284 TIGR02769 nickel_nikE nickel i 23.9 2.3E+02 0.0049 21.4 5.2 39 54-94 171-209 (265)
285 TIGR02314 ABC_MetN D-methionin 23.9 2.2E+02 0.0047 22.8 5.3 39 54-94 161-199 (343)
286 TIGR01978 sufC FeS assembly AT 23.8 2.6E+02 0.0057 20.5 5.5 37 54-94 165-201 (243)
287 PRK13636 cbiO cobalt transport 23.8 2.3E+02 0.005 21.7 5.3 39 54-94 162-200 (283)
288 PTZ00346 histone deacetylase; 23.8 3.6E+02 0.0078 22.7 6.6 71 64-141 246-316 (429)
289 cd03294 ABC_Pro_Gly_Bertaine T 23.7 2.4E+02 0.0052 21.4 5.4 39 54-94 181-219 (269)
290 PRK13640 cbiO cobalt transport 23.7 2.4E+02 0.0051 21.6 5.3 39 54-94 164-202 (282)
291 PTZ00410 NAD-dependent SIR2; P 23.7 1.3E+02 0.0028 24.5 3.9 38 62-102 8-45 (349)
292 PRK13538 cytochrome c biogenes 23.6 2.8E+02 0.0061 19.9 5.5 37 54-94 150-186 (204)
293 PRK09473 oppD oligopeptide tra 23.6 2.2E+02 0.0048 22.6 5.2 39 54-94 182-220 (330)
294 PRK13543 cytochrome c biogenes 23.5 2.8E+02 0.006 20.1 5.5 38 54-94 158-195 (214)
295 cd03219 ABC_Mj1267_LivG_branch 23.5 2.7E+02 0.0059 20.3 5.5 37 54-94 164-200 (236)
296 cd07396 MPP_Nbla03831 Homo sap 23.3 3.3E+02 0.0072 20.6 6.2 32 63-95 18-49 (267)
297 PF08747 DUF1788: Domain of un 23.2 1.2E+02 0.0027 20.7 3.3 16 84-99 59-74 (126)
298 cd04239 AAK_UMPK-like AAK_UMPK 23.1 1.6E+02 0.0035 21.8 4.2 32 65-97 17-48 (229)
299 PF05582 Peptidase_U57: YabG p 23.1 3.5E+02 0.0076 21.5 6.0 41 68-112 140-180 (287)
300 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 23.0 2.8E+02 0.0061 20.3 5.5 38 53-94 162-199 (224)
301 cd03240 ABC_Rad50 The catalyti 22.9 2.9E+02 0.0063 20.0 5.5 40 53-94 141-181 (204)
302 TIGR00515 accD acetyl-CoA carb 22.9 3.8E+02 0.0083 21.1 10.3 83 52-143 122-204 (285)
303 PRK11264 putative amino-acid A 22.7 2.8E+02 0.0061 20.5 5.5 38 54-94 165-202 (250)
304 PRK11614 livF leucine/isoleuci 22.7 2.8E+02 0.0061 20.3 5.4 37 54-94 158-194 (237)
305 TIGR03820 lys_2_3_AblA lysine- 22.5 1.1E+02 0.0025 25.4 3.5 27 71-97 140-166 (417)
306 PF04208 MtrA: Tetrahydrometha 22.5 1.1E+02 0.0025 22.3 3.0 61 49-109 21-91 (176)
307 PRK00964 tetrahydromethanopter 22.4 1.2E+02 0.0026 23.1 3.3 61 49-109 24-95 (225)
308 TIGR02673 FtsE cell division A 22.4 2.9E+02 0.0064 19.8 5.4 38 54-94 158-195 (214)
309 PRK13650 cbiO cobalt transport 22.3 2.7E+02 0.0058 21.3 5.4 40 54-95 161-200 (279)
310 PRK03695 vitamin B12-transport 22.2 2.9E+02 0.0063 20.6 5.5 38 53-94 153-190 (248)
311 PRK05665 amidotransferase; Pro 22.1 1.5E+02 0.0032 22.5 3.8 44 87-142 58-101 (240)
312 TIGR02142 modC_ABC molybdenum 21.9 2.6E+02 0.0057 22.3 5.4 39 54-94 152-190 (354)
313 PRK12319 acetyl-CoA carboxylas 21.8 3.8E+02 0.0083 20.7 8.4 72 63-143 76-147 (256)
314 TIGR03740 galliderm_ABC gallid 21.8 2.9E+02 0.0064 20.0 5.4 37 54-94 145-181 (223)
315 PRK09580 sufC cysteine desulfu 21.8 3.1E+02 0.0066 20.2 5.5 37 54-94 166-202 (248)
316 TIGR03328 salvage_mtnB methylt 21.8 1.3E+02 0.0028 21.9 3.3 40 68-111 137-176 (193)
317 TIGR02855 spore_yabG sporulati 21.8 3.4E+02 0.0074 21.4 5.7 40 69-112 140-179 (283)
318 cd03245 ABCC_bacteriocin_expor 21.8 2.7E+02 0.0058 20.1 5.1 36 54-94 161-196 (220)
319 cd04254 AAK_UMPK-PyrH-Ec UMP k 21.8 2.2E+02 0.0047 21.2 4.7 35 64-99 18-52 (231)
320 COG3840 ThiQ ABC-type thiamine 21.7 2.3E+02 0.005 21.4 4.6 39 55-95 151-189 (231)
321 PRK05333 NAD-dependent deacety 21.7 1.5E+02 0.0032 23.1 3.8 32 66-102 4-35 (285)
322 COG1122 CbiO ABC-type cobalt t 21.7 3.2E+02 0.0069 20.7 5.6 39 54-94 159-197 (235)
323 cd00267 ABC_ATPase ABC (ATP-bi 21.7 2.7E+02 0.0059 18.9 5.5 37 54-94 101-137 (157)
324 PRK13648 cbiO cobalt transport 21.6 2.8E+02 0.0062 20.9 5.4 40 54-95 163-202 (269)
325 cd08163 MPP_Cdc1 Saccharomyces 21.5 3.5E+02 0.0077 20.6 5.9 37 59-95 17-54 (257)
326 PRK11022 dppD dipeptide transp 21.5 2.7E+02 0.0058 22.0 5.3 39 54-94 174-212 (326)
327 cd03260 ABC_PstB_phosphate_tra 21.5 3.1E+02 0.0067 19.9 5.4 36 54-94 162-197 (227)
328 PRK11308 dppF dipeptide transp 21.5 2.5E+02 0.0055 22.2 5.2 39 54-94 175-213 (327)
329 PRK03957 V-type ATP synthase s 21.4 1.4E+02 0.0031 19.4 3.2 23 72-94 30-52 (100)
330 PRK15056 manganese/iron transp 21.4 3E+02 0.0065 20.9 5.5 39 54-95 163-201 (272)
331 PRK05654 acetyl-CoA carboxylas 21.4 4.1E+02 0.009 20.9 10.5 83 52-143 123-205 (292)
332 TIGR01187 potA spermidine/putr 21.3 2.7E+02 0.0057 22.0 5.3 39 54-94 121-159 (325)
333 COG0412 Dienelactone hydrolase 21.3 1.4E+02 0.0031 22.4 3.6 41 68-112 90-132 (236)
334 PRK10851 sulfate/thiosulfate t 21.3 2.8E+02 0.006 22.3 5.4 40 54-95 157-196 (353)
335 PF03802 CitX: Apo-citrate lya 21.2 2.2E+02 0.0047 20.5 4.4 60 51-110 29-96 (170)
336 cd03262 ABC_HisP_GlnQ_permease 21.2 3.2E+02 0.0069 19.5 5.5 37 54-94 156-192 (213)
337 PTZ00386 formyl tetrahydrofola 21.1 1.6E+02 0.0034 25.9 4.1 23 120-142 425-447 (625)
338 PF13307 Helicase_C_2: Helicas 21.1 1.7E+02 0.0037 20.5 3.8 33 73-107 47-79 (167)
339 TIGR01111 mtrA N5-methyltetrah 21.0 1.4E+02 0.003 22.9 3.3 60 50-109 25-95 (238)
340 PHA02546 47 endonuclease subun 20.9 3.9E+02 0.0084 21.2 6.2 27 68-95 22-48 (340)
341 cd03218 ABC_YhbG The ABC trans 20.8 3.3E+02 0.0072 19.8 5.5 37 54-94 154-190 (232)
342 PRK13649 cbiO cobalt transport 20.8 3.1E+02 0.0067 20.8 5.5 28 54-83 166-193 (280)
343 TIGR01117 mmdA methylmalonyl-C 20.8 5.4E+02 0.012 22.0 10.9 72 63-143 328-399 (512)
344 KOG3985|consensus 20.6 2.5E+02 0.0054 21.8 4.6 54 50-108 133-186 (283)
345 cd03264 ABC_drug_resistance_li 20.4 3.1E+02 0.0068 19.6 5.2 36 54-94 151-186 (211)
346 PRK13641 cbiO cobalt transport 20.4 3.3E+02 0.0071 20.9 5.5 38 54-94 166-203 (287)
347 TIGR03269 met_CoM_red_A2 methy 20.4 2.6E+02 0.0056 23.5 5.3 39 54-94 189-227 (520)
348 COG4032 Predicted thiamine-pyr 20.3 73 0.0016 22.8 1.7 36 72-107 28-65 (172)
349 PRK11124 artP arginine transpo 20.2 3.3E+02 0.0072 20.0 5.4 37 54-94 162-198 (242)
350 cd05015 SIS_PGI_1 Phosphogluco 20.2 1.9E+02 0.004 20.2 3.8 32 69-100 2-33 (158)
351 PRK11153 metN DL-methionine tr 20.2 3E+02 0.0065 21.9 5.4 39 54-94 161-199 (343)
352 cd03253 ABCC_ATM1_transporter 20.1 3E+02 0.0066 20.1 5.2 36 54-94 158-193 (236)
353 PF01738 DLH: Dienelactone hyd 20.1 1.1E+02 0.0024 22.1 2.7 37 69-109 77-115 (218)
354 PRK06754 mtnB methylthioribulo 20.0 3.6E+02 0.0077 19.8 5.5 39 72-112 148-186 (208)
355 PRK09493 glnQ glutamine ABC tr 20.0 3.5E+02 0.0076 19.8 5.5 37 54-94 157-193 (240)
No 1
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=99.93 E-value=4e-25 Score=169.50 Aligned_cols=104 Identities=54% Similarity=0.886 Sum_probs=89.3
Q ss_pred CcccEEEEEecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchhhhhhhhhh
Q psy9280 37 KFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQTYAAN 116 (143)
Q Consensus 37 ~~~~v~ve~~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~ 116 (143)
.++.+.+++++ +|++|+||||++.|+++.+|+++|.+++++++.|+++|+|||+|.|++||+|+|++++........
T Consensus 2 ~~~~v~~~~~~---~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~ 78 (257)
T PRK05862 2 AYETILVETRG---RVGLITLNRPKALNALNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMADLSFMDV 78 (257)
T ss_pred CCceEEEEeeC---CEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCceECCcChHhHhccchhHH
Confidence 45678888876 899999999999999999999999999999999999999999999999999999999765332222
Q ss_pred HHhHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 117 VKTGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 117 ~~~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
+...+...+.+|..+||||||+|||+|
T Consensus 79 ~~~~~~~~~~~l~~~~kpvIaav~G~a 105 (257)
T PRK05862 79 YKGDYITNWEKVARIRKPVIAAVAGYA 105 (257)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEccEE
Confidence 223345567889999999999999986
No 2
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=99.92 E-value=8.5e-25 Score=167.59 Aligned_cols=102 Identities=39% Similarity=0.633 Sum_probs=86.9
Q ss_pred ccEEEEEecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchhhhhhhhhhHH
Q psy9280 39 ENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQTYAANVK 118 (143)
Q Consensus 39 ~~v~ve~~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~ 118 (143)
..+.+++++ +|++|+||||++.|+++.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++..........
T Consensus 2 ~~i~~~~~~---~v~~itlnrp~~~Nal~~~~~~~L~~~~~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~ 78 (255)
T PRK09674 2 SELLVSRQQ---RVLLLTLNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMAEKDLAATLN 78 (255)
T ss_pred ceEEEEeEC---CEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecccChHhHhccchhhhHH
Confidence 457788876 99999999999999999999999999999999999999999999999999999999876432221122
Q ss_pred hHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 119 TGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 119 ~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
.....++.++..+||||||+|||+|
T Consensus 79 ~~~~~~~~~l~~~~kPvIAav~G~a 103 (255)
T PRK09674 79 DPRPQLWQRLQAFNKPLIAAVNGYA 103 (255)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCEe
Confidence 3345567889999999999999986
No 3
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=99.92 E-value=1e-24 Score=167.52 Aligned_cols=105 Identities=36% Similarity=0.466 Sum_probs=90.0
Q ss_pred CCcccEEEEEecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchhhhhhhhh
Q psy9280 36 VKFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQTYAA 115 (143)
Q Consensus 36 ~~~~~v~ve~~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~ 115 (143)
|.++.+.+++++ +|++|+||||++.|+++.+|+++|.+++++++.|+++|+|||+|.|++||+|+|++++.......
T Consensus 1 ~~~~~v~~~~~~---~va~Itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~ 77 (258)
T PRK06190 1 MTEPILLVETHD---RVRTLTLNRPEARNALSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDLKELGGDGSAY 77 (258)
T ss_pred CCCceEEEEeeC---CEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcccchh
Confidence 456788999887 99999999999999999999999999999999999999999999999999999999986432211
Q ss_pred hHHhHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 116 NVKTGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 116 ~~~~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
.....+..++.++..+|||+||+|||+|
T Consensus 78 ~~~~~~~~~~~~i~~~~kPvIAaV~G~a 105 (258)
T PRK06190 78 GAQDALPNPSPAWPAMRKPVIGAINGAA 105 (258)
T ss_pred hHHHHHHHHHHHHHhCCCCEEEEECCEe
Confidence 1123345677899999999999999986
No 4
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=99.92 E-value=1.4e-24 Score=166.91 Aligned_cols=105 Identities=38% Similarity=0.558 Sum_probs=89.4
Q ss_pred CCcccEEEEEecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchhhhhh---
Q psy9280 36 VKFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQT--- 112 (143)
Q Consensus 36 ~~~~~v~ve~~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~--- 112 (143)
|.|+.+.++.++ +|++|+||||++.|+++.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++....
T Consensus 1 ~~~~~i~~~~~~---~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~ 77 (262)
T PRK05995 1 MMYETLEIEQRG---QVATVTLNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGAGKAFCAGADLNWMKKMAGYS 77 (262)
T ss_pred CCCceEEEEeeC---CEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCccccCcCHHHHhhhcccC
Confidence 457789999887 99999999999999999999999999999999999999999999999999999999875321
Q ss_pred hhhhH--HhHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 113 YAANV--KTGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 113 ~~~~~--~~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
..... ...+.+++.++..+|||+||+|||+|
T Consensus 78 ~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a 110 (262)
T PRK05995 78 DDENRADARRLADMLRAIYRCPKPVIARVHGDA 110 (262)
T ss_pred chhhhhHHHHHHHHHHHHHcCCCCEEEEECCEE
Confidence 11111 13445677899999999999999986
No 5
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=99.92 E-value=2.1e-24 Score=165.88 Aligned_cols=106 Identities=40% Similarity=0.590 Sum_probs=88.9
Q ss_pred CCcccEEEEEecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchhhhhhhhh
Q psy9280 36 VKFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQTYAA 115 (143)
Q Consensus 36 ~~~~~v~ve~~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~ 115 (143)
...+.+.++..+ ++|++|+||||++.|+++.+|+.+|.+++++++.|+++|+|||+|.|++||+|+|++++.......
T Consensus 4 ~~~~~~~~~~~~--~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~ 81 (261)
T PRK08138 4 TATDVVLLERPA--DGVALLRLNRPEARNALNMEVRQQLAEHFTELSEDPDIRAIVLTGGEKVFAAGADIKEFATAGAIE 81 (261)
T ss_pred CCCCCEEEEEcc--CCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCeeCCcCHHHHhccchhH
Confidence 345678888732 389999999999999999999999999999999999999999999999999999999876432222
Q ss_pred hHHhHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 116 NVKTGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 116 ~~~~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
.+...+.+++..+..+|||+||+|||+|
T Consensus 82 ~~~~~~~~~~~~l~~~~kPvIaav~G~a 109 (261)
T PRK08138 82 MYLRHTERYWEAIAQCPKPVIAAVNGYA 109 (261)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEccEE
Confidence 2223445677889999999999999986
No 6
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=99.92 E-value=2.4e-24 Score=165.89 Aligned_cols=105 Identities=25% Similarity=0.449 Sum_probs=88.7
Q ss_pred CCcccEEEEEecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCC-CeeEEEEEcCCCCccCCCCcchhhhhhh-
Q psy9280 36 VKFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDS-SVAAIVLTGNEKAFAAGADIKEMLNQTY- 113 (143)
Q Consensus 36 ~~~~~v~ve~~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~-~vr~vVltg~g~~FsaG~Dl~~~~~~~~- 113 (143)
|.|+.+.+++++ +|++|+||||+++|+++.+|+++|.++++.++.|+ ++|+|||+|.|++||+|+|++++.....
T Consensus 1 ~~~~~v~~~~~~---~i~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~ 77 (266)
T PRK05981 1 MQFKKVTLDFDG---GVAILTLDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAGRGFCTGANLQGRGSGGRE 77 (266)
T ss_pred CCcceEEEEeEC---CEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccccCHHhhhccccc
Confidence 468889999887 99999999999999999999999999999999876 4999999999999999999998754211
Q ss_pred -----h--hhHHhHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 114 -----A--ANVKTGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 114 -----~--~~~~~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
. ......+..++.+|..+||||||+|||+|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a 114 (266)
T PRK05981 78 SDSGGDAGAALETAYHPFLRRLRNLPCPIVTAVNGPA 114 (266)
T ss_pred ccccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCEe
Confidence 0 11113345677899999999999999987
No 7
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=99.92 E-value=2.8e-24 Score=166.05 Aligned_cols=104 Identities=33% Similarity=0.486 Sum_probs=88.0
Q ss_pred CcccEEEEEecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchhhhhh----
Q psy9280 37 KFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQT---- 112 (143)
Q Consensus 37 ~~~~v~ve~~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~---- 112 (143)
.++.+.+++++ +|++|+||||++.|++|.+|+.+|.+++++++.|+++|+|||+|.|++||+|+|++++....
T Consensus 4 ~~~~v~~~~~~---~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~ 80 (272)
T PRK06142 4 TYESFTVELAD---HVAQVTLNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSGKHFSYGIDLPAMAGVFGQLG 80 (272)
T ss_pred CcceEEEEecC---CEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhhhccccc
Confidence 35678999876 99999999999999999999999999999999999999999999999999999999875411
Q ss_pred -----h-hhhH---HhHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 113 -----Y-AANV---KTGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 113 -----~-~~~~---~~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
. ...+ ...+.+++.++..+||||||+|||+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIAav~G~a 120 (272)
T PRK06142 81 KDGLARPRTDLRREILRLQAAINAVADCRKPVIAAVQGWC 120 (272)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHhCCCCEEEEecCcc
Confidence 0 0111 12345667889999999999999997
No 8
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=99.92 E-value=2.1e-24 Score=166.27 Aligned_cols=106 Identities=27% Similarity=0.369 Sum_probs=88.8
Q ss_pred CCcccEEEEEecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchhhhhhhh-
Q psy9280 36 VKFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQTYA- 114 (143)
Q Consensus 36 ~~~~~v~ve~~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~- 114 (143)
++|+++.+++++ ++|++|+||||++.|+++.+|+.+|.+++++++.|+++|+|||+|.|++||+|+|++++......
T Consensus 2 ~~~~~l~~~~~~--~~v~~itlnrp~~~Nal~~~~~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~ 79 (265)
T PRK05674 2 SDFQTIELIRDP--RGFATLWLSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSAGADLAWMQQSADLD 79 (265)
T ss_pred CCcceEEEEEcC--CCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhccccc
Confidence 358889999852 28999999999999999999999999999999999999999999999999999999987532110
Q ss_pred --hh--HHhHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 115 --AN--VKTGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 115 --~~--~~~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
.. ....+.+++.++..+||||||+|||+|
T Consensus 80 ~~~~~~~~~~~~~~~~~l~~~~kPvIaaV~G~a 112 (265)
T PRK05674 80 YNTNLDDARELAELMYNLYRLKIPTLAVVQGAA 112 (265)
T ss_pred chhhhHHHHHHHHHHHHHHcCCCCEEEEEcCEE
Confidence 11 112345677889999999999999986
No 9
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=99.92 E-value=2.2e-24 Score=166.97 Aligned_cols=104 Identities=29% Similarity=0.535 Sum_probs=88.4
Q ss_pred CcccEEEEEecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchhhhhhh--h
Q psy9280 37 KFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQTY--A 114 (143)
Q Consensus 37 ~~~~v~ve~~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~--~ 114 (143)
.|+++.+++++ +|++|+||||+++|+++.+|+.+|.+++++++.|+++|+|||+|.|++||+|+|++++..... .
T Consensus 6 ~~~~i~~~~~~---~va~itlnrp~~~Nal~~~m~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~ 82 (275)
T PRK09120 6 RWDTVKVEVED---GIAWVTLNRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSAGMDLKEYFRETDAQP 82 (275)
T ss_pred ccccEEEEEEC---CEEEEEecCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCceecCcCHHHHhhccccch
Confidence 47889999887 999999999999999999999999999999999999999999999999999999998743211 1
Q ss_pred h----hHHhHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 115 A----NVKTGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 115 ~----~~~~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
. .....+..++.+|..+||||||+|||+|
T Consensus 83 ~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a 115 (275)
T PRK09120 83 EILQERIRREAYGWWRRLRWYQKPTIAMVNGWC 115 (275)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCEE
Confidence 1 1112344567889999999999999986
No 10
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=99.92 E-value=2.7e-24 Score=165.14 Aligned_cols=105 Identities=36% Similarity=0.605 Sum_probs=90.0
Q ss_pred CCcccEEEEEecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCC-CCccCCCCcchhhhhhhh
Q psy9280 36 VKFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNE-KAFAAGADIKEMLNQTYA 114 (143)
Q Consensus 36 ~~~~~v~ve~~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g-~~FsaG~Dl~~~~~~~~~ 114 (143)
|+|+.+.+++++ +|++|+||||++.|+++.+|+.+|.+++++++.|+++|+|||+|.| ++||+|+|++++......
T Consensus 1 ~~~~~i~~~~~~---~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl~~~~~~~~~ 77 (260)
T PRK05809 1 MELKNVILEKEG---HIAVVTINRPKALNALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDLNEE 77 (260)
T ss_pred CCcceEEEEEeC---CEEEEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEcCCCCceeeCcChHhHhccChH
Confidence 467889999887 8999999999999999999999999999999999999999999988 999999999987643221
Q ss_pred h--hHHhHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 115 A--NVKTGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 115 ~--~~~~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
. .+......++.++..+||||||+|||+|
T Consensus 78 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a 108 (260)
T PRK05809 78 EGRKFGLLGNKVFRKLENLDKPVIAAINGFA 108 (260)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCEEEEEcCee
Confidence 1 1223345677899999999999999987
No 11
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=99.92 E-value=2.2e-24 Score=165.38 Aligned_cols=103 Identities=31% Similarity=0.473 Sum_probs=87.0
Q ss_pred cccEEEEEecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCC-CCccCCCCcchhhhhhhh-h
Q psy9280 38 FENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNE-KAFAAGADIKEMLNQTYA-A 115 (143)
Q Consensus 38 ~~~v~ve~~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g-~~FsaG~Dl~~~~~~~~~-~ 115 (143)
|+++.+++++ +|++||||||++.|+++.+|+++|.+++++++.|+++|+|||+|.| ++||+|+|++++...... .
T Consensus 1 ~~~i~~~~~~---~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~ 77 (256)
T TIGR03210 1 YEDILYEKRN---GIAWIMINRPAKMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGGYDGRG 77 (256)
T ss_pred CCceEEEeeC---CEEEEEEcCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhccccchh
Confidence 4678888876 9999999999999999999999999999999999999999999987 799999999987432111 1
Q ss_pred hHHhHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 116 NVKTGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 116 ~~~~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
.....+..++.++..+|||+||+|||+|
T Consensus 78 ~~~~~~~~~~~~l~~~~kPvIaav~G~a 105 (256)
T TIGR03210 78 TIGLPMEELHSAIRDVPKPVIARVQGYA 105 (256)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEECCEE
Confidence 1112345677899999999999999987
No 12
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=99.92 E-value=3e-24 Score=163.99 Aligned_cols=102 Identities=31% Similarity=0.450 Sum_probs=86.8
Q ss_pred ccEEEEEecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchhhhhhhh--hh
Q psy9280 39 ENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQTYA--AN 116 (143)
Q Consensus 39 ~~v~ve~~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~--~~ 116 (143)
+.+.+++++ +|++|+||||+++|++|.+|+++|.+++++++.|+++|+|||+|.|++||+|+|++++...... ..
T Consensus 3 ~~i~~~~~~---~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 79 (249)
T PRK05870 3 DPVLLDVDD---GVALITVNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAGKAFCAGADLTALGAAPGRPAED 79 (249)
T ss_pred ccEEEEccC---CEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCeecCcChHHHhcccccchHH
Confidence 457788776 9999999999999999999999999999999999999999999999999999999998643211 11
Q ss_pred HHhHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 117 VKTGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 117 ~~~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
....+.+.+..+..+||||||+|||+|
T Consensus 80 ~~~~~~~~~~~l~~~~kPvIaav~G~a 106 (249)
T PRK05870 80 GLRRIYDGFLAVASCPLPTIAAVNGAA 106 (249)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCEe
Confidence 123445667789999999999999986
No 13
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=99.91 E-value=4.4e-24 Score=164.12 Aligned_cols=104 Identities=31% Similarity=0.438 Sum_probs=86.9
Q ss_pred CCcccEEEEEecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchhhhhhh--
Q psy9280 36 VKFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQTY-- 113 (143)
Q Consensus 36 ~~~~~v~ve~~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~-- 113 (143)
|.|+.+.++.++ +|++|+||||+++|+++.+|+++|.+++++++ |+++|+|||+|.|++||+|+|++++.....
T Consensus 1 ~~~~~i~~~~~~---~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~-d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~ 76 (262)
T PRK08140 1 MMYETILLAIEA---GVATLTLNRPDKLNSFTREMHRELREALDQVE-DDGARALLLTGAGRGFCAGQDLADRDVTPGGA 76 (262)
T ss_pred CCCceEEEEeEC---CEEEEEecCCcccCCCCHHHHHHHHHHHHHhc-CCCceEEEEECCCCCcccCcChHHHhcccccc
Confidence 346778899887 99999999999999999999999999999999 999999999999999999999998753210
Q ss_pred -hh---hHHhHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 114 -AA---NVKTGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 114 -~~---~~~~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
.. .....+..++.++..+|||+||+|||+|
T Consensus 77 ~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a 110 (262)
T PRK08140 77 MPDLGESIETFYNPLVRRLRALPLPVIAAVNGVA 110 (262)
T ss_pred chhhHHHHHHHHHHHHHHHHhCCCCEEEEECCee
Confidence 11 1112233466789999999999999987
No 14
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=99.91 E-value=4.3e-24 Score=163.76 Aligned_cols=104 Identities=42% Similarity=0.651 Sum_probs=89.7
Q ss_pred CcccEEEEEecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchhhh-h-h-h
Q psy9280 37 KFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLN-Q-T-Y 113 (143)
Q Consensus 37 ~~~~v~ve~~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~-~-~-~ 113 (143)
.+..+.++.++ +|++|+||||+++|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|+||+++.. . . .
T Consensus 3 ~~~~~~~~~~~---~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvltg~g~~FsaG~Dl~~~~~~~~~~~ 79 (257)
T COG1024 3 TYETILVERED---GIAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELLSPEDGNA 79 (257)
T ss_pred CCCeeEEEeeC---CEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhcccchhH
Confidence 45678888876 799999999999999999999999999999999999999999999999999999999874 1 1 1
Q ss_pred hhhHHhHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 114 AANVKTGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 114 ~~~~~~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
........+.++.++.++||||||+|||+|
T Consensus 80 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a 109 (257)
T COG1024 80 AENLMQPGQDLLRALADLPKPVIAAVNGYA 109 (257)
T ss_pred HHHHHhHHHHHHHHHHhCCCCEEEEEcceE
Confidence 112224455678999999999999999986
No 15
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=99.91 E-value=5.6e-24 Score=163.64 Aligned_cols=105 Identities=31% Similarity=0.475 Sum_probs=87.4
Q ss_pred CcccEEEEEecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchhhhhh---h
Q psy9280 37 KFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQT---Y 113 (143)
Q Consensus 37 ~~~~v~ve~~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~---~ 113 (143)
.|+.+.+++++ ++|++|+||||++.|+++.+|+++|.+++++++.|+++|+|||+|.|++||+|+|++++.... .
T Consensus 2 ~~~~~~~~~~~--~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~ 79 (262)
T PRK07468 2 MFETIRIAVDA--RGVATLTLNRPEKHNALSARMIAELTTAARRLAADAAVRVVVLTGAGKSFCAGGDLGWMRAQMTADR 79 (262)
T ss_pred CcceEEEEEcC--CcEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCcccCCcCHHHHHhhcccch
Confidence 35678888752 389999999999999999999999999999999999999999999999999999999875321 1
Q ss_pred hhh--HHhHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 114 AAN--VKTGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 114 ~~~--~~~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
... ....+..++.+|..+||||||+|||+|
T Consensus 80 ~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a 111 (262)
T PRK07468 80 ATRIEEARRLAMMLKALNDLPKPLIGRIQGQA 111 (262)
T ss_pred hhHHHHHHHHHHHHHHHHcCCCCEEEEECCEE
Confidence 111 113345667899999999999999986
No 16
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=99.91 E-value=5.8e-24 Score=163.15 Aligned_cols=104 Identities=33% Similarity=0.465 Sum_probs=87.8
Q ss_pred CCcccEEEEEecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchhhhhh--h
Q psy9280 36 VKFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQT--Y 113 (143)
Q Consensus 36 ~~~~~v~ve~~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~--~ 113 (143)
+.|+.+.+++++ +|++|+||||+ .|+++.+|+++|.+++++++.|+++|+|||+|.|++||+|+|++++.... .
T Consensus 1 ~~~~~i~~~~~~---~v~~itlnrp~-~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~ 76 (257)
T PRK06495 1 MMMSQLKLEVSD---HVAVVTLDNPP-VNALSRELRDELIAVFDEISERPDVRVVVLTGAGKVFCAGADLKGRPDVIKGP 76 (257)
T ss_pred CCcceEEEEeeC---CEEEEEECCCc-cccCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcCHHhHhhccCCc
Confidence 357788999876 89999999998 69999999999999999999999999999999999999999999875421 1
Q ss_pred hh--hHHhHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 114 AA--NVKTGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 114 ~~--~~~~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
.. .....+.+++.++..+|||+||+|||+|
T Consensus 77 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a 108 (257)
T PRK06495 77 GDLRAHNRRTRECFHAIRECAKPVIAAVNGPA 108 (257)
T ss_pred hhHHHHHHHHHHHHHHHHhCCCCEEEEECCee
Confidence 11 1113345667889999999999999987
No 17
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=99.91 E-value=7.5e-24 Score=163.98 Aligned_cols=106 Identities=28% Similarity=0.446 Sum_probs=84.8
Q ss_pred cccEEEEEecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchhhhhhh----
Q psy9280 38 FENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQTY---- 113 (143)
Q Consensus 38 ~~~v~ve~~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~---- 113 (143)
|..+.+-....+++|++|+||||+++|+++.+|+++|.+++++++.|+++|+|||+|.|++||+|+|++++.....
T Consensus 4 ~~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~FcaG~Dl~~~~~~~~~~~~ 83 (275)
T PLN02664 4 YKTLEIIQKSPNSSVFHLNLNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIILSGAGDHFCSGIDLKTLNSISEQSSS 83 (275)
T ss_pred ccceEEEEecCCCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCceeeCcChHHhhhccccccc
Confidence 4444433322345999999999999999999999999999999999999999999999999999999998754210
Q ss_pred ------hhhH---HhHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 114 ------AANV---KTGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 114 ------~~~~---~~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
.... ...+.+++.+|..+||||||+|||+|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a 122 (275)
T PLN02664 84 GDRGRSGERLRRKIKFLQDAITAIEQCRKPVIAAIHGAC 122 (275)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCcc
Confidence 0111 12344567889999999999999997
No 18
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=99.91 E-value=6.1e-24 Score=162.30 Aligned_cols=99 Identities=26% Similarity=0.437 Sum_probs=85.0
Q ss_pred EEEEEecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchhhhhhhhhhHHhH
Q psy9280 41 ILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQTYAANVKTG 120 (143)
Q Consensus 41 v~ve~~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~ 120 (143)
+.+++++ +|++|+||||++.|+++.+|+++|.+++++++.|+++|+|||+|.|++||+|+|++++..... ......
T Consensus 2 i~~~~~~---~v~~itlnrp~~~Nal~~~~~~~l~~a~~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~-~~~~~~ 77 (248)
T PRK06072 2 IKVESRE---GYAIVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGADLSEFAPDFA-IDLRET 77 (248)
T ss_pred eEEEEEC---CEEEEEECCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhhhH-HHHHHH
Confidence 4567766 999999999999999999999999999999999999999999999999999999998754221 112234
Q ss_pred HHHHHHHHhcCCCcEEEEEecCC
Q psy9280 121 LLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 121 ~~~~~~~l~~~~kP~IAav~G~a 143 (143)
+..++..+..+||||||+|||+|
T Consensus 78 ~~~~~~~l~~~~kPvIaav~G~a 100 (248)
T PRK06072 78 FYPIIREIRFSDKIYISAINGVT 100 (248)
T ss_pred HHHHHHHHHhCCCCEEEEECCee
Confidence 56677889999999999999987
No 19
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=99.91 E-value=4.6e-24 Score=163.17 Aligned_cols=105 Identities=30% Similarity=0.576 Sum_probs=87.4
Q ss_pred ccEEEEEecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchhhhhhh-hhhH
Q psy9280 39 ENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQTY-AANV 117 (143)
Q Consensus 39 ~~v~ve~~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~-~~~~ 117 (143)
+.+.+++++..++|++|+||||++.|+++.+|+++|.+++++++.|+++|+|||+|.|++||+|+|++++..... ....
T Consensus 3 ~~i~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~ 82 (251)
T PRK06023 3 DHILVERPGAHPGVQVIRFNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLAAAMGGTSF 82 (251)
T ss_pred ceEEEEeecCcCcEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcCHHHHhhccccchhh
Confidence 357888765223599999999999999999999999999999999999999999999999999999998754221 1112
Q ss_pred HhHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 118 KTGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 118 ~~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
...+.+++.+|..+||||||+|||+|
T Consensus 83 ~~~~~~~~~~l~~~~kPvIAav~G~a 108 (251)
T PRK06023 83 GSEILDFLIALAEAEKPIVSGVDGLA 108 (251)
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCce
Confidence 23455677899999999999999986
No 20
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=99.91 E-value=6.2e-24 Score=163.88 Aligned_cols=106 Identities=26% Similarity=0.375 Sum_probs=88.3
Q ss_pred CCcccEEEEEecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchhhhhhhh-
Q psy9280 36 VKFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQTYA- 114 (143)
Q Consensus 36 ~~~~~v~ve~~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~- 114 (143)
..|+.+.+++++ ++|++|+||||++.|+++.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++......
T Consensus 8 ~~~~~i~~~~~~--~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~ 85 (268)
T PRK07327 8 ADYPALRFDRPP--PGVLEIVLNGPGALNAADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAGGDLALVEEMADDF 85 (268)
T ss_pred CCCCeEEEEecC--CCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhhhCCCceEEEEECCCCCcccccCHHHHhhccCcH
Confidence 447789998742 28999999999999999999999999999999999999999999999999999999987542111
Q ss_pred ---hhHHhHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 115 ---ANVKTGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 115 ---~~~~~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
......+..++..+..+||||||+|||+|
T Consensus 86 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a 117 (268)
T PRK07327 86 EVRARVWREARDLVYNVINCDKPIVSAIHGPA 117 (268)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCEEEEEcCee
Confidence 11113345667889999999999999987
No 21
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=99.91 E-value=4e-24 Score=167.47 Aligned_cols=105 Identities=27% Similarity=0.452 Sum_probs=88.8
Q ss_pred CCcccEEEEEecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchhhhhhhh-
Q psy9280 36 VKFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQTYA- 114 (143)
Q Consensus 36 ~~~~~v~ve~~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~- 114 (143)
++|+.+.++.++ +|++|+||||++.|+++.+|+.+|.+++++++.|+++|+|||+|.|++||+|+|++++......
T Consensus 7 ~~~~~v~~e~~~---~V~~Itlnrp~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~G~G~~FcaG~Dl~~~~~~~~~~ 83 (302)
T PRK08272 7 DNLKTMTYEVTG---RIARITLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGAGKGFCAGYDLSAYAEGSSSG 83 (302)
T ss_pred CCCCeEEEEeEC---CEEEEEecCccccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCcCHHHHhhccccc
Confidence 446789999886 9999999999999999999999999999999999999999999999999999999987542110
Q ss_pred ---------------------h-----hHHhHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 115 ---------------------A-----NVKTGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 115 ---------------------~-----~~~~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
. .....+.+.+.+|..+|||+||+|||+|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a 138 (302)
T PRK08272 84 GGGGAYPGKRQAVNHLPDDPWDPMIDYQMMSRFVRGFMSLWHAHKPTVAKVHGYC 138 (302)
T ss_pred ccccccccccccccccccccccchhhHHHHHHHHHHHHHHHhCCCCEEEEEccEe
Confidence 0 0012344567889999999999999987
No 22
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=99.91 E-value=6.6e-24 Score=164.36 Aligned_cols=105 Identities=30% Similarity=0.411 Sum_probs=86.6
Q ss_pred CCcccEEEEE-ecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchhhhhh--
Q psy9280 36 VKFENILVDK-VGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQT-- 112 (143)
Q Consensus 36 ~~~~~v~ve~-~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~-- 112 (143)
++++.+.++. ++ +|++|+||||+++|+++.+|+++|.+++++++.|+++|+|||+|.|++||+|+|++++....
T Consensus 6 ~~~~~v~~~~~~~---~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~ 82 (276)
T PRK05864 6 STMSLVLVDHPRP---EIALITLNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRGFSSGADHKSAGVVPHV 82 (276)
T ss_pred CCCCceEEeeecC---CEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcchhhhhccccc
Confidence 3456688887 44 89999999999999999999999999999999999999999999999999999999874311
Q ss_pred ----hhhh---HHhHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 113 ----YAAN---VKTGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 113 ----~~~~---~~~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
.... ....+.+.+.++..+||||||+|||+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a 120 (276)
T PRK05864 83 EGLTRPTYALRSMELLDDVILALRRLHQPVIAAVNGPA 120 (276)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEe
Confidence 0010 112345567888999999999999987
No 23
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=99.91 E-value=5.4e-24 Score=166.54 Aligned_cols=105 Identities=30% Similarity=0.529 Sum_probs=85.0
Q ss_pred CCcccEEEEEecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcch-hhh----
Q psy9280 36 VKFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKE-MLN---- 110 (143)
Q Consensus 36 ~~~~~v~ve~~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~-~~~---- 110 (143)
+.++.+.+++++ +|++|+||||+++|+|+.+|+++|.+++++++.|+++|+|||||.|++||+|+||++ +..
T Consensus 2 ~~~~~v~~~~~~---~Va~ItLnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvvVLtG~G~~FcaG~Dl~~~~~~~~~~ 78 (298)
T PRK12478 2 PDFQTLLYTTAG---PVATITLNRPEQLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAGRAFSGGYDFGGGFQHWGEA 78 (298)
T ss_pred CCceEEEEeccC---CEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCccccccccchh
Confidence 456788888876 999999999999999999999999999999999999999999999999999999986 211
Q ss_pred hh-h-----hhhH---H-h--HHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 111 QT-Y-----AANV---K-T--GLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 111 ~~-~-----~~~~---~-~--~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
.. . ...+ . . .....+.++..+|||+||+|||+|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a 123 (298)
T PRK12478 79 MMTDGRWDPGKDFAMVTARETGPTQKFMAIWRASKPVIAQVHGWC 123 (298)
T ss_pred cccccccCchhhhhhhhhhhcchHHHHHHHHhCCCCEEEEEccEE
Confidence 00 0 0000 0 0 112356678999999999999987
No 24
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=99.91 E-value=6.6e-24 Score=165.34 Aligned_cols=105 Identities=28% Similarity=0.378 Sum_probs=87.8
Q ss_pred CCcccEEEEEecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchhhhhhh--
Q psy9280 36 VKFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQTY-- 113 (143)
Q Consensus 36 ~~~~~v~ve~~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~-- 113 (143)
|+++.+.++.++ +|++|+||||+++|+++.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++.....
T Consensus 1 ~~~~~v~~~~~~---~Va~ItlnrP~~~Nal~~~~~~eL~~~l~~~~~d~~vrvvVltg~G~~FcaG~Dl~~~~~~~~~~ 77 (288)
T PRK08290 1 MEYEYVRYEVAG---RIARITLNRPEARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAGKHFSAGHDLGSGTPGRDRD 77 (288)
T ss_pred CCCceEEEEeeC---CEEEEEecCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCccccCCCccccccccccc
Confidence 467789999876 999999999999999999999999999999999999999999999999999999998632110
Q ss_pred -------------------hhhH---HhHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 114 -------------------AANV---KTGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 114 -------------------~~~~---~~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
.... ...+.+++.++.++|||+||+|||+|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAaVnG~a 129 (288)
T PRK08290 78 PGPDQHPTLWWDGATKPGVEQRYAREWEVYLGMCRRWRDLPKPTIAQVQGAC 129 (288)
T ss_pred cccccccccccccccccchhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEe
Confidence 0001 12344566788999999999999987
No 25
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=99.91 E-value=8.1e-24 Score=165.35 Aligned_cols=104 Identities=37% Similarity=0.470 Sum_probs=87.1
Q ss_pred CcccEEEEEecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchhhhh---h-
Q psy9280 37 KFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQ---T- 112 (143)
Q Consensus 37 ~~~~v~ve~~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~---~- 112 (143)
.|+.+.+++++ +|++|+||||++.|+++.+|+.+|.++|++++.|+++|+|||+|.|++||+|+|++++... .
T Consensus 2 ~~~~v~~~~~~---~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~ 78 (296)
T PRK08260 2 TYETIRYDVAD---GIATITLNRPDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGAGRAFCAGADLSAGGNTFDLDA 78 (296)
T ss_pred CcceEEEeeeC---CEEEEEeCCCcccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCCeecCcChHHhhhcccccc
Confidence 46778899876 9999999999999999999999999999999999999999999999999999999987521 0
Q ss_pred -------------h--hhhHHhHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 113 -------------Y--AANVKTGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 113 -------------~--~~~~~~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
. ...+...+..++.++..+||||||+|||+|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAav~G~a 124 (296)
T PRK08260 79 PRTPVEADEEDRADPSDDGVRDGGGRVTLRIFDSLKPVIAAVNGPA 124 (296)
T ss_pred cccccccccccccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCee
Confidence 0 001112234567889999999999999987
No 26
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=99.91 E-value=5.8e-24 Score=163.14 Aligned_cols=103 Identities=29% Similarity=0.416 Sum_probs=86.3
Q ss_pred ccEEEEEecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCC-CCccCCCCcchhhhhhhhhh-
Q psy9280 39 ENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNE-KAFAAGADIKEMLNQTYAAN- 116 (143)
Q Consensus 39 ~~v~ve~~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g-~~FsaG~Dl~~~~~~~~~~~- 116 (143)
.++.+++.. ++|++|+||||++.|+++.+|+++|.+++++++.|+++|+|||||.| ++||+|+|++++........
T Consensus 6 ~~~~~~~~~--~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~ 83 (256)
T PRK06143 6 AHAGVTRDD--RGVATLTIRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQASAE 83 (256)
T ss_pred ccceeeecC--CCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhcChhhHH
Confidence 457777542 38999999999999999999999999999999999999999999988 79999999998764322111
Q ss_pred -HHhHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 117 -VKTGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 117 -~~~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
+...+..++.++..+||||||+|||+|
T Consensus 84 ~~~~~~~~~~~~l~~~~kPvIAav~G~a 111 (256)
T PRK06143 84 AFISRLRDLCDAVRHFPVPVIARIPGWC 111 (256)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEECCEE
Confidence 223456677899999999999999986
No 27
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=99.91 E-value=8.6e-24 Score=162.64 Aligned_cols=104 Identities=27% Similarity=0.422 Sum_probs=88.0
Q ss_pred CcccEEEEEecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCC-CCccCCCCcchhhhhhhhh
Q psy9280 37 KFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNE-KAFAAGADIKEMLNQTYAA 115 (143)
Q Consensus 37 ~~~~v~ve~~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g-~~FsaG~Dl~~~~~~~~~~ 115 (143)
..+.+.+++++ +|++|+||||+++|+++.+|+++|.+++++++.|+++|+|||+|.| ++||+|+|++++.......
T Consensus 6 ~~~~v~~~~~~---~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~~~~ 82 (262)
T PRK06144 6 STDELLLEVRG---GIARITFNRPAARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFSTAE 82 (262)
T ss_pred CCCceEEEeeC---CEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhccchh
Confidence 35678889877 9999999999999999999999999999999999999999999987 7999999999875432111
Q ss_pred ---hHHhHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 116 ---NVKTGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 116 ---~~~~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
.+...+.+++.++..+||||||+|||+|
T Consensus 83 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a 113 (262)
T PRK06144 83 DAVAYERRIDRVLGALEQLRVPTIAAIAGAC 113 (262)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEECCee
Confidence 1123345667889999999999999987
No 28
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=99.91 E-value=6.4e-24 Score=162.69 Aligned_cols=103 Identities=27% Similarity=0.406 Sum_probs=87.4
Q ss_pred cccEEEEEecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchhhhhhhh---
Q psy9280 38 FENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQTYA--- 114 (143)
Q Consensus 38 ~~~v~ve~~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~--- 114 (143)
++++.+++++ +|++|+||||++.|++|.+|+.+|.+++++++.|+++|+|||+|.|++||+|+|++++......
T Consensus 1 ~~~i~~~~~~---~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~ 77 (255)
T PRK07260 1 FEHIIYEVED---DLATLTLNRPEVSNGFNIPMCQEILEALRLAEEDPSVRFLLINANGKVFSVGGDLVEMKRAVDEDDV 77 (255)
T ss_pred CCceEEEEEC---CEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccccCHHHHHhhccccch
Confidence 4568888876 9999999999999999999999999999999999999999999999999999999988642111
Q ss_pred hh---HHhHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 115 AN---VKTGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 115 ~~---~~~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
.. ....+.+++.++..+||||||+|||+|
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a 109 (255)
T PRK07260 78 QSLVKIAELVNEISFAIKQLPKPVIMCVDGAV 109 (255)
T ss_pred hhHHHHHHHHHHHHHHHHcCCCCEEEEecCee
Confidence 11 112345667889999999999999987
No 29
>PRK08139 enoyl-CoA hydratase; Validated
Probab=99.91 E-value=7.3e-24 Score=163.36 Aligned_cols=105 Identities=33% Similarity=0.447 Sum_probs=88.6
Q ss_pred CCcccEEEEEecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchhhhhhhhh
Q psy9280 36 VKFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQTYAA 115 (143)
Q Consensus 36 ~~~~~v~ve~~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~ 115 (143)
+..+.+.++.++ +|++|+||||+++|+++.+|+++|.+++++++.|+++|+|||+|.|++||+|+|++++.......
T Consensus 8 ~~~~~~~~~~~~---~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~ 84 (266)
T PRK08139 8 TEAPLLLREDRD---GVATLTLNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAAGKAFCAGHDLKEMRAARGLA 84 (266)
T ss_pred ccCCceEEEeeC---CEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEecCCCcceeccCHHHHhcccchh
Confidence 345678888876 99999999999999999999999999999999999999999999999999999999875422111
Q ss_pred h---HHhHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 116 N---VKTGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 116 ~---~~~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
. ....+.+++.++..+||||||+|||+|
T Consensus 85 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a 115 (266)
T PRK08139 85 YFRALFARCSRVMQAIVALPQPVIARVHGIA 115 (266)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEECcee
Confidence 1 113345667889999999999999997
No 30
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=99.91 E-value=9.1e-24 Score=162.19 Aligned_cols=101 Identities=38% Similarity=0.526 Sum_probs=85.5
Q ss_pred cEEEEEecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCC-CCccCCCCcchhhhhh---hh-
Q psy9280 40 NILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNE-KAFAAGADIKEMLNQT---YA- 114 (143)
Q Consensus 40 ~v~ve~~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g-~~FsaG~Dl~~~~~~~---~~- 114 (143)
.+.++.++ +|++|+||||+++|+++.+|+++|.+++++++.|+++|+|||||.| ++||+|+|++++.... ..
T Consensus 4 ~i~~~~~~---~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~ 80 (260)
T PRK05980 4 TVLIEIRD---GIALLTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGADV 80 (260)
T ss_pred eEEEEEEC---CEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccchh
Confidence 58888876 9999999999999999999999999999999999999999999988 7999999999875421 11
Q ss_pred --hhHHhHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 115 --ANVKTGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 115 --~~~~~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
..+...+.+++.++..+|||+||+|||+|
T Consensus 81 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a 111 (260)
T PRK05980 81 ALRDFVRRGQAMTARLEAFPKPVIAAVNGLA 111 (260)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCEEEEEcCEE
Confidence 11113345567889999999999999987
No 31
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=99.91 E-value=9.3e-24 Score=161.90 Aligned_cols=100 Identities=31% Similarity=0.463 Sum_probs=84.9
Q ss_pred ccEEEEEecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchhhhhhhhh--h
Q psy9280 39 ENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQTYAA--N 116 (143)
Q Consensus 39 ~~v~ve~~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~--~ 116 (143)
+.+.+++++ +|++|+||||++.|+++.+|+++|.+++++++ +++|+|||||.|++||+|+|++++....... .
T Consensus 2 ~~v~~~~~~---~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~--~~vr~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~ 76 (255)
T PRK08150 2 SLVSYELDG---GVATIGLNRPAKRNALNDGLIAALRAAFARLP--EGVRAVVLHGEGDHFCAGLDLSELRERDAGEGMH 76 (255)
T ss_pred ceEEEEeeC---CEEEEEEcCCccccCCCHHHHHHHHHHHHHhh--cCCeEEEEECCCCceecCcCHHHHhhccchhHHH
Confidence 567888876 89999999999999999999999999999997 7799999999999999999999986432211 1
Q ss_pred HHhHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 117 VKTGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 117 ~~~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
....+...+.+|..+||||||+|||+|
T Consensus 77 ~~~~~~~~~~~l~~~~kPvIaav~G~a 103 (255)
T PRK08150 77 HSRRWHRVFDKIQYGRVPVIAALHGAV 103 (255)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCEE
Confidence 123455677889999999999999987
No 32
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=99.91 E-value=1.3e-23 Score=160.57 Aligned_cols=104 Identities=23% Similarity=0.276 Sum_probs=88.5
Q ss_pred CCcccEEEEEecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchhhhhhhhh
Q psy9280 36 VKFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQTYAA 115 (143)
Q Consensus 36 ~~~~~v~ve~~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~ 115 (143)
+.++.+.+++++ +|++|+||+|++.|+++.+|+++|.+++++++.|+++|+|||+|.|++||+|+|++++.......
T Consensus 2 ~~~~~~~~~~~~---~v~~i~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~ 78 (249)
T PRK07110 2 MMKVVELREVEE---GIAQVTMQDRVNKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGYPNYFATGGTQEGLLSLQTGK 78 (249)
T ss_pred CCCceEEEEeeC---CEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCcChHHHhhccchh
Confidence 456778888876 89999999999999999999999999999999999999999999999999999999876433211
Q ss_pred hHHhHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 116 NVKTGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 116 ~~~~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
..... ..++.++..+|||+||+|||+|
T Consensus 79 ~~~~~-~~~~~~l~~~~kPvIaav~G~a 105 (249)
T PRK07110 79 GTFTE-ANLYSLALNCPIPVIAAMQGHA 105 (249)
T ss_pred hhHhh-HHHHHHHHcCCCCEEEEecCce
Confidence 11111 4677899999999999999997
No 33
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=99.91 E-value=1.1e-23 Score=161.73 Aligned_cols=104 Identities=33% Similarity=0.423 Sum_probs=84.9
Q ss_pred CCcccEEEEEecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCC-CCccCCCCcchhhhhhhh
Q psy9280 36 VKFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNE-KAFAAGADIKEMLNQTYA 114 (143)
Q Consensus 36 ~~~~~v~ve~~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g-~~FsaG~Dl~~~~~~~~~ 114 (143)
|.|+.+.+++++ +|++|+||||++.|+++.+|+++|.+++++++.|+++|+|||+|.| ++||+|+|++++......
T Consensus 1 ~~~~~v~~~~~~---~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~ 77 (259)
T PRK06494 1 MALPFSTVERKG---HVTIVTLNRPEVMNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGKR 77 (259)
T ss_pred CCCceeEEEeEC---CEEEEEEcCccccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcCcc
Confidence 456788999876 9999999999999999999999999999999999999999999987 799999999987543221
Q ss_pred hhHHhHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 115 ANVKTGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 115 ~~~~~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
......+.. +..+..+||||||+|||+|
T Consensus 78 ~~~~~~~~~-~~~~~~~~kPvIaav~G~a 105 (259)
T PRK06494 78 GWPESGFGG-LTSRFDLDKPIIAAVNGVA 105 (259)
T ss_pred hhhhHHHHH-HHHHhcCCCCEEEEECCEE
Confidence 111122222 3345689999999999987
No 34
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=99.91 E-value=1.3e-23 Score=161.42 Aligned_cols=103 Identities=28% Similarity=0.392 Sum_probs=86.4
Q ss_pred cccEEEEEecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchhhhhhhhh--
Q psy9280 38 FENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQTYAA-- 115 (143)
Q Consensus 38 ~~~v~ve~~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~-- 115 (143)
++.+.+++++ +|++|+||||++.|+++.+|+++|.+++++++.|+++|+|||+|.|++||+|+|++++.......
T Consensus 2 ~~~v~~~~~~---~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~ 78 (262)
T PRK07509 2 MDRVSVTIED---GIADVRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGEGGAFCAGLDVKSVASSPGNAVK 78 (262)
T ss_pred CceEEEEeeC---CEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCcCCCcCHHHHhcccchhhh
Confidence 5678899876 99999999999999999999999999999999999999999999999999999999876432111
Q ss_pred hHH-------hHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 116 NVK-------TGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 116 ~~~-------~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
... ..+.+.+..+..+||||||+|||+|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~kpvIaav~G~a 113 (262)
T PRK07509 79 LLFKRLPGNANLAQRVSLGWRRLPVPVIAALEGVC 113 (262)
T ss_pred hHhhhhHHHHHHHHHHHHHHHhCCCCEEEEECCee
Confidence 100 1223455678899999999999987
No 35
>PRK05869 enoyl-CoA hydratase; Validated
Probab=99.91 E-value=8.8e-24 Score=159.13 Aligned_cols=105 Identities=28% Similarity=0.413 Sum_probs=86.3
Q ss_pred cccEEEEEe--cCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchhhhhhhhh
Q psy9280 38 FENILVDKV--GKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQTYAA 115 (143)
Q Consensus 38 ~~~v~ve~~--~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~ 115 (143)
++.+.++.. ..+++|++|+||||+ .|+++.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++.......
T Consensus 2 ~~~~~~~~~~~~~~~~i~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~ 80 (222)
T PRK05869 2 NEFVNVVVSDGSQDAGLATLLLSRPP-TNALTRQVYREIVAAANELGRRDDVAAVILYGGHEIFSAGDDMPELRTLSAQE 80 (222)
T ss_pred ccchhhhcccCcccCCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcCcCcCHHHHhccChhh
Confidence 455666664 123589999999998 59999999999999999999999999999999999999999999976432221
Q ss_pred h--HHhHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 116 N--VKTGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 116 ~--~~~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
. ....+.+++.++.++||||||+|||+|
T Consensus 81 ~~~~~~~~~~~~~~i~~~~kPvIAav~G~a 110 (222)
T PRK05869 81 ADTAARVRQQAVDAVAAIPKPTVAAITGYA 110 (222)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEcCEe
Confidence 1 123456678899999999999999987
No 36
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=99.91 E-value=1.6e-23 Score=160.86 Aligned_cols=104 Identities=35% Similarity=0.509 Sum_probs=87.7
Q ss_pred CCcccEEEEEecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchhhhhhhhh
Q psy9280 36 VKFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQTYAA 115 (143)
Q Consensus 36 ~~~~~v~ve~~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~ 115 (143)
++++.+.+++++ +|++|+||||++.|+++.+|+++|.++++++ .|+++|+||++|.|++||+|+|++++.......
T Consensus 3 ~~~~~v~~~~~~---~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~-~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~ 78 (260)
T PRK07659 3 SKMESVVVKYEG---RVATIMLNRPEALNALDEPMLKELLQALKEV-AESSAHIVVLRGNGRGFSAGGDIKMMLSSNDES 78 (260)
T ss_pred CCCceEEEEeeC---CEEEEEeCCcccccCCCHHHHHHHHHHHHHh-cCCCeeEEEEECCCCCcccccCHHHHhhccCch
Confidence 345678999887 9999999999999999999999999999999 588899999999999999999999976432111
Q ss_pred ---hHHhHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 116 ---NVKTGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 116 ---~~~~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
.....+.+++.++..+||||||+|||+|
T Consensus 79 ~~~~~~~~~~~~~~~l~~~~~pvIaav~G~a 109 (260)
T PRK07659 79 KFDGVMNTISEIVVTLYTMPKLTISAIHGPA 109 (260)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCEEEEecCce
Confidence 1123455667889999999999999987
No 37
>KOG1681|consensus
Probab=99.91 E-value=1.6e-24 Score=160.93 Aligned_cols=115 Identities=30% Similarity=0.444 Sum_probs=96.2
Q ss_pred hhhcccCCCcccEEEEEecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchh
Q psy9280 29 IIKYMSTVKFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEM 108 (143)
Q Consensus 29 ~r~~~~~~~~~~v~ve~~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~ 108 (143)
++..++...|+.+.+.++...+.|..+.||||.|+|+++..|+.|+.++++.+..||++|+|||+|.|++||+|.|+..+
T Consensus 9 s~~~~~~~s~ksl~v~vk~~~~~V~hv~lnRPsk~Nal~~~~w~E~~~cf~~l~~dpdcr~iilsg~GKhFcaGIDl~~~ 88 (292)
T KOG1681|consen 9 SLGESPDHSYKSLEVSVKSAQPFVYHVQLNRPSKLNALNKVFWREFKECFDSLDRDPDCRAIILSGAGKHFCAGIDLNDM 88 (292)
T ss_pred ccccCCccccceeeeeecCCCCeEEEEEecCcchhhhhhHHHHHHHHHHHHhhccCCCceEEEEecCCcceecccCcchh
Confidence 34444667788888887766778999999999999999999999999999999999999999999999999999998776
Q ss_pred hhhhh-------hhh-------HHhHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 109 LNQTY-------AAN-------VKTGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 109 ~~~~~-------~~~-------~~~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
..... ... ....++..+..|++||||+|++|||+|
T Consensus 89 ~~~~~~~~~~dd~aR~g~~lrr~Ik~~Q~~~t~ie~CpKPVIaavHg~C 137 (292)
T KOG1681|consen 89 ASDRILQPEGDDVARKGRSLRRIIKRYQDTFTAIERCPKPVIAAVHGAC 137 (292)
T ss_pred hhhhccccccchHhhhhHHHHHHHHHHHHHHHHHHhCChhHHHHHHhhh
Confidence 43210 000 114567778999999999999999997
No 38
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=99.91 E-value=1.4e-23 Score=161.22 Aligned_cols=103 Identities=33% Similarity=0.517 Sum_probs=84.7
Q ss_pred cccEEEEE-ecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCC-CCccCCCCcchhhhhhh--
Q psy9280 38 FENILVDK-VGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNE-KAFAAGADIKEMLNQTY-- 113 (143)
Q Consensus 38 ~~~v~ve~-~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g-~~FsaG~Dl~~~~~~~~-- 113 (143)
|+.+.+++ ++ +|++|+||||+++|+++.+|+++|.+++++++.|+++|+|||||.| ++||+|+|++++.....
T Consensus 1 ~~~i~~~~~~~---~v~~itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~ 77 (259)
T TIGR01929 1 FTDIRYEKSTD---GIAKITINRPQVRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYID 77 (259)
T ss_pred CceEEEEEcCC---CEEEEEecCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhccccc
Confidence 34578887 55 8999999999999999999999999999999999999999999988 79999999998643211
Q ss_pred hh-hHHhHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 114 AA-NVKTGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 114 ~~-~~~~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
.. .....+..++..+..+|||+||+|||+|
T Consensus 78 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a 108 (259)
T TIGR01929 78 DSGVHRLNVLDVQRQIRTCPKPVIAMVNGYA 108 (259)
T ss_pred hhhHHHHHHHHHHHHHHhCCCCEEEEEcCEE
Confidence 11 1111234567789999999999999987
No 39
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=99.91 E-value=2.4e-23 Score=159.91 Aligned_cols=104 Identities=28% Similarity=0.331 Sum_probs=87.8
Q ss_pred CcccEEEEEecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchhhhh--hhh
Q psy9280 37 KFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQ--TYA 114 (143)
Q Consensus 37 ~~~~v~ve~~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~--~~~ 114 (143)
.+..+.+++++ +|++|+||||++.|+++.+|+.+|.+++++++.|+++|+|||+|.|++||+|+|++++... ...
T Consensus 4 ~~~~i~~~~~~---~v~~i~lnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~ 80 (260)
T PRK07827 4 VDTLVRYAVDG---GVATLTLDSPHNRNALSARLVAQLHDGLRAAAADPAVRAVVLTHTGGTFCAGADLSEAGGGGGDPY 80 (260)
T ss_pred CCcceEEEeeC---CEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCcChHHHhhcccCch
Confidence 34567888776 9999999999999999999999999999999999999999999999999999999987542 111
Q ss_pred h---hHHhHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 115 A---NVKTGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 115 ~---~~~~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
. .+...+.+++.++..+||||||+|||+|
T Consensus 81 ~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a 112 (260)
T PRK07827 81 DAAVARAREMTALLRAIVELPKPVIAAIDGHV 112 (260)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCCEEEEEcCee
Confidence 1 1123455677899999999999999987
No 40
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=99.91 E-value=1.4e-23 Score=161.41 Aligned_cols=104 Identities=30% Similarity=0.428 Sum_probs=85.1
Q ss_pred CcccEEEEEecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchhhhhhhhhh
Q psy9280 37 KFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQTYAAN 116 (143)
Q Consensus 37 ~~~~v~ve~~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~ 116 (143)
.++.+.+++++ +|++|+||||+++|+++.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++........
T Consensus 3 ~~~~i~~~~~~---~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~ 79 (263)
T PRK07799 3 GGPHALVEQRG---HTLIVTMNRPEARNALSTEMLRIMVDAWDRVDNDPDIRSCILTGAGGAFCAGMDLKAATKKPPGDS 79 (263)
T ss_pred CCceEEEEEEC---CEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccccCHHHHhhccccch
Confidence 35678899887 999999999999999999999999999999999999999999999999999999999764321111
Q ss_pred HH-----hHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 117 VK-----TGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 117 ~~-----~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
+. ......+.++..+||||||+|||+|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~kpvIaav~G~a 111 (263)
T PRK07799 80 FKDGSYDPSRIDALLKGRRLTKPLIAAVEGPA 111 (263)
T ss_pred hhhhhhhhhHHHHHHHHhcCCCCEEEEECCeE
Confidence 10 0111223457899999999999986
No 41
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=99.90 E-value=2.2e-23 Score=161.51 Aligned_cols=101 Identities=25% Similarity=0.370 Sum_probs=86.1
Q ss_pred cEEEEEecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchhhhh----hhhh
Q psy9280 40 NILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQ----TYAA 115 (143)
Q Consensus 40 ~v~ve~~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~----~~~~ 115 (143)
.+.+++++ +|++|+||||++.|+++.+|+.+|.+++++++.|+++|+|||+|.|++||+|+|++++... ....
T Consensus 18 ~~~~~~~~---~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~ 94 (277)
T PRK08258 18 HFLWEVDD---GVATITLNRPERKNPLTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMDMPE 94 (277)
T ss_pred ceEEEEEC---CEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCcccccCHHHHhccccccChhH
Confidence 68888876 9999999999999999999999999999999999999999999999999999999987431 1111
Q ss_pred --hHHhHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 116 --NVKTGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 116 --~~~~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
.+...+.+++.+|..+||||||+|||+|
T Consensus 95 ~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a 124 (277)
T PRK08258 95 LLAFTRMTGDLVKAMRACPQPIIAAVDGVC 124 (277)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCee
Confidence 1113345677899999999999999987
No 42
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=99.90 E-value=1.9e-23 Score=160.85 Aligned_cols=101 Identities=35% Similarity=0.511 Sum_probs=85.3
Q ss_pred cEEEEEecCCCcEEEEEEcCCCCCCCCCH-HHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchhhhhhh-----
Q psy9280 40 NILVDKVGKNKNVGLVQLNRPKSLNALCD-ALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQTY----- 113 (143)
Q Consensus 40 ~v~ve~~~~~~~V~~I~ln~p~~~Nal~~-~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~----- 113 (143)
.+.+++++ +|++|+||||++.|+++. +|+++|.+++++++.|+++|+|||+|.|++||+|+|++++.....
T Consensus 4 ~v~~~~~~---~v~~itlnrp~~~Nal~~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 80 (266)
T PRK09245 4 FLLVERDG---HIVTLTMNRPETRNALSDNDAVDALVAACAAINADRSVRAVILTGAGTAFSSGGNVKDMRARVGAFGGS 80 (266)
T ss_pred ceEEEEEC---CEEEEEECCcccccCCChHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCHHHHhhcccccccc
Confidence 58888876 999999999999999995 999999999999999999999999999999999999998754211
Q ss_pred h----hhHHhHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 114 A----ANVKTGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 114 ~----~~~~~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
. ..+...+..++.++..+|||+||+|||+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a 114 (266)
T PRK09245 81 PADIRQGYRHGIQRIPLALYNLEVPVIAAVNGPA 114 (266)
T ss_pred chhHHHHHHHHHHHHHHHHHcCCCCEEEEECCEe
Confidence 0 11112344567889999999999999987
No 43
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=99.90 E-value=2.5e-23 Score=160.63 Aligned_cols=104 Identities=27% Similarity=0.460 Sum_probs=87.3
Q ss_pred CcccEEEEEecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCC-CCccCCCCcchhhhhhh--
Q psy9280 37 KFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNE-KAFAAGADIKEMLNQTY-- 113 (143)
Q Consensus 37 ~~~~v~ve~~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g-~~FsaG~Dl~~~~~~~~-- 113 (143)
..+.+.+++++ +|++|+||||+++|+++.+|+++|.+++++++.|+++|+|||+|.| ++||+|+|++++.....
T Consensus 9 ~~~~v~~~~~~---~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~ 85 (269)
T PRK06127 9 PTGKLLAEKTG---GLGRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESRSDA 85 (269)
T ss_pred CCCceEEEEEC---CEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcccch
Confidence 34568888876 9999999999999999999999999999999999999999999987 79999999998754211
Q ss_pred h--hhHHhHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 114 A--ANVKTGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 114 ~--~~~~~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
. ..+...+..++.++..+||||||+|||+|
T Consensus 86 ~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a 117 (269)
T PRK06127 86 EAVAAYEQAVEAAQAALADYAKPTIACIRGYC 117 (269)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEEEECCEE
Confidence 1 11123344567889999999999999986
No 44
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=99.90 E-value=1.8e-23 Score=160.29 Aligned_cols=102 Identities=34% Similarity=0.474 Sum_probs=88.5
Q ss_pred ccEEEEEecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchhhhhhhh-hhH
Q psy9280 39 ENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQTYA-ANV 117 (143)
Q Consensus 39 ~~v~ve~~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~-~~~ 117 (143)
+.+.+++++ +|++|+||||++.|+++.+|+++|.+++++++.|+++|+|||+|.|++||+|+|++++...... ...
T Consensus 5 ~~i~~~~~~---~v~~i~lnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 81 (259)
T PRK06688 5 TDLLVELED---GVLTITINRPDKKNALTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFPKAPPKPPDE 81 (259)
T ss_pred CceEEEEEC---CEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCccCHHHHhccCcchHHH
Confidence 568888887 9999999999989999999999999999999999999999999999999999999988653222 112
Q ss_pred HhHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 118 KTGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 118 ~~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
...+.+++.++..+|||+||+|||+|
T Consensus 82 ~~~~~~~~~~l~~~~kp~Iaav~G~a 107 (259)
T PRK06688 82 LAPVNRFLRAIAALPKPVVAAVNGPA 107 (259)
T ss_pred HHHHHHHHHHHHcCCCCEEEEECCee
Confidence 24456778899999999999999987
No 45
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=99.90 E-value=1.9e-23 Score=160.10 Aligned_cols=99 Identities=29% Similarity=0.413 Sum_probs=82.4
Q ss_pred EEEEEecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchhhhhhh--hh---
Q psy9280 41 ILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQTY--AA--- 115 (143)
Q Consensus 41 v~ve~~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~--~~--- 115 (143)
+.+++++ +|++|+||||++.|+++.+|+.+|.+++++++.|+ +|+|||||.|++||+|+|++++..... ..
T Consensus 1 ~~~e~~~---~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~-v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~ 76 (256)
T TIGR02280 1 ILSALEA---GVARLTLNRPDKLNSFTAEMHLELREALERVERDD-ARALMLTGAGRGFCAGQDLSERNPTPGGAPDLGR 76 (256)
T ss_pred CeEEEEC---CEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCC-cEEEEEECCCCCcccCcCHHHHhhccccchhHHH
Confidence 3567776 99999999999999999999999999999999998 999999999999999999999764211 11
Q ss_pred hHHhHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 116 NVKTGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 116 ~~~~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
.....+..++.++..+||||||+|||+|
T Consensus 77 ~~~~~~~~~~~~l~~~~kPvIaav~G~a 104 (256)
T TIGR02280 77 TIETFYNPLVRRLRALPLPVVCAVNGVA 104 (256)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEECCee
Confidence 1112234456789999999999999987
No 46
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=99.90 E-value=2.1e-23 Score=160.15 Aligned_cols=101 Identities=28% Similarity=0.448 Sum_probs=85.2
Q ss_pred ccEEEEEecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCC-CCccCCCCcchhhhhhhhh--
Q psy9280 39 ENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNE-KAFAAGADIKEMLNQTYAA-- 115 (143)
Q Consensus 39 ~~v~ve~~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g-~~FsaG~Dl~~~~~~~~~~-- 115 (143)
..+.+++++ +|++|+||||++ |+++.+|+.+|.+++++++.|+++|+|||+|.| ++||+|+|++++.......
T Consensus 3 ~~v~~~~~~---~v~~itlnrp~~-Nal~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~~~~~~~ 78 (258)
T PRK09076 3 IELDLEIDG---HVAILTLNNPPA-NTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGDKAVAR 78 (258)
T ss_pred eEEEEEEEC---CEEEEEECCCCc-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhcChhhHH
Confidence 468888876 999999999985 999999999999999999999999999999987 7899999999875432211
Q ss_pred hHHhHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 116 NVKTGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 116 ~~~~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
.....+...+.++..+||||||+|||+|
T Consensus 79 ~~~~~~~~~~~~l~~~~kPvIAav~G~a 106 (258)
T PRK09076 79 EMARRFGEAFEALSAFRGVSIAAINGYA 106 (258)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEECCEE
Confidence 1223455677889999999999999986
No 47
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=99.90 E-value=2e-23 Score=160.39 Aligned_cols=102 Identities=36% Similarity=0.521 Sum_probs=86.3
Q ss_pred ccEEEEE-ecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCC-CCccCCCCcchhhhhhhhh-
Q psy9280 39 ENILVDK-VGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNE-KAFAAGADIKEMLNQTYAA- 115 (143)
Q Consensus 39 ~~v~ve~-~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g-~~FsaG~Dl~~~~~~~~~~- 115 (143)
+++.+++ ++ +|++|+||||++.|+++.+|+.+|.+++++++.|+++|+|||+|.| ++||+|+|++++.......
T Consensus 3 ~~v~~~~~~~---~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~ 79 (260)
T PRK07657 3 QNISVDYVTP---HVVKITLNRPRAANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGMNEEQV 79 (260)
T ss_pred ceEEEEEccC---CEEEEEEeCCcccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcCChhhH
Confidence 4788886 44 8999999999999999999999999999999999999999999988 5999999999975422211
Q ss_pred -hHHhHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 116 -NVKTGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 116 -~~~~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
.....+..++..+..+||||||+|||+|
T Consensus 80 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a 108 (260)
T PRK07657 80 RHAVSLIRTTMEMVEQLPQPVIAAINGIA 108 (260)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEcCEe
Confidence 1123456677899999999999999987
No 48
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=99.90 E-value=2.3e-23 Score=160.22 Aligned_cols=104 Identities=24% Similarity=0.405 Sum_probs=87.5
Q ss_pred CCcccEEEEEecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcC--CCCccCCCCcchhhhhhh
Q psy9280 36 VKFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGN--EKAFAAGADIKEMLNQTY 113 (143)
Q Consensus 36 ~~~~~v~ve~~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~--g~~FsaG~Dl~~~~~~~~ 113 (143)
|+|+.+.++.++ +|++||||||+++|+++.+|+++|.+++++++.|+ +|+|||||. |++||+|+|++++.....
T Consensus 1 ~~~~~~~~~~~~---~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~-v~~vvltg~~~~~~FcaG~Dl~~~~~~~~ 76 (261)
T PRK11423 1 MSMQYVNVVTIN---KIATITFNNPAKRNALSKVLIDDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSGGR 76 (261)
T ss_pred CCccceEEEeEC---CEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCC-ceEEEEECCCCCCeeECCcCHHHHhhccc
Confidence 467789999887 99999999999999999999999999999999887 999999985 389999999998753221
Q ss_pred -hhhHHhHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 114 -AANVKTGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 114 -~~~~~~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
...+...+.+++.++..+||||||+|||+|
T Consensus 77 ~~~~~~~~~~~l~~~i~~~~kPvIaav~G~a 107 (261)
T PRK11423 77 DPLSYDDPLRQILRMIQKFPKPVIAMVEGSV 107 (261)
T ss_pred cHHHHHHHHHHHHHHHHhCCCCEEEEEecEE
Confidence 111223455677889999999999999987
No 49
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=99.90 E-value=2e-23 Score=161.19 Aligned_cols=106 Identities=33% Similarity=0.527 Sum_probs=87.9
Q ss_pred CCcccEEEEEecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchhhhhhhhh
Q psy9280 36 VKFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQTYAA 115 (143)
Q Consensus 36 ~~~~~v~ve~~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~ 115 (143)
|.|+.+.+++++ ++|++|+||||++.|++|.+|+++|.+++++++.|+++|+|||+|.|++||+|+|++++.......
T Consensus 2 ~~~~~i~~~~~~--~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~ 79 (272)
T PRK06210 2 MAYDAVLYEVAD--SGVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAGRGFCAGADMGELQTIDPSD 79 (272)
T ss_pred CCcceEEEEECC--CCEEEEEeCCcccccCCCHHHHHHHHHHHHHhccCCCeeEEEEECCCCCcccccCHHHHhccCccc
Confidence 567889998752 279999999999999999999999999999999999999999999999999999999875422110
Q ss_pred --------hH-H---hHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 116 --------NV-K---TGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 116 --------~~-~---~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
.+ . ..+++.+.++..+||||||+|||+|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a 119 (272)
T PRK06210 80 GRRDTDVRPFVGNRRPDYQTRYHFLTALRKPVIAAINGAC 119 (272)
T ss_pred ccccccchhhhhhhhhhHHHHHHHHHhCCCCEEEEECCee
Confidence 00 0 1234456789999999999999987
No 50
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=99.90 E-value=1.5e-23 Score=160.63 Aligned_cols=102 Identities=34% Similarity=0.410 Sum_probs=81.6
Q ss_pred ccEEEEEecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchhhhhhhhhhHH
Q psy9280 39 ENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQTYAANVK 118 (143)
Q Consensus 39 ~~v~ve~~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~ 118 (143)
+.+.+++++ +|++|+||||+++|+++.+|+++|.+++++++.|+++|+|||+|.|++||+|+|++++..........
T Consensus 3 ~~i~~~~~~---~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvltg~g~~FcaG~Dl~~~~~~~~~~~~~ 79 (254)
T PRK08259 3 MSVRVERNG---PVTTVILNRPEVRNAVDGPTAAALADAFRAFDADDAASVAVLWGAGGTFCAGADLKAVGTGRGNRLHP 79 (254)
T ss_pred ceEEEEEEC---CEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcChHHHhcccchhhhh
Confidence 458888876 99999999999999999999999999999999999999999999999999999999875432111110
Q ss_pred hHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 119 TGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 119 ~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
......+..+..+|||+||+|||+|
T Consensus 80 ~~~~~~~~~~~~~~kPvIaav~G~a 104 (254)
T PRK08259 80 SGDGPMGPSRMRLSKPVIAAVSGYA 104 (254)
T ss_pred hhcchhhhHHhcCCCCEEEEECCEE
Confidence 1011112233479999999999986
No 51
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=99.90 E-value=2.5e-23 Score=159.75 Aligned_cols=101 Identities=31% Similarity=0.444 Sum_probs=86.5
Q ss_pred cEEEEEecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchhhhhh--h-hh-
Q psy9280 40 NILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQT--Y-AA- 115 (143)
Q Consensus 40 ~v~ve~~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~--~-~~- 115 (143)
++.+++++ +|++|+||||++.|+++.+|+++|.+++++++.|+++|+|||+|.|++||+|+|++++.... . ..
T Consensus 4 ~~~~~~~~---~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~ 80 (260)
T PRK07511 4 ELLSRREG---STLVLTLSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTGAGGFFCAGGNLNRLLENRAKPPSVQ 80 (260)
T ss_pred eeEEEeEC---CEEEEEECCcccccCCCHHHHHHHHHHHHHhccCCCeEEEEEECCCCCcccCcCHHHHhhcccccchhH
Confidence 47788876 99999999999999999999999999999999999999999999999999999999875421 1 11
Q ss_pred -hHHhHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 116 -NVKTGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 116 -~~~~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
.....+.+++.++..+|||+||+|||+|
T Consensus 81 ~~~~~~~~~~~~~l~~~~kpvIAav~G~a 109 (260)
T PRK07511 81 AASIDGLHDWIRAIRAFPKPVIAAVEGAA 109 (260)
T ss_pred HHHHHHHHHHHHHHHcCCCCEEEEECCee
Confidence 1124456677899999999999999987
No 52
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=99.90 E-value=2.4e-23 Score=159.59 Aligned_cols=101 Identities=33% Similarity=0.496 Sum_probs=85.6
Q ss_pred ccEEEEEecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchhhhhhhh-h--
Q psy9280 39 ENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQTYA-A-- 115 (143)
Q Consensus 39 ~~v~ve~~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~-~-- 115 (143)
+.+.+++++ +|++|+||||++ |+++.+|+++|.+++++++.|+++|+|||+|.|++||+|+|++++...... .
T Consensus 2 ~~i~~~~~~---~v~~itl~rp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 77 (257)
T PRK07658 2 KFLSVRVED---HVAVITLNHPPA-NALSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSVTEAEQAT 77 (257)
T ss_pred ceEEEEeeC---CEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhccCchhhHH
Confidence 467888876 999999999985 999999999999999999999999999999999999999999987543221 1
Q ss_pred hHHhHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 116 NVKTGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 116 ~~~~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
........++.+|..+|||+||+|||+|
T Consensus 78 ~~~~~~~~~~~~l~~~~kpvIAav~G~a 105 (257)
T PRK07658 78 ELAQLGQVTFERVEKFSKPVIAAIHGAA 105 (257)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEcCee
Confidence 1123445677899999999999999986
No 53
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=99.90 E-value=1.9e-23 Score=160.10 Aligned_cols=100 Identities=27% Similarity=0.506 Sum_probs=81.4
Q ss_pred EEEEEecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchhhhhhhhh--hHH
Q psy9280 41 ILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQTYAA--NVK 118 (143)
Q Consensus 41 v~ve~~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~--~~~ 118 (143)
|.+++++ +|++|+||||++.|+++.+|+++|.+++++++.|+++|+|||+|.|++||+|+|++++....... ...
T Consensus 1 ~~~~~~~---~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 77 (255)
T PRK06563 1 VSRERRG---HVLLIGLDRPAKRNAFDSAMLDDLALALGEYEADDELRVAVLFAHGEHFTAGLDLADVAPKLAAGGFPFP 77 (255)
T ss_pred CeEEEEC---CEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCCcCCcCHHHHhhccccchhhhh
Confidence 3566666 89999999999999999999999999999999999999999999999999999999875422111 111
Q ss_pred hHHHHHH-HHHhcCCCcEEEEEecCC
Q psy9280 119 TGLLEHW-DNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 119 ~~~~~~~-~~l~~~~kP~IAav~G~a 143 (143)
....+.+ ..+..+||||||+|||+|
T Consensus 78 ~~~~~~~~~~l~~~~kPvIAav~G~a 103 (255)
T PRK06563 78 EGGIDPWGTVGRRLSKPLVVAVQGYC 103 (255)
T ss_pred hhhhHHHHHHHhcCCCCEEEEEcCee
Confidence 1122333 358899999999999987
No 54
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=99.90 E-value=2.6e-23 Score=160.83 Aligned_cols=105 Identities=32% Similarity=0.447 Sum_probs=86.8
Q ss_pred CCcccEEEEEecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCC-CCccCCCCcchhhhhh--
Q psy9280 36 VKFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNE-KAFAAGADIKEMLNQT-- 112 (143)
Q Consensus 36 ~~~~~v~ve~~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g-~~FsaG~Dl~~~~~~~-- 112 (143)
.+++.+.+++++ +|++|+||||++.|+++.+|+.+|.+++++++.|+++|+|||+|.| ++||+|+|++++....
T Consensus 10 ~~~~~i~~~~~~---~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~ 86 (273)
T PRK07396 10 KEYEDILYKSAD---GIAKITINRPEVRNAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGYV 86 (273)
T ss_pred CCCcceEEEecC---CEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhccccc
Confidence 356788998876 9999999999999999999999999999999999999999999988 6999999999874321
Q ss_pred hhhhHH-hHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 113 YAANVK-TGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 113 ~~~~~~-~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
...... .....++..+..+||||||+|||+|
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a 118 (273)
T PRK07396 87 DDDGVPRLNVLDLQRLIRTCPKPVIAMVAGYA 118 (273)
T ss_pred chhhhhhhHHHHHHHHHHhCCCCEEEEECCEE
Confidence 111111 1223456789999999999999986
No 55
>PLN02600 enoyl-CoA hydratase
Probab=99.90 E-value=2.2e-23 Score=159.49 Aligned_cols=95 Identities=24% Similarity=0.416 Sum_probs=81.0
Q ss_pred CCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcC-CCCccCCCCcchhhhhhhhh--hHHhHHHHHH
Q psy9280 49 NKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGN-EKAFAAGADIKEMLNQTYAA--NVKTGLLEHW 125 (143)
Q Consensus 49 ~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~-g~~FsaG~Dl~~~~~~~~~~--~~~~~~~~~~ 125 (143)
+++|++|+||||+++|+|+.+|+++|.+++++++.|+++|+|||||. |++||+|+|++++....... .+...+..++
T Consensus 2 ~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 81 (251)
T PLN02600 2 DSGIVELRLDRPEAKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMSPSEVQKFVNSLRSTF 81 (251)
T ss_pred CCcEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhccChHHHHHHHHHHHHHH
Confidence 45899999999999999999999999999999999999999999997 68999999999875432211 1223455667
Q ss_pred HHHhcCCCcEEEEEecCC
Q psy9280 126 DNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 126 ~~l~~~~kP~IAav~G~a 143 (143)
.++..+|||+||+|||+|
T Consensus 82 ~~l~~~~kPvIAav~G~a 99 (251)
T PLN02600 82 SSLEALSIPTIAVVEGAA 99 (251)
T ss_pred HHHHhCCCCEEEEecCee
Confidence 889999999999999987
No 56
>PLN02888 enoyl-CoA hydratase
Probab=99.90 E-value=3.9e-23 Score=159.30 Aligned_cols=104 Identities=37% Similarity=0.575 Sum_probs=85.7
Q ss_pred CCcccEEEEE-ecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchhhhhhhh
Q psy9280 36 VKFENILVDK-VGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQTYA 114 (143)
Q Consensus 36 ~~~~~v~ve~-~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~ 114 (143)
...+.+.++. ++ +|++|+||||++.|+++.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++......
T Consensus 6 ~~~~~i~~~~~~~---~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~ 82 (265)
T PLN02888 6 VSENLILVPKSRN---GIATITINRPKALNALTRPMMVELAAAFKRLDEDDSVKVIILTGSGRAFCSGVDLTAAEEVFKG 82 (265)
T ss_pred CCCCeEEEEeccC---CEEEEEEcCCCcccCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCcccCCCCHHHHHhhccc
Confidence 3446778876 44 8999999999999999999999999999999999999999999999999999999986532111
Q ss_pred hhHHhHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 115 ANVKTGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 115 ~~~~~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
. ......+.+..+..+|||+||+|||+|
T Consensus 83 ~-~~~~~~~~~~~i~~~~kPvIaav~G~a 110 (265)
T PLN02888 83 D-VKDVETDPVAQMERCRKPIIGAINGFA 110 (265)
T ss_pred h-hhHHHHHHHHHHHhCCCCEEEEECCee
Confidence 1 112234556788999999999999987
No 57
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=99.90 E-value=3e-23 Score=158.90 Aligned_cols=100 Identities=33% Similarity=0.522 Sum_probs=81.7
Q ss_pred ccEEEEEecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchhhhhhhhhhHH
Q psy9280 39 ENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQTYAANVK 118 (143)
Q Consensus 39 ~~v~ve~~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~ 118 (143)
+.+.+++++ +|++|+||||++.|+++.+|+++|.+++++++.|+++|+|||+|.|++||+|+|++++..........
T Consensus 3 ~~v~~~~~~---~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 79 (254)
T PRK08252 3 DEVLVERRG---RVLIITINRPEARNAVNAAVAQGLAAALDELDADPDLSVGILTGAGGTFCAGMDLKAFARGERPSIPG 79 (254)
T ss_pred ceEEEEEEC---CEEEEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCceEcCcCHHHHhcccchhhhH
Confidence 467888876 99999999999999999999999999999999999999999999999999999999886432111111
Q ss_pred hHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 119 TGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 119 ~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
..+..++ ...+||||||+|||+|
T Consensus 80 ~~~~~~~--~~~~~kPvIaav~G~a 102 (254)
T PRK08252 80 RGFGGLT--ERPPRKPLIAAVEGYA 102 (254)
T ss_pred HHHHHHH--HhcCCCCEEEEECCEE
Confidence 1222222 2479999999999986
No 58
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=99.90 E-value=3.3e-23 Score=158.84 Aligned_cols=103 Identities=25% Similarity=0.455 Sum_probs=86.0
Q ss_pred CCcccEEEEEecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchhhhhhhhh
Q psy9280 36 VKFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQTYAA 115 (143)
Q Consensus 36 ~~~~~v~ve~~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~ 115 (143)
++|+.+.+++++ +|++|+||||++.|+++.+|+++|.+++++++ +++|+||++|.|++||+|+|++++.......
T Consensus 1 ~~~~~i~~~~~~---~i~~itlnrp~~~Nal~~~~~~~L~~~l~~~~--~~vr~vVl~g~g~~FsaG~Dl~~~~~~~~~~ 75 (255)
T PRK07112 1 MDYQTIRVRQQG---DVCFLQLHRPEAQNTINDRLIAECMDVLDRCE--HAATIVVLEGLPEVFCFGADFSAIAEKPDAG 75 (255)
T ss_pred CCCceEEEEeeC---CEEEEEEcCCCccCCCCHHHHHHHHHHHHHhh--cCceEEEEEcCCCCcccCcCHHHHhhccccc
Confidence 357789999876 99999999999999999999999999999998 3699999999999999999999876422111
Q ss_pred ---h-HHhHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 116 ---N-VKTGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 116 ---~-~~~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
. ....+.+++.++..+||||||+|||+|
T Consensus 76 ~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a 107 (255)
T PRK07112 76 RADLIDAEPLYDLWHRLATGPYVTIAHVRGKV 107 (255)
T ss_pred hhhhhhHHHHHHHHHHHHcCCCCEEEEEecEE
Confidence 1 112345677889999999999999986
No 59
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=99.90 E-value=5.2e-23 Score=166.40 Aligned_cols=121 Identities=20% Similarity=0.254 Sum_probs=94.2
Q ss_pred CCCcchhhhhhhcccCCCcccEEEEEecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCc
Q psy9280 20 SSIQAAHLYIIKYMSTVKFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAF 99 (143)
Q Consensus 20 ~~~~~~~~~~r~~~~~~~~~~v~ve~~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~F 99 (143)
+..++.+.+++.+....-.+.+.++..+ ++++|+||||+++|+|+.+|+.+|.++++.++.|+++++|||+|.|++|
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~v~~e~~~---~~~~ItLNRP~~lNALs~~m~~eL~~al~~~~~D~~vrvVVL~G~GkaF 99 (407)
T PLN02851 23 SYGRSFSALPNYAANDDLQDQVLVEGRA---KSRAAILNRPSSLNALTIPMVARLKRLYESWEENPDIGFVLMKGSGRAF 99 (407)
T ss_pred cCCcccccCCcccccCCCCCCeEEEEEC---CEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCc
Confidence 3334444444444433445678888876 8999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcchhhhhhh----hh--hHHhHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 100 AAGADIKEMLNQTY----AA--NVKTGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 100 saG~Dl~~~~~~~~----~~--~~~~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
|+|+|++++..... .. .+......+...|..+|||+||+|||+|
T Consensus 100 cAGgDl~~l~~~~~~~~~~~~~~~f~~~~~l~~~i~~~pKPvIA~v~G~a 149 (407)
T PLN02851 100 CSGADVVSLYHLINEGNVEECKLFFENLYKFVYLQGTYLKPNVAIMDGIT 149 (407)
T ss_pred cCCcCHHHHHhhccccchHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCEE
Confidence 99999999854211 11 1113344556778899999999999986
No 60
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=99.90 E-value=7e-23 Score=156.77 Aligned_cols=98 Identities=23% Similarity=0.390 Sum_probs=82.9
Q ss_pred EEEEEecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchhhhhhhhhhHHhH
Q psy9280 41 ILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQTYAANVKTG 120 (143)
Q Consensus 41 v~ve~~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~ 120 (143)
+.+++++ +|++|+||||+ .|+++.+|+++|.+++++++.|+++|+|||+|.|++||+|+|++++..... ......
T Consensus 3 v~~~~~~---~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~-~~~~~~ 77 (251)
T TIGR03189 3 VWLERDG---KLLRLRLARPK-ANIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFSFGASVAEHMPDQC-AAMLAS 77 (251)
T ss_pred EEEEeeC---CEEEEEeCCCC-cCCCCHHHHHHHHHHHHHHHcCCCceEEEEECCCCceecCcChhhhCchhH-HHHHHH
Confidence 6677776 89999999997 699999999999999999999999999999999999999999998642211 111233
Q ss_pred HHHHHHHHhcCCCcEEEEEecCC
Q psy9280 121 LLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 121 ~~~~~~~l~~~~kP~IAav~G~a 143 (143)
+.+++.++..+||||||+|||+|
T Consensus 78 ~~~~~~~l~~~~kPvIaav~G~a 100 (251)
T TIGR03189 78 LHKLVIAMLDSPVPILVAVRGQC 100 (251)
T ss_pred HHHHHHHHHhCCCCEEEEecCee
Confidence 45667889999999999999987
No 61
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=99.89 E-value=8.6e-23 Score=164.37 Aligned_cols=105 Identities=30% Similarity=0.432 Sum_probs=87.3
Q ss_pred CCcccEEEEEecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchhhhhh-hh
Q psy9280 36 VKFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQT-YA 114 (143)
Q Consensus 36 ~~~~~v~ve~~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~-~~ 114 (143)
+.++.+.+++++ +|++|+||||+++|+++.+|+.+|.++++.++.|+++|+|||+|.|++||+|+|++++.... ..
T Consensus 8 ~~~~~v~~~~~~---~v~~ItLnrP~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~ 84 (379)
T PLN02874 8 PAEEVVLGEEKG---RVRVITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAGRAFSAGGDLKMFYDGRESD 84 (379)
T ss_pred CCCCceEEEEEC---CEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCccCHHHHHhhcccc
Confidence 456778888876 89999999999999999999999999999999999999999999999999999999875422 11
Q ss_pred hhHH---hHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 115 ANVK---TGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 115 ~~~~---~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
.... ..+..++.++..+|||+||+|||+|
T Consensus 85 ~~~~~~~~~~~~l~~~i~~~~kPvIAaV~G~a 116 (379)
T PLN02874 85 DSCLEVVYRMYWLCYHIHTYKKTQVALVHGLV 116 (379)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCCEEEEecCeE
Confidence 1111 2233445788999999999999986
No 62
>KOG1680|consensus
Probab=99.89 E-value=1.7e-23 Score=159.17 Aligned_cols=109 Identities=46% Similarity=0.780 Sum_probs=91.5
Q ss_pred CCCcccEEEEEecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchhhhhhhh
Q psy9280 35 TVKFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQTYA 114 (143)
Q Consensus 35 ~~~~~~v~ve~~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~ 114 (143)
...++...++..+.+++|+.|+||||+++|+|+..++.||.+++..++.|+++.++|+||.|+.||+|+||+++......
T Consensus 30 ~~~~~~~~~~~~~~d~~I~lItlNRP~~~Nal~~~~m~eL~~A~~~~e~D~s~~viVltG~gksFcsG~Dl~e~~~~~~~ 109 (290)
T KOG1680|consen 30 DQEFEPIKIELVGEDNGIALITLNRPKALNALCRATMLELAEAFKDFESDDSVGVIVLTGSGKSFCSGADLKEMKKDEFQ 109 (290)
T ss_pred ccccCcceeEEeecCCCeEEEEeCChHHhccccHHHHHHHHHHHHHhhccCcccEEEEEcCCCccccccCHHHHhhcccc
Confidence 33444555555555679999999999999999999999999999999999999999999999999999999999876544
Q ss_pred hhHHhHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 115 ANVKTGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 115 ~~~~~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
+.....+.+.+..+...+||+||+|||+|
T Consensus 110 ~~~~~~~~~~~~~~~~~~KPvIaainG~A 138 (290)
T KOG1680|consen 110 DVSDGIFLRVWDLVSRLKKPVIAAINGFA 138 (290)
T ss_pred ccccccccchhhhhhhcccceeEeeecee
Confidence 43334456666667799999999999987
No 63
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=99.89 E-value=9.4e-23 Score=155.37 Aligned_cols=96 Identities=41% Similarity=0.520 Sum_probs=81.2
Q ss_pred EEEEEecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchhhhhhhhhhHHhH
Q psy9280 41 ILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQTYAANVKTG 120 (143)
Q Consensus 41 v~ve~~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~ 120 (143)
+.+++++ +|++|+||||++.|++|.+|+.+|.+++++++.+ ++|+|||||.|++||+|+|+++... .......
T Consensus 2 ~~~~~~~---~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~~-~vr~vvl~g~g~~F~aG~Dl~~~~~---~~~~~~~ 74 (243)
T PRK07854 2 IGVTRDG---QVLTIELQRPERRNALNAELCEELREAVRKAVDE-SARAIVLTGQGTVFCAGADLSGDVY---ADDFPDA 74 (243)
T ss_pred ceEEEeC---CEEEEEeCCCccccCCCHHHHHHHHHHHHHHhcC-CceEEEEECCCCceecccCCccchh---HHHHHHH
Confidence 5677776 8999999999999999999999999999999865 8999999999999999999986321 1112234
Q ss_pred HHHHHHHHhcCCCcEEEEEecCC
Q psy9280 121 LLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 121 ~~~~~~~l~~~~kP~IAav~G~a 143 (143)
+.+++.++..+|||+||+|||+|
T Consensus 75 ~~~~~~~l~~~~kP~Iaav~G~a 97 (243)
T PRK07854 75 LIEMLHAIDAAPVPVIAAINGPA 97 (243)
T ss_pred HHHHHHHHHhCCCCEEEEecCcc
Confidence 55677889999999999999987
No 64
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=99.89 E-value=1.2e-22 Score=164.16 Aligned_cols=103 Identities=24% Similarity=0.372 Sum_probs=85.8
Q ss_pred cccEEEEEecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchhhhhhh---h
Q psy9280 38 FENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQTY---A 114 (143)
Q Consensus 38 ~~~v~ve~~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~---~ 114 (143)
...|.+++++ +|++|+||||+++|+|+.+|+.+|.++++.++.|+++|+|||+|.|++||+|+|++++..... .
T Consensus 36 ~~~V~~e~~g---~v~~ItLNRP~~lNALs~~m~~~L~~al~~~~~D~~vrvVVl~G~GkaFcAGgDl~~l~~~~~~~~~ 112 (401)
T PLN02157 36 DYQVLVEGSG---CSRTAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDIVSLYHLRKRGSP 112 (401)
T ss_pred CCceEEEEEC---CEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCccCCcCHHHHHhhccccch
Confidence 4568888876 999999999999999999999999999999999999999999999999999999998754211 1
Q ss_pred h---hHHhHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 115 A---NVKTGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 115 ~---~~~~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
. .+......++..|..+|||+||+|||+|
T Consensus 113 ~~~~~~~~~~~~l~~~i~~~pkPvIA~v~G~a 144 (401)
T PLN02157 113 DAIREFFSSLYSFIYLLGTYLKPHVAILNGVT 144 (401)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEEEEeCeE
Confidence 1 0111223345778999999999999986
No 65
>PLN02921 naphthoate synthase
Probab=99.89 E-value=1.1e-22 Score=161.00 Aligned_cols=108 Identities=33% Similarity=0.486 Sum_probs=87.7
Q ss_pred CCCcccEEEEEecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCC-CCccCCCCcchhhhhhh
Q psy9280 35 TVKFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNE-KAFAAGADIKEMLNQTY 113 (143)
Q Consensus 35 ~~~~~~v~ve~~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g-~~FsaG~Dl~~~~~~~~ 113 (143)
+.+|+.+.++++. +++|++|+||||++.|+|+.+|+.+|.+++++++.|+++++|||+|.| ++||+|+|++++.....
T Consensus 61 ~~~~~~i~~~~~~-~~~Va~ItLnrP~~~Nal~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~~ 139 (327)
T PLN02921 61 GKEFTDIIYEKAV-GEGIAKITINRPERRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDGY 139 (327)
T ss_pred ccCCceEEEEEec-CCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhcccc
Confidence 3468889998841 238999999999999999999999999999999999999999999988 89999999998753211
Q ss_pred --hhhHH-hHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 114 --AANVK-TGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 114 --~~~~~-~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
..... .....++.+|..+||||||+|||+|
T Consensus 140 ~~~~~~~~~~~~~l~~~l~~~~kPvIAaVnG~a 172 (327)
T PLN02921 140 VGPDDAGRLNVLDLQIQIRRLPKPVIAMVAGYA 172 (327)
T ss_pred cchhHHHHHHHHHHHHHHHhCCCCEEEEECCEE
Confidence 11111 1223456789999999999999986
No 66
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=99.89 E-value=9.4e-23 Score=155.87 Aligned_cols=93 Identities=28% Similarity=0.413 Sum_probs=79.3
Q ss_pred CcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchhhhhhhhhh---HHhHHHHHHH
Q psy9280 50 KNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQTYAAN---VKTGLLEHWD 126 (143)
Q Consensus 50 ~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~---~~~~~~~~~~ 126 (143)
++|++|+||||+ .|+++.+|+.+|.+++++++.|+++|+|||+|.|++||+|+|++++........ ....+.+.+.
T Consensus 10 ~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 88 (249)
T PRK07938 10 PGIAEVTVDYPP-VNALPSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAGVDIKELQATPGFTALIDANRGCFAAFR 88 (249)
T ss_pred CCEEEEEECCCC-cccCCHHHHHHHHHHHHHhhcCCCeEEEEEECCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHH
Confidence 489999999998 599999999999999999999999999999999999999999998754321111 1133456778
Q ss_pred HHhcCCCcEEEEEecCC
Q psy9280 127 NITKAKKPVIAAVNGYA 143 (143)
Q Consensus 127 ~l~~~~kP~IAav~G~a 143 (143)
++..+|||+||+|||+|
T Consensus 89 ~i~~~~kPvIAav~G~a 105 (249)
T PRK07938 89 AVYECAVPVIAAVHGFC 105 (249)
T ss_pred HHHhCCCCEEEEEcCEE
Confidence 89999999999999986
No 67
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=99.89 E-value=1.3e-22 Score=161.47 Aligned_cols=102 Identities=31% Similarity=0.543 Sum_probs=85.8
Q ss_pred ccEEEEEecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCC-CCccCCCCcchhhhhhh---h
Q psy9280 39 ENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNE-KAFAAGADIKEMLNQTY---A 114 (143)
Q Consensus 39 ~~v~ve~~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g-~~FsaG~Dl~~~~~~~~---~ 114 (143)
+.+.+++++ +|++|+||||+++|+++.+|+.+|.+++++++.|+++|+|||||.| ++||+|+|++++..... .
T Consensus 3 ~~v~~~~~~---~v~~itLnrP~~~Nal~~~m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~ 79 (342)
T PRK05617 3 DEVLAEVEG---GVGVITLNRPKALNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDP 79 (342)
T ss_pred ceEEEEEEC---CEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCc
Confidence 357888877 9999999999999999999999999999999999999999999988 99999999998754211 1
Q ss_pred h---hHHhHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 115 A---NVKTGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 115 ~---~~~~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
. .......+++.++..+|||+||+|||+|
T Consensus 80 ~~~~~~~~~~~~~~~~i~~~~kPvIAaVnG~a 111 (342)
T PRK05617 80 LAADRFFREEYRLNALIARYPKPYIALMDGIV 111 (342)
T ss_pred hhHHHHHHHHHHHHHHHHhCCCCEEEEEcCEE
Confidence 1 1112334567889999999999999986
No 68
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=99.89 E-value=1.4e-22 Score=155.72 Aligned_cols=100 Identities=31% Similarity=0.449 Sum_probs=83.4
Q ss_pred cEEEEEecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCC-CCccCCCCcchhhhhhhh-hhH
Q psy9280 40 NILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNE-KAFAAGADIKEMLNQTYA-ANV 117 (143)
Q Consensus 40 ~v~ve~~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g-~~FsaG~Dl~~~~~~~~~-~~~ 117 (143)
.+.+++++ +|++|+||||+ .|+++.+|+++|.+++++++.|+++|+|||+|.| ++||+|+|++++...... ..+
T Consensus 4 ~i~~~~~~---~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~ 79 (261)
T PRK03580 4 SLHTTRNG---SILEITLDRPK-ANAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAPDADF 79 (261)
T ss_pred eEEEEEEC---CEEEEEECCcc-ccCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccCcchhhh
Confidence 58888877 99999999996 6999999999999999999999999999999987 799999999987643221 111
Q ss_pred HhHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 118 KTGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 118 ~~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
.......+.++..+|||+||+|||+|
T Consensus 80 ~~~~~~~~~~l~~~~kPvIaav~G~a 105 (261)
T PRK03580 80 GPGGFAGLTEIFDLDKPVIAAVNGYA 105 (261)
T ss_pred hhhhhHHHHHHHhCCCCEEEEECCee
Confidence 11223456789999999999999987
No 69
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=99.88 E-value=1.5e-22 Score=153.94 Aligned_cols=98 Identities=36% Similarity=0.522 Sum_probs=86.0
Q ss_pred EEEecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchhhhhhhhh--hHHhH
Q psy9280 43 VDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQTYAA--NVKTG 120 (143)
Q Consensus 43 ve~~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~--~~~~~ 120 (143)
++.++ +|++|+||+|++.|++|.+|+++|.++|+.++.|+++|+||++|.+++||+|+|++++....... .+...
T Consensus 2 ~~~~~---~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvv~~~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~ 78 (245)
T PF00378_consen 2 YEIED---GVATITLNRPEKRNALNPEMLDELEEALDEAEADPDVKVVVISGGGKAFCAGADLKEFLNSDEEEAREFFRR 78 (245)
T ss_dssp EEEET---TEEEEEEECGGGTTEBSHHHHHHHHHHHHHHHHSTTESEEEEEESTSESBESB-HHHHHHHHHHHHHHHHHH
T ss_pred EEEEC---CEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhcCCccEEEEeecccccccccchhhhhccccccccccchh
Confidence 56666 99999999998899999999999999999999999999999999999999999999998773222 23366
Q ss_pred HHHHHHHHhcCCCcEEEEEecCC
Q psy9280 121 LLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 121 ~~~~~~~l~~~~kP~IAav~G~a 143 (143)
+..++.++..+|||+||+|||+|
T Consensus 79 ~~~l~~~l~~~~kp~Iaav~G~a 101 (245)
T PF00378_consen 79 FQELLSRLANFPKPTIAAVNGHA 101 (245)
T ss_dssp HHHHHHHHHHSSSEEEEEESSEE
T ss_pred hccccccchhhhhheeecccccc
Confidence 77888999999999999999986
No 70
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=99.88 E-value=5.7e-22 Score=159.54 Aligned_cols=102 Identities=27% Similarity=0.440 Sum_probs=83.6
Q ss_pred ccEEEEEecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchhhhhhhhhh--
Q psy9280 39 ENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQTYAAN-- 116 (143)
Q Consensus 39 ~~v~ve~~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~-- 116 (143)
..+.++.++ +|++|+||||+++|+|+.+|+.+|.++|++++.|+++++|||+|.|++||+|+|++++........
T Consensus 9 ~~v~~~~~~---~i~~ItLnRP~~lNALs~~m~~~L~~al~~~~~d~~v~~VVl~G~G~~FcAGgDl~~l~~~~~~~~~~ 85 (381)
T PLN02988 9 SQVLVEEKS---SVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCAGGDVAAVVRDIEQGNWR 85 (381)
T ss_pred CceEEEEEC---CEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCcccCcCHHHHHhhhcccchh
Confidence 367888776 999999999999999999999999999999999999999999999999999999999753211110
Q ss_pred ----HHhHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 117 ----VKTGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 117 ----~~~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
+......+...+..+|||+||+|||+|
T Consensus 86 ~~~~~f~~~~~l~~~i~~~pKPvIa~v~G~a 116 (381)
T PLN02988 86 LGANFFSDEYMLNYVMATYSKAQVSILNGIV 116 (381)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEecCeE
Confidence 011112334678899999999999986
No 71
>PRK08788 enoyl-CoA hydratase; Validated
Probab=99.88 E-value=8.1e-22 Score=153.50 Aligned_cols=113 Identities=15% Similarity=0.151 Sum_probs=86.9
Q ss_pred hhhcccCCCcccEEEEEecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhc-----CCCeeEEEEEcC-CCCccCC
Q psy9280 29 IIKYMSTVKFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQ-----DSSVAAIVLTGN-EKAFAAG 102 (143)
Q Consensus 29 ~r~~~~~~~~~~v~ve~~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~-----d~~vr~vVltg~-g~~FsaG 102 (143)
.|++.+...+.++.++.+. +++|++|+|| |+++|+++.+|+++|.+++++++. |+++|+|||+|. |++||+|
T Consensus 5 ~~~~~~~~~~~~~~i~~e~-~~~ia~itl~-p~~~Nal~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG 82 (287)
T PRK08788 5 VRPFPEAGELSQLRVYYEE-ERNVMWMYMR-AQPRPCFNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLG 82 (287)
T ss_pred ccccccccccCceEEEEEc-cCCEEEEEEC-CCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeC
Confidence 3566666777787777763 5599999996 888999999999999999999998 889999999998 8999999
Q ss_pred CCcchhhhh---hhhhhH---HhHHHHHHHHHh---cCCCcEEEEEecCC
Q psy9280 103 ADIKEMLNQ---TYAANV---KTGLLEHWDNIT---KAKKPVIAAVNGYA 143 (143)
Q Consensus 103 ~Dl~~~~~~---~~~~~~---~~~~~~~~~~l~---~~~kP~IAav~G~a 143 (143)
+|++++... ...... ...+...+.++. .+||||||+|||+|
T Consensus 83 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pkPvIAaV~G~a 132 (287)
T PRK08788 83 GDLALFAELIRAGDRDALLAYARACVDGVHAFHRGFGAGAISIALVQGDA 132 (287)
T ss_pred cCHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEECCee
Confidence 999987531 111111 112223333333 79999999999997
No 72
>PRK08321 naphthoate synthase; Validated
Probab=99.88 E-value=5.7e-22 Score=155.37 Aligned_cols=104 Identities=27% Similarity=0.298 Sum_probs=83.9
Q ss_pred CcccEEEEE--ecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCC-------CCccCCCCcch
Q psy9280 37 KFENILVDK--VGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNE-------KAFAAGADIKE 107 (143)
Q Consensus 37 ~~~~v~ve~--~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g-------~~FsaG~Dl~~ 107 (143)
.++++.+++ ++ +|++||||||+++|+++.+|+.+|.+++++++.|+++|+|||+|.| ++||+|+|+++
T Consensus 21 ~~~~i~~~~~~~~---~va~itlnrP~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~ 97 (302)
T PRK08321 21 DFTDITYHRAVDQ---GTVRIAFDRPEVRNAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRI 97 (302)
T ss_pred CceeEEEEEecCC---CEEEEEeCCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhh
Confidence 467899988 54 8999999999999999999999999999999999999999999987 59999999997
Q ss_pred hhhhh-------h-h--hh-HH--hHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 108 MLNQT-------Y-A--AN-VK--TGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 108 ~~~~~-------~-~--~~-~~--~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
+.... . . .. .. .....++..+..+||||||+|||+|
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkP~IAaV~G~a 146 (302)
T PRK08321 98 RGRDGYQYAEGDEADTVDPARAGRLHILEVQRLIRFMPKVVIAVVPGWA 146 (302)
T ss_pred hccccccccccccccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEcCee
Confidence 53210 0 0 00 00 1112345678899999999999987
No 73
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=99.87 E-value=1.4e-21 Score=151.62 Aligned_cols=101 Identities=21% Similarity=0.354 Sum_probs=82.9
Q ss_pred ccEEEEE-ecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCC--CCccCCCCcchhhhhhh-h
Q psy9280 39 ENILVDK-VGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNE--KAFAAGADIKEMLNQTY-A 114 (143)
Q Consensus 39 ~~v~ve~-~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g--~~FsaG~Dl~~~~~~~~-~ 114 (143)
+.+.+++ ++ +|++|+||||+ .|+++.+|+++|.+++++++.|+++|+|||||.| ++||+|+|++++..... .
T Consensus 11 ~~i~~~~~~~---~Va~itlnr~~-~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~~~~ 86 (278)
T PLN03214 11 PGVRVDRRPG---GIAVVWLAKEP-VNSMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKTSA 86 (278)
T ss_pred CceEEEEcCC---CEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhccccch
Confidence 4788887 44 89999999985 7999999999999999999999999999999987 79999999998753211 1
Q ss_pred h---hHHhHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 115 A---NVKTGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 115 ~---~~~~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
. .+......++.+|..+||||||+|||+|
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a 118 (278)
T PLN03214 87 ARYAEFWLTQTTFLVRLLRSRLATVCAIRGAC 118 (278)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCEEEEEcCcc
Confidence 1 1112234466789999999999999987
No 74
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=99.87 E-value=1e-21 Score=149.44 Aligned_cols=99 Identities=21% Similarity=0.263 Sum_probs=80.5
Q ss_pred EEEEEecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCee-EEEEEcCCCCccCCCCcchhhhhh--hh--h
Q psy9280 41 ILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVA-AIVLTGNEKAFAAGADIKEMLNQT--YA--A 115 (143)
Q Consensus 41 v~ve~~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr-~vVltg~g~~FsaG~Dl~~~~~~~--~~--~ 115 (143)
+.+++++ +|++|+||||+ .|+++.+|+++|.+++++++.|++++ +||++|.|++||+|+|++++.... .. .
T Consensus 2 ~~~~~~~---~v~~i~Lnrp~-~Nal~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g~~FsaG~Dl~~~~~~~~~~~~~~ 77 (239)
T PLN02267 2 CTLEKRG---NLFILTLTGDG-EHRLNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAAGSAPSRLH 77 (239)
T ss_pred ceeEecC---CEEEEEeCCCC-cCcCCHHHHHHHHHHHHHHHhCCCCceEEEEcCCCCceeCCcCHHHHhccccCHHHHH
Confidence 4566665 89999999998 49999999999999999999998876 666789999999999999875321 11 1
Q ss_pred hHHhHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 116 NVKTGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 116 ~~~~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
.....+.+++.++..+||||||+|||+|
T Consensus 78 ~~~~~~~~~~~~l~~~~kPvIAaV~G~a 105 (239)
T PLN02267 78 LMVAKLRPLVADLISLPMPTIAAVTGHA 105 (239)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEECCcc
Confidence 1123456677899999999999999997
No 75
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=99.87 E-value=1.9e-21 Score=146.90 Aligned_cols=99 Identities=30% Similarity=0.363 Sum_probs=82.0
Q ss_pred ccEEEEEecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchhhhhhhhh-hH
Q psy9280 39 ENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQTYAA-NV 117 (143)
Q Consensus 39 ~~v~ve~~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~-~~ 117 (143)
+.+.+++++ +|++|+||||+ .|+++.+|+++|.+++++++ +++|+||++|.|++||+|+|++++....... ..
T Consensus 3 ~~i~~~~~~---~v~~itln~~~-~Nal~~~~~~~l~~~l~~~~--~~~~vvvl~g~g~~F~~G~Dl~~~~~~~~~~~~~ 76 (229)
T PRK06213 3 ELVSYTLED---GVATITLDDGK-VNALSPAMIDALNAALDQAE--DDRAVVVITGQPGIFSGGFDLKVMTSGAQAAIAL 76 (229)
T ss_pred ceEEEEecC---CEEEEEeCCCC-CCCCCHHHHHHHHHHHHHhh--ccCcEEEEeCCCCceEcCcCHHHHhcchHhHHHH
Confidence 467888876 99999999985 79999999999999999998 4579999999999999999999876431111 11
Q ss_pred HhHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 118 KTGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 118 ~~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
...+.+++.++..+|||+||+|||+|
T Consensus 77 ~~~~~~l~~~l~~~~kPvIAav~G~a 102 (229)
T PRK06213 77 LTAGSTLARRLLSHPKPVIVACTGHA 102 (229)
T ss_pred HHHHHHHHHHHHcCCCCEEEEEcCee
Confidence 23455677899999999999999987
No 76
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=99.86 E-value=3.9e-21 Score=140.99 Aligned_cols=99 Identities=43% Similarity=0.594 Sum_probs=87.3
Q ss_pred EEEEecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchhhhhhhhh----hH
Q psy9280 42 LVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQTYAA----NV 117 (143)
Q Consensus 42 ~ve~~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~----~~ 117 (143)
.+++++ +|++|+||+|++.|+++.+|+++|.++++.++.|+++++|||+|.|+.||+|.|++++....... ..
T Consensus 2 ~~~~~~---~i~~i~l~~~~~~N~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~~~~~~~~~ 78 (195)
T cd06558 2 LVERDG---GVATITLNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAGEEARAF 78 (195)
T ss_pred EEEEEC---CEEEEEECCccccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcccccchhHHHH
Confidence 566665 89999999999899999999999999999999999999999999999999999999987655432 23
Q ss_pred HhHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 118 KTGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 118 ~~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
...+.+++.++..+|||+||+|||+|
T Consensus 79 ~~~~~~~~~~i~~~~~p~Ia~v~G~a 104 (195)
T cd06558 79 IRELQELLRALLRLPKPVIAAVNGAA 104 (195)
T ss_pred HHHHHHHHHHHHcCCCCEEEEECCee
Confidence 35667788999999999999999986
No 77
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.85 E-value=6.8e-21 Score=163.76 Aligned_cols=101 Identities=26% Similarity=0.401 Sum_probs=85.2
Q ss_pred cEEEEE-ecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchhhhh---hhh-
Q psy9280 40 NILVDK-VGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQ---TYA- 114 (143)
Q Consensus 40 ~v~ve~-~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~---~~~- 114 (143)
.+.++. ++ +|++|+||||+++|+++.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++... ...
T Consensus 7 ~i~~~~~~~---~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~ 83 (715)
T PRK11730 7 TLQVDWLED---GIAELVFDAPGSVNKLDRATLASLGEALDALEAQSDLKGLLLTSAKDAFIVGADITEFLSLFAAPEEE 83 (715)
T ss_pred eEEEEEcCC---CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCcEEEEEECCCCccccCcCHHHHhhhccCCHHH
Confidence 577775 44 8999999999999999999999999999999999999999999999999999999987642 111
Q ss_pred -hhHHhHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 115 -ANVKTGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 115 -~~~~~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
..+...+.+++.++..+|||+||+|||+|
T Consensus 84 ~~~~~~~~~~~~~~i~~~~kPvIAav~G~a 113 (715)
T PRK11730 84 LSQWLHFANSIFNRLEDLPVPTVAAINGYA 113 (715)
T ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEECCEe
Confidence 11223455667889999999999999987
No 78
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=99.85 E-value=6e-21 Score=151.46 Aligned_cols=92 Identities=27% Similarity=0.357 Sum_probs=77.4
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCC-CCccCCCCcchhhhhh---hhh--hHHhHHHHHH
Q psy9280 52 VGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNE-KAFAAGADIKEMLNQT---YAA--NVKTGLLEHW 125 (143)
Q Consensus 52 V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g-~~FsaG~Dl~~~~~~~---~~~--~~~~~~~~~~ 125 (143)
+++|+||||+++|+++.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++.... ... .....+.+++
T Consensus 38 ~A~ItLNRP~k~NAls~~ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~~~~~~~~~~~~~~~l~ 117 (360)
T TIGR03200 38 NAWIILDNPKQYNSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRLFNDMV 117 (360)
T ss_pred EEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcccChhHHHHHHHHHHHHH
Confidence 556999999999999999999999999999999999999999998 6999999999876421 111 1113345667
Q ss_pred HHHhcCCCcEEEEEecCC
Q psy9280 126 DNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 126 ~~l~~~~kP~IAav~G~a 143 (143)
.++..+||||||+|||+|
T Consensus 118 ~~i~~~pKPVIAAVnG~A 135 (360)
T TIGR03200 118 SAILGCDKPVICRVNGMR 135 (360)
T ss_pred HHHHhCCCCEEEEECCEe
Confidence 889999999999999986
No 79
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=99.83 E-value=3.8e-20 Score=159.07 Aligned_cols=102 Identities=25% Similarity=0.388 Sum_probs=85.9
Q ss_pred cEEEEEecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchhhhh---hhhh-
Q psy9280 40 NILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQ---TYAA- 115 (143)
Q Consensus 40 ~v~ve~~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~---~~~~- 115 (143)
.+.++.. +++|++|+||||++.|+++.+|+.+|.+++++++.|+++|+|||+|.|++||+|+|++++... ....
T Consensus 7 ~i~~~~~--~~gva~Itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~ 84 (714)
T TIGR02437 7 TIQVTAL--EDGIAELKFDAPGSVNKFDRATLASLDQALDAIKAQSSLKGVILTSGKDAFIVGADITEFLGLFALPDAEL 84 (714)
T ss_pred eEEEEEc--cCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccCcCHHHHhhcccCCHHHH
Confidence 5777753 238999999999999999999999999999999999999999999999999999999998642 1111
Q ss_pred -hHHhHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 116 -NVKTGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 116 -~~~~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
.+......++.+|..+|||+||+|||+|
T Consensus 85 ~~~~~~~~~~~~~i~~~pkPvIAai~G~a 113 (714)
T TIGR02437 85 IQWLLFANSIFNKLEDLPVPTVAAINGIA 113 (714)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEECCee
Confidence 1223456678899999999999999987
No 80
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=99.83 E-value=4.5e-20 Score=154.05 Aligned_cols=107 Identities=22% Similarity=0.243 Sum_probs=85.6
Q ss_pred cCCCcccEEEEEecCCCcEEEEEEcCCC----------CCCCCCHHHHHHHHHHHHHHh-cCCCeeEEEEEcC-CCCccC
Q psy9280 34 STVKFENILVDKVGKNKNVGLVQLNRPK----------SLNALCDALVSEVAAAVQQFD-QDSSVAAIVLTGN-EKAFAA 101 (143)
Q Consensus 34 ~~~~~~~v~ve~~~~~~~V~~I~ln~p~----------~~Nal~~~~~~el~~~l~~~~-~d~~vr~vVltg~-g~~Fsa 101 (143)
+.+.|+++.+++++ +|++|+||||+ +.|+++.+|+++|.+++++++ .|+++|+|||||. |++||+
T Consensus 6 ~~~~~~~v~~~~~g---~Va~ItLnrpe~~~~~p~~~~k~Nal~~~~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~Fca 82 (546)
T TIGR03222 6 EPSQYRHWKLTFDG---PVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCS 82 (546)
T ss_pred CCCCCceEEEEeeC---CEEEEEEecccccccCccccccCCCCCHHHHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcC
Confidence 44668889999887 89999999975 899999999999999999999 7899999999986 689999
Q ss_pred CCCcchhhhhhhh--hhHHh----HHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 102 GADIKEMLNQTYA--ANVKT----GLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 102 G~Dl~~~~~~~~~--~~~~~----~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
|+|++++...... ..... ....+...+..+|||+||+|||+|
T Consensus 83 G~DL~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~pkPvIAAVnG~a 130 (546)
T TIGR03222 83 GANIFMLGLSTHAWKVNFCKFTNETRNGIEDSSRHSGLKFLAAVNGTC 130 (546)
T ss_pred CcCHHHHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEe
Confidence 9999987532111 11101 112234567789999999999986
No 81
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=99.83 E-value=4.8e-20 Score=158.85 Aligned_cols=106 Identities=22% Similarity=0.419 Sum_probs=87.9
Q ss_pred CCCcccEEEEEecCCCcEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCeeEE-EEEcCCCCccCCCCcchhhhhh
Q psy9280 35 TVKFENILVDKVGKNKNVGLVQLNRPK-SLNALCDALVSEVAAAVQQFDQDSSVAAI-VLTGNEKAFAAGADIKEMLNQT 112 (143)
Q Consensus 35 ~~~~~~v~ve~~~~~~~V~~I~ln~p~-~~Nal~~~~~~el~~~l~~~~~d~~vr~v-Vltg~g~~FsaG~Dl~~~~~~~ 112 (143)
.+.++.+.+++++ +|++|+||+|+ +.|+|+.+|+.+|.+++++++.|+++|+| |++|.|++||+|+|++++....
T Consensus 9 ~~~~~~~~~~~~~---gVa~itlnrP~~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVvltg~g~~F~aG~Dl~~~~~~~ 85 (737)
T TIGR02441 9 LMARTHRHYEVKG---DVAVVKIDSPNSKVNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKPGSFVAGADIQMIAACK 85 (737)
T ss_pred CCCCCeEEEEEEC---CEEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHhhCCCCEEEEEEECCCCcceeCcCHHHHhccC
Confidence 3556778888876 99999999998 58999999999999999999999999976 4589999999999999986421
Q ss_pred h-hh--hHHhHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 113 Y-AA--NVKTGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 113 ~-~~--~~~~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
. .. .+......++.++..+||||||+|||+|
T Consensus 86 ~~~~~~~~~~~~~~l~~~i~~~~kPvIAav~G~a 119 (737)
T TIGR02441 86 TAQEVTQLSQEGQEMFERIEKSQKPIVAAISGSC 119 (737)
T ss_pred ChHHHHHHHHHHHHHHHHHHhCCCCEEEEECCEe
Confidence 1 11 1123455678899999999999999987
No 82
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=99.83 E-value=9.3e-20 Score=152.42 Aligned_cols=115 Identities=10% Similarity=0.141 Sum_probs=88.3
Q ss_pred hhhhcc-cCCCcccEEEEEecCCCcEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHHHhc-CCCeeEEEE
Q psy9280 28 YIIKYM-STVKFENILVDKVGKNKNVGLVQLNRPKSL-------------NALCDALVSEVAAAVQQFDQ-DSSVAAIVL 92 (143)
Q Consensus 28 ~~r~~~-~~~~~~~v~ve~~~~~~~V~~I~ln~p~~~-------------Nal~~~~~~el~~~l~~~~~-d~~vr~vVl 92 (143)
+-|..- .+-.|+++.++.+- +++|++||||||+++ |+|+.+|+++|.+++++++. |+++|+|||
T Consensus 248 ~~~~~~~~~~~~~~~~v~~~~-~~~va~itlnrP~~~Na~~~~~~~~~~~Nal~~~~~~eL~~al~~~~~~d~~vr~vVl 326 (550)
T PRK08184 248 LERTIDADGLRYRHVDVEIDR-AARTATITVKAPTAAQPADIAGIVAAGAAWWPLQMARELDDAILHLRTNELDIGTWVL 326 (550)
T ss_pred ccccccCCceeeEEEEEEEEc-cCCEEEEEEeCcccccccccccccccccccCCHHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 345444 55667777777652 348999999999988 68999999999999999986 799999999
Q ss_pred EcCC-CCccCCCCcchhhhhhh--hhhHHhHHHHHHHHHhcCCCcEEEEEe-cCC
Q psy9280 93 TGNE-KAFAAGADIKEMLNQTY--AANVKTGLLEHWDNITKAKKPVIAAVN-GYA 143 (143)
Q Consensus 93 tg~g-~~FsaG~Dl~~~~~~~~--~~~~~~~~~~~~~~l~~~~kP~IAav~-G~a 143 (143)
||.| ++||+|+|++.+..... .......+...+.+|..+||||||+|| |+|
T Consensus 327 tg~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~~G~a 381 (550)
T PRK08184 327 KTEGDAAAVLAADATLLAHKDHWLVRETRGYLRRTLKRLDVTSRSLFALIEPGSC 381 (550)
T ss_pred EcCCCCcEEeCCChhhhcccchHHHHHHHHHHHHHHHHHHhCCCCEEEEECCCce
Confidence 9998 49999999874321111 011113344567899999999999997 987
No 83
>KOG1679|consensus
Probab=99.82 E-value=6.5e-20 Score=135.55 Aligned_cols=106 Identities=27% Similarity=0.506 Sum_probs=92.8
Q ss_pred cccEEEEE-ecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc-CCCCccCCCCcchhhhhhhhh
Q psy9280 38 FENILVDK-VGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG-NEKAFAAGADIKEMLNQTYAA 115 (143)
Q Consensus 38 ~~~v~ve~-~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg-~g~~FsaG~Dl~~~~~~~~~~ 115 (143)
-..+.+++ .+++.||.+|-||||.+.|+++..|+++|.++++++..|+.+|+|+|.+ .++.||+|+||++...++..+
T Consensus 26 ~~Ev~v~~L~g~~~GItvl~mNRpa~kNsl~r~~~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~Ms~~E 105 (291)
T KOG1679|consen 26 ANEVFVRRLTGKDEGITILNMNRPAKKNSLGRVFVKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTMSPSE 105 (291)
T ss_pred CceeeeeeccCCCCCeEEEecCChhhhccHHHHHHHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcCCHHH
Confidence 45677777 5567799999999999999999999999999999999999999999976 589999999999998877655
Q ss_pred h--HHhHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 116 N--VKTGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 116 ~--~~~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
. +-..+..++..++++|.|+||||+|.|
T Consensus 106 v~~fV~~lR~~~~dIe~Lp~P~IAAidG~A 135 (291)
T KOG1679|consen 106 VTRFVNGLRGLFNDIERLPQPVIAAIDGAA 135 (291)
T ss_pred HHHHHHHHHHHHHHHHhCCccceehhcchh
Confidence 4 225666778999999999999999975
No 84
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=99.82 E-value=9.5e-20 Score=152.12 Aligned_cols=113 Identities=14% Similarity=0.125 Sum_probs=86.8
Q ss_pred hhcc-cCCCcccEEEEEecCCCcEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHHHh-cCCCeeEEEEEc
Q psy9280 30 IKYM-STVKFENILVDKVGKNKNVGLVQLNRPKSL-------------NALCDALVSEVAAAVQQFD-QDSSVAAIVLTG 94 (143)
Q Consensus 30 r~~~-~~~~~~~v~ve~~~~~~~V~~I~ln~p~~~-------------Nal~~~~~~el~~~l~~~~-~d~~vr~vVltg 94 (143)
|.+- -+..|.+|.++.+. +++|++||||||++. |+|+.+|+.+|.+++.+++ +|+++|+|||||
T Consensus 246 ~~~~~~~~~~~~~~v~~~~-~~~va~itlnrP~~~~~~~~~~~~~~~~Nal~~~~~~~L~~a~~~~~~~d~~vr~vVl~g 324 (546)
T TIGR03222 246 RTIDEDGVRYPTVDVAIDR-AARTATITLKGPKAAQPADIAAIVAQGANWWPLKLARELDDAILHLRTNELDIGLWVFRT 324 (546)
T ss_pred hhcccCCcceeeEEEEEec-cCCEEEEEecChhhcCccccccccccccCcCCHHHHHHHHHHHHHHhhCCCCeEEEEEEc
Confidence 4443 44556676665542 348999999999999 9999999999999999998 459999999999
Q ss_pred CCCC-ccCCCCcchhhhhhhh--hhHHhHHHHHHHHHhcCCCcEEEEE-ecCC
Q psy9280 95 NEKA-FAAGADIKEMLNQTYA--ANVKTGLLEHWDNITKAKKPVIAAV-NGYA 143 (143)
Q Consensus 95 ~g~~-FsaG~Dl~~~~~~~~~--~~~~~~~~~~~~~l~~~~kP~IAav-~G~a 143 (143)
.|+. ||+|+|++........ ........+.+.+|..+|||+||+| ||+|
T Consensus 325 ~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpviAav~~G~a 377 (546)
T TIGR03222 325 QGDAELVLAADALLEAHKDHWFVRETIGYLRRTLARLDVSSRSLFALIEPGSC 377 (546)
T ss_pred CCCCceecCcCccccccccchhHHHHHHHHHHHHHHHHcCCCCEEEEECCCeE
Confidence 9987 9999999843221110 1111233457789999999999999 8986
No 85
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=99.82 E-value=1.6e-19 Score=154.93 Aligned_cols=94 Identities=23% Similarity=0.423 Sum_probs=79.5
Q ss_pred CcEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEE-EcCCCCccCCCCcchhhhhhhh---hhHHhHHHHH
Q psy9280 50 KNVGLVQLNRP-KSLNALCDALVSEVAAAVQQFDQDSSVAAIVL-TGNEKAFAAGADIKEMLNQTYA---ANVKTGLLEH 124 (143)
Q Consensus 50 ~~V~~I~ln~p-~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVl-tg~g~~FsaG~Dl~~~~~~~~~---~~~~~~~~~~ 124 (143)
++|++|+|||| +++|+|+.+|+++|.+++++++.|+++|+||| +|.|++||+|+|++++...... ......+..+
T Consensus 9 ~~Va~itlnrp~~~~Nal~~~~~~eL~~~l~~~~~d~~vr~VVl~~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~ 88 (699)
T TIGR02440 9 DGIAILTIDVPGEKMNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISMLAACQTAGEAKALAQQGQVL 88 (699)
T ss_pred CCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCceeeccCchhhhccCChhHHHHHHHHHHHH
Confidence 48999999999 68999999999999999999999999999997 6789999999999998542111 1112345667
Q ss_pred HHHHhcCCCcEEEEEecCC
Q psy9280 125 WDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 125 ~~~l~~~~kP~IAav~G~a 143 (143)
+.++..+||||||+|||+|
T Consensus 89 ~~~l~~~~kPvIAaVnG~a 107 (699)
T TIGR02440 89 FAELEALPIPVVAAIHGAC 107 (699)
T ss_pred HHHHHhCCCCEEEEECCEe
Confidence 7899999999999999987
No 86
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.81 E-value=2e-19 Score=154.56 Aligned_cols=102 Identities=22% Similarity=0.383 Sum_probs=84.0
Q ss_pred cEEEEEecCCCcEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcC-CCCccCCCCcchhhhhhhh---
Q psy9280 40 NILVDKVGKNKNVGLVQLNRP-KSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGN-EKAFAAGADIKEMLNQTYA--- 114 (143)
Q Consensus 40 ~v~ve~~~~~~~V~~I~ln~p-~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~-g~~FsaG~Dl~~~~~~~~~--- 114 (143)
.+.++++ +++|++|+|||| ++.|+++.+|+++|.+++++++.|+++|+|||+|. |++||+|+|++++......
T Consensus 6 ~~~~~~~--~~~va~itlnrp~~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~~~~~ 83 (708)
T PRK11154 6 AFTLNVR--EDNIAVITIDVPGEKMNTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACKTAQEA 83 (708)
T ss_pred eEEEEEc--CCCEEEEEECCCCCCCcCCCHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccCCHHHH
Confidence 4667773 238999999999 58999999999999999999999999999999985 5899999999987542211
Q ss_pred hhHHhHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 115 ANVKTGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 115 ~~~~~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
..+...+..++.+|..+||||||+|||+|
T Consensus 84 ~~~~~~~~~~~~~i~~~~kPvIAaV~G~a 112 (708)
T PRK11154 84 EALARQGQQLFAEIEALPIPVVAAIHGAC 112 (708)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEECCee
Confidence 11223455678899999999999999987
No 87
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=99.81 E-value=3.2e-19 Score=149.25 Aligned_cols=106 Identities=21% Similarity=0.223 Sum_probs=84.4
Q ss_pred CCCcccEEEEEecCCCcEEEEEEcCC-------C---CCCCCCHHHHHHHHHHHHHHh-cCCCeeEEEEEcC-CCCccCC
Q psy9280 35 TVKFENILVDKVGKNKNVGLVQLNRP-------K---SLNALCDALVSEVAAAVQQFD-QDSSVAAIVLTGN-EKAFAAG 102 (143)
Q Consensus 35 ~~~~~~v~ve~~~~~~~V~~I~ln~p-------~---~~Nal~~~~~~el~~~l~~~~-~d~~vr~vVltg~-g~~FsaG 102 (143)
.+.++++.+++++ +|++|+|||| + +.|+++.+|+.+|.+++++++ .++++|+|||+|. |++||+|
T Consensus 11 ~~~~~~~~~e~~~---~Va~ItLnrpe~~~~rP~~~~~~Nal~~~m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG 87 (550)
T PRK08184 11 PSQYRHWKLSFDG---PVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSG 87 (550)
T ss_pred CCCCceEEEEeeC---CEEEEEEcCccccccCcccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCc
Confidence 3668899999887 9999999965 3 899999999999999999999 7899999999996 5899999
Q ss_pred CCcchhhhhhhhhh--HHh---HH-HHHHHHHhcCCCcEEEEEecCC
Q psy9280 103 ADIKEMLNQTYAAN--VKT---GL-LEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 103 ~Dl~~~~~~~~~~~--~~~---~~-~~~~~~l~~~~kP~IAav~G~a 143 (143)
+|++++........ ... .. ..+...+..+||||||+|||+|
T Consensus 88 ~DL~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~pkPvIAAVnG~a 134 (550)
T PRK08184 88 ANIFMLGGSSHAWKVNFCKFTNETRNGIEDSSRHSGLKFIAAVNGTC 134 (550)
T ss_pred cCHHhHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEe
Confidence 99998754221110 101 11 1234567889999999999987
No 88
>KOG0016|consensus
Probab=99.78 E-value=2e-18 Score=130.31 Aligned_cols=107 Identities=26% Similarity=0.356 Sum_probs=90.8
Q ss_pred cCCCcccEEEEEecCCCcEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchhhhhh
Q psy9280 34 STVKFENILVDKVGKNKNVGLVQLN-RPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQT 112 (143)
Q Consensus 34 ~~~~~~~v~ve~~~~~~~V~~I~ln-~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~ 112 (143)
+.++|..+.+++++ ++++|.+| ||++.|+++.+++.++.++|++...|+++..++++|.|.+||+|.|+..+....
T Consensus 2 ~~~~~~~~vv~~~~---g~~~I~~~~~Pkk~Nal~~e~y~~i~~al~~a~~dds~~~tv~s~~G~~f~sG~Df~~~~~~~ 78 (266)
T KOG0016|consen 2 SAMRYREIVVTREN---GPFFIALNIRPKKKNALNREDYVYIQRALEEANDDDSVSITVLSSNGSYFCSGLDFSPFAKAL 78 (266)
T ss_pred CcccccceEEEecC---CcEEEEecCCCcccccccHHHHHHHHHHHHHhhcccceEEEEEecCccEEeeccccchhhhcC
Confidence 35678899999987 99999999 999999999999999999999999999998999999999999999999987643
Q ss_pred hhhhHH---------hHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 113 YAANVK---------TGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 113 ~~~~~~---------~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
..+... ..+......+..+|||+||.|||+|
T Consensus 79 ~~d~~~~~~~~~~~v~~~~~~v~~fi~f~Kplia~vNGPA 118 (266)
T KOG0016|consen 79 DDDANEESDKASKFVKNVSCFVNTFINFPKPLVALVNGPA 118 (266)
T ss_pred CCcccccchhhHHHHHHHHHHHHHHhcCCCCEEEEecCCc
Confidence 322111 1122256889999999999999997
No 89
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=99.75 E-value=4e-18 Score=126.23 Aligned_cols=108 Identities=32% Similarity=0.428 Sum_probs=87.1
Q ss_pred cCCCcccEEEEEecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcC---CCCccCCCCcchhhh
Q psy9280 34 STVKFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGN---EKAFAAGADIKEMLN 110 (143)
Q Consensus 34 ~~~~~~~v~ve~~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~---g~~FsaG~Dl~~~~~ 110 (143)
....|+.|.+++.. ++|+.|++|||+++|++.+..+.||.++|..+..|+++.+|||||. ++.||+|+|-+....
T Consensus 13 ~~~~y~dI~Y~~~~--~giakItinRPevrNAfrP~TV~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~ 90 (282)
T COG0447 13 GFEGYEDITYEKSV--DGIAKITINRPEVRNAFRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGD 90 (282)
T ss_pred hcCCcceeEEeecc--CceEEEEecChhhhccCCCccHHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceeccc
Confidence 44578999999972 3999999999999999999999999999999999999999999973 488999999877554
Q ss_pred h-h--hh-hhHHhHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 111 Q-T--YA-ANVKTGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 111 ~-~--~~-~~~~~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
. . .+ ..-.-....+-+.|..+||||||.|+|+|
T Consensus 91 ~~gY~~d~~~~rLnvLdlQrlIR~~PKpViA~V~G~A 127 (282)
T COG0447 91 SGGYVDDDGIPRLNVLDLQRLIRTMPKPVIAMVAGYA 127 (282)
T ss_pred CCCccCCccCcccchhhHHHHHHhCCcceEEEEeeEe
Confidence 2 1 11 11112334445678899999999999975
No 90
>KOG1682|consensus
Probab=99.71 E-value=5.1e-17 Score=119.52 Aligned_cols=111 Identities=27% Similarity=0.330 Sum_probs=88.0
Q ss_pred hhhcccCCCcccEEEEEecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchh
Q psy9280 29 IIKYMSTVKFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEM 108 (143)
Q Consensus 29 ~r~~~~~~~~~~v~ve~~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~ 108 (143)
.|-++..+.+. ..++.++ +|-.|+|++|+|+|.++.+|+.+|.+.+....+..++|+|||+..|+.||+|.||+++
T Consensus 23 aRf~s~~p~~~-g~~~~~~---gvR~i~l~npKk~NtLSLaM~~~Lq~~ll~d~d~~dlr~viita~GkifSaGH~LKEL 98 (287)
T KOG1682|consen 23 ARFTSNGPSDL-GLVKEHN---GVREITLNNPKKLNTLSLAMMCALQDALLKDKDNLDLRCVIITAQGKIFSAGHNLKEL 98 (287)
T ss_pred HHHhhcCcccc-ccccccc---ceeeeeecCccccchhhHHHHHHHHHHHhhcccccceeEEEEecCCccccccccHHHh
Confidence 34444444333 3344333 8999999999999999999999999999999888899999999999999999999999
Q ss_pred hhhhhhhhHHh---HHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 109 LNQTYAANVKT---GLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 109 ~~~~~~~~~~~---~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
......+.-.+ ..-+++.-|.++|+|+|+.|||.|
T Consensus 99 t~e~g~d~haevFqtc~dvmn~Irn~pVPVia~VNG~A 136 (287)
T KOG1682|consen 99 TNEPGSDIHAEVFQTCTDVMNDIRNLPVPVIAKVNGYA 136 (287)
T ss_pred hcCccchHHHHHHHHHHHHHHHHhcCCCceEEEecchh
Confidence 87653332222 233456888999999999999975
No 91
>KOG1684|consensus
Probab=99.66 E-value=6.4e-16 Score=121.49 Aligned_cols=104 Identities=28% Similarity=0.402 Sum_probs=84.9
Q ss_pred CCcccEEEEEecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcC-CCCccCCCCcchhhhhhhh
Q psy9280 36 VKFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGN-EKAFAAGADIKEMLNQTYA 114 (143)
Q Consensus 36 ~~~~~v~ve~~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~-g~~FsaG~Dl~~~~~~~~~ 114 (143)
....+|.++..+ ....|+||||+++|+++.+|...+.-.|.+++.++.+++||+-|. |++||+|+|++.......+
T Consensus 35 ~~~~~VL~e~~~---~~r~itLNRPKaLNAlnleMv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~~d 111 (401)
T KOG1684|consen 35 DSKDQVLVEGKG---CARVITLNRPKALNALNLEMVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESIKD 111 (401)
T ss_pred ccCCceEEecCC---ceeEEEecCchhhccccHHHHHHHHHHHHhhccCCCceEEEEecCCCceeecCccHHHHHHHhhc
Confidence 334678888877 899999999999999999999999999999999999999999885 7999999999865433221
Q ss_pred hh------HHhHHHHHHHHHhcCCCcEEEEEecC
Q psy9280 115 AN------VKTGLLEHWDNITKAKKPVIAAVNGY 142 (143)
Q Consensus 115 ~~------~~~~~~~~~~~l~~~~kP~IAav~G~ 142 (143)
.. +-.....+...+....||.||.++|.
T Consensus 112 ~~~~~~~~fF~~eYsl~~~igtY~KP~ValmdGI 145 (401)
T KOG1684|consen 112 KETPEVKKFFTEEYSLNHLIGTYLKPYVALMDGI 145 (401)
T ss_pred CCchHHHHHHHHHHHHHHHHHHhcCceEEEeece
Confidence 11 11233344578899999999999996
No 92
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=98.83 E-value=1.6e-08 Score=75.56 Aligned_cols=78 Identities=23% Similarity=0.258 Sum_probs=58.6
Q ss_pred EEEEEEcCC--CCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchhhhhhhhhhHHhHHHHHHHHHh
Q psy9280 52 VGLVQLNRP--KSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQTYAANVKTGLLEHWDNIT 129 (143)
Q Consensus 52 V~~I~ln~p--~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~ 129 (143)
|++|.++.+ +..+..+.-.+++|.++|+++..|+++++|||+ .||.|+|+..+. .+.+.+..+.
T Consensus 2 i~v~~~~g~i~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~----~~s~Gg~~~~~~----------~~~~~l~~~~ 67 (211)
T cd07019 2 IGVVFANGAIVDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLR----VNSPGGSVTASE----------VIRAELAAAR 67 (211)
T ss_pred EEEEEEEEEEeCCCCCCCccCHHHHHHHHHHHhhCCCceEEEEE----EcCCCcCHHHHH----------HHHHHHHHHH
Confidence 555555532 112333455689999999999999999999998 699999997752 2234466778
Q ss_pred cCCCcEEEEEecCC
Q psy9280 130 KAKKPVIAAVNGYA 143 (143)
Q Consensus 130 ~~~kP~IAav~G~a 143 (143)
.++||+||+++|.|
T Consensus 68 ~~~kpVia~v~g~a 81 (211)
T cd07019 68 AAGKPVVVSAGGAA 81 (211)
T ss_pred hCCCCEEEEECCee
Confidence 89999999999985
No 93
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=98.67 E-value=8.4e-08 Score=69.75 Aligned_cols=61 Identities=26% Similarity=0.269 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchhhhhhhhhhHHhHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 69 ALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQTYAANVKTGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 69 ~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
-.+++|.++++++++|+++|+|||++ ||.|.|+... ..+.+.+..+..++||+||+++|.|
T Consensus 22 ~~~~~l~~~l~~a~~d~~v~~vvl~~----~~~gg~~~~~----------~~~~~~i~~~~~~~kpVia~v~G~a 82 (177)
T cd07014 22 VSGDTTAAQIRDARLDPKVKAIVLRV----NSPGGSVTAS----------EVIRAELAAARAAGKPVVASGGGNA 82 (177)
T ss_pred cCHHHHHHHHHHHhcCCCceEEEEEe----eCCCcCHHHH----------HHHHHHHHHHHhCCCCEEEEECCch
Confidence 35789999999999999999999997 6889887642 1234456778889999999999986
No 94
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=98.44 E-value=7.4e-07 Score=66.35 Aligned_cols=76 Identities=21% Similarity=0.300 Sum_probs=57.1
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchhhhhhhhhhHHhHHHHHHHHHhcC
Q psy9280 52 VGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQTYAANVKTGLLEHWDNITKA 131 (143)
Q Consensus 52 V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~ 131 (143)
|++|.++.+=... +..++.+|.++|++++.|+++++|++++ +|.|+|+... ..+.+.+..+..+
T Consensus 2 v~vi~i~g~i~~~--~~~~~~~l~~~l~~a~~d~~i~~ivl~~----~s~Gg~~~~~----------~~i~~~i~~~~~~ 65 (208)
T cd07023 2 IAVIDIEGTISDG--GGIGADSLIEQLRKAREDDSVKAVVLRI----NSPGGSVVAS----------EEIYREIRRLRKA 65 (208)
T ss_pred EEEEEEEEEEcCC--CCCCHHHHHHHHHHHHhCCCCcEEEEEE----ECCCCCHHHH----------HHHHHHHHHHHhc
Confidence 5566665321000 3678999999999999999999999988 5788888652 1234456778888
Q ss_pred CCcEEEEEecCC
Q psy9280 132 KKPVIAAVNGYA 143 (143)
Q Consensus 132 ~kP~IAav~G~a 143 (143)
+||+||+++|.|
T Consensus 66 ~kpvia~v~g~~ 77 (208)
T cd07023 66 KKPVVASMGDVA 77 (208)
T ss_pred CCcEEEEECCcc
Confidence 999999999976
No 95
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=98.42 E-value=1.7e-06 Score=64.74 Aligned_cols=70 Identities=30% Similarity=0.297 Sum_probs=50.2
Q ss_pred CCCCCCC-CCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchhhhhhhhhhHHhHHHHHHHHHhcCCCcEEE
Q psy9280 59 RPKSLNA-LCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQTYAANVKTGLLEHWDNITKAKKPVIA 137 (143)
Q Consensus 59 ~p~~~Na-l~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~IA 137 (143)
++...|+ ++..++.+|.++|++++.|+++++|||+. +|.|+++... ..+.+.+..+.. +||+||
T Consensus 14 ~~~~~~~~~~~~~~~~l~~~l~~a~~d~~i~~Vvl~~----~s~gg~~~~~----------~~l~~~l~~~~~-~KpViA 78 (214)
T cd07022 14 RGSWLEASSGLTSYEGIAAAIRAALADPDVRAIVLDI----DSPGGEVAGV----------FELADAIRAARA-GKPIVA 78 (214)
T ss_pred CCCcccCCCCcccHHHHHHHHHHHhhCCCCcEEEEEE----eCCCCcHHHH----------HHHHHHHHHHhc-CCCEEE
Confidence 4444454 45689999999999999999999999975 5566554331 123344444445 699999
Q ss_pred EEecCC
Q psy9280 138 AVNGYA 143 (143)
Q Consensus 138 av~G~a 143 (143)
+++|.|
T Consensus 79 ~v~g~a 84 (214)
T cd07022 79 FVNGLA 84 (214)
T ss_pred EECCch
Confidence 999975
No 96
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=97.89 E-value=3e-05 Score=55.22 Aligned_cols=61 Identities=33% Similarity=0.424 Sum_probs=47.6
Q ss_pred CCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchhhhhhhhhhHHhHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 66 LCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQTYAANVKTGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 66 l~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
++..++++|.+.|+.++.|+.+++|+|.. .|.|+|+.. ...+...|..++||+|+.++|.|
T Consensus 8 I~~~~~~~l~~~l~~a~~d~~~~~ivl~~----~s~Gg~~~~-------------~~~i~~~l~~~~kpvva~~~g~~ 68 (161)
T cd00394 8 IEDVSADQLAAQIRFAEADNSVKAIVLEV----NTPGGRVDA-------------GMNIVDALQASRKPVIAYVGGQA 68 (161)
T ss_pred EccchHHHHHHHHHHHHhCCCCceEEEEE----ECCCcCHHH-------------HHHHHHHHHHhCCCEEEEECChh
Confidence 45578899999999999999999999975 466665532 23345567778899999999875
No 97
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=97.88 E-value=3.5e-05 Score=58.02 Aligned_cols=64 Identities=22% Similarity=0.340 Sum_probs=50.0
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchhhhhhhhhhHHhHHHHHHHHHhcCCCcEEEEEecC
Q psy9280 65 ALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQTYAANVKTGLLEHWDNITKAKKPVIAAVNGY 142 (143)
Q Consensus 65 al~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~IAav~G~ 142 (143)
.-+...+.+|.+.|+++..|+.+++|||+..+..| ++.++.++ .+.+..+...+||+||.++|.
T Consensus 25 ~~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg-~~~~~~el-------------~~~i~~~~~~~kpVia~~~~~ 88 (222)
T cd07018 25 ESSELSLRDLLEALEKAAEDDRIKGIVLDLDGLSG-GLAKLEEL-------------RQALERFRASGKPVIAYADGY 88 (222)
T ss_pred CcCCccHHHHHHHHHHHhcCCCeEEEEEECCCCCC-CHHHHHHH-------------HHHHHHHHHhCCeEEEEeCCC
Confidence 34567789999999999999999999999877666 55555554 344455666799999999874
No 98
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=97.86 E-value=5.1e-05 Score=56.53 Aligned_cols=69 Identities=22% Similarity=0.428 Sum_probs=48.2
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchhhhhhhhhhHHhHHHHHHHHHhcC
Q psy9280 52 VGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQTYAANVKTGLLEHWDNITKA 131 (143)
Q Consensus 52 V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~ 131 (143)
|++|.++.+= + ...++|.++|+++..|+++++|||+.. |.|+++... ..+...|.++
T Consensus 2 v~vi~i~g~i-----~-~s~~~l~~~l~~a~~d~~i~~vvl~~~----s~Gg~~~~~-------------~~l~~~i~~~ 58 (207)
T TIGR00706 2 IAILPVSGAI-----A-VSPEDFDKKIKRIKDDKSIKALLLRIN----SPGGTVVAS-------------EEIYEKLKKL 58 (207)
T ss_pred EEEEEEEEEE-----e-cCHHHHHHHHHHHhhCCCccEEEEEec----CCCCCHHHH-------------HHHHHHHHHh
Confidence 5566665431 1 235689999999999999999999873 667666532 2234455555
Q ss_pred C--CcEEEEEecCC
Q psy9280 132 K--KPVIAAVNGYA 143 (143)
Q Consensus 132 ~--kP~IAav~G~a 143 (143)
+ ||+||.++|.|
T Consensus 59 ~~~kpvia~v~g~a 72 (207)
T TIGR00706 59 KAKKPVVASMGGVA 72 (207)
T ss_pred cCCCCEEEEECCcc
Confidence 5 99999999975
No 99
>KOG1683|consensus
Probab=97.36 E-value=8.9e-05 Score=59.39 Aligned_cols=92 Identities=15% Similarity=0.070 Sum_probs=78.0
Q ss_pred CcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcC-CCCccCCCCcchhhhhhhh--hhHHhHHHHHHH
Q psy9280 50 KNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGN-EKAFAAGADIKEMLNQTYA--ANVKTGLLEHWD 126 (143)
Q Consensus 50 ~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~-g~~FsaG~Dl~~~~~~~~~--~~~~~~~~~~~~ 126 (143)
.++..+.|+ |+ .|..|.++.++|..-+++++.+..+++..+|+- -+.|++|.|..+....... ...+-++++.+.
T Consensus 65 ~~~~~~dmv-ie-av~edl~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~fspa~~m~LlEii~ 142 (380)
T KOG1683|consen 65 TGFANADMV-IE-AVFEDLELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHFFSPAHWMQLLEIIL 142 (380)
T ss_pred cccccccee-cc-chhhhHHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhccccccCHHHHHHHHHHHH
Confidence 378888888 66 699999999999999999999999999999885 5899999999998765432 223467889999
Q ss_pred HHhcCCCcEEEEEecCC
Q psy9280 127 NITKAKKPVIAAVNGYA 143 (143)
Q Consensus 127 ~l~~~~kP~IAav~G~a 143 (143)
..+.++.|+.+|+||++
T Consensus 143 ~~~tS~~~iA~Ain~~~ 159 (380)
T KOG1683|consen 143 ALYTSKLTIATAINGGS 159 (380)
T ss_pred hcCCCchHHHHHHhccc
Confidence 99999999999999874
No 100
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=97.18 E-value=0.0016 Score=55.70 Aligned_cols=78 Identities=24% Similarity=0.318 Sum_probs=54.2
Q ss_pred CCcEEEEEEcCCC--CCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcC---CCCccCCCCcchhhhhhhhhhHHhHHHH
Q psy9280 49 NKNVGLVQLNRPK--SLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGN---EKAFAAGADIKEMLNQTYAANVKTGLLE 123 (143)
Q Consensus 49 ~~~V~~I~ln~p~--~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~---g~~FsaG~Dl~~~~~~~~~~~~~~~~~~ 123 (143)
++.|++|.++.+= ..+..+....+.+.+.++++..|+++++|||+-+ |..|++ +.+.+
T Consensus 307 ~~~vavI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~VkaIVLrinSpGGs~~as-----------------e~i~~ 369 (584)
T TIGR00705 307 QDKIGIVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRINSPGGSVFAS-----------------EIIRR 369 (584)
T ss_pred CCeEEEEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCceEEEEEecCCCCCHHHH-----------------HHHHH
Confidence 3489999998642 2344444456678889999999999999999842 233321 12234
Q ss_pred HHHHHhcCCCcEEEEEecCC
Q psy9280 124 HWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 124 ~~~~l~~~~kP~IAav~G~a 143 (143)
.+.++...+||+|+.++|.|
T Consensus 370 ~i~~~~~~gKPVva~~~g~a 389 (584)
T TIGR00705 370 ELARAQARGKPVIVSMGAMA 389 (584)
T ss_pred HHHHHHhCCCcEEEEECCcc
Confidence 45556777899999999976
No 101
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=96.96 E-value=0.003 Score=46.27 Aligned_cols=67 Identities=18% Similarity=0.224 Sum_probs=44.9
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEE-cCCCCccCCCCcchhhhhhhhhhHHhHHHHHHHHHhcC
Q psy9280 53 GLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLT-GNEKAFAAGADIKEMLNQTYAANVKTGLLEHWDNITKA 131 (143)
Q Consensus 53 ~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVlt-g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~ 131 (143)
++|+++. .++..+...+.+.++.++.++ ++.|+|. ..++ +++.. ...++..|..+
T Consensus 2 ~vv~i~g-----~I~~~~~~~l~~~l~~a~~~~-~~~vvl~InSpG-----G~v~~-------------~~~i~~~l~~~ 57 (187)
T cd07020 2 YVLEING-----AITPATADYLERAIDQAEEGG-ADALIIELDTPG-----GLLDS-------------TREIVQAILAS 57 (187)
T ss_pred EEEEEee-----EEChHHHHHHHHHHHHHHhCC-CCEEEEEEECCC-----CCHHH-------------HHHHHHHHHhC
Confidence 4566653 256677788999999998665 6777775 4322 12211 12445667789
Q ss_pred CCcEEEEEe---cCC
Q psy9280 132 KKPVIAAVN---GYA 143 (143)
Q Consensus 132 ~kP~IAav~---G~a 143 (143)
|||+|++|+ |+|
T Consensus 58 ~kPvia~v~~~~G~A 72 (187)
T cd07020 58 PVPVVVYVYPSGARA 72 (187)
T ss_pred CCCEEEEEecCCCCc
Confidence 999999999 886
No 102
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=95.72 E-value=0.047 Score=39.85 Aligned_cols=58 Identities=28% Similarity=0.294 Sum_probs=41.3
Q ss_pred CCHHHHHHHHHHHHHHhcCCCeeEEEEE--cCCCCccCCCCcchhhhhhhhhhHHhHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 66 LCDALVSEVAAAVQQFDQDSSVAAIVLT--GNEKAFAAGADIKEMLNQTYAANVKTGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 66 l~~~~~~el~~~l~~~~~d~~vr~vVlt--g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
++....+.+.++|+++++++ +..|++. ..|+ ++ ......+..|..+++|+|+.|+|.|
T Consensus 10 I~~~~~~~l~~~l~~a~~~~-~~~ivl~inspGG------~v-------------~~~~~I~~~l~~~~~pvva~V~g~A 69 (178)
T cd07021 10 IDPGLAAFVERALKEAKEEG-ADAVVLDIDTPGG------RV-------------DSALEIVDLILNSPIPTIAYVNDRA 69 (178)
T ss_pred ECHHHHHHHHHHHHHHHhCC-CCeEEEEEECcCC------CH-------------HHHHHHHHHHHhCCCCEEEEECCch
Confidence 55677788999999998776 6777764 2221 11 1234556778889999999999976
No 103
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=94.70 E-value=0.054 Score=38.43 Aligned_cols=55 Identities=18% Similarity=0.301 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchhhhhhhhhhHHhHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 69 ALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQTYAANVKTGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 69 ~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
...+++.+.|+.++.++.+ .+.|.+.|+...+ ...+++.|..+++|+|+.++|.|
T Consensus 15 ~~~~~~~~~l~~~~~~~~i-~l~inspGG~~~~-------------------~~~i~~~i~~~~~pvi~~v~g~a 69 (160)
T cd07016 15 VTAKEFKDALDALGDDSDI-TVRINSPGGDVFA-------------------GLAIYNALKRHKGKVTVKIDGLA 69 (160)
T ss_pred cCHHHHHHHHHhccCCCCE-EEEEECCCCCHHH-------------------HHHHHHHHHhcCCCEEEEEcchH
Confidence 4677888888888877443 3444444432211 13456677888999999999976
No 104
>PRK10949 protease 4; Provisional
Probab=93.31 E-value=1.1 Score=38.88 Aligned_cols=77 Identities=23% Similarity=0.305 Sum_probs=49.5
Q ss_pred CcEEEEEEcCC-----CCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchhhhhhhhhhHHhHHHHH
Q psy9280 50 KNVGLVQLNRP-----KSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQTYAANVKTGLLEH 124 (143)
Q Consensus 50 ~~V~~I~ln~p-----~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~ 124 (143)
+.|++|.++.. .....++. +.+.+.|+++..|+++++|||+=+. .|+. .... +.+.+.
T Consensus 326 ~~Iavi~~~G~I~~g~~~~g~~~~---~~~~~~l~~a~~D~~vkaVvLrInS----pGGs------~~as----e~i~~~ 388 (618)
T PRK10949 326 GSIAVIFANGAIMDGEETPGNVGG---DTTAAQIRDARLDPKVKAIVLRVNS----PGGS------VTAS----EVIRAE 388 (618)
T ss_pred CeEEEEEEEEEEcCCCCcCCCcCH---HHHHHHHHHHHhCCCCcEEEEEecC----CCCc------HHHH----HHHHHH
Confidence 47999888731 12234444 4678888899999999999997421 1110 0111 344555
Q ss_pred HHHHhcCCCcEEEEEecCC
Q psy9280 125 WDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 125 ~~~l~~~~kP~IAav~G~a 143 (143)
+.++....||+||.+.|.|
T Consensus 389 i~~~r~~gKPVvas~~~~a 407 (618)
T PRK10949 389 LAAARAAGKPVVVSMGGMA 407 (618)
T ss_pred HHHHHhcCCcEEEEECCCC
Confidence 5666677899999987764
No 105
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=93.24 E-value=0.25 Score=38.96 Aligned_cols=59 Identities=17% Similarity=0.288 Sum_probs=38.4
Q ss_pred CCHHHHHHHHHHHHHHhcCC---CeeEEEE-EcCCCCccCCCCcchhhhhhhhhhHHhHHHHHHHHHhcCCCcEEEEE
Q psy9280 66 LCDALVSEVAAAVQQFDQDS---SVAAIVL-TGNEKAFAAGADIKEMLNQTYAANVKTGLLEHWDNITKAKKPVIAAV 139 (143)
Q Consensus 66 l~~~~~~el~~~l~~~~~d~---~vr~vVl-tg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~IAav 139 (143)
-+..--.++.+++..+.... .+-+||| +|+| .+.++....+ ..+.+++..+|.|||++|
T Consensus 52 QG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGG-------s~eDL~~FN~--------e~varai~~~~~PvisaI 114 (319)
T PF02601_consen 52 QGEGAAASIVSALRKANEMGQADDFDVIIIIRGGG-------SIEDLWAFND--------EEVARAIAASPIPVISAI 114 (319)
T ss_pred cccchHHHHHHHHHHHHhccccccccEEEEecCCC-------ChHHhcccCh--------HHHHHHHHhCCCCEEEec
Confidence 34456678888888887654 5667777 4544 2233222211 244678999999999997
No 106
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=92.60 E-value=0.33 Score=40.24 Aligned_cols=61 Identities=11% Similarity=0.203 Sum_probs=39.9
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchhhhhhhhhhHHhHHHHHHHHHhcCCCcEEEEE
Q psy9280 65 ALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQTYAANVKTGLLEHWDNITKAKKPVIAAV 139 (143)
Q Consensus 65 al~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~IAav 139 (143)
.-+.....++.++++.+....++-+|||.-+|+. +.++..-.+ ..+.+++..+|.|||++|
T Consensus 166 vQG~~a~~~i~~al~~~~~~~~~dviii~RGGGs------~eDL~~Fn~--------e~~~rai~~~~~Pvis~i 226 (432)
T TIGR00237 166 VQGEGAVQSIVESIELANTKNECDVLIVGRGGGS------LEDLWSFND--------EKVARAIFLSKIPIISAV 226 (432)
T ss_pred ccCccHHHHHHHHHHHhhcCCCCCEEEEecCCCC------HHHhhhcCc--------HHHHHHHHcCCCCEEEec
Confidence 3455667788899988887666777887433332 222222221 244578999999999997
No 107
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=91.30 E-value=0.56 Score=38.95 Aligned_cols=57 Identities=21% Similarity=0.365 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHhcCCCeeEEEE-EcCCCCccCCCCcchhhhhhhhhhHHhHHHHHHHHHhcCCCcEEEEE
Q psy9280 68 DALVSEVAAAVQQFDQDSSVAAIVL-TGNEKAFAAGADIKEMLNQTYAANVKTGLLEHWDNITKAKKPVIAAV 139 (143)
Q Consensus 68 ~~~~~el~~~l~~~~~d~~vr~vVl-tg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~IAav 139 (143)
..--.++.++++.+++..++.++|+ +|+| -++++..-.++ .+.++++.+++|+|++|
T Consensus 175 ~~A~~eIv~aI~~an~~~~~DvlIVaRGGG-------SiEDLW~FNdE--------~vaRAi~~s~iPvISAV 232 (440)
T COG1570 175 EGAAEEIVEAIERANQRGDVDVLIVARGGG-------SIEDLWAFNDE--------IVARAIAASRIPVISAV 232 (440)
T ss_pred CCcHHHHHHHHHHhhccCCCCEEEEecCcc-------hHHHHhccChH--------HHHHHHHhCCCCeEeec
Confidence 3456688888888888887888888 4533 33333322222 34578999999999998
No 108
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=90.32 E-value=0.7 Score=38.14 Aligned_cols=58 Identities=16% Similarity=0.283 Sum_probs=37.3
Q ss_pred CCHHHHHHHHHHHHHHhcCCCeeEEEE-EcCCCCccCCCCcchhhhhhhhhhHHhHHHHHHHHHhcCCCcEEEEE
Q psy9280 66 LCDALVSEVAAAVQQFDQDSSVAAIVL-TGNEKAFAAGADIKEMLNQTYAANVKTGLLEHWDNITKAKKPVIAAV 139 (143)
Q Consensus 66 l~~~~~~el~~~l~~~~~d~~vr~vVl-tg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~IAav 139 (143)
-+...-.++.+++..+.... +-+||| +|+| . +.++..-.+ ..+.+++..+|.|||++|
T Consensus 173 QG~~A~~~i~~al~~~~~~~-~Dviii~RGGG-S------~eDL~~Fn~--------e~v~~ai~~~~~Pvis~I 231 (438)
T PRK00286 173 QGEGAAASIVAAIERANARG-EDVLIVARGGG-S------LEDLWAFND--------EAVARAIAASRIPVISAV 231 (438)
T ss_pred cCccHHHHHHHHHHHhcCCC-CCEEEEecCCC-C------HHHhhccCc--------HHHHHHHHcCCCCEEEec
Confidence 44456778888888887643 556766 5543 2 233322221 244678999999999997
No 109
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=86.54 E-value=2.6 Score=36.35 Aligned_cols=61 Identities=18% Similarity=0.242 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchhhhhhhhhhHHhHHHHHHHHHhcCCCcEEEEEecC
Q psy9280 69 ALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQTYAANVKTGLLEHWDNITKAKKPVIAAVNGY 142 (143)
Q Consensus 69 ~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~IAav~G~ 142 (143)
-.+.++.++++++..|+.|++|||.-.+ +.|..+.. .+.+.+.+..+....|||||..++.
T Consensus 76 ~~l~~i~~~i~~A~~D~~IkgIvL~i~~---~~g~~~~~----------~~ei~~ai~~fk~sgKpVvA~~~~~ 136 (584)
T TIGR00705 76 ISLFDIVNAIRQAADDRRIEGLVFDLSN---FSGWDSPH----------LVEIGSALSEFKDSGKPVYAYGTNY 136 (584)
T ss_pred cCHHHHHHHHHHHhcCCCceEEEEEccC---CCCCCHHH----------HHHHHHHHHHHHhcCCeEEEEEccc
Confidence 3567999999999999999999997532 11222211 1234555566667789999976654
No 110
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=84.76 E-value=4.3 Score=28.95 Aligned_cols=59 Identities=20% Similarity=0.242 Sum_probs=40.7
Q ss_pred CCHHHHHHHHHHHHHHhcCCCeeEEEE--EcCCCCccCCCCcchhhhhhhhhhHHhHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 66 LCDALVSEVAAAVQQFDQDSSVAAIVL--TGNEKAFAAGADIKEMLNQTYAANVKTGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 66 l~~~~~~el~~~l~~~~~d~~vr~vVl--tg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
++..+.+++.+.|..++.++..+.|+| .+.|+ ++ ......+..|..+++|+++.+.|.|
T Consensus 9 I~~~~~~~~~~~L~~l~~~~~~~~i~l~InSpGG------~v-------------~~~~~i~~~i~~~~~~v~~~~~g~a 69 (162)
T cd07013 9 VEDISANQFAAQLLFLGAVNPEKDIYLYINSPGG------DV-------------FAGMAIYDTIKFIKADVVTIIDGLA 69 (162)
T ss_pred ECcHHHHHHHHHHHHHhcCCCCCCEEEEEECCCC------cH-------------HHHHHHHHHHHhcCCCceEEEEeeh
Confidence 467888999999999998876666666 34443 21 1233456667778888998888865
No 111
>PRK10949 protease 4; Provisional
Probab=82.86 E-value=4.4 Score=35.28 Aligned_cols=59 Identities=22% Similarity=0.258 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchhhhhhhhhhHHhHHHHHHHHHhcCCCcEEEEEe
Q psy9280 69 ALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQTYAANVKTGLLEHWDNITKAKKPVIAAVN 140 (143)
Q Consensus 69 ~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~IAav~ 140 (143)
-.+.++.++++++..|+.|++|||.-.+.. |..+. . .+.+.+.+..+....||+||.-+
T Consensus 95 ~~l~div~~i~~Aa~D~rIkgivL~i~s~g---G~~~a------~----~~eI~~ai~~fk~sGKpVvA~~~ 153 (618)
T PRK10949 95 NSLFDIVNTIRQAKDDRNITGIVLDLKNFA---GADQP------S----MQYIGKALREFRDSGKPVYAVGD 153 (618)
T ss_pred ccHHHHHHHHHHHhcCCCceEEEEEeCCCC---CccHH------H----HHHHHHHHHHHHHhCCeEEEEec
Confidence 345689999999999999999999753210 11110 0 02345556666677899998543
No 112
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=82.35 E-value=5.2 Score=31.52 Aligned_cols=50 Identities=26% Similarity=0.398 Sum_probs=33.1
Q ss_pred HHHHHHHhcCCCeeEEEEEcC-CCCccCCCCcchhhhhhhhhhHHhHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 75 AAAVQQFDQDSSVAAIVLTGN-EKAFAAGADIKEMLNQTYAANVKTGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 75 ~~~l~~~~~d~~vr~vVltg~-g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
.++|+.+++|++.++||+-|. |+ ..+ +...+.+.+ ....||+||.+-|.+
T Consensus 189 id~L~~fe~Dp~T~~ivmiGEiGG-------------~aE-----e~AA~~i~~-~~~~KPVVa~iaG~t 239 (293)
T COG0074 189 IDALEMFEADPETEAIVMIGEIGG-------------PAE-----EEAAEYIKA-NATRKPVVAYIAGRT 239 (293)
T ss_pred HHHHHHHhcCccccEEEEEecCCC-------------cHH-----HHHHHHHHH-hccCCCEEEEEeccC
Confidence 367888899999999999885 21 111 122333444 344599999998863
No 113
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=79.45 E-value=8.1 Score=26.95 Aligned_cols=51 Identities=22% Similarity=0.284 Sum_probs=29.9
Q ss_pred HHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchhhhhhhhhhHHhHHHHHHHHHhcCCCcEEEEEecC
Q psy9280 73 EVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQTYAANVKTGLLEHWDNITKAKKPVIAAVNGY 142 (143)
Q Consensus 73 el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~IAav~G~ 142 (143)
.+.+.++.+.+|+++++|++.-++ + .+. +.+.+..++.... ||+|+..-|.
T Consensus 41 ~~~d~l~~~~~D~~t~~I~ly~E~-----------~---~d~----~~f~~~~~~a~~~-KPVv~lk~Gr 91 (138)
T PF13607_consen 41 DFADLLEYLAEDPDTRVIVLYLEG-----------I---GDG----RRFLEAARRAARR-KPVVVLKAGR 91 (138)
T ss_dssp -HHHHHHHHCT-SS--EEEEEES----------------S-H----HHHHHHHHHHCCC-S-EEEEE---
T ss_pred CHHHHHHHHhcCCCCCEEEEEccC-----------C---CCH----HHHHHHHHHHhcC-CCEEEEeCCC
Confidence 467788888889999999987542 1 111 3566667777766 9999987663
No 114
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=78.86 E-value=11 Score=27.34 Aligned_cols=58 Identities=19% Similarity=0.172 Sum_probs=38.0
Q ss_pred CCHHHHHHHHHHHHHHhcCCCeeEEEEE--cCCCCccCCCCcchhhhhhhhhhHHhHHHHHHHHHhcCCCcEEEEEe---
Q psy9280 66 LCDALVSEVAAAVQQFDQDSSVAAIVLT--GNEKAFAAGADIKEMLNQTYAANVKTGLLEHWDNITKAKKPVIAAVN--- 140 (143)
Q Consensus 66 l~~~~~~el~~~l~~~~~d~~vr~vVlt--g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~IAav~--- 140 (143)
++..+...|.+.+++++++ ..+.|+|. ..|+ .+.. ....+..|...++||++.+.
T Consensus 10 I~~~~~~~l~~~l~~A~~~-~~~~i~l~inSPGG------~v~~-------------~~~I~~~i~~~~~pvv~~v~p~g 69 (172)
T cd07015 10 ITSYTYDQFDRYITIAEQD-NAEAIIIELDTPGG------RADA-------------AGNIVQRIQQSKIPVIIYVYPPG 69 (172)
T ss_pred ECHhHHHHHHHHHHHHhcC-CCCeEEEEEECCCC------CHHH-------------HHHHHHHHHhcCcCEEEEEecCC
Confidence 5667777888899988765 46777774 2232 2221 12335566678999999998
Q ss_pred cCC
Q psy9280 141 GYA 143 (143)
Q Consensus 141 G~a 143 (143)
|.|
T Consensus 70 ~~A 72 (172)
T cd07015 70 ASA 72 (172)
T ss_pred Cee
Confidence 654
No 115
>PLN02522 ATP citrate (pro-S)-lyase
Probab=74.46 E-value=11 Score=32.80 Aligned_cols=50 Identities=26% Similarity=0.353 Sum_probs=30.6
Q ss_pred HHHHHHHHhcCCCeeEEEEEcC-CCCccCCCCcchhhhhhhhhhHHhHHHHHHHHHhcCCCcEEEEEecC
Q psy9280 74 VAAAVQQFDQDSSVAAIVLTGN-EKAFAAGADIKEMLNQTYAANVKTGLLEHWDNITKAKKPVIAAVNGY 142 (143)
Q Consensus 74 l~~~l~~~~~d~~vr~vVltg~-g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~IAav~G~ 142 (143)
+.+.|+.+++|++.++|++-++ |. ..+ +.+.+..++.. ..||+|+.+-|.
T Consensus 210 ~~D~L~~~~~Dp~Tk~IvlygEiGg--------------~~e----~~f~ea~~~a~-~~KPVVa~kaGr 260 (608)
T PLN02522 210 LSDHVLRFNNIPQIKMIVVLGELGG--------------RDE----YSLVEALKQGK-VSKPVVAWVSGT 260 (608)
T ss_pred HHHHHHHHhcCCCCCEEEEEEecCc--------------hhH----HHHHHHHHHhc-CCCCEEEEeccC
Confidence 4555666667777777777664 32 111 23444444444 789999998775
No 116
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=70.90 E-value=16 Score=29.16 Aligned_cols=22 Identities=23% Similarity=0.436 Sum_probs=16.3
Q ss_pred HHHHHHHHhcCCCeeEEEEEcC
Q psy9280 74 VAAAVQQFDQDSSVAAIVLTGN 95 (143)
Q Consensus 74 l~~~l~~~~~d~~vr~vVltg~ 95 (143)
+.++|+.+++|++.++|++-++
T Consensus 212 ~~D~L~~~~~Dp~T~~Ivl~~E 233 (317)
T PTZ00187 212 FIDCLKLFLNDPETEGIILIGE 233 (317)
T ss_pred HHHHHHHHhhCCCccEEEEEEe
Confidence 5567777777888888888765
No 117
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=64.38 E-value=42 Score=23.94 Aligned_cols=59 Identities=20% Similarity=0.281 Sum_probs=37.8
Q ss_pred CCHHHHHHHHHHHHHHhcCCCeeEEEE--EcCCCCccCCCCcchhhhhhhhhhHHhHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 66 LCDALVSEVAAAVQQFDQDSSVAAIVL--TGNEKAFAAGADIKEMLNQTYAANVKTGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 66 l~~~~~~el~~~l~~~~~d~~vr~vVl--tg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
++.+...++...+..+..++..+.|++ .+.|+ |+ ......+..|...+.|+++.+.|.|
T Consensus 18 I~~~~~~~i~~~l~~~~~~~~~~~i~l~inSpGG------~v-------------~~~~~i~~~l~~~~~~v~t~~~g~a 78 (171)
T cd07017 18 IDDEVANLIIAQLLYLESEDPKKPIYLYINSPGG------SV-------------TAGLAIYDTMQYIKPPVSTICLGLA 78 (171)
T ss_pred EcHHHHHHHHHHHHHHHccCCCCceEEEEECCCC------CH-------------HHHHHHHHHHHhcCCCEEEEEEeEe
Confidence 567888899999999987765455544 34444 11 1122344555666788888888765
No 118
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=64.31 E-value=34 Score=26.24 Aligned_cols=54 Identities=15% Similarity=0.201 Sum_probs=38.5
Q ss_pred CcccEEEEEecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCc
Q psy9280 37 KFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAF 99 (143)
Q Consensus 37 ~~~~v~ve~~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~F 99 (143)
.|..+.+..-| .+. .++..+.+|.+.+..+...+.++... .+++-|+.|.|+.|
T Consensus 4 ~~~rillkLsG---e~l-----~g~~~~gid~~~i~~~a~~i~~~~~~-g~eV~iVvGGGni~ 57 (238)
T COG0528 4 KYMRILLKLSG---EAL-----AGEQGFGIDPEVLDRIANEIKELVDL-GVEVAVVVGGGNIA 57 (238)
T ss_pred ceEEEEEEeec---cee-----cCCCCCCCCHHHHHHHHHHHHHHHhc-CcEEEEEECCCHHH
Confidence 45556666554 222 23334779999999999999999755 57888888887766
No 119
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=63.25 E-value=25 Score=25.00 Aligned_cols=57 Identities=23% Similarity=0.214 Sum_probs=33.1
Q ss_pred HHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchhhhhhhhhhHHhHHHHHHHHH--hcCCCcEEEEEecC
Q psy9280 73 EVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQTYAANVKTGLLEHWDNI--TKAKKPVIAAVNGY 142 (143)
Q Consensus 73 el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~l--~~~~kP~IAav~G~ 142 (143)
...++|..+.+|+++++|++-+.+++= ..+.. ...+...+... ...++|+|+.|-|-
T Consensus 60 ~~~~~l~~~~~Dp~v~vIlvd~~~G~g------------~~~~~-A~~l~~a~~~~~~~~~~~pvVa~v~GT 118 (153)
T PF00549_consen 60 TRNEALEIEAADPEVKVILVDIVGGIG------------SCEDP-AAGLIPAIKEAKAEGRKKPVVARVCGT 118 (153)
T ss_dssp HHHHHHHHHHTSTTESEEEEEEESSSS------------SHHHH-HHHHHHHHSHCTHTTT-SEEEEEEEST
T ss_pred HHHHHHHHHhcCCCccEEEEEeccccC------------chHHH-HHHHHHHHHhccccCCCCcEEEEeeee
Confidence 456677788889999999997643210 11111 11222222221 45789999999884
No 120
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=62.83 E-value=27 Score=27.76 Aligned_cols=56 Identities=25% Similarity=0.389 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhcCCCeeEEEEE--cCCCCccCCCCcchhhhhhhhhhHHhHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 71 VSEVAAAVQQFDQDSSVAAIVLT--GNEKAFAAGADIKEMLNQTYAANVKTGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 71 ~~el~~~l~~~~~d~~vr~vVlt--g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
.+.+.+.|+++..++.+++|+|. +.|+ ... . .+...+.++++..-. |+++.|.++|
T Consensus 82 ~~~~~~~l~~~~~~~~vk~vvL~inSPGG------~v~-------a---s~~i~~~l~~l~~~~-PV~v~v~~~A 139 (317)
T COG0616 82 GDDIEEILRAARADPSVKAVVLRINSPGG------SVV-------A---SELIARALKRLRAKK-PVVVSVGGYA 139 (317)
T ss_pred HHHHHHHHHHHhcCCCCceEEEEEECcCC------chh-------H---HHHHHHHHHHHhhcC-CEEEEECCee
Confidence 45667777888889999999985 2222 111 1 134555566666555 9999998876
No 121
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=59.36 E-value=25 Score=26.08 Aligned_cols=59 Identities=19% Similarity=0.157 Sum_probs=37.6
Q ss_pred CCHHHHHHHHHHHHHHhcCCCeeEEEE--EcCCCCccCCCCcchhhhhhhhhhHHhHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 66 LCDALVSEVAAAVQQFDQDSSVAAIVL--TGNEKAFAAGADIKEMLNQTYAANVKTGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 66 l~~~~~~el~~~l~~~~~d~~vr~vVl--tg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
++..+.+++.+.|..++..+..+.|.+ -+.|+..- .....+..|..++.|+++.+.|.|
T Consensus 44 I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~-------------------~g~~I~d~i~~~~~~v~t~~~G~a 104 (207)
T PRK12553 44 VDDASANDVMAQLLVLESIDPDRDITLYINSPGGSVT-------------------AGDAIYDTIQFIRPDVQTVCTGQA 104 (207)
T ss_pred ECHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCCcHH-------------------HHHHHHHHHHhcCCCcEEEEEeeh
Confidence 778999999999999987543343433 34443211 123445666666778888877754
No 122
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=59.10 E-value=53 Score=24.20 Aligned_cols=60 Identities=18% Similarity=0.200 Sum_probs=38.1
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCeeEEEE--EcCCCCccCCCCcchhhhhhhhhhHHhHHHHHHHHHhcCCCcEEEEEecC
Q psy9280 65 ALCDALVSEVAAAVQQFDQDSSVAAIVL--TGNEKAFAAGADIKEMLNQTYAANVKTGLLEHWDNITKAKKPVIAAVNGY 142 (143)
Q Consensus 65 al~~~~~~el~~~l~~~~~d~~vr~vVl--tg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~IAav~G~ 142 (143)
.++..+.+.+...|..++.++..+.|.+ -+.|+ ++ ......+..|...+.|+++.+.|.
T Consensus 39 ~I~~~~~~~i~~~L~~l~~~~~~~~I~l~InSpGG------~v-------------~~g~~I~d~i~~~~~~v~t~~~G~ 99 (200)
T PRK00277 39 EVEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGG------SV-------------TAGLAIYDTMQFIKPDVSTICIGQ 99 (200)
T ss_pred EECHHHHHHHHHHHHHhhccCCCCCEEEEEECCCC------cH-------------HHHHHHHHHHHhcCCCEEEEEEeE
Confidence 3678889999999988876543333333 33332 11 122344566677778899998887
Q ss_pred C
Q psy9280 143 A 143 (143)
Q Consensus 143 a 143 (143)
|
T Consensus 100 a 100 (200)
T PRK00277 100 A 100 (200)
T ss_pred e
Confidence 5
No 123
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=58.91 E-value=40 Score=21.46 Aligned_cols=49 Identities=20% Similarity=0.169 Sum_probs=31.3
Q ss_pred cEEEEEecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCC
Q psy9280 40 NILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNE 96 (143)
Q Consensus 40 ~v~ve~~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g 96 (143)
++.++..+ ++.+|++..+ ++.+...++.+.+..+..++..+.|++--.+
T Consensus 4 ~i~~~~~~---~~~vi~~~G~-----l~~~~~~~~~~~l~~~~~~~~~~~vvidls~ 52 (108)
T TIGR00377 4 NIETEVQE---GVVIVRLSGE-----LDAHTAPLLREKVTPAAERTGPRPIVLDLED 52 (108)
T ss_pred EEEEEEEC---CEEEEEEecc-----cccccHHHHHHHHHHHHHhcCCCeEEEECCC
Confidence 35555555 8999998753 4455566677776666544456778885443
No 124
>PRK11778 putative inner membrane peptidase; Provisional
Probab=58.08 E-value=41 Score=27.07 Aligned_cols=74 Identities=12% Similarity=0.112 Sum_probs=38.8
Q ss_pred CcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc--CCCCccCCCCcchhhhhhhhhhHHhHHHHHHHH
Q psy9280 50 KNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG--NEKAFAAGADIKEMLNQTYAANVKTGLLEHWDN 127 (143)
Q Consensus 50 ~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg--~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~ 127 (143)
+.|++|.++.+=... -...+.+++...+.....+ .+|||.- .|+ .+.. .+ .....+.+
T Consensus 90 ~~v~VI~~~G~I~~~-~~~~l~e~i~a~l~~A~~~---~aVvLridSpGG------~v~~------s~----~a~~~l~~ 149 (330)
T PRK11778 90 PRLFVLDFKGDIDAS-EVESLREEITAILAVAKPG---DEVLLRLESPGG------VVHG------YG----LAASQLQR 149 (330)
T ss_pred CeEEEEEEEEEECCC-cchhhHHHHHHHHHhccCC---CeEEEEEeCCCC------chhH------HH----HHHHHHHH
Confidence 479999988542111 1123446666666555433 3566643 222 1111 00 01111445
Q ss_pred HhcCCCcEEEEEecCC
Q psy9280 128 ITKAKKPVIAAVNGYA 143 (143)
Q Consensus 128 l~~~~kP~IAav~G~a 143 (143)
+....||+++.+.+.|
T Consensus 150 lr~~~kpVva~v~~~A 165 (330)
T PRK11778 150 LRDAGIPLTVAVDKVA 165 (330)
T ss_pred HHhcCCCEEEEECCch
Confidence 5667899999998764
No 125
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=57.79 E-value=1e+02 Score=25.83 Aligned_cols=65 Identities=22% Similarity=0.288 Sum_probs=47.2
Q ss_pred cEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEE-cCCCCccCCCCcchhhhhhhhhhHHhHHHHHHHHHh
Q psy9280 51 NVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLT-GNEKAFAAGADIKEMLNQTYAANVKTGLLEHWDNIT 129 (143)
Q Consensus 51 ~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVlt-g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~ 129 (143)
.|..+.++. .++....+.+.++++.++++.. -+||+. .+++. ....+.++.+++.
T Consensus 27 ~v~vi~i~g-----~I~~~s~~~l~r~l~~A~~~~a-~~vvl~ldTPGG------------------l~~sm~~iv~~i~ 82 (436)
T COG1030 27 KVYVIEIDG-----AIDPASADYLQRALQSAEEENA-AAVVLELDTPGG------------------LLDSMRQIVRAIL 82 (436)
T ss_pred eEEEEEecC-----ccCHHHHHHHHHHHHHHHhCCC-cEEEEEecCCCc------------------hHHHHHHHHHHHH
Confidence 678888754 4899999999999999987763 355553 22221 1245677889999
Q ss_pred cCCCcEEEEE
Q psy9280 130 KAKKPVIAAV 139 (143)
Q Consensus 130 ~~~kP~IAav 139 (143)
+.+.|++..|
T Consensus 83 ~s~vPV~~yv 92 (436)
T COG1030 83 NSPVPVIGYV 92 (436)
T ss_pred cCCCCEEEEE
Confidence 9999988776
No 126
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=57.07 E-value=55 Score=23.33 Aligned_cols=59 Identities=19% Similarity=0.316 Sum_probs=37.3
Q ss_pred CCHHHHHHHHHHHHHHhcCCCee--EEEEEcCCCCccCCCCcchhhhhhhhhhHHhHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 66 LCDALVSEVAAAVQQFDQDSSVA--AIVLTGNEKAFAAGADIKEMLNQTYAANVKTGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 66 l~~~~~~el~~~l~~~~~d~~vr--~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
++.++...+.+.|..++..+..+ .|.|.+.| +|+ .....++..|..++.|+++.+.|.|
T Consensus 25 I~~~~~~~~~~~L~~l~~~~~~~~i~i~INSpG------G~v-------------~~g~~i~~~i~~~~~~v~t~~~G~a 85 (182)
T PF00574_consen 25 IDEESANRLISQLLYLENEDKNKPINIYINSPG------GDV-------------DAGLAIYDAIRSSKAPVTTVVLGLA 85 (182)
T ss_dssp BSHHHHHHHHHHHHHHHHHTSSSEEEEEEEECE------BCH-------------HHHHHHHHHHHHSSSEEEEEEEEEE
T ss_pred cCHHHHHHHHHHHHHHhccCCCceEEEEEcCCC------Ccc-------------HHHHHHHHHHHhcCCCeEEEEeCcc
Confidence 78899999999888774332222 22334433 232 1234566777788899988888864
No 127
>cd04241 AAK_FomA-like AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms. Together, the fomA and fomB genes in the fosfomycin biosynthetic gene cluster of Streptomyces wedmorensis confer high-level fosfomycin resistance. FomA and FomB proteins converted fosfomycin to fosfomycin monophosphate and fosfomycin diphosphate in the presence of ATP and a magnesium ion, indicating that FomA and FomB catalyzed phosphorylations of fosfomycin and fosfomycin monophosphate, respectively. FomA and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=56.83 E-value=28 Score=26.30 Aligned_cols=37 Identities=5% Similarity=0.100 Sum_probs=28.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCC
Q psy9280 59 RPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKA 98 (143)
Q Consensus 59 ~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~ 98 (143)
.++....++.+.++++.+.+.++. ..++|++.|.|..
T Consensus 13 ~~~~~~~~~~~~l~~l~~~l~~l~---g~~vvlVhGgg~~ 49 (252)
T cd04241 13 DKDRPETIREENLERIARELAEAI---DEKLVLVHGGGSF 49 (252)
T ss_pred cCCCCCccCHHHHHHHHHHHHhcc---CCCEEEEECCCcc
Confidence 333356799999999999999875 4678888886543
No 128
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=56.35 E-value=52 Score=21.31 Aligned_cols=46 Identities=15% Similarity=0.293 Sum_probs=35.5
Q ss_pred EEEEecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCC--------eeEEEEEcC
Q psy9280 42 LVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSS--------VAAIVLTGN 95 (143)
Q Consensus 42 ~ve~~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~--------vr~vVltg~ 95 (143)
.++..+ ++.+++++.| ++..-.+++.+.+.++..... ++.|||--.
T Consensus 3 ~~~~~~---~v~ii~~~g~-----l~f~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vIlD~s 56 (117)
T PF01740_consen 3 EIETHD---GVLIIRLDGP-----LFFANAEEFRDRIRKLIDEDPERIKKRQTIKNVILDMS 56 (117)
T ss_dssp EEEEET---TEEEEEEESE-----ESHHHHHHHHHHHHHHHCCSSS--HTSSSSSEEEEEET
T ss_pred eeEEEC---CEEEEEEeeE-----EEHHHHHHHHHHHHHhhhcccccccccccceEEEEEEE
Confidence 355555 8999999775 778888888888888877664 789999543
No 129
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=54.13 E-value=38 Score=28.21 Aligned_cols=51 Identities=20% Similarity=0.307 Sum_probs=32.4
Q ss_pred HHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchhhhhhhhhhHHhHHHHHHHHHhcCCCcEEEEEecC
Q psy9280 73 EVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQTYAANVKTGLLEHWDNITKAKKPVIAAVNGY 142 (143)
Q Consensus 73 el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~IAav~G~ 142 (143)
.+.+.++.+.+|+++++|++..++ + .+ .+.|.+..++... .||+|+..-|.
T Consensus 190 ~~~d~l~~l~~D~~t~~I~ly~E~-----------~---~~----~~~f~~aa~~a~~-~KPVv~~k~Gr 240 (447)
T TIGR02717 190 DESDLLEYLADDPDTKVILLYLEG-----------I---KD----GRKFLKTAREISK-KKPIVVLKSGT 240 (447)
T ss_pred CHHHHHHHHhhCCCCCEEEEEecC-----------C---CC----HHHHHHHHHHHcC-CCCEEEEecCC
Confidence 456677777777777777776543 0 00 1345565666655 89999987664
No 130
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=54.03 E-value=50 Score=24.35 Aligned_cols=59 Identities=12% Similarity=0.090 Sum_probs=36.1
Q ss_pred CCHHHHHHHHHHHHHHhcCCCeeEEEE--EcCCCCccCCCCcchhhhhhhhhhHHhHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 66 LCDALVSEVAAAVQQFDQDSSVAAIVL--TGNEKAFAAGADIKEMLNQTYAANVKTGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 66 l~~~~~~el~~~l~~~~~d~~vr~vVl--tg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
++..+...+.+.|..++..+..+.|.+ -+.|+..- .....+..|...+.||++.+.|.|
T Consensus 32 I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~-------------------ag~aI~d~i~~~~~~V~t~v~G~A 92 (197)
T PRK14512 32 INKDLSELFQEKILLLEALDSKKPIFVYIDSEGGDID-------------------AGFAIFNMIRFVKPKVFTIGVGLV 92 (197)
T ss_pred EcHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCCHH-------------------HHHHHHHHHHhCCCCEEEEEEeee
Confidence 667888888888888776232333333 34343211 123455666677888888888765
No 131
>PF03464 eRF1_2: eRF1 domain 2; InterPro: IPR005141 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known []. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site []. This domain is also found in other proteins which may also be involved in translation termination ; PDB: 3AGK_A 2VGN_A 2VGM_A 3J16_A 3IZQ 3IR9_A 3OBW_A 3MCA_B 2QI2_A 3E1Y_D ....
Probab=53.74 E-value=27 Score=23.85 Aligned_cols=45 Identities=18% Similarity=0.338 Sum_probs=30.5
Q ss_pred EEEEEEcCCCCCCC--CC----------HHHHHHHHHHHHHH--hcCCCeeEEEEEcCC
Q psy9280 52 VGLVQLNRPKSLNA--LC----------DALVSEVAAAVQQF--DQDSSVAAIVLTGNE 96 (143)
Q Consensus 52 V~~I~ln~p~~~Na--l~----------~~~~~el~~~l~~~--~~d~~vr~vVltg~g 96 (143)
+..|+.+-|.|... .+ ..+++++.+.+.+. ...+.+++|||.|.|
T Consensus 25 ~~~i~~~ip~K~~~Gg~s~~rf~r~~~~~~f~~~i~~~l~~~f~~~~~~~~~iIiaGPG 83 (133)
T PF03464_consen 25 LQRIESNIPGKHKKGGQSQRRFEREKALEKFFKEIAEALKKYFLVNFDDVKCIIIAGPG 83 (133)
T ss_dssp EEEEE-GHCCCSSTTCSHHHHHHHHHHHHHHHHHHHHHHHHHCCCHTTTCSEEEEEEST
T ss_pred EEEEEecCCCccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhccccccEEEEECCH
Confidence 34566666776543 12 36777777777776 566779999999975
No 132
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=51.67 E-value=1.5e+02 Score=25.09 Aligned_cols=82 Identities=13% Similarity=0.159 Sum_probs=48.5
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCC--CcchhhhhhhhhhHHhHHHHHHHHHh
Q psy9280 52 VGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGA--DIKEMLNQTYAANVKTGLLEHWDNIT 129 (143)
Q Consensus 52 V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~--Dl~~~~~~~~~~~~~~~~~~~~~~l~ 129 (143)
+.++-.+.--...+++....+.+..+++.+.... +-+|.|.- |.|+ ++.+-...- ...........++.
T Consensus 59 v~v~a~D~t~~gGs~g~~~~~Ki~ra~~~A~~~~-~P~v~l~d-----sgGa~~r~~eg~~~l---~~~g~i~~~~~~~~ 129 (493)
T PF01039_consen 59 VVVIAQDFTVLGGSVGEVHGEKIARAIELALENG-LPLVYLVD-----SGGAFLRMQEGVESL---MGMGRIFRAIARLS 129 (493)
T ss_dssp EEEEEEETTSGGGTBSHHHHHHHHHHHHHHHHHT-EEEEEEEE-----ESSBCGGGGGHHHHH---HHHHHHHHHHHHHH
T ss_pred EEEEEeccceecCCCCcccceeeehHHHHHHHcC-CCcEEecc-----ccccccccchhhhhh---hhhHHHHHHHHHHh
Confidence 3434444433567899999999999999888665 44555543 3334 333321111 11123344445666
Q ss_pred cCCCcEEEEEecCC
Q psy9280 130 KAKKPVIAAVNGYA 143 (143)
Q Consensus 130 ~~~kP~IAav~G~a 143 (143)
. .+|+|+++.|+|
T Consensus 130 ~-~iP~I~vv~G~~ 142 (493)
T PF01039_consen 130 G-GIPQISVVTGPC 142 (493)
T ss_dssp T-TS-EEEEEESEE
T ss_pred c-CCCeEEEEcccc
Confidence 6 999999999976
No 133
>KOG1255|consensus
Probab=49.33 E-value=50 Score=25.76 Aligned_cols=69 Identities=19% Similarity=0.307 Sum_probs=42.2
Q ss_pred cEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcC-CCCccCCCCcchhhhhhhhhhHHhHHHHHHHHHh
Q psy9280 51 NVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGN-EKAFAAGADIKEMLNQTYAANVKTGLLEHWDNIT 129 (143)
Q Consensus 51 ~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~-g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~ 129 (143)
.-..|-+-..+ .|--| +.++|+.+-.|++.+.+|+-|. |+ ..+++. ..+...+ .-.
T Consensus 203 QslcvGiGGDp-FnGT~------FID~L~vFl~D~~t~GIiliGEIGG-------------~AEe~A--A~flk~~-nSg 259 (329)
T KOG1255|consen 203 QSLCVGIGGDP-FNGTN------FIDCLEVFLEDPETEGIILIGEIGG-------------SAEEEA--AEFLKEY-NSG 259 (329)
T ss_pred ceeEEeecCCC-CCCcc------HHHHHHHHhcCcccceEEEEeccCC-------------hhhHHH--HHHHHHh-ccC
Confidence 34556665443 55543 5667778888999999999885 22 222221 2333333 224
Q ss_pred cCCCcEEEEEecC
Q psy9280 130 KAKKPVIAAVNGY 142 (143)
Q Consensus 130 ~~~kP~IAav~G~ 142 (143)
.-+||+|+.|-|.
T Consensus 260 ~~~kPVvsFIAG~ 272 (329)
T KOG1255|consen 260 STAKPVVSFIAGV 272 (329)
T ss_pred CCCCceeEEeecc
Confidence 5789999999874
No 134
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=49.30 E-value=65 Score=25.97 Aligned_cols=72 Identities=21% Similarity=0.283 Sum_probs=45.2
Q ss_pred cEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchhhhhhhhhhHHhHHHHHHHHHhc
Q psy9280 51 NVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQTYAANVKTGLLEHWDNITK 130 (143)
Q Consensus 51 ~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~ 130 (143)
+++.-+++.+. .-.+..+.+.++++.+.++ .+-+||+.| ||-.-...+... ...+.+.++++..
T Consensus 10 HLG~~~~~~~~----r~~d~~~~f~~~l~~a~~~-~vD~vliAG---------DlFd~~~Ps~~a--~~~~~~~l~~l~~ 73 (390)
T COG0420 10 HLGSKQLNLPS----RLEDQKKAFDELLEIAKEE-KVDFVLIAG---------DLFDTNNPSPRA--LKLFLEALRRLKD 73 (390)
T ss_pred ccchhhccCcc----chHHHHHHHHHHHHHHHHc-cCCEEEEcc---------ccccCCCCCHHH--HHHHHHHHHHhcc
Confidence 44444455554 4457777777777777654 468899998 554432222222 2566677788888
Q ss_pred CCCcEEEE
Q psy9280 131 AKKPVIAA 138 (143)
Q Consensus 131 ~~kP~IAa 138 (143)
..+|+++.
T Consensus 74 ~~Ipv~~I 81 (390)
T COG0420 74 AGIPVVVI 81 (390)
T ss_pred CCCcEEEe
Confidence 88888764
No 135
>smart00463 SMR Small MutS-related domain.
Probab=48.01 E-value=49 Score=20.19 Aligned_cols=31 Identities=10% Similarity=0.204 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHhcCCC-eeEEEEEcCCCC
Q psy9280 68 DALVSEVAAAVQQFDQDSS-VAAIVLTGNEKA 98 (143)
Q Consensus 68 ~~~~~el~~~l~~~~~d~~-vr~vVltg~g~~ 98 (143)
.+.+..|...++++..... -.+.||+|.|..
T Consensus 12 ~eA~~~l~~~l~~~~~~~~~~~~~II~G~G~~ 43 (80)
T smart00463 12 EEALTALDKFLNNARLKGLEQKLVIITGKGKH 43 (80)
T ss_pred HHHHHHHHHHHHHHHHcCCCceEEEEEcccCC
Confidence 4667778888888876654 467888998754
No 136
>PRK14556 pyrH uridylate kinase; Provisional
Probab=47.52 E-value=42 Score=25.87 Aligned_cols=55 Identities=9% Similarity=0.126 Sum_probs=39.7
Q ss_pred cccEEEEEecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccC
Q psy9280 38 FENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAA 101 (143)
Q Consensus 38 ~~~v~ve~~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~Fsa 101 (143)
|+.+.+..-| .+. .+++.+.+|.+.+.++.+.+.++.+. .+++.|+.|.|+.|..
T Consensus 15 ~~rvllKlsG---e~l-----~~~~~~~~d~~~~~~~a~~i~~~~~~-g~~i~iVvGGGni~Rg 69 (249)
T PRK14556 15 LKRILLKLSG---ESL-----SADQGFGINVESAQPIINQIKTLTNF-GVELALVVGGGNILRG 69 (249)
T ss_pred hCEEEEEEeh---hhC-----cCCCCCCcCHHHHHHHHHHHHHHHhC-CcEEEEEECCCHHHhC
Confidence 5556666554 221 23345789999999999999998653 5789999999888863
No 137
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=46.66 E-value=35 Score=21.03 Aligned_cols=36 Identities=11% Similarity=0.176 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCC
Q psy9280 68 DALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGA 103 (143)
Q Consensus 68 ~~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~ 103 (143)
.+.+..+.+.+..+.....-.+.||||.|.+=..|.
T Consensus 9 ~eA~~~l~~~l~~~~~~~~~~~~II~G~G~hS~~g~ 44 (83)
T PF01713_consen 9 EEALRALEEFLDEARQRGIRELRIITGKGNHSKGGV 44 (83)
T ss_dssp HHHHHHHHHHHHHHHHTTHSEEEEE--STCTCCTSH
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEeccCCCCCCCc
Confidence 456777888888887666667788899885444443
No 138
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=46.54 E-value=75 Score=20.19 Aligned_cols=51 Identities=16% Similarity=0.213 Sum_probs=32.2
Q ss_pred EEEEecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCcc
Q psy9280 42 LVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFA 100 (143)
Q Consensus 42 ~ve~~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~Fs 100 (143)
.++..+ ++.++++..+ ++..-.+++.+.+.++-...+.+.+++--.+=.|+
T Consensus 2 ~~~~~~---~~~vi~l~G~-----L~f~~~~~~~~~l~~~~~~~~~~~vilDls~v~~i 52 (106)
T TIGR02886 2 EFEVKG---DVLIVRLSGE-----LDHHTAERVRRKIDDAIERRPIKHLILNLKNVTFM 52 (106)
T ss_pred eEEEEC---CEEEEEEecc-----cchhhHHHHHHHHHHHHHhCCCCEEEEECCCCcEe
Confidence 345554 8999999654 55566666777766554334568888865544443
No 139
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=46.33 E-value=41 Score=29.03 Aligned_cols=24 Identities=38% Similarity=0.594 Sum_probs=19.5
Q ss_pred hHHHHHHHHHhcCCCcEEEEEecC
Q psy9280 119 TGLLEHWDNITKAKKPVIAAVNGY 142 (143)
Q Consensus 119 ~~~~~~~~~l~~~~kP~IAav~G~ 142 (143)
..+.+.++.+..+.+|+|.+||-+
T Consensus 359 ~NL~RHIenvr~FGvPvVVAINKF 382 (557)
T PRK13505 359 ANLERHIENIRKFGVPVVVAINKF 382 (557)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeCC
Confidence 456666788899999999999853
No 140
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=45.51 E-value=19 Score=25.82 Aligned_cols=39 Identities=26% Similarity=0.294 Sum_probs=27.2
Q ss_pred CCCCHHHHHHHHHHHHHHhcC-----CCeeEEEEEcCCCCccCCCCcch
Q psy9280 64 NALCDALVSEVAAAVQQFDQD-----SSVAAIVLTGNEKAFAAGADIKE 107 (143)
Q Consensus 64 Nal~~~~~~el~~~l~~~~~d-----~~vr~vVltg~g~~FsaG~Dl~~ 107 (143)
+.+ .+.++++.++++.+.++ -+..-|+|.| +|+|+.|..
T Consensus 43 ~~~-p~~~~D~~~a~~~l~~~~~~~~~d~~~i~l~G----~SAGg~la~ 86 (211)
T PF07859_consen 43 APF-PAALEDVKAAYRWLLKNADKLGIDPERIVLIG----DSAGGHLAL 86 (211)
T ss_dssp SST-THHHHHHHHHHHHHHHTHHHHTEEEEEEEEEE----ETHHHHHHH
T ss_pred ccc-cccccccccceeeeccccccccccccceEEee----cccccchhh
Confidence 444 58899999999998776 4455677776 566666543
No 141
>cd07561 Peptidase_S41_CPP_like C-terminal processing peptidase-like; serine protease family S41. Bacterial protease homologs of the S41 family related to C-terminal processing peptidase (CPP). CPP-1 is believed to be important for the degradation of incorrectly synthesized proteins as well as protection from thermal and osmotic stresses. CPP is synthesized with an extension on its carboxyl-terminus and specifically recognizes a C-terminal tripeptide, but cleaves at variable distance from the C-terminus. The CPP active site consists of a serine/lysine catalytic dyad. Conservation of these residues is seen in the CPP-like proteins of this group. CPP proteins contain a PDZ domain that promotes protein-protein interactions and is important for substrate recognition however, most of CPP-like proteins only have an internal fragment or lack the PDZ domain.
Probab=44.27 E-value=69 Score=24.56 Aligned_cols=46 Identities=24% Similarity=0.356 Sum_probs=32.9
Q ss_pred CCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEE--EcC-CCCccC
Q psy9280 49 NKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVL--TGN-EKAFAA 101 (143)
Q Consensus 49 ~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVl--tg~-g~~Fsa 101 (143)
+++|+.|+++. |+....++|.+++.++... .++.+|| +++ |+....
T Consensus 63 ~~~IGYi~i~~------F~~~~~~~l~~a~~~l~~~-~~~~LIlDLR~N~GG~~~~ 111 (256)
T cd07561 63 GKKVGYLVYNS------FTSGYDDELNQAFAEFKAQ-GVTELVLDLRYNGGGLVSS 111 (256)
T ss_pred CCcEEEEEECc------cccchHHHHHHHHHHHHHc-CCCeEEEEeCCCCCccHHH
Confidence 45899999975 4444778899999999754 5788988 665 344333
No 142
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=43.69 E-value=1.3e+02 Score=22.32 Aligned_cols=31 Identities=3% Similarity=0.175 Sum_probs=24.2
Q ss_pred CCCCC---HHHHHHHHHHHHHHhcCCCeeEEEEEcC
Q psy9280 63 LNALC---DALVSEVAAAVQQFDQDSSVAAIVLTGN 95 (143)
Q Consensus 63 ~Nal~---~~~~~el~~~l~~~~~d~~vr~vVltg~ 95 (143)
.|.+. .+.++++.++++.+..+ ..+||++|.
T Consensus 17 ~~~~g~~~~~~~~~i~~~~~~~~~~--~D~viiaGD 50 (232)
T cd07393 17 MDVFGPEWKNHTEKIKENWDNVVAP--EDIVLIPGD 50 (232)
T ss_pred CcccCccHHHHHHHHHHHHHhcCCC--CCEEEEcCC
Confidence 56777 68899999999888754 458999984
No 143
>PRK06091 membrane protein FdrA; Validated
Probab=42.84 E-value=87 Score=27.13 Aligned_cols=18 Identities=33% Similarity=0.589 Sum_probs=12.6
Q ss_pred HHHHhcCCCcEEEEEecC
Q psy9280 125 WDNITKAKKPVIAAVNGY 142 (143)
Q Consensus 125 ~~~l~~~~kP~IAav~G~ 142 (143)
+....++.||+|+..-|.
T Consensus 272 l~aar~~~KPVVvlk~Gr 289 (555)
T PRK06091 272 INAMKATGKPVVALFLGY 289 (555)
T ss_pred HHHHhhCCCCEEEEEecC
Confidence 344445699999987773
No 144
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=42.53 E-value=49 Score=26.47 Aligned_cols=44 Identities=18% Similarity=0.147 Sum_probs=30.4
Q ss_pred CCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 49 NKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 49 ~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
.+....+++++.. |.-+.+.++++.++++.+...+++.+|+...
T Consensus 179 ~~~~iLvt~H~~t--~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~h 222 (346)
T PF02350_consen 179 PKPYILVTLHPVT--NEDNPERLEQILEALKALAERQNVPVIFPLH 222 (346)
T ss_dssp TSEEEEEE-S-CC--CCTHH--HHHHHHHHHHHHHHTTEEEEEE--
T ss_pred CCCEEEEEeCcch--hcCChHHHHHHHHHHHHHHhcCCCcEEEEec
Confidence 3478999998876 6666888999999999998777777776654
No 145
>PRK01160 hypothetical protein; Provisional
Probab=40.26 E-value=87 Score=22.96 Aligned_cols=41 Identities=17% Similarity=0.313 Sum_probs=30.0
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCC
Q psy9280 53 GLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNE 96 (143)
Q Consensus 53 ~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g 96 (143)
..++.+||+ -.++.+.++.+.+++..++.+.. ..|.+.|..
T Consensus 85 ~~i~V~NPp--GtIt~el~~ai~~a~~~~~~~~~-~~I~VdGEE 125 (178)
T PRK01160 85 VSITVRNPP--GTITLALLRAIKKAFSLIERGKK-VRIEVNGEE 125 (178)
T ss_pred cEEEEECCC--CcccHHHHHHHHHHHHhhhcCCe-EEEEEcChH
Confidence 348888987 88999999999999876654432 345557754
No 146
>PF12268 DUF3612: Protein of unknown function (DUF3612); InterPro: IPR022055 This domain family is found in bacteria, and is approximately 180 amino acids in length. The family is found in association with PF01381 from PFAM.
Probab=39.46 E-value=25 Score=25.19 Aligned_cols=25 Identities=28% Similarity=0.526 Sum_probs=19.6
Q ss_pred CeeEEEEEcCCCCccCCCCcchhhh
Q psy9280 86 SVAAIVLTGNEKAFAAGADIKEMLN 110 (143)
Q Consensus 86 ~vr~vVltg~g~~FsaG~Dl~~~~~ 110 (143)
++++.=+.|.....|+|.||+....
T Consensus 79 Si~v~D~Agn~hVLCaGIDLNPAi~ 103 (178)
T PF12268_consen 79 SIKVKDLAGNNHVLCAGIDLNPAID 103 (178)
T ss_pred ccccccCCCCceeEEecccCCHhHh
Confidence 4566667788899999999987543
No 147
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=38.87 E-value=1.3e+02 Score=22.28 Aligned_cols=59 Identities=12% Similarity=0.172 Sum_probs=37.3
Q ss_pred CCHHHHHHHHHHHHHHhcCCCeeEEE--EEcCCCCccCCCCcchhhhhhhhhhHHhHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 66 LCDALVSEVAAAVQQFDQDSSVAAIV--LTGNEKAFAAGADIKEMLNQTYAANVKTGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 66 l~~~~~~el~~~l~~~~~d~~vr~vV--ltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
++.++.+++...|-.++.++..+-+. |-+.|+...+ ....+..|...+.|+...+.|.|
T Consensus 39 i~~~~a~~ii~~ll~L~~~~~~~~I~l~INSpGG~v~~-------------------g~aIyd~m~~~~~~V~Tv~~G~A 99 (200)
T CHL00028 39 VDDEIANQLIGLMVYLSIEDDTKDLYLFINSPGGSVIS-------------------GLAIYDTMQFVKPDVHTICLGLA 99 (200)
T ss_pred ecHHHHHHHHHHHHHHhccCCCCCEEEEEeCCCcchhh-------------------HHHHHHHHHhcCCCEEEEEEEeh
Confidence 88899999999998887544334333 3444432212 23455666777777777777754
No 148
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=38.10 E-value=1e+02 Score=22.32 Aligned_cols=38 Identities=16% Similarity=0.344 Sum_probs=28.0
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
.+-|+.|- +.+|....+++.+.+.++..+... .||++.
T Consensus 161 lllLDEP~--~~LD~~~~~~l~~~l~~~~~~~~~-tii~~s 198 (218)
T cd03255 161 IILADEPT--GNLDSETGKEVMELLRELNKEAGT-TIVVVT 198 (218)
T ss_pred EEEEcCCc--ccCCHHHHHHHHHHHHHHHHhcCC-eEEEEE
Confidence 56677774 999999999999999998654343 444443
No 149
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=37.96 E-value=44 Score=26.54 Aligned_cols=28 Identities=14% Similarity=0.368 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhcCCCeeEEEEEcCCCCcc
Q psy9280 72 SEVAAAVQQFDQDSSVAAIVLTGNEKAFA 100 (143)
Q Consensus 72 ~el~~~l~~~~~d~~vr~vVltg~g~~Fs 100 (143)
+++.++++.+..+++++-|+||| |.-|.
T Consensus 128 ~~~~~~i~~i~~~~~i~~VvltG-GEPL~ 155 (321)
T TIGR03821 128 AQWKEALEYIAQHPEINEVILSG-GDPLM 155 (321)
T ss_pred HHHHHHHHHHHhcCCCCEEEEeC-ccccc
Confidence 46667777787788899999999 55554
No 150
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=37.68 E-value=1.1e+02 Score=22.05 Aligned_cols=38 Identities=18% Similarity=0.306 Sum_probs=27.2
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
.+.|+.|- +.+|....+++.+.+.++..+ ..-+|++|-
T Consensus 155 llllDEPt--~~LD~~~~~~~~~~l~~~~~~-~~tvi~~sH 192 (211)
T cd03225 155 ILLLDEPT--AGLDPAGRRELLELLKKLKAE-GKTIIIVTH 192 (211)
T ss_pred EEEEcCCc--ccCCHHHHHHHHHHHHHHHHc-CCEEEEEeC
Confidence 56677774 899999999999999888654 333344443
No 151
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=37.39 E-value=93 Score=25.37 Aligned_cols=48 Identities=29% Similarity=0.495 Sum_probs=32.8
Q ss_pred cEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEE--EcC-CCCccCCCCc
Q psy9280 51 NVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVL--TGN-EKAFAAGADI 105 (143)
Q Consensus 51 ~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVl--tg~-g~~FsaG~Dl 105 (143)
+|+.|.++. |+....+++.++++++... .++.+|| +++ |+.+..+.++
T Consensus 195 ~IgYi~i~~------F~~~~~~~~~~~l~~l~~~-~~~glIlDLR~N~GG~~~~a~~i 245 (389)
T PLN00049 195 KIGYIKLTT------FNQNASSAVKEAIETLRAN-GVDAFVLDLRDNSGGLFPAGIEI 245 (389)
T ss_pred CEEEEEecc------ccchhHHHHHHHHHHHHHC-CCCEEEEEcCCCCCCCHHHHHHH
Confidence 688888743 5556678899999998754 4789998 564 4444444444
No 152
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=37.29 E-value=1.1e+02 Score=22.43 Aligned_cols=39 Identities=13% Similarity=0.239 Sum_probs=28.4
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
.+.|+.|- +.+|....+.+.+.+.++..+...-+++++-
T Consensus 167 llllDEPt--~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH 205 (228)
T PRK10584 167 VLFADEPT--GNLDRQTGDKIADLLFSLNREHGTTLILVTH 205 (228)
T ss_pred EEEEeCCC--CCCCHHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 56777775 9999999999999999986543433444443
No 153
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=37.26 E-value=41 Score=26.66 Aligned_cols=38 Identities=16% Similarity=0.304 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchh
Q psy9280 71 VSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEM 108 (143)
Q Consensus 71 ~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~ 108 (143)
.+++.++++.+..+++++-|+|||+....-.--++.++
T Consensus 121 ~~e~~~~i~~i~~~~~I~~VilSGGDPl~~~~~~L~~l 158 (321)
T TIGR03822 121 PAELDAAFAYIADHPEIWEVILTGGDPLVLSPRRLGDI 158 (321)
T ss_pred HHHHHHHHHHHHhCCCccEEEEeCCCcccCCHHHHHHH
Confidence 36788888888888889999999964443223345444
No 154
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=37.18 E-value=1e+02 Score=22.72 Aligned_cols=39 Identities=15% Similarity=0.309 Sum_probs=28.9
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
.+.|+.|- +.+|.....++.+.+.++.++....+++++-
T Consensus 151 llllDEP~--~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh 189 (232)
T cd03300 151 VLLLDEPL--GALDLKLRKDMQLELKRLQKELGITFVFVTH 189 (232)
T ss_pred EEEEcCCc--ccCCHHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 46677875 9999999999999999987543434444454
No 155
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=36.85 E-value=1.2e+02 Score=22.43 Aligned_cols=38 Identities=13% Similarity=0.352 Sum_probs=28.6
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
.+-|+.|- +.+|....+++.+.+.++..+.. +.||++.
T Consensus 174 llllDEPt--~~LD~~~~~~l~~~l~~~~~~~~-~tiiivs 211 (236)
T cd03267 174 ILFLDEPT--IGLDVVAQENIRNFLKEYNRERG-TTVLLTS 211 (236)
T ss_pred EEEEcCCC--CCCCHHHHHHHHHHHHHHHhcCC-CEEEEEe
Confidence 56778875 99999999999999999865443 3455544
No 156
>PF08436 DXP_redisom_C: 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal; InterPro: IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found to the C terminus of IPR013512 from INTERPRO domains in bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0005515 protein binding; PDB: 3AUA_A 3AU9_B 3AU8_B 3A14_A 3A06_A 2Y1D_B 4AIC_A 2JD0_B 2Y1C_B 2JD1_A ....
Probab=36.20 E-value=43 Score=21.46 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=19.6
Q ss_pred HHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchhhhh
Q psy9280 73 EVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQ 111 (143)
Q Consensus 73 el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~ 111 (143)
.+-++|..-.. .+++-++||+.|+.|- +..++++...
T Consensus 10 AifQ~L~~~~~-~~v~~i~lTASGGpFr-~~~~~~l~~v 46 (84)
T PF08436_consen 10 AIFQCLQGEKR-EEVEKIILTASGGPFR-DKPREELKNV 46 (84)
T ss_dssp HHHHHSGHHHH-CTEEEEEEEE--STTT-TSHHHHHTT-
T ss_pred HHHHHCCCCCc-cccCEEEEECcchhhC-CCCHHHHcCC
Confidence 34445544433 3599999998877663 3334444443
No 157
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=36.02 E-value=1.4e+02 Score=20.76 Aligned_cols=38 Identities=26% Similarity=0.420 Sum_probs=27.3
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
.+-|+.|- +.+|.+..+++.+.+.++.++ ..-+|+++-
T Consensus 103 illlDEP~--~~LD~~~~~~l~~~l~~~~~~-~~tiii~sh 140 (163)
T cd03216 103 LLILDEPT--AALTPAEVERLFKVIRRLRAQ-GVAVIFISH 140 (163)
T ss_pred EEEEECCC--cCCCHHHHHHHHHHHHHHHHC-CCEEEEEeC
Confidence 46667774 999999999999999988643 333444443
No 158
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=35.84 E-value=1.2e+02 Score=22.08 Aligned_cols=39 Identities=15% Similarity=0.244 Sum_probs=27.6
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
++-|+.|- +.+|....+++.+.+.++..+...-+|++|-
T Consensus 162 illlDEPt--~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH 200 (221)
T TIGR02211 162 LVLADEPT--GNLDNNNAKIIFDLMLELNRELNTSFLVVTH 200 (221)
T ss_pred EEEEeCCC--CcCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 46677774 8999999999999999886543433344443
No 159
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=35.76 E-value=1.1e+02 Score=22.14 Aligned_cols=39 Identities=26% Similarity=0.380 Sum_probs=27.7
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
.+-|+.|- +.+|....+++.+.+.++......-+|++|-
T Consensus 152 llllDEPt--~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH 190 (214)
T cd03297 152 LLLLDEPF--SALDRALRLQLLPELKQIKKNLNIPVIFVTH 190 (214)
T ss_pred EEEEcCCc--ccCCHHHHHHHHHHHHHHHHHcCcEEEEEec
Confidence 46677774 9999999999999999886543333444443
No 160
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=35.67 E-value=1.2e+02 Score=21.97 Aligned_cols=40 Identities=23% Similarity=0.337 Sum_probs=28.4
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 53 GLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 53 ~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
-.+-|+.|- +.+|....+++.+.+.++..+...-++++|-
T Consensus 148 ~llllDEP~--~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH 187 (211)
T cd03298 148 PVLLLDEPF--AALDPALRAEMLDLVLDLHAETKMTVLMVTH 187 (211)
T ss_pred CEEEEcCCc--ccCCHHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 356677774 9999999999999999886543433444443
No 161
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=34.89 E-value=1.3e+02 Score=21.86 Aligned_cols=39 Identities=26% Similarity=0.322 Sum_probs=28.1
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
.+-|+.|- +.+|....+++.+.+.++.+....-+|++|-
T Consensus 149 llllDEPt--~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh 187 (213)
T TIGR01277 149 ILLLDEPF--SALDPLLREEMLALVKQLCSERQRTLLMVTH 187 (213)
T ss_pred EEEEcCCC--ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 46677774 8999999999999999986543433444443
No 162
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=34.39 E-value=1.2e+02 Score=22.20 Aligned_cols=40 Identities=15% Similarity=0.306 Sum_probs=29.1
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcC
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGN 95 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~ 95 (143)
++.|+.|- +.+|....+.+.+.+.++..+....+|++|-.
T Consensus 158 llllDEPt--~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~ 197 (225)
T PRK10247 158 VLLLDEIT--SALDESNKHNVNEIIHRYVREQNIAVLWVTHD 197 (225)
T ss_pred EEEEeCCc--ccCCHHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 46677774 99999999999999999865444344444543
No 163
>PF04439 Adenyl_transf: Streptomycin adenylyltransferase; InterPro: IPR007530 Also known as aminoglycoside 6-adenylyltransferase (2.7.7 from EC), this protein confers resistance to aminoglycoside antibiotics.; PDB: 2PBE_A.
Probab=34.24 E-value=48 Score=25.97 Aligned_cols=21 Identities=24% Similarity=0.434 Sum_probs=13.0
Q ss_pred HHHHHHHhcCCCeeEEEEEcC
Q psy9280 75 AAAVQQFDQDSSVAAIVLTGN 95 (143)
Q Consensus 75 ~~~l~~~~~d~~vr~vVltg~ 95 (143)
...++.+.+|+.||+|+++|.
T Consensus 9 ~~Il~~A~~d~rIraV~l~GS 29 (282)
T PF04439_consen 9 DLILEFAKQDERIRAVILNGS 29 (282)
T ss_dssp HHHHHHHHH-TTEEEEEE---
T ss_pred HHHHHHHhcCCcEEEEEEecC
Confidence 344556668999999999984
No 164
>KOG2567|consensus
Probab=34.14 E-value=75 Score=23.10 Aligned_cols=34 Identities=21% Similarity=0.321 Sum_probs=23.5
Q ss_pred HHHHHhcCCCeeEEEEEcCCCCccCCCCcchhhh
Q psy9280 77 AVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLN 110 (143)
Q Consensus 77 ~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~ 110 (143)
.-..+-++.+.|+||++|.|++-.--.-+.++..
T Consensus 35 ~A~~~L~~~~~r~VVfsg~Grai~KTVscaEilK 68 (179)
T KOG2567|consen 35 FATELLQKGSHRCVVFSGSGRAIVKTVSCAEILK 68 (179)
T ss_pred HHHHHhhCCCeeEEEEecCCcceeeeeeHHHHHh
Confidence 3334556788999999998877655555555544
No 165
>PF04536 TPM: TLP18.3, Psb32 and MOLO-1 founding proteins of phosphatase; InterPro: IPR007621 This is a family of uncharacterised proteins. They are found in both eukarya and eubacteria. In eubacteria the region is towards the N-terminal of the protein and is accompanied by an N-terminal signal sequence. The C-terminal of eubacterial proteins typically contains one or more putative transmembrane regions. In eukaryotes the region is not accompanied by a signal sequence.; PDB: 3PTJ_A 3PW9_A 3PVH_A 2KPT_A 2KW7_A.
Probab=34.08 E-value=62 Score=20.96 Aligned_cols=28 Identities=18% Similarity=0.351 Sum_probs=19.2
Q ss_pred CCHHHHHHHHHHHHHHhcCCCeeEEEEE
Q psy9280 66 LCDALVSEVAAAVQQFDQDSSVAAIVLT 93 (143)
Q Consensus 66 l~~~~~~el~~~l~~~~~d~~vr~vVlt 93 (143)
|+.+-..+|.+.+.+++....+..+|++
T Consensus 2 Ls~~~~~~l~~~l~~~~~~t~~~i~Vvt 29 (119)
T PF04536_consen 2 LSQEERERLNQALAKLEKKTGVQIVVVT 29 (119)
T ss_dssp S-HHHHHHHHHHHHHHHHHC--EEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHhhCCEEEEEE
Confidence 5677778888888888877777776665
No 166
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=33.83 E-value=1.2e+02 Score=22.28 Aligned_cols=39 Identities=13% Similarity=0.287 Sum_probs=28.2
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
++-|+.|- +.+|....+++.+.+.++..+...-+|++|-
T Consensus 157 llllDEPt--~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH 195 (235)
T cd03261 157 LLLYDEPT--AGLDPIASGVIDDLIRSLKKELGLTSIMVTH 195 (235)
T ss_pred EEEecCCc--ccCCHHHHHHHHHHHHHHHHhcCcEEEEEec
Confidence 56677774 9999999999999999986543333444443
No 167
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=33.55 E-value=58 Score=24.16 Aligned_cols=55 Identities=16% Similarity=0.343 Sum_probs=35.7
Q ss_pred cEEEEEEcCCC-CCCCCC-HHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchhh
Q psy9280 51 NVGLVQLNRPK-SLNALC-DALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEML 109 (143)
Q Consensus 51 ~V~~I~ln~p~-~~Nal~-~~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~ 109 (143)
|+.+|-+|... --+.=+ .++-.+|.+.++...+....+-|||-| ||-|+|+-.+.
T Consensus 29 G~~VvGvdsl~Yfw~~rtP~~~a~Dl~~~i~~y~~~w~~~~vvLiG----YSFGADvlP~~ 85 (192)
T PF06057_consen 29 GVPVVGVDSLRYFWSERTPEQTAADLARIIRHYRARWGRKRVVLIG----YSFGADVLPFI 85 (192)
T ss_pred CCeEEEechHHHHhhhCCHHHHHHHHHHHHHHHHHHhCCceEEEEe----ecCCchhHHHH
Confidence 66777776421 001111 356667777777777766667788887 99999986653
No 168
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=33.47 E-value=1.4e+02 Score=21.03 Aligned_cols=38 Identities=16% Similarity=0.259 Sum_probs=27.5
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
.+-|+.|- +.+|.+..+.+.+.+.++..+... .++++.
T Consensus 118 llllDEP~--~~LD~~~~~~~~~~l~~~~~~~~~-tiii~s 155 (180)
T cd03214 118 ILLLDEPT--SHLDIAHQIELLELLRRLARERGK-TVVMVL 155 (180)
T ss_pred EEEEeCCc--cCCCHHHHHHHHHHHHHHHHhcCC-EEEEEe
Confidence 46677775 899999999999999998654233 444443
No 169
>PRK03195 hypothetical protein; Provisional
Probab=33.46 E-value=1.1e+02 Score=22.62 Aligned_cols=50 Identities=18% Similarity=0.171 Sum_probs=33.3
Q ss_pred cEEEEEEcCCCCCCCCCHH-HHHHHHHHHHHHhcCCCeeEEEEEc-CCCCccCC
Q psy9280 51 NVGLVQLNRPKSLNALCDA-LVSEVAAAVQQFDQDSSVAAIVLTG-NEKAFAAG 102 (143)
Q Consensus 51 ~V~~I~ln~p~~~Nal~~~-~~~el~~~l~~~~~d~~vr~vVltg-~g~~FsaG 102 (143)
++++|..+.+. -+.... +..+|.+.|.+.-.+.-|+-|+|.| .+..|.-|
T Consensus 121 gvL~V~~~Ssa--WAteL~~~k~~Ii~rLN~~lG~~vV~~I~i~GP~~psw~~g 172 (186)
T PRK03195 121 GVLSVSAESTA--WATQLRMMQAQLLAKIAAAVGDGVVTSLKITGPAAPSWRKG 172 (186)
T ss_pred CEEEEEeCCHH--HHHHHHhhHHHHHHHHHHHhCccceeEEEEeCCCCCCCCcC
Confidence 89999998864 222222 2234555666666678899999999 46777665
No 170
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=33.29 E-value=91 Score=25.74 Aligned_cols=50 Identities=8% Similarity=0.361 Sum_probs=37.2
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEE--EcC-CCCccCCCCcchh
Q psy9280 52 VGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVL--TGN-EKAFAAGADIKEM 108 (143)
Q Consensus 52 V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVl--tg~-g~~FsaG~Dl~~~ 108 (143)
|+.|++. .|+....++|..++.+++.+. ++++|| +++ |+..+...++..+
T Consensus 205 IGyI~I~------~F~~~~~~~~~~al~~L~~~~-~~GlIlDLR~N~GG~L~~av~i~~~ 257 (406)
T COG0793 205 IGYIRIP------SFGEGTYEDLEKALDELKKQG-AKGLILDLRNNPGGLLSQAVKLAGL 257 (406)
T ss_pred EEEEEec------ccccchHHHHHHHHHHHHhcC-CcEEEEEeCCCCCccHHHHHHHHHc
Confidence 7777774 366677778999999998877 899999 665 5666666666543
No 171
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=33.27 E-value=1.4e+02 Score=21.03 Aligned_cols=39 Identities=13% Similarity=0.362 Sum_probs=30.4
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 53 GLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 53 ~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
.++-++-|+ +.|++.+...|.+.+..+.. ..+.+++-|-
T Consensus 259 ~illiDEpE--~~LHp~~q~~l~~~l~~~~~-~~~QviitTH 297 (303)
T PF13304_consen 259 SILLIDEPE--NHLHPSWQRKLIELLKELSK-KNIQVIITTH 297 (303)
T ss_dssp SEEEEESSS--TTSSHHHHHHHHHHHHHTGG-GSSEEEEEES
T ss_pred eEEEecCCc--CCCCHHHHHHHHHHHHhhCc-cCCEEEEeCc
Confidence 457788998 99999999999999988866 3456655553
No 172
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=33.23 E-value=1.4e+02 Score=21.70 Aligned_cols=39 Identities=13% Similarity=0.218 Sum_probs=28.9
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
.+-|+.|- +.+|....+.+.+.+.++..+...-+|++|.
T Consensus 152 llllDEPt--~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH 190 (220)
T cd03265 152 VLFLDEPT--IGLDPQTRAHVWEYIEKLKEEFGMTILLTTH 190 (220)
T ss_pred EEEEcCCc--cCCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 56777774 9999999999999999987653434444454
No 173
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=32.72 E-value=1.3e+02 Score=22.79 Aligned_cols=39 Identities=10% Similarity=0.227 Sum_probs=28.7
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
++-|+.|- +.+|....+++.+.+.++..+...-+|++|-
T Consensus 164 lllLDEPt--~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH 202 (269)
T PRK11831 164 LIMFDEPF--VGQDPITMGVLVKLISELNSALGVTCVVVSH 202 (269)
T ss_pred EEEEcCCC--ccCCHHHHHHHHHHHHHHHHhcCcEEEEEec
Confidence 56677774 9999999999999999986543433444444
No 174
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=32.56 E-value=1.2e+02 Score=22.74 Aligned_cols=40 Identities=13% Similarity=0.247 Sum_probs=29.7
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcC
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGN 95 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~ 95 (143)
++-|+.|- +.+|....+.+.+.+.++..+...-+|++|..
T Consensus 173 llllDEPt--~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~ 212 (262)
T PRK09984 173 VILADEPI--ASLDPESARIVMDTLRDINQNDGITVVVTLHQ 212 (262)
T ss_pred EEEecCcc--ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 56778875 99999999999999999865444344444543
No 175
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=32.40 E-value=1.5e+02 Score=21.65 Aligned_cols=39 Identities=10% Similarity=0.446 Sum_probs=28.1
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
++-|+.|- +.+|.....++.+.+.++.++...-+|++|-
T Consensus 152 illlDEPt--~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH 190 (230)
T TIGR03410 152 LLLLDEPT--EGIQPSIIKDIGRVIRRLRAEGGMAILLVEQ 190 (230)
T ss_pred EEEecCCc--ccCCHHHHHHHHHHHHHHHHcCCcEEEEEeC
Confidence 46677774 9999999999999999987543333344443
No 176
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=32.37 E-value=85 Score=24.65 Aligned_cols=38 Identities=18% Similarity=0.354 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcC
Q psy9280 52 VGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGN 95 (143)
Q Consensus 52 V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~ 95 (143)
|.++|+ |+ |..+. .+.....+..+..|+.+++||+...
T Consensus 34 I~h~ty--Pd--nf~~e--~EttIskI~~lAdDp~mKaIVv~q~ 71 (275)
T PF12683_consen 34 IKHVTY--PD--NFMSE--QETTISKIVSLADDPDMKAIVVSQA 71 (275)
T ss_dssp EEEEE----T--TGGGC--HHHHHHHHHGGGG-TTEEEEEEE-S
T ss_pred EEEEeC--CC--cccch--HHHHHHHHHHhccCCCccEEEEeCC
Confidence 556666 65 54442 3333444445556999999999653
No 177
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=32.25 E-value=1.4e+02 Score=21.73 Aligned_cols=37 Identities=11% Similarity=0.340 Sum_probs=25.9
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEE
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLT 93 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVlt 93 (143)
.+-|+.|- +.+|....+++.+.+.++..+... .||++
T Consensus 166 lllLDEPt--~~LD~~~~~~l~~~l~~~~~~~~~-tii~~ 202 (228)
T cd03257 166 LLIADEPT--SALDVSVQAQILDLLKKLQEELGL-TLLFI 202 (228)
T ss_pred EEEecCCC--CCCCHHHHHHHHHHHHHHHHHcCC-EEEEE
Confidence 45667764 889999999999999888654333 44443
No 178
>TIGR03124 ctirate_citX holo-ACP synthase CitX. Members of this protein family are the CitX protein, or CitX domain of the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems.
Probab=32.24 E-value=1e+02 Score=22.27 Aligned_cols=61 Identities=21% Similarity=0.190 Sum_probs=41.0
Q ss_pred cEEEEEEcCCC--CCCCCCHHHHHHHHHHHHHHhcCCCeeEEE---E---EcCCCCccCCCCcchhhhh
Q psy9280 51 NVGLVQLNRPK--SLNALCDALVSEVAAAVQQFDQDSSVAAIV---L---TGNEKAFAAGADIKEMLNQ 111 (143)
Q Consensus 51 ~V~~I~ln~p~--~~Nal~~~~~~el~~~l~~~~~d~~vr~vV---l---tg~g~~FsaG~Dl~~~~~~ 111 (143)
.+..+|||-|. |.|.+...+++...+++...-.+..+..+. + ||-..+|..-.|..++...
T Consensus 27 ~Lvs~tlniPGpvK~~~~~~~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~tG~E~~~~v~~~a~~vK~~ 95 (165)
T TIGR03124 27 TLLSLTLNIPGPIKNNELLRRVFDIGIKAIEALLAKNGWTILVQQALNEATGPEAFLVVDAPALELKRL 95 (165)
T ss_pred eEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhcCCeeeeeeeccCCCCcEEEEEeCCCHHHHHHH
Confidence 46668888665 888888888888777777665444333221 1 4555778888888776653
No 179
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=32.22 E-value=1.5e+02 Score=21.35 Aligned_cols=37 Identities=11% Similarity=0.252 Sum_probs=26.9
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
.+-|+.|- +.+|....+++.+.+.++.. .. +.||+..
T Consensus 153 llllDEPt--~~LD~~~~~~l~~~l~~~~~-~~-~tvi~~s 189 (213)
T cd03235 153 LLLLDEPF--AGVDPKTQEDIYELLRELRR-EG-MTILVVT 189 (213)
T ss_pred EEEEeCCc--ccCCHHHHHHHHHHHHHHHh-cC-CEEEEEe
Confidence 45667774 99999999999999998865 33 3444443
No 180
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=31.94 E-value=1.4e+02 Score=21.53 Aligned_cols=38 Identities=18% Similarity=0.337 Sum_probs=27.6
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
.+-|+.|- +.+|.....++.+.+.++..... +.||++.
T Consensus 151 ~lllDEPt--~~LD~~~~~~l~~~l~~~~~~~~-~tii~~s 188 (213)
T cd03259 151 LLLLDEPL--SALDAKLREELREELKELQRELG-ITTIYVT 188 (213)
T ss_pred EEEEcCCc--ccCCHHHHHHHHHHHHHHHHHcC-CEEEEEe
Confidence 56677775 99999999999999998865333 3444443
No 181
>smart00245 TSPc tail specific protease. tail specific protease
Probab=31.91 E-value=1.4e+02 Score=21.57 Aligned_cols=38 Identities=18% Similarity=0.447 Sum_probs=28.3
Q ss_pred cEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEE--EcC
Q psy9280 51 NVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVL--TGN 95 (143)
Q Consensus 51 ~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVl--tg~ 95 (143)
.|+.|.++. |+....+++.++++++.+. .++.+|| +++
T Consensus 29 ~igYi~i~~------f~~~~~~~~~~~~~~l~~~-~~~~lIiDLR~N 68 (192)
T smart00245 29 NIGYIRIPE------FSEHTSNLVEKAWKKLEKT-NVEGLILDLRNN 68 (192)
T ss_pred cEEEEEEeE------EChhhHHHHHHHHHHHHhC-CCcEEEEEecCC
Confidence 688888854 4555778889999999755 5788988 554
No 182
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=31.83 E-value=1.5e+02 Score=21.86 Aligned_cols=38 Identities=18% Similarity=0.271 Sum_probs=27.5
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEE
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLT 93 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVlt 93 (143)
++.|+.|- +.+|.....++.+.+.++..+...-++++|
T Consensus 135 lllLDEPt--~gLD~~~~~~l~~~l~~~~~~~~~tii~~s 172 (230)
T TIGR01184 135 VLLLDEPF--GALDALTRGNLQEELMQIWEEHRVTVLMVT 172 (230)
T ss_pred EEEEcCCC--cCCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 56677774 999999999999999988654333333334
No 183
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=31.78 E-value=2.1e+02 Score=21.15 Aligned_cols=59 Identities=17% Similarity=0.246 Sum_probs=35.8
Q ss_pred CCHHHHHHHHHHHHHHhcCCCeeEEEE--EcCCCCccCCCCcchhhhhhhhhhHHhHHHHHHHHHhcCCCcEEEEEecCC
Q psy9280 66 LCDALVSEVAAAVQQFDQDSSVAAIVL--TGNEKAFAAGADIKEMLNQTYAANVKTGLLEHWDNITKAKKPVIAAVNGYA 143 (143)
Q Consensus 66 l~~~~~~el~~~l~~~~~d~~vr~vVl--tg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~IAav~G~a 143 (143)
++.+.-+++...|..++.+...+-+.+ -+.|+..-+| ...+..|...+.|+...+.|.|
T Consensus 34 i~~~~a~~ii~~Ll~l~~~~~~~~I~l~INSpGG~v~~g-------------------~aIyd~m~~~~~~V~t~~~G~A 94 (196)
T PRK12551 34 VTSDSANRIVAQLLFLEAEDPEKDIYLYINSPGGSVYDG-------------------LGIFDTMQHVKPDVHTVCVGLA 94 (196)
T ss_pred ecHHHHHHHHHHHHHhhccCCCCCEEEEEeCCCcchhhH-------------------HHHHHHHHhcCCCEEEEEEEEe
Confidence 788889999999988875433233333 3444332222 3445566666777777776654
No 184
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=31.77 E-value=1.4e+02 Score=22.98 Aligned_cols=39 Identities=15% Similarity=0.304 Sum_probs=29.5
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
++.|+.|- +.+|.....++.+.+.++.......+|++|-
T Consensus 166 illlDEPt--~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH 204 (286)
T PRK13646 166 IIVLDEPT--AGLDPQSKRQVMRLLKSLQTDENKTIILVSH 204 (286)
T ss_pred EEEEECCc--ccCCHHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 56778875 9999999999999999986544444555554
No 185
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=31.68 E-value=1.5e+02 Score=21.55 Aligned_cols=39 Identities=13% Similarity=0.217 Sum_probs=27.9
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
.+-|+.|- +.+|.....++.+.+.++..+...-++++|-
T Consensus 152 lllLDEPt--~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH 190 (220)
T cd03293 152 VLLLDEPF--SALDALTREQLQEELLDIWRETGKTVLLVTH 190 (220)
T ss_pred EEEECCCC--CCCCHHHHHHHHHHHHHHHHHcCCEEEEEec
Confidence 56677774 9999999999999999885443333444443
No 186
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=31.59 E-value=1.4e+02 Score=21.44 Aligned_cols=39 Identities=18% Similarity=0.287 Sum_probs=27.9
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
.+-|+.|- +.+|....+++.+.+.++..+...-+|++|-
T Consensus 151 llllDEPt--~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH 189 (213)
T cd03301 151 VFLMDEPL--SNLDAKLRVQMRAELKRLQQRLGTTTIYVTH 189 (213)
T ss_pred EEEEcCCc--ccCCHHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 56677775 8999999999999999886543333444443
No 187
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=31.41 E-value=1.5e+02 Score=22.30 Aligned_cols=39 Identities=15% Similarity=0.309 Sum_probs=28.8
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
++-|+.|- +.+|....+++.+.+.++..+...-+|++|.
T Consensus 172 llllDEPt--~~LD~~~~~~l~~~l~~~~~~~~~tii~isH 210 (258)
T PRK11701 172 LVFMDEPT--GGLDVSVQARLLDLLRGLVRELGLAVVIVTH 210 (258)
T ss_pred EEEEcCCc--ccCCHHHHHHHHHHHHHHHHhcCcEEEEEeC
Confidence 56777775 9999999999999999886543433444444
No 188
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=31.20 E-value=1.4e+02 Score=21.93 Aligned_cols=39 Identities=18% Similarity=0.300 Sum_probs=28.4
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
++-|+.|- +.+|....+.+.+.+.++..+...-+|++|-
T Consensus 165 llllDEPt--~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH 203 (241)
T cd03256 165 LILADEPV--ASLDPASSRQVMDLLKRINREEGITVIVSLH 203 (241)
T ss_pred EEEEeCcc--ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 56677774 9999999999999999986543433444444
No 189
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=30.86 E-value=1.4e+02 Score=22.62 Aligned_cols=40 Identities=10% Similarity=0.177 Sum_probs=29.0
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 53 GLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 53 ~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
-++-|+.|- +.+|....+.+.+.+.++......-+|++|-
T Consensus 169 ~lllLDEPt--~~LD~~~~~~l~~~l~~~~~~~g~tviivsH 208 (267)
T PRK15112 169 KVIIADEAL--ASLDMSMRSQLINLMLELQEKQGISYIYVTQ 208 (267)
T ss_pred CEEEEcCCc--ccCCHHHHHHHHHHHHHHHHHcCcEEEEEeC
Confidence 356777875 9999999999999999986543333444444
No 190
>PRK10908 cell division protein FtsE; Provisional
Probab=30.75 E-value=1.7e+02 Score=21.29 Aligned_cols=38 Identities=21% Similarity=0.367 Sum_probs=27.4
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
.+-|+.|- +.+|....+++.+.+.++..+ ..-++++|-
T Consensus 158 llllDEPt--~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH 195 (222)
T PRK10908 158 VLLADEPT--GNLDDALSEGILRLFEEFNRV-GVTVLMATH 195 (222)
T ss_pred EEEEeCCC--CcCCHHHHHHHHHHHHHHHHC-CCEEEEEeC
Confidence 56677774 999999999999999998644 333344443
No 191
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=30.65 E-value=1.5e+02 Score=22.37 Aligned_cols=39 Identities=8% Similarity=0.158 Sum_probs=28.8
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
.+-|+.|- +.+|....+.+.+.+.++......-+|++|-
T Consensus 164 llllDEPt--~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH 202 (265)
T PRK10253 164 IMLLDEPT--TWLDISHQIDLLELLSELNREKGYTLAAVLH 202 (265)
T ss_pred EEEEeCcc--ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 56677775 9999999999999999986543434444454
No 192
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=30.61 E-value=1.6e+02 Score=21.58 Aligned_cols=39 Identities=18% Similarity=0.225 Sum_probs=27.9
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
++-|+.|- +.+|....+++.+.+.++..+...-+|++|-
T Consensus 166 lllLDEPt--~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH 204 (233)
T PRK11629 166 LVLADEPT--GNLDARNADSIFQLLGELNRLQGTAFLVVTH 204 (233)
T ss_pred EEEEeCCC--CCCCHHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 56677774 8999999999999999886543333444444
No 193
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=30.57 E-value=1.8e+02 Score=20.48 Aligned_cols=39 Identities=23% Similarity=0.324 Sum_probs=27.4
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 53 GLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 53 ~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
-.+-|+.|- +.+|......+.+.+.++..+.. +.++++.
T Consensus 120 ~llilDEP~--~~LD~~~~~~l~~~l~~~~~~~~-~tiii~s 158 (178)
T cd03229 120 DVLLLDEPT--SALDPITRREVRALLKSLQAQLG-ITVVLVT 158 (178)
T ss_pred CEEEEeCCc--ccCCHHHHHHHHHHHHHHHHhcC-CEEEEEe
Confidence 356677774 88999999999999998865423 3444443
No 194
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=30.34 E-value=1.8e+02 Score=21.06 Aligned_cols=38 Identities=18% Similarity=0.358 Sum_probs=27.7
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
.+-|+.|- +.+|....+++.+.+.++... ..-+|++|-
T Consensus 159 llllDEPt--~~LD~~~~~~l~~~l~~~~~~-~~tii~vsH 196 (216)
T TIGR00960 159 LLLADEPT--GNLDPELSRDIMRLFEEFNRR-GTTVLVATH 196 (216)
T ss_pred EEEEeCCC--CcCCHHHHHHHHHHHHHHHHC-CCEEEEEeC
Confidence 56677774 999999999999999998643 333444444
No 195
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=30.32 E-value=1.4e+02 Score=22.06 Aligned_cols=38 Identities=18% Similarity=0.306 Sum_probs=27.9
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
.+-|+.|- +.+|....+.+.+.+.++..... +.||++.
T Consensus 156 llllDEPt--~~LD~~~~~~l~~~L~~~~~~~g-~tvii~s 193 (242)
T cd03295 156 LLLMDEPF--GALDPITRDQLQEEFKRLQQELG-KTIVFVT 193 (242)
T ss_pred EEEecCCc--ccCCHHHHHHHHHHHHHHHHHcC-CEEEEEe
Confidence 56677774 99999999999999999865433 3444443
No 196
>PF11215 DUF3010: Protein of unknown function (DUF3010); InterPro: IPR021378 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=30.26 E-value=2e+02 Score=20.25 Aligned_cols=48 Identities=21% Similarity=0.259 Sum_probs=33.5
Q ss_pred cEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc--CCCCccCCC
Q psy9280 51 NVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG--NEKAFAAGA 103 (143)
Q Consensus 51 ~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg--~g~~FsaG~ 103 (143)
.+..++|+++ -+.+-+.++...+..+-+|-.+--|||.- ..+-|..|+
T Consensus 31 r~~k~~l~~~-----~~~~~vr~Fq~~f~kl~~dy~Vd~VvIk~R~~KGKfAGga 80 (138)
T PF11215_consen 31 RVRKFSLSDD-----NSTEEVRKFQFTFAKLMEDYKVDKVVIKERATKGKFAGGA 80 (138)
T ss_pred ceeEEEcCCC-----ccHHHHHHHHHHHHHHHHHcCCCEEEEEecccCCCccCCc
Confidence 3555666554 36788889999999998888888888854 334465554
No 197
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=30.18 E-value=2.4e+02 Score=22.41 Aligned_cols=43 Identities=9% Similarity=0.270 Sum_probs=31.8
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCC
Q psy9280 52 VGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNE 96 (143)
Q Consensus 52 V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g 96 (143)
|..+++..... .-.+.+.++.+-..++++.. ...-++||||+.
T Consensus 67 v~~~~~~~h~~-~~~~~~hl~~~y~~~~~i~~-~~~DG~IITGAp 109 (302)
T PRK05368 67 IHLLRIDSHES-KNTPAEHLENFYCTFEDIKD-EKFDGLIITGAP 109 (302)
T ss_pred EEEEecCCcCC-CCCCHHHHHHhccCHHHhcc-CCCCEEEEcCCC
Confidence 44566655543 34567888999999999864 558899999975
No 198
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=30.17 E-value=1.7e+02 Score=21.78 Aligned_cols=39 Identities=13% Similarity=0.346 Sum_probs=28.7
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
.+-|+.|- +.+|....+.+.+.+.++.+....-+|++|-
T Consensus 174 llllDEPt--~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH 212 (255)
T PRK11300 174 ILMLDEPA--AGLNPKETKELDELIAELRNEHNVTVLLIEH 212 (255)
T ss_pred EEEEcCCc--cCCCHHHHHHHHHHHHHHHhhcCCEEEEEeC
Confidence 56777774 9999999999999999986543443444444
No 199
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=30.13 E-value=1.6e+02 Score=21.66 Aligned_cols=40 Identities=23% Similarity=0.264 Sum_probs=28.6
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcC
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGN 95 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~ 95 (143)
.+-|+.|- +.+|....+++.+.+.++.+....-+|++|-.
T Consensus 153 llllDEP~--~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~ 192 (236)
T TIGR03864 153 LLLLDEPT--VGLDPASRAAIVAHVRALCRDQGLSVLWATHL 192 (236)
T ss_pred EEEEcCCc--cCCCHHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 46677775 99999999999999999864333334444443
No 200
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=29.95 E-value=1.5e+02 Score=21.86 Aligned_cols=39 Identities=13% Similarity=0.266 Sum_probs=28.1
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
.+-|+.|- +.+|....+.+.+.+.++..+...-+|++|-
T Consensus 166 llllDEPt--~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH 204 (243)
T TIGR02315 166 LILADEPI--ASLDPKTSKQVMDYLKRINKEDGITVIINLH 204 (243)
T ss_pred EEEEeCCc--ccCCHHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 46677774 9999999999999999886543333444454
No 201
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=29.80 E-value=1.9e+02 Score=20.65 Aligned_cols=37 Identities=16% Similarity=0.289 Sum_probs=27.8
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
.+-|+.|- +.+|....+.+.+.+.++.+. . +.+|++.
T Consensus 132 illlDEP~--~~LD~~~~~~l~~~l~~~~~~-~-~tiii~s 168 (194)
T cd03213 132 LLFLDEPT--SGLDSSSALQVMSLLRRLADT-G-RTIICSI 168 (194)
T ss_pred EEEEeCCC--cCCCHHHHHHHHHHHHHHHhC-C-CEEEEEe
Confidence 56677775 999999999999999998643 3 4455543
No 202
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=29.50 E-value=1.6e+02 Score=23.33 Aligned_cols=39 Identities=13% Similarity=0.338 Sum_probs=30.3
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
+|.++.|- ++||.....++.+.|.++..+...-+|++|-
T Consensus 179 llilDEPt--s~LD~~~~~~i~~lL~~l~~~~g~tii~itH 217 (330)
T PRK15093 179 LLIADEPT--NAMEPTTQAQIFRLLTRLNQNNNTTILLISH 217 (330)
T ss_pred EEEEeCCC--CcCCHHHHHHHHHHHHHHHHhcCCEEEEEEC
Confidence 56677774 9999999999999999997654555555564
No 203
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=29.48 E-value=1.6e+02 Score=22.35 Aligned_cols=38 Identities=21% Similarity=0.283 Sum_probs=26.8
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEE
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLT 93 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVlt 93 (143)
++-|+.|- +.+|......+.+.+.++..+...-+|++|
T Consensus 154 lllLDEPt--~~LD~~~~~~l~~~L~~~~~~~~~tviivs 191 (257)
T PRK11247 154 LLLLDEPL--GALDALTRIEMQDLIESLWQQHGFTVLLVT 191 (257)
T ss_pred EEEEeCCC--CCCCHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 46677774 999999999999999887543333333333
No 204
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=29.36 E-value=1.6e+02 Score=21.56 Aligned_cols=38 Identities=16% Similarity=0.274 Sum_probs=27.8
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
.+-|+.|- +.+|......+.+.+.++..+... .|+++.
T Consensus 161 lllLDEP~--~~LD~~~~~~l~~~l~~~~~~~~~-tvii~s 198 (233)
T cd03258 161 VLLCDEAT--SALDPETTQSILALLRDINRELGL-TIVLIT 198 (233)
T ss_pred EEEecCCC--CcCCHHHHHHHHHHHHHHHHHcCC-EEEEEe
Confidence 56677774 999999999999999988654333 444443
No 205
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=29.34 E-value=1.5e+02 Score=22.59 Aligned_cols=39 Identities=15% Similarity=0.314 Sum_probs=28.5
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
.+-|+.|- +.+|.....+|.+.+.++..+...-+|++|-
T Consensus 165 llllDEPt--~gLD~~~~~~l~~~l~~l~~~~g~tillvtH 203 (280)
T PRK13633 165 CIIFDEPT--AMLDPSGRREVVNTIKELNKKYGITIILITH 203 (280)
T ss_pred EEEEeCCc--ccCCHHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 56677775 9999999999999999986543333444443
No 206
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=29.29 E-value=1.6e+02 Score=22.68 Aligned_cols=39 Identities=13% Similarity=0.272 Sum_probs=29.0
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
++-|+.|- +.+|.....++.+.+.++..+....+|++|.
T Consensus 166 llllDEPt--~~LD~~~~~~l~~~L~~l~~~~g~tviiitH 204 (290)
T PRK13634 166 VLVLDEPT--AGLDPKGRKEMMEMFYKLHKEKGLTTVLVTH 204 (290)
T ss_pred EEEEECCc--ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 56777774 9999999999999999986543444444444
No 207
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=29.29 E-value=1.6e+02 Score=22.19 Aligned_cols=28 Identities=21% Similarity=0.201 Sum_probs=23.6
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQ 83 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~ 83 (143)
.+-|+.|- +.+|....+.+.+.+.++..
T Consensus 149 lllLDEPt--~~LD~~~~~~l~~~L~~~~~ 176 (255)
T PRK11248 149 LLLLDEPF--GALDAFTREQMQTLLLKLWQ 176 (255)
T ss_pred EEEEeCCC--ccCCHHHHHHHHHHHHHHHH
Confidence 56778875 99999999999999998743
No 208
>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6.3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....
Probab=29.16 E-value=69 Score=27.71 Aligned_cols=24 Identities=38% Similarity=0.599 Sum_probs=16.0
Q ss_pred hHHHHHHHHHhcCCCcEEEEEecC
Q psy9280 119 TGLLEHWDNITKAKKPVIAAVNGY 142 (143)
Q Consensus 119 ~~~~~~~~~l~~~~kP~IAav~G~ 142 (143)
..+.+-++.+..+.+|+|.|||=+
T Consensus 358 ~NL~rHIeNik~fGvpvVVAIN~F 381 (557)
T PF01268_consen 358 ANLERHIENIKKFGVPVVVAINRF 381 (557)
T ss_dssp HHHHHHHHHHHCTT--EEEEEE--
T ss_pred HHHHHHHHHHHhcCCCeEEEecCC
Confidence 345555688899999999999843
No 209
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=29.14 E-value=1.7e+02 Score=21.84 Aligned_cols=40 Identities=18% Similarity=0.356 Sum_probs=29.7
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcC
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGN 95 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~ 95 (143)
.+-|+.|- +.+|......+.+.+.++......-+|++|-.
T Consensus 167 llllDEP~--~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~ 206 (252)
T TIGR03005 167 VMLFDEVT--SALDPELVGEVLNVIRRLASEHDLTMLLVTHE 206 (252)
T ss_pred EEEEeCCc--ccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Confidence 56778875 89999999999999998865434444555543
No 210
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=29.13 E-value=1.6e+02 Score=21.71 Aligned_cols=39 Identities=18% Similarity=0.305 Sum_probs=28.6
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
.+-|+.|- +.+|....+.+.+.+.++..+...-+|++|-
T Consensus 157 llllDEP~--~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH 195 (239)
T cd03296 157 VLLLDEPF--GALDAKVRKELRRWLRRLHDELHVTTVFVTH 195 (239)
T ss_pred EEEEcCCc--ccCCHHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 56778875 9999999999999999986543333444444
No 211
>PF01990 ATP-synt_F: ATP synthase (F/14-kDa) subunit; InterPro: IPR008218 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit F found in the V1 complex of V-ATPases (both eukaryotic and bacterial), as well as in the A1 complex of A-ATPases. Subunit F is a 16 kDa protein that is required for the assembly and activity of V-ATPase, and has a potential role in the differential targeting and regulation of the enzyme for specific organelles. This subunit is not necessary for the rotation of the ATPase V1 rotor, but it does promote catalysis []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 2D00_E 3A5C_P 3J0J_H 3A5D_H 2OV6_A 2QAI_B 3AON_B 2I4R_A.
Probab=29.10 E-value=68 Score=20.44 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 71 VSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 71 ~~el~~~l~~~~~d~~vr~vVltg 94 (143)
-+++.++|.++-.++++.+|+++-
T Consensus 27 ~ee~~~~l~~l~~~~~~gIIii~e 50 (95)
T PF01990_consen 27 PEEAEEALKELLKDEDVGIIIITE 50 (95)
T ss_dssp HHHHHHHHHHHHHHTTEEEEEEEH
T ss_pred HHHHHHHHHHHhcCCCccEEEeeH
Confidence 357888888888888898888884
No 212
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=29.04 E-value=1.8e+02 Score=20.30 Aligned_cols=36 Identities=19% Similarity=0.352 Sum_probs=26.3
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEE
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLT 93 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVlt 93 (143)
.+-|+.|- +.+|....+++.+.+.++..+ . ..+++.
T Consensus 116 illlDEPt--~~LD~~~~~~l~~~l~~~~~~-g-~tiii~ 151 (173)
T cd03230 116 LLILDEPT--SGLDPESRREFWELLRELKKE-G-KTILLS 151 (173)
T ss_pred EEEEeCCc--cCCCHHHHHHHHHHHHHHHHC-C-CEEEEE
Confidence 56677774 889999999999999988654 3 344443
No 213
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=29.01 E-value=2e+02 Score=20.37 Aligned_cols=36 Identities=17% Similarity=0.361 Sum_probs=26.7
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEE
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLT 93 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVlt 93 (143)
.+-|+.|- +.+|....+++.+.+.++..+ .. .|++.
T Consensus 148 llllDEPt--~~LD~~~~~~~~~~l~~~~~~-~~-tili~ 183 (190)
T TIGR01166 148 VLLLDEPT--AGLDPAGREQMLAILRRLRAE-GM-TVVIS 183 (190)
T ss_pred EEEEcCCc--ccCCHHHHHHHHHHHHHHHHc-CC-EEEEE
Confidence 56777774 899999999999999988654 33 44443
No 214
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=28.93 E-value=1.7e+02 Score=21.81 Aligned_cols=39 Identities=21% Similarity=0.334 Sum_probs=28.6
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
++-|+.|- +.+|....+++.+.+.++.......+|+++.
T Consensus 169 vlllDEP~--~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH 207 (253)
T TIGR02323 169 LVFMDEPT--GGLDVSVQARLLDLLRGLVRDLGLAVIIVTH 207 (253)
T ss_pred EEEEcCCC--ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 56677774 9999999999999999876543444444454
No 215
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=28.91 E-value=1.6e+02 Score=22.48 Aligned_cols=29 Identities=17% Similarity=0.155 Sum_probs=19.6
Q ss_pred CHHHHHHHHHHHHHHhc-CCCeeEEEEEcC
Q psy9280 67 CDALVSEVAAAVQQFDQ-DSSVAAIVLTGN 95 (143)
Q Consensus 67 ~~~~~~el~~~l~~~~~-d~~vr~vVltg~ 95 (143)
+.+..+.+.++++.+.. .+....||++|.
T Consensus 35 ~~~~~~~l~~~i~~i~~~~~~~D~vvitGD 64 (275)
T PRK11148 35 GVNTWESYQAVLEAIRAQQHEFDLIVATGD 64 (275)
T ss_pred ccCHHHHHHHHHHHHHhhCCCCCEEEECCC
Confidence 34456677777777754 345678999994
No 216
>cd07560 Peptidase_S41_CPP C-terminal processing peptidase; serine protease family S41. The C-terminal processing peptidase (CPP, EC 3.4.21.102) also known as tail-specific protease (tsp), the photosystem II D1 C-terminal processing protease (D1P), and other related S41 protease family members are present in this CD. CPP is synthesized as a precursor form with a carboxyl-terminal extension. It specifically recognizes a C-terminal tripeptide, Xaa-Yaa-Zaa, in which Xaa is preferably Ala or Leu, Yaa is preferably Ala or Tyr and Zaa is preferably Ala, but then cleaves at a variable distance from the C-terminus. The C-terminal carboxylate group is essential, and proteins where this group is amidated are not substrates. This family of proteases contains the PDZ domain that promotes protein-protein interactions and is important for substrate recognition. The active site consists of a serine/lysine catalytic dyad. The bacterial CCP-1 is believed to be important for the degradation of incorrectl
Probab=28.50 E-value=1.5e+02 Score=21.92 Aligned_cols=37 Identities=14% Similarity=0.486 Sum_probs=27.7
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEE--EcC
Q psy9280 52 VGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVL--TGN 95 (143)
Q Consensus 52 V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVl--tg~ 95 (143)
|+.|+++. |+....+++.++++++.... ++.+|| +++
T Consensus 50 igYi~i~s------f~~~~~~~~~~~l~~~~~~~-~~~lIlDLR~N 88 (211)
T cd07560 50 IGYIRITS------FSENTAEELKKALKELKKQG-MKGLILDLRNN 88 (211)
T ss_pred eEEEEEcc------cCchhHHHHHHHHHHHHhcc-CceEEEEcCCC
Confidence 88888864 44567789999999987553 788888 554
No 217
>TIGR02832 spo_yunB sporulation protein YunB. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. Mutation of this sigma E-regulated gene, designated yunB, has been shown to cause a sporulation defect.
Probab=28.39 E-value=49 Score=24.76 Aligned_cols=48 Identities=17% Similarity=0.344 Sum_probs=38.0
Q ss_pred cCCCcccE-EEEEecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhc
Q psy9280 34 STVKFENI-LVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQ 83 (143)
Q Consensus 34 ~~~~~~~v-~ve~~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~ 83 (143)
..-+|+.+ .++++ .++.|..+++|... .|.+-.+...++.+.|.+++.
T Consensus 59 ~~~~y~dlI~i~kd-~~G~I~~iq~nT~~-~N~i~s~~~~~vq~~L~~l~~ 107 (204)
T TIGR02832 59 QGFDYNDLIEIETD-ENGKITLIQANTLL-LNKLASNITLRVQEKLNELGE 107 (204)
T ss_pred cCCCHHHEEEEEEC-CCCcEEEEEcCHHH-HHHHHHHHHHHHHHHHHHhhc
Confidence 44455554 45554 36789999999885 899999999999999999975
No 218
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=28.34 E-value=1.7e+02 Score=22.27 Aligned_cols=40 Identities=20% Similarity=0.260 Sum_probs=29.1
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcC
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGN 95 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~ 95 (143)
++-|+.|- +.+|....+++.+.+.++......-+|++|-.
T Consensus 172 lllLDEPt--~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~ 211 (268)
T PRK10419 172 LLILDEAV--SNLDLVLQAGVIRLLKKLQQQFGTACLFITHD 211 (268)
T ss_pred EEEEeCCC--cccCHHHHHHHHHHHHHHHHHcCcEEEEEECC
Confidence 56778875 99999999999999998865434344444543
No 219
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=28.27 E-value=1.7e+02 Score=22.06 Aligned_cols=41 Identities=24% Similarity=0.314 Sum_probs=29.6
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcC
Q psy9280 53 GLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGN 95 (143)
Q Consensus 53 ~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~ 95 (143)
-++-|+.|- +.+|....+++.+.+.++..+...-+|++|-.
T Consensus 167 ~lllLDEPt--~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~ 207 (265)
T PRK10575 167 RCLLLDEPT--SALDIAHQVDVLALVHRLSQERGLTVIAVLHD 207 (265)
T ss_pred CEEEEcCCc--ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 356778875 99999999999999999865434334444543
No 220
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=28.22 E-value=2.1e+02 Score=20.45 Aligned_cols=38 Identities=16% Similarity=0.292 Sum_probs=27.6
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 53 GLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 53 ~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
-.+-|+.|- +.+|....+.+.+.+.++..+ . ..+|++.
T Consensus 154 ~llllDEPt--~~LD~~~~~~l~~~l~~~~~~-~-~tii~~s 191 (206)
T TIGR03608 154 PLILADEPT--GSLDPKNRDEVLDLLLELNDE-G-KTIIIVT 191 (206)
T ss_pred CEEEEeCCc--CCCCHHHHHHHHHHHHHHHhc-C-CEEEEEe
Confidence 356777775 899999999999999988643 3 3444443
No 221
>KOG3997|consensus
Probab=28.14 E-value=79 Score=24.33 Aligned_cols=54 Identities=26% Similarity=0.284 Sum_probs=37.4
Q ss_pred cEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcch
Q psy9280 51 NVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKE 107 (143)
Q Consensus 51 ~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~ 107 (143)
+|.++.=|=....|.+. ..+++|...+..++....++|.+=|= ..|-+|.|++.
T Consensus 139 ~V~ivlEnMAGqGn~vG-~tfeelk~ii~~Ikdk~RigVClDTC--H~FaaGyDI~T 192 (281)
T KOG3997|consen 139 NVIIVLENMAGQGNSVG-GTFEELKFIIGKIKDKSRIGVCLDTC--HTFAAGYDIRT 192 (281)
T ss_pred ceEEEeecccCCCCccc-ccHHHHHHHHHhhcchhhheeeHhhh--hhhccccccch
Confidence 56655555555678888 56688888888887666555554443 46889999864
No 222
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=28.01 E-value=1.8e+02 Score=21.32 Aligned_cols=39 Identities=26% Similarity=0.355 Sum_probs=27.9
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
.+-|+.|- +.+|....+.+.+.+.++......-+|++|-
T Consensus 150 lllLDEP~--~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH 188 (232)
T PRK10771 150 ILLLDEPF--SALDPALRQEMLTLVSQVCQERQLTLLMVSH 188 (232)
T ss_pred EEEEeCCc--ccCCHHHHHHHHHHHHHHHHhcCCEEEEEEC
Confidence 46677774 9999999999999999886543333344443
No 223
>PF06935 DUF1284: Protein of unknown function (DUF1284); InterPro: IPR009702 This family consists of several hypothetical bacterial and archaeal proteins of around 130 residues in length. The function of this family is unknown, although it is thought that they may be iron-sulphur binding proteins.
Probab=27.93 E-value=1.3e+02 Score=19.68 Aligned_cols=30 Identities=13% Similarity=0.289 Sum_probs=24.4
Q ss_pred CCHHHHHHHHHHHHHHhcCCCeeEEEEEcC
Q psy9280 66 LCDALVSEVAAAVQQFDQDSSVAAIVLTGN 95 (143)
Q Consensus 66 l~~~~~~el~~~l~~~~~d~~vr~vVltg~ 95 (143)
.+.+|.+-+.+.+..+.++++..+-|++|.
T Consensus 2 YS~~Fv~Nm~~Iv~~l~~~~~~~I~iv~~~ 31 (103)
T PF06935_consen 2 YSPEFVENMKKIVERLRNDPGEPIEIVDGP 31 (103)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCEEEEECc
Confidence 478899999999999977777777777764
No 224
>COG4637 Predicted ATPase [General function prediction only]
Probab=27.70 E-value=1.6e+02 Score=24.08 Aligned_cols=38 Identities=26% Similarity=0.360 Sum_probs=30.6
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 53 GLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 53 ~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
..|.+|-|+ +.+.++++.+|...+..+.... .++|.|-
T Consensus 292 ~ll~ldEPE--~sLHP~lL~~La~~~~sAak~s--Qv~VsTH 329 (373)
T COG4637 292 PLLLLDEPE--TSLHPDLLPALAELMRSAAKRS--QVIVSTH 329 (373)
T ss_pred ceeEecCcc--cccCHhHHHHHHHHHHHhhccc--eEEEEeC
Confidence 467788887 9999999999999999987665 4555554
No 225
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=27.54 E-value=1.8e+02 Score=22.15 Aligned_cols=39 Identities=10% Similarity=0.237 Sum_probs=28.9
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
.+.|+.|- +.+|....+++.+.+.++.++...-+|++|-
T Consensus 161 llllDEPt--~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH 199 (277)
T PRK13642 161 IIILDEST--SMLDPTGRQEIMRVIHEIKEKYQLTVLSITH 199 (277)
T ss_pred EEEEeCCc--ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 46677774 9999999999999999986543444444454
No 226
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=27.50 E-value=78 Score=23.18 Aligned_cols=59 Identities=14% Similarity=0.180 Sum_probs=35.8
Q ss_pred CCCCHHHHH-HHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchhhhhhhhhhHHhHHHHHHHHHhcCCCcEEEEEe
Q psy9280 64 NALCDALVS-EVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQTYAANVKTGLLEHWDNITKAKKPVIAAVN 140 (143)
Q Consensus 64 Nal~~~~~~-el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~IAav~ 140 (143)
-..+.+.++ -...+++.+-.+.+ ++||-- +..+.. ....|.+.+..+..+++|+||.+|
T Consensus 79 Y~V~v~~le~i~~~al~rA~~~aD--vIIIDE-------------IGpMEl---ks~~f~~~ve~vl~~~kpliatlH 138 (179)
T COG1618 79 YGVNVEGLEEIAIPALRRALEEAD--VIIIDE-------------IGPMEL---KSKKFREAVEEVLKSGKPLIATLH 138 (179)
T ss_pred EEeeHHHHHHHhHHHHHHHhhcCC--EEEEec-------------ccchhh---ccHHHHHHHHHHhcCCCcEEEEEe
Confidence 344555555 35556666555533 566532 222211 114677888889999999999987
No 227
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=27.49 E-value=1.9e+02 Score=21.30 Aligned_cols=39 Identities=15% Similarity=0.251 Sum_probs=29.0
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
.+-|+.|- +.+|....+.+.+.+.++.......+|++|-
T Consensus 150 llllDEPt--~gLD~~~~~~l~~~l~~~~~~~~~tili~tH 188 (235)
T cd03299 150 ILLLDEPF--SALDVRTKEKLREELKKIRKEFGVTVLHVTH 188 (235)
T ss_pred EEEECCCc--ccCCHHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 56678875 8999999999999999986543444444454
No 228
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=27.48 E-value=1.9e+02 Score=21.39 Aligned_cols=40 Identities=18% Similarity=0.312 Sum_probs=28.8
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 53 GLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 53 ~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
-.+-|+.|. +.+|....+.+.+.+.++..+...-+|++|.
T Consensus 150 ~llllDEP~--~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH 189 (237)
T TIGR00968 150 QVLLLDEPF--GALDAKVRKELRSWLRKLHDEVHVTTVFVTH 189 (237)
T ss_pred CEEEEcCCc--ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 346677875 9999999999999999986542333444444
No 229
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=27.48 E-value=2.1e+02 Score=20.57 Aligned_cols=39 Identities=8% Similarity=0.080 Sum_probs=26.8
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
.+-|+.|- +.+|....+.+.+.+.++..+....+|+++.
T Consensus 139 llllDEPt--~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~ 177 (202)
T cd03233 139 VLCWDNST--RGLDSSTALEILKCIRTMADVLKTTTFVSLY 177 (202)
T ss_pred EEEEcCCC--ccCCHHHHHHHHHHHHHHHHhCCCEEEEEEc
Confidence 45667764 8889999999999988886543333444443
No 230
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=27.42 E-value=1.9e+02 Score=21.42 Aligned_cols=39 Identities=15% Similarity=0.273 Sum_probs=28.2
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
.+-|+.|- +.+|....+.+.+.+.++..+...-+|++|-
T Consensus 152 llllDEPt--~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH 190 (241)
T PRK14250 152 VLLLDEPT--SALDPTSTEIIEELIVKLKNKMNLTVIWITH 190 (241)
T ss_pred EEEEeCCc--ccCCHHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 56777775 9999999999999999986543333444444
No 231
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=27.23 E-value=2.3e+02 Score=19.98 Aligned_cols=37 Identities=14% Similarity=0.304 Sum_probs=27.6
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
++-|+.|- +.+|....+++.+.+.++... . +.++++.
T Consensus 125 llllDEP~--~~LD~~~~~~l~~~l~~~~~~-~-~tiii~s 161 (182)
T cd03215 125 VLILDEPT--RGVDVGAKAEIYRLIRELADA-G-KAVLLIS 161 (182)
T ss_pred EEEECCCC--cCCCHHHHHHHHHHHHHHHHC-C-CEEEEEe
Confidence 46677774 999999999999999998643 3 3555544
No 232
>COG2840 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.19 E-value=1.6e+02 Score=21.77 Aligned_cols=35 Identities=14% Similarity=0.323 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCC
Q psy9280 68 DALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGAD 104 (143)
Q Consensus 68 ~~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~D 104 (143)
.+.-.+|.+.|.+.....--.|.||+|.|. |.|.+
T Consensus 107 ~eAr~~L~~Fi~~a~~~~~rcv~VihGkG~--s~g~~ 141 (184)
T COG2840 107 EEARQELGAFIARARAEGLRCVLVIHGKGR--SKGSK 141 (184)
T ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEeCCCc--CCCCc
Confidence 345556667777766554334556699887 66643
No 233
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=27.14 E-value=1.9e+02 Score=21.03 Aligned_cols=38 Identities=21% Similarity=0.336 Sum_probs=27.9
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
.+-|+.|- ..+|.+...++.+.+.++..+.. +.+|+..
T Consensus 162 illlDEP~--~~LD~~~~~~l~~~l~~~~~~~~-~tii~~s 199 (220)
T TIGR02982 162 LVLADEPT--AALDSKSGRDVVELMQKLAREQG-CTILIVT 199 (220)
T ss_pred EEEEeCCC--CcCCHHHHHHHHHHHHHHHHHcC-CEEEEEe
Confidence 46677774 89999999999999998865444 4444443
No 234
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=27.12 E-value=2.2e+02 Score=19.84 Aligned_cols=36 Identities=14% Similarity=0.218 Sum_probs=26.0
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEE
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLT 93 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVlt 93 (143)
++-|+.|- +.+|.....++.+.+.++.+. . +.+++.
T Consensus 117 ~lllDEPt--~~LD~~~~~~l~~~l~~~~~~-~-~tii~~ 152 (173)
T cd03246 117 ILVLDEPN--SHLDVEGERALNQAIAALKAA-G-ATRIVI 152 (173)
T ss_pred EEEEECCc--cccCHHHHHHHHHHHHHHHhC-C-CEEEEE
Confidence 46677774 899999999999999888543 3 344443
No 235
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=27.09 E-value=2.1e+02 Score=19.90 Aligned_cols=36 Identities=11% Similarity=0.254 Sum_probs=27.0
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
.+-|+.|- +.+|....+++.+.+.++.. . +.++++.
T Consensus 117 llllDEP~--~gLD~~~~~~l~~~l~~~~~--~-~tii~~s 152 (171)
T cd03228 117 ILILDEAT--SALDPETEALILEALRALAK--G-KTVIVIA 152 (171)
T ss_pred EEEEECCC--cCCCHHHHHHHHHHHHHhcC--C-CEEEEEe
Confidence 56777774 89999999999999998853 3 4555544
No 236
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=26.99 E-value=2.3e+02 Score=20.30 Aligned_cols=37 Identities=14% Similarity=0.312 Sum_probs=27.1
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
.+-|+.|- +.+|....+++.+.+.++... . +.+|++.
T Consensus 147 llllDEPt--~~LD~~~~~~l~~~l~~~~~~-~-~tii~~s 183 (205)
T cd03226 147 LLIFDEPT--SGLDYKNMERVGELIRELAAQ-G-KAVIVIT 183 (205)
T ss_pred EEEEeCCC--ccCCHHHHHHHHHHHHHHHHC-C-CEEEEEe
Confidence 56777774 999999999999999988543 3 3455543
No 237
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=26.93 E-value=1.8e+02 Score=22.28 Aligned_cols=39 Identities=13% Similarity=0.204 Sum_probs=28.3
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
.+-|+.|- +.+|....+.+.+.+.++..+...-+|++|-
T Consensus 171 lLlLDEPt--~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH 209 (289)
T PRK13645 171 TLVLDEPT--GGLDPKGEEDFINLFERLNKEYKKRIIMVTH 209 (289)
T ss_pred EEEEeCCc--ccCCHHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 56777875 9999999999999999886543333344443
No 238
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=26.84 E-value=1.9e+02 Score=21.75 Aligned_cols=38 Identities=16% Similarity=0.249 Sum_probs=27.3
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEE
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLT 93 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVlt 93 (143)
.+-|+.|- +.||......+.+.+.++..+...-+|++|
T Consensus 136 llllDEPt--~~LD~~~~~~l~~~l~~~~~~~~~tiiivs 173 (246)
T cd03237 136 IYLLDEPS--AYLDVEQRLMASKVIRRFAENNEKTAFVVE 173 (246)
T ss_pred EEEEeCCc--ccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 46677775 999999999999999988654333333334
No 239
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=26.71 E-value=75 Score=21.24 Aligned_cols=23 Identities=22% Similarity=0.421 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 72 SEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 72 ~el~~~l~~~~~d~~vr~vVltg 94 (143)
+++.+.+.++..|+++.++++--
T Consensus 73 ~el~~~i~~lN~D~~V~GIlvq~ 95 (117)
T PF00763_consen 73 EELLELIEKLNEDPSVHGILVQL 95 (117)
T ss_dssp HHHHHHHHHHHH-TT-SEEEEES
T ss_pred HHHHHHHHHHhCCCCCCEEEEcC
Confidence 57888899999999999999965
No 240
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=26.67 E-value=2.1e+02 Score=21.96 Aligned_cols=40 Identities=18% Similarity=0.297 Sum_probs=30.1
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcC
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGN 95 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~ 95 (143)
.|-|+.|- +.+|.....++.+.+.++..+...-+|++|-.
T Consensus 161 lllLDEPt--~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~ 200 (279)
T PRK13635 161 IIILDEAT--SMLDPRGRREVLETVRQLKEQKGITVLSITHD 200 (279)
T ss_pred EEEEeCCc--ccCCHHHHHHHHHHHHHHHHcCCCEEEEEecC
Confidence 56778875 99999999999999999876544445555543
No 241
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=26.61 E-value=2.2e+02 Score=22.14 Aligned_cols=39 Identities=18% Similarity=0.336 Sum_probs=30.3
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 53 GLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 53 ~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
-.+-|+.|- |.||.....++.+.+..+..+.. +.|+++.
T Consensus 156 ~lliLDEPt--~GLDp~~~~~~~~~l~~l~~~g~-~tvliss 194 (293)
T COG1131 156 ELLILDEPT--SGLDPESRREIWELLRELAKEGG-VTILLST 194 (293)
T ss_pred CEEEECCCC--cCCCHHHHHHHHHHHHHHHhCCC-cEEEEeC
Confidence 356777875 99999999999999999987654 4455554
No 242
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=26.58 E-value=2.4e+02 Score=20.12 Aligned_cols=48 Identities=23% Similarity=0.273 Sum_probs=32.7
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADI 105 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl 105 (143)
.+.|+.|- +.+|....+.+.+.+.++..+ . ..+|++.....|-...|.
T Consensus 148 ~lilDEP~--~~LD~~~~~~l~~~l~~~~~~-~-~tiii~sh~~~~~~~~d~ 195 (200)
T PRK13540 148 LWLLDEPL--VALDELSLLTIITKIQEHRAK-G-GAVLLTSHQDLPLNKADY 195 (200)
T ss_pred EEEEeCCC--cccCHHHHHHHHHHHHHHHHc-C-CEEEEEeCCchhccccch
Confidence 56677775 999999999999999998543 3 345555544444444443
No 243
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=26.54 E-value=48 Score=24.64 Aligned_cols=30 Identities=10% Similarity=0.246 Sum_probs=19.1
Q ss_pred CHHHHHHHHHHHHHHhcCCCeeEEEEEcCC
Q psy9280 67 CDALVSEVAAAVQQFDQDSSVAAIVLTGNE 96 (143)
Q Consensus 67 ~~~~~~el~~~l~~~~~d~~vr~vVltg~g 96 (143)
...+..++.++|.+|..++...+.|+||..
T Consensus 17 ~~~~~~~~~~~L~~La~~~~~~v~IvSGR~ 46 (235)
T PF02358_consen 17 AAVPPPELRELLRALAADPNNTVAIVSGRS 46 (235)
T ss_dssp G----HHHHHHHHHHHHHSE--EEEE-SS-
T ss_pred ccCCCHHHHHHHHHHhccCCCEEEEEEeCC
Confidence 345667888999999999888899999964
No 244
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=26.49 E-value=2.5e+02 Score=20.15 Aligned_cols=39 Identities=15% Similarity=0.232 Sum_probs=27.0
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
.+-|+.|- +.+|....+.+.+.+.++..+...-++++|-
T Consensus 92 lllLDEPt--s~LD~~~~~~l~~~l~~~~~~~~~tiiivsH 130 (177)
T cd03222 92 FYLFDEPS--AYLDIEQRLNAARAIRRLSEEGKKTALVVEH 130 (177)
T ss_pred EEEEECCc--ccCCHHHHHHHHHHHHHHHHcCCCEEEEEEC
Confidence 45567774 8999999999999998886543233444444
No 245
>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti
Probab=26.35 E-value=1.5e+02 Score=21.56 Aligned_cols=43 Identities=14% Similarity=0.204 Sum_probs=30.9
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCC
Q psy9280 53 GLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEK 97 (143)
Q Consensus 53 ~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~ 97 (143)
..+....+...| .+.+.++..-..++++. +...-++||||++-
T Consensus 31 ~~~~~~~h~~~~-~~~~~l~~~Y~~~~~i~-~~~yDGlIITGApv 73 (175)
T cd03131 31 TFIRPSSHSSKN-TPPEHVNRFYETFDDIR-DAKFDGLIVTGAPV 73 (175)
T ss_pred EEEecCCCCCCC-CCHHHHHHhccCHHHcc-ccCCCEEEEeCCCc
Confidence 344444444345 48889999999999886 45578999999763
No 246
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=26.20 E-value=2.4e+02 Score=20.18 Aligned_cols=37 Identities=32% Similarity=0.278 Sum_probs=27.3
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
.+-|+.|- +.+|....+++.+.+.++..+ .. .+|+++
T Consensus 146 llllDEPt--~~LD~~~~~~l~~~l~~~~~~-g~-tiii~s 182 (201)
T cd03231 146 LWILDEPT--TALDKAGVARFAEAMAGHCAR-GG-MVVLTT 182 (201)
T ss_pred EEEEeCCC--CCCCHHHHHHHHHHHHHHHhC-CC-EEEEEe
Confidence 56778875 999999999999999887643 33 444443
No 247
>PRK14558 pyrH uridylate kinase; Provisional
Probab=26.18 E-value=1e+02 Score=22.97 Aligned_cols=34 Identities=6% Similarity=0.056 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCC
Q psy9280 64 NALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKA 98 (143)
Q Consensus 64 Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~ 98 (143)
-.++.+.++.+.+.+.++.+. ..+++|++|.|.+
T Consensus 18 ~~~~~~~i~~la~~i~~~~~~-g~~viiV~GgGs~ 51 (231)
T PRK14558 18 KGFDPERVNYLVNEIKSVVEY-GFKIGIVIGAGNL 51 (231)
T ss_pred CCcCHHHHHHHHHHHHHHHHC-CCeEEEEECccHH
Confidence 469999999999999988543 4678888877653
No 248
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=26.15 E-value=2.1e+02 Score=21.34 Aligned_cols=38 Identities=13% Similarity=0.203 Sum_probs=27.9
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
.+-|+.|- +.+|....+.+.+.+.++... ..-+|++|-
T Consensus 159 llllDEP~--~~LD~~~~~~l~~~l~~l~~~-~~tiii~tH 196 (255)
T PRK11231 159 VVLLDEPT--TYLDINHQVELMRLMRELNTQ-GKTVVTVLH 196 (255)
T ss_pred EEEEcCCc--ccCCHHHHHHHHHHHHHHHHC-CCEEEEEEC
Confidence 56777875 999999999999999988643 333444454
No 249
>PF04019 DUF359: Protein of unknown function (DUF359); InterPro: IPR007164 This is family of archaebacterial proteins, which are about 170 amino acids in length. They have no known function. The most conserved portion of the protein contains the sequence GEEDL that may be important for its function.
Probab=25.95 E-value=2.2e+02 Score=19.42 Aligned_cols=40 Identities=15% Similarity=0.406 Sum_probs=28.0
Q ss_pred cEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCC
Q psy9280 51 NVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNE 96 (143)
Q Consensus 51 ~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g 96 (143)
+-..++..||+ -.++.+.++.+.+++.. +. -..|++.|..
T Consensus 33 ~~~~i~v~NPp--G~It~el~~ai~~a~~~---~~-~~~I~V~GEE 72 (121)
T PF04019_consen 33 FYRVIEVKNPP--GTITEELIEAIKKALES---GK-PVVIFVDGEE 72 (121)
T ss_pred CceEEEEECCC--CcccHHHHHHHHHHHhC---CC-CEEEEEeChH
Confidence 34678888987 78999999999888543 22 2355557754
No 250
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=25.92 E-value=1.9e+02 Score=22.12 Aligned_cols=40 Identities=18% Similarity=0.261 Sum_probs=29.3
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 53 GLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 53 ~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
-.+-|+.|- +.+|....+.+.+.+.++..+...-+|+++-
T Consensus 174 ~lllLDEPt--~~LD~~~~~~l~~~l~~~~~~~~~tviiisH 213 (272)
T PRK13547 174 RYLLLDEPT--AALDLAHQHRLLDTVRRLARDWNLGVLAIVH 213 (272)
T ss_pred CEEEEcCcc--ccCCHHHHHHHHHHHHHHHHhcCCEEEEEEC
Confidence 456677774 9999999999999999987653433444454
No 251
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=25.89 E-value=1.5e+02 Score=23.51 Aligned_cols=38 Identities=18% Similarity=0.511 Sum_probs=27.4
Q ss_pred cEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEE--EcC
Q psy9280 51 NVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVL--TGN 95 (143)
Q Consensus 51 ~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVl--tg~ 95 (143)
.|+.|.++. |+....+++.+++..++.. +++.+|| +++
T Consensus 152 ~igYi~i~~------f~~~~~~~~~~~l~~l~~~-~~~~lIiDLR~N 191 (334)
T TIGR00225 152 SVGYIRISS------FSEHTTEDVKKALDKLEKK-NAKGYILDLRGN 191 (334)
T ss_pred EEEEEEEEe------cccchHHHHHHHHHHHHhc-cCceEEEEcCCC
Confidence 488888865 4445677888999888653 5789998 554
No 252
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=25.63 E-value=2.1e+02 Score=21.79 Aligned_cols=39 Identities=18% Similarity=0.240 Sum_probs=28.5
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
++.|+.|- +.+|....+++.+.+.++..+...-+|++|-
T Consensus 158 llilDEPt--~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH 196 (277)
T PRK13652 158 VLVLDEPT--AGLDPQGVKELIDFLNDLPETYGMTVIFSTH 196 (277)
T ss_pred EEEEeCCc--ccCCHHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 56778875 9999999999999999886643333444443
No 253
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=25.61 E-value=2.3e+02 Score=20.28 Aligned_cols=38 Identities=13% Similarity=0.250 Sum_probs=27.4
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
.+-|+.|- +.+|....+.+.+.+.++... ..-+|++|-
T Consensus 157 llllDEPt--~~LD~~~~~~~~~~l~~~~~~-~~tiiivtH 194 (214)
T cd03292 157 ILIADEPT--GNLDPDTTWEIMNLLKKINKA-GTTVVVATH 194 (214)
T ss_pred EEEEeCCC--CcCCHHHHHHHHHHHHHHHHc-CCEEEEEeC
Confidence 56677775 999999999999999988543 333344443
No 254
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=25.60 E-value=2.5e+02 Score=19.96 Aligned_cols=40 Identities=10% Similarity=0.218 Sum_probs=28.9
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcC
Q psy9280 53 GLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGN 95 (143)
Q Consensus 53 ~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~ 95 (143)
-.+-|+.|- +.+|.+....+.+.+.++.+. ..-++++|-.
T Consensus 128 ~vlllDEP~--~~LD~~~~~~l~~~l~~~~~~-~~tiiivtH~ 167 (192)
T cd03232 128 SILFLDEPT--SGLDSQAAYNIVRFLKKLADS-GQAILCTIHQ 167 (192)
T ss_pred cEEEEeCCC--cCCCHHHHHHHHHHHHHHHHc-CCEEEEEEcC
Confidence 356777875 999999999999999998653 3334444543
No 255
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=25.58 E-value=2.2e+02 Score=20.43 Aligned_cols=37 Identities=16% Similarity=0.359 Sum_probs=27.8
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
.+-|+.|- +.+|....+++.+.+.++... . +.+|++.
T Consensus 147 llllDEPt--~~LD~~~~~~l~~~l~~~~~~-~-~tii~~t 183 (208)
T cd03268 147 LLILDEPT--NGLDPDGIKELRELILSLRDQ-G-ITVLISS 183 (208)
T ss_pred EEEECCCc--ccCCHHHHHHHHHHHHHHHHC-C-CEEEEEc
Confidence 56777775 999999999999999988653 3 3455544
No 256
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=25.51 E-value=1.6e+02 Score=18.89 Aligned_cols=27 Identities=15% Similarity=0.235 Sum_probs=15.1
Q ss_pred CCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 66 LCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 66 l~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
++.++.++|...++.+++ .+..++.+.
T Consensus 2 l~~~~~~qL~~~f~~l~~--pV~l~~f~~ 28 (94)
T cd02974 2 LDANLKQQLKAYLERLEN--PVELVASLD 28 (94)
T ss_pred CCHHHHHHHHHHHHhCCC--CEEEEEEeC
Confidence 456666666666665532 255444444
No 257
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=25.49 E-value=2.4e+02 Score=20.31 Aligned_cols=37 Identities=19% Similarity=0.193 Sum_probs=27.1
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
.+-|+.|- +.+|....+++.+.+.++... .. .++++.
T Consensus 148 llllDEPt--~~LD~~~~~~l~~~l~~~~~~-~~-tiii~s 184 (207)
T PRK13539 148 IWILDEPT--AALDAAAVALFAELIRAHLAQ-GG-IVIAAT 184 (207)
T ss_pred EEEEeCCc--ccCCHHHHHHHHHHHHHHHHC-CC-EEEEEe
Confidence 46677775 999999999999999987543 33 444443
No 258
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=25.44 E-value=2.1e+02 Score=21.98 Aligned_cols=39 Identities=13% Similarity=0.316 Sum_probs=28.9
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
.+.|+.|- +.+|.....++.+.+.++..+...-+|++|-
T Consensus 165 llllDEPt--~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtH 203 (287)
T PRK13637 165 ILILDEPT--AGLDPKGRDEILNKIKELHKEYNMTIILVSH 203 (287)
T ss_pred EEEEECCc--cCCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 56777874 9999999999999999986543433444454
No 259
>TIGR03790 conserved hypothetical protein TIGR03790. Despite a broad and sporadic distribution (Cyanobacteria, Verrucomicrobia, Acidobacteria, beta and delta Proteobacteria, and Planctomycetes), this uncharacterized protein family occurs only among the roughly 8 percent of prokarotyic species that carry homologs of the integral membrane protein exosortase (see TIGR02602), a proposed protein-sorting system transpeptidase.
Probab=25.31 E-value=2.3e+02 Score=22.75 Aligned_cols=42 Identities=14% Similarity=0.287 Sum_probs=30.7
Q ss_pred CcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHh------------cCCCeeEEEEE
Q psy9280 50 KNVGLVQLNRPKSLNALCDALVSEVAAAVQQFD------------QDSSVAAIVLT 93 (143)
Q Consensus 50 ~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~------------~d~~vr~vVlt 93 (143)
++|..|.| |.+.+....++.++|.+-++..- ....|++++++
T Consensus 30 ~nii~L~~--p~~e~i~~~ef~~~I~~pl~~~L~~~~~~~~~~~~~~~~I~~~vl~ 83 (316)
T TIGR03790 30 ENLITLDL--PPKETISREEFFQQIKEPLRAYLVENGWWVPSGKRLGARIRVLVLT 83 (316)
T ss_pred HHEEEEEC--CCccccccHHHHHHHHHHHHHHHHhcccccccccccccceEEEEEe
Confidence 35665555 55678999999999888887761 24569999996
No 260
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=25.30 E-value=2.4e+02 Score=20.36 Aligned_cols=37 Identities=24% Similarity=0.503 Sum_probs=27.4
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
.+-|+.|- +.+|....+++.+.+.++.. .. +.||++.
T Consensus 153 llllDEPt--~~LD~~~~~~l~~~l~~~~~-~~-~tiii~s 189 (222)
T cd03224 153 LLLLDEPS--EGLAPKIVEEIFEAIRELRD-EG-VTILLVE 189 (222)
T ss_pred EEEECCCc--ccCCHHHHHHHHHHHHHHHH-CC-CEEEEEe
Confidence 46677774 99999999999999998864 33 3455543
No 261
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=25.07 E-value=2.5e+02 Score=20.42 Aligned_cols=38 Identities=18% Similarity=0.182 Sum_probs=27.1
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
.+-|+.|- +.+|....+.+.+.+.++... ..-++++|.
T Consensus 170 llllDEPt--~~LD~~~~~~l~~~l~~~~~~-g~tii~vsH 207 (224)
T TIGR02324 170 ILLLDEPT--ASLDAANRQVVVELIAEAKAR-GAALIGIFH 207 (224)
T ss_pred EEEEcCCc--ccCCHHHHHHHHHHHHHHHhc-CCEEEEEeC
Confidence 56677774 999999999999999998543 333344443
No 262
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=25.05 E-value=2.4e+02 Score=21.13 Aligned_cols=38 Identities=29% Similarity=0.448 Sum_probs=28.3
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
.+-|+.|- +.+|....+.+.+.+.++.+. ..-++++|-
T Consensus 173 llllDEPt--~~LD~~~~~~l~~~l~~l~~~-g~tiiivsH 210 (257)
T PRK10619 173 VLLFDEPT--SALDPELVGEVLRIMQQLAEE-GKTMVVVTH 210 (257)
T ss_pred EEEEeCCc--ccCCHHHHHHHHHHHHHHHhc-CCEEEEEeC
Confidence 56677774 999999999999999998653 333444454
No 263
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=25.02 E-value=2.2e+02 Score=21.42 Aligned_cols=39 Identities=13% Similarity=0.226 Sum_probs=28.4
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
++-|+.|- +.+|.....++.+.+.++..+...-+|++|-
T Consensus 141 lllLDEPt--~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH 179 (251)
T PRK09544 141 LLVLDEPT--QGVDVNGQVALYDLIDQLRRELDCAVLMVSH 179 (251)
T ss_pred EEEEeCCC--cCCCHHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 56778875 9999999999999999886543333444443
No 264
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=25.01 E-value=2.6e+02 Score=20.18 Aligned_cols=37 Identities=19% Similarity=0.299 Sum_probs=28.5
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcC
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGN 95 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~ 95 (143)
.+-|+.|- +.+|....+++.+.+.++.. + +.||++..
T Consensus 154 llllDEP~--~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH 190 (220)
T cd03263 154 VLLLDEPT--SGLDPASRRAIWDLILEVRK--G-RSIILTTH 190 (220)
T ss_pred EEEECCCC--CCCCHHHHHHHHHHHHHHhc--C-CEEEEEcC
Confidence 56678875 99999999999999999865 3 45666543
No 265
>COG1909 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.94 E-value=1.6e+02 Score=21.33 Aligned_cols=38 Identities=16% Similarity=0.422 Sum_probs=26.3
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCC
Q psy9280 53 GLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNE 96 (143)
Q Consensus 53 ~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g 96 (143)
..|+.++|+ ..++.+.++.+..+ +++++. -.|.+.|..
T Consensus 80 ~~i~V~NpP--GtIt~el~~ai~~a---~~~~k~-~~I~V~GEE 117 (167)
T COG1909 80 RVIKVRNPP--GTITFELIKAIEKA---LEDGKR-VRIFVDGEE 117 (167)
T ss_pred eEEEEeCCC--cEeEHHHHHHHHHH---HhcCCc-EEEEEeChh
Confidence 568888987 78999999998888 444433 234446653
No 266
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=24.90 E-value=2.9e+02 Score=22.49 Aligned_cols=59 Identities=19% Similarity=0.195 Sum_probs=33.4
Q ss_pred cEEEEEecCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCC
Q psy9280 40 NILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGA 103 (143)
Q Consensus 40 ~v~ve~~~~~~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~ 103 (143)
++.+...+ +-..+.++..+..|..-+..=--+. .+.++..+ .+-+||+||.|.-=..|+
T Consensus 235 hl~v~~~~---g~~~~~l~~~~~~~~~rPsvDvlF~-S~A~~~~~-~~~~viLTGmG~DGa~g~ 293 (350)
T COG2201 235 HLEVSRSG---GNYRLKLTDGPPVNGHRPSVDVLFR-SVAELYGS-NALGVILTGMGSDGAAGL 293 (350)
T ss_pred eEEEEecC---CeeEEEeCCCCCCCCcCCChhHHHH-HHHHHcCC-CEEEEEEecCChhHHHHH
Confidence 45555554 5577888766656665543322222 33333333 467899999875444444
No 267
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=24.88 E-value=2.5e+02 Score=20.33 Aligned_cols=38 Identities=29% Similarity=0.343 Sum_probs=27.0
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 53 GLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 53 ~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
-.+-|+.|. +.+|.....++.+.+.++.. ...+|++|.
T Consensus 137 ~illlDEP~--~~LD~~~~~~l~~~l~~~~~--~~tiIiitH 174 (197)
T cd03278 137 PFCVLDEVD--AALDDANVERFARLLKEFSK--ETQFIVITH 174 (197)
T ss_pred CEEEEeCCc--ccCCHHHHHHHHHHHHHhcc--CCEEEEEEC
Confidence 346677775 88999999999999988854 234455554
No 268
>PRK02228 V-type ATP synthase subunit F; Provisional
Probab=24.82 E-value=1.2e+02 Score=19.63 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 72 SEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 72 ~el~~~l~~~~~d~~vr~vVltg 94 (143)
+++.++++++-.++++-+|++|-
T Consensus 30 ee~~~~l~~l~~~~d~gII~Ite 52 (100)
T PRK02228 30 EKLDEAVEEVLEDDDVGILVMHD 52 (100)
T ss_pred HHHHHHHHHHhhCCCEEEEEEeh
Confidence 56788888886688888888884
No 269
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=24.72 E-value=2.2e+02 Score=21.27 Aligned_cols=40 Identities=10% Similarity=0.194 Sum_probs=29.2
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 53 GLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 53 ~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
-++-|+.|- +.+|....+.+.+.+.++..+...-++++|.
T Consensus 160 ~lLlLDEPt--~~LD~~~~~~l~~~L~~~~~~~g~til~~sH 199 (254)
T PRK10418 160 PFIIADEPT--TDLDVVAQARILDLLESIVQKRALGMLLVTH 199 (254)
T ss_pred CEEEEeCCC--cccCHHHHHHHHHHHHHHHHhcCcEEEEEec
Confidence 357788875 8999999999999999886543433444454
No 270
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=24.67 E-value=1.1e+02 Score=22.92 Aligned_cols=25 Identities=12% Similarity=0.263 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhcCCCeeEEEEEcC
Q psy9280 71 VSEVAAAVQQFDQDSSVAAIVLTGN 95 (143)
Q Consensus 71 ~~el~~~l~~~~~d~~vr~vVltg~ 95 (143)
-.++.++|..+.+++...++|+||.
T Consensus 27 ~~~~~~~L~~L~~~~~~~v~ivSGR 51 (244)
T TIGR00685 27 SDRLLTILQKLAARPHNAIWIISGR 51 (244)
T ss_pred CHHHHHHHHHHHhCCCCeEEEEECC
Confidence 3466667777777887778899986
No 271
>PRK14053 methyltransferase; Provisional
Probab=24.57 E-value=1.2e+02 Score=22.52 Aligned_cols=60 Identities=18% Similarity=0.293 Sum_probs=40.5
Q ss_pred CcEEEEEEcCCC---CCCCCCHHHHHH---HHHHHHHHhcCCCeeEEEEEcCC-CCccCCCCcchhh
Q psy9280 50 KNVGLVQLNRPK---SLNALCDALVSE---VAAAVQQFDQDSSVAAIVLTGNE-KAFAAGADIKEML 109 (143)
Q Consensus 50 ~~V~~I~ln~p~---~~Nal~~~~~~e---l~~~l~~~~~d~~vr~vVltg~g-~~FsaG~Dl~~~~ 109 (143)
..|+++||...- ..-++......| +...+..+-.++.+|.+|+.|.. +.+-+|.-|..+.
T Consensus 22 S~VAVvTL~S~~~~~~gaAI~G~c~TENlGIEKvI~NvisNpNIRflilcG~Ev~GHltGqsL~aL~ 88 (194)
T PRK14053 22 SRIAVVTLASSIESFPEAAIWGSSKTENLGVEKIIVNVISNSNIRYVLLCGGESRGHLAGHSLLAIH 88 (194)
T ss_pred CcEEEEEccccccccCCceEEeeccccccCHHHHHHHhhcCCCceEEEEecCccCCccccHHHHHHH
Confidence 478888886531 123333333333 67777788889999999999964 5777777776664
No 272
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=24.53 E-value=74 Score=26.06 Aligned_cols=27 Identities=15% Similarity=0.289 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhcCCCeeEEEEEcCC
Q psy9280 70 LVSEVAAAVQQFDQDSSVAAIVLTGNE 96 (143)
Q Consensus 70 ~~~el~~~l~~~~~d~~vr~vVltg~g 96 (143)
..+++..+|+.+.++|+++=|++||+.
T Consensus 142 ~~~~~~~al~YIa~hPeI~eVllSGGD 168 (369)
T COG1509 142 NKEEWDKALDYIAAHPEIREVLLSGGD 168 (369)
T ss_pred CHHHHHHHHHHHHcCchhheEEecCCC
Confidence 577899999999999999999999863
No 273
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=24.41 E-value=2.7e+02 Score=19.84 Aligned_cols=39 Identities=23% Similarity=0.164 Sum_probs=28.3
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 53 GLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 53 ~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
-.+-|+.|- +.+|....+.+.+.+.++... ..-+|++|-
T Consensus 147 ~llllDEPt--~~LD~~~~~~l~~~l~~~~~~-~~tii~~sH 185 (198)
T TIGR01189 147 PLWILDEPT--TALDKAGVALLAGLLRAHLAR-GGIVLLTTH 185 (198)
T ss_pred CEEEEeCCC--cCCCHHHHHHHHHHHHHHHhC-CCEEEEEEc
Confidence 356778875 999999999999999988543 333444454
No 274
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=24.37 E-value=2.6e+02 Score=20.13 Aligned_cols=37 Identities=14% Similarity=0.220 Sum_probs=27.6
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
.+-|+.|- +.+|....+++.+.+.++..+ .. .+|++.
T Consensus 157 illlDEPt--~~LD~~~~~~l~~~l~~~~~~-~~-tii~~t 193 (218)
T cd03266 157 VLLLDEPT--TGLDVMATRALREFIRQLRAL-GK-CILFST 193 (218)
T ss_pred EEEEcCCC--cCCCHHHHHHHHHHHHHHHHC-CC-EEEEEe
Confidence 56778875 999999999999999998643 33 444443
No 275
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=24.31 E-value=2.2e+02 Score=21.38 Aligned_cols=39 Identities=21% Similarity=0.261 Sum_probs=28.3
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 53 GLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 53 ~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
-++-|+.|- +.+|....+.+.+.+.++..+... .||++.
T Consensus 160 ~lllLDEPt--~~LD~~~~~~l~~~l~~~~~~~~~-tiii~s 198 (258)
T PRK13548 160 RWLLLDEPT--SALDLAHQHHVLRLARQLAHERGL-AVIVVL 198 (258)
T ss_pred CEEEEeCCc--ccCCHHHHHHHHHHHHHHHHhcCC-EEEEEE
Confidence 457778875 999999999999999998633333 444443
No 276
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=24.27 E-value=2.7e+02 Score=19.90 Aligned_cols=38 Identities=13% Similarity=0.264 Sum_probs=27.0
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
.+-|+.|- +.+|....+.+.+.+.++.+ ....+|++|-
T Consensus 110 llLlDEPt--~~LD~~~~~~l~~~l~~~~~-~g~tvIivSH 147 (176)
T cd03238 110 LFILDEPS--TGLHQQDINQLLEVIKGLID-LGNTVILIEH 147 (176)
T ss_pred EEEEeCCc--ccCCHHHHHHHHHHHHHHHh-CCCEEEEEeC
Confidence 45667774 89999999999999998864 3333444454
No 277
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=24.23 E-value=2.7e+02 Score=20.21 Aligned_cols=39 Identities=13% Similarity=0.120 Sum_probs=28.7
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 53 GLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 53 ~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
-.+-|+.|- +.+|....+.+.+.+.++..+ ..-+|++|.
T Consensus 153 ~~lllDEp~--~~lD~~~~~~~~~~l~~~~~~-~~tii~itH 191 (213)
T cd03279 153 EALFIDEGF--GTLDPEALEAVATALELIRTE-NRMVGVISH 191 (213)
T ss_pred CEEEEeCCc--ccCCHHHHHHHHHHHHHHHhC-CCEEEEEEC
Confidence 356677775 899999999999999988643 344555554
No 278
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=24.18 E-value=2.2e+02 Score=20.86 Aligned_cols=38 Identities=16% Similarity=0.169 Sum_probs=27.8
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
++-|+.|- +.+|......+.+.+.++..+.. +.||++.
T Consensus 146 vllLDEPt--~~LD~~~~~~l~~~l~~~~~~~~-~tiii~s 183 (230)
T TIGR02770 146 FLIADEPT--TDLDVVNQARVLKLLRELRQLFG-TGILLIT 183 (230)
T ss_pred EEEEcCCc--cccCHHHHHHHHHHHHHHHHhcC-CEEEEEe
Confidence 56778875 99999999999999998865433 3444443
No 279
>COG4921 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.18 E-value=2.4e+02 Score=19.29 Aligned_cols=47 Identities=26% Similarity=0.343 Sum_probs=33.8
Q ss_pred cEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCC
Q psy9280 51 NVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGAD 104 (143)
Q Consensus 51 ~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~D 104 (143)
+|......+|+ |. .+..+++.++++.+..+.+ .|+.-.|.+|----|
T Consensus 41 ~v~v~~~~~~p--~L--rd~v~ev~~~~n~l~~e~~---~IvaE~Geffn~p~w 87 (131)
T COG4921 41 NVFVVCTREPP--NL--RDLVEEVSRALNGLDKEDE---MIVAEPGEFFNEPEW 87 (131)
T ss_pred eEEEEEecCCC--cH--HHHHHHHHHHHhccCccCc---EEEEcChhhcCCcHh
Confidence 57777777776 44 3678899999999987766 666667777754433
No 280
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=24.16 E-value=2.4e+02 Score=21.20 Aligned_cols=37 Identities=16% Similarity=0.237 Sum_probs=27.1
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEE
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLT 93 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVlt 93 (143)
++-|+.|- +.+|.....++.+.+.++..... +.+|+.
T Consensus 171 vllLDEP~--~~LD~~~~~~l~~~l~~l~~~~~-~tiiiv 207 (261)
T PRK14258 171 VLLMDEPC--FGLDPIASMKVESLIQSLRLRSE-LTMVIV 207 (261)
T ss_pred EEEEeCCC--ccCCHHHHHHHHHHHHHHHHhCC-CEEEEE
Confidence 56677775 99999999999999998754333 344443
No 281
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=24.03 E-value=3.2e+02 Score=20.63 Aligned_cols=59 Identities=19% Similarity=0.259 Sum_probs=34.8
Q ss_pred CCCHHHHHHHHHHHHHHhcC---CCeeEEEEEcCCCCccCCCCcchhhhhhhhhhHHhHHHHHHHHHhcCCCcEEEEEec
Q psy9280 65 ALCDALVSEVAAAVQQFDQD---SSVAAIVLTGNEKAFAAGADIKEMLNQTYAANVKTGLLEHWDNITKAKKPVIAAVNG 141 (143)
Q Consensus 65 al~~~~~~el~~~l~~~~~d---~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~IAav~G 141 (143)
.++..+-+++...|-.++.. +++. |.|-+.|+...+| ...+..|...+.||...+-|
T Consensus 62 ~Idd~~a~~i~aqLl~L~~~~~~~~I~-lyINSpGGsv~aG-------------------laIyd~m~~~~~~V~tv~~G 121 (221)
T PRK14514 62 QIDDYTANTIQAQLLYLDSVDPGKDIS-IYINSPGGSVYAG-------------------LGIYDTMQFISSDVATICTG 121 (221)
T ss_pred EEcHHHHHHHHHHHHHHhccCCCCCEE-EEEECCCcchhhH-------------------HHHHHHHHhcCCCEEEEEEE
Confidence 37788888888877777643 3332 3334444432222 34456666677777777777
Q ss_pred CC
Q psy9280 142 YA 143 (143)
Q Consensus 142 ~a 143 (143)
.|
T Consensus 122 ~A 123 (221)
T PRK14514 122 MA 123 (221)
T ss_pred Ee
Confidence 54
No 282
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=23.97 E-value=2.1e+02 Score=22.68 Aligned_cols=39 Identities=21% Similarity=0.358 Sum_probs=30.2
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
+|.++.|- +.||.....++.+.+.++..+...-+|++|.
T Consensus 182 llilDEPt--s~LD~~~~~~i~~lL~~l~~~~~~til~iTH 220 (331)
T PRK15079 182 LIICDEPV--SALDVSIQAQVVNLLQQLQREMGLSLIFIAH 220 (331)
T ss_pred EEEEeCCC--ccCCHHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 56677774 9999999999999999997654555566665
No 283
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=23.97 E-value=2.4e+02 Score=20.23 Aligned_cols=37 Identities=16% Similarity=0.324 Sum_probs=27.8
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
.+-|+.|- +.+|....+.+.+.+.++..+ . +.|+++.
T Consensus 149 ~lllDEP~--~~LD~~~~~~~~~~l~~~~~~-~-~tii~~s 185 (210)
T cd03269 149 LLILDEPF--SGLDPVNVELLKDVIRELARA-G-KTVILST 185 (210)
T ss_pred EEEEeCCC--cCCCHHHHHHHHHHHHHHHHC-C-CEEEEEC
Confidence 56677875 999999999999999988643 3 3555554
No 284
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=23.94 E-value=2.3e+02 Score=21.41 Aligned_cols=39 Identities=18% Similarity=0.227 Sum_probs=27.9
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
++-|+.|- +.+|....+.+.+.+.++......-+|++|-
T Consensus 171 illLDEPt--~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH 209 (265)
T TIGR02769 171 LIVLDEAV--SNLDMVLQAVILELLRKLQQAFGTAYLFITH 209 (265)
T ss_pred EEEEeCCc--ccCCHHHHHHHHHHHHHHHHhcCcEEEEEeC
Confidence 46677774 9999999999999999986543333344443
No 285
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=23.93 E-value=2.2e+02 Score=22.83 Aligned_cols=39 Identities=10% Similarity=0.232 Sum_probs=30.2
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
.+-++.|- +++|.....++.+.+.++..+...-+|++|-
T Consensus 161 iLLlDEPt--s~LD~~t~~~i~~lL~~l~~~~g~tiiliTH 199 (343)
T TIGR02314 161 VLLCDEAT--SALDPATTQSILELLKEINRRLGLTILLITH 199 (343)
T ss_pred EEEEeCCc--ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 45666764 9999999999999999997655555666665
No 286
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=23.85 E-value=2.6e+02 Score=20.48 Aligned_cols=37 Identities=14% Similarity=0.200 Sum_probs=27.6
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
.+-|+.|- +.+|....+++.+.+.++... . +.||+..
T Consensus 165 llllDEPt--~~LD~~~~~~l~~~l~~~~~~-~-~tvi~vs 201 (243)
T TIGR01978 165 LAILDEID--SGLDIDALKIVAEGINRLREP-D-RSFLIIT 201 (243)
T ss_pred EEEecCCc--ccCCHHHHHHHHHHHHHHHHC-C-cEEEEEE
Confidence 56777774 999999999999999998643 3 3444443
No 287
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=23.84 E-value=2.3e+02 Score=21.68 Aligned_cols=39 Identities=21% Similarity=0.319 Sum_probs=28.3
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
.+.|+.|- +.+|.....++.+.+.++..+...-+|++|-
T Consensus 162 lLilDEPt--~gLD~~~~~~l~~~l~~l~~~~g~tillvsH 200 (283)
T PRK13636 162 VLVLDEPT--AGLDPMGVSEIMKLLVEMQKELGLTIIIATH 200 (283)
T ss_pred EEEEeCCc--cCCCHHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 56778875 9999999999999999886543333444443
No 288
>PTZ00346 histone deacetylase; Provisional
Probab=23.82 E-value=3.6e+02 Score=22.65 Aligned_cols=71 Identities=18% Similarity=0.056 Sum_probs=36.4
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchhhhhhhhhhHHhHHHHHHHHHhcCCCcEEEEEec
Q psy9280 64 NALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQTYAANVKTGLLEHWDNITKAKKPVIAAVNG 141 (143)
Q Consensus 64 Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~IAav~G 141 (143)
++=|.+++..+.+.+..+-..-.-.+||+. +|.|...-.....-..-.+.+..+.+.+..+..|++....|
T Consensus 246 G~~D~~Yl~~f~~ii~p~l~~F~PdlIvvs-------aG~Da~~~DpLg~l~LT~~g~~~~~~~l~~~~~plv~vleG 316 (429)
T PTZ00346 246 GITDFYYLGLFEHALHSIVRRYSPDAIVLQ-------CGADSLAGDRLGLLNLSSFGHGQCVQAVRDLGIPMLALGGG 316 (429)
T ss_pred CcCHHHHHHHHHHHHHHHHHhcCCCEEEEE-------CCccCCCCCCCCCceeCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 445667777787776654332222356654 34454332211110000123344556666778898887766
No 289
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=23.75 E-value=2.4e+02 Score=21.37 Aligned_cols=39 Identities=10% Similarity=0.201 Sum_probs=28.2
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
++-|+.|- +.+|....+++.+.+.++..+....++++|-
T Consensus 181 illLDEPt--~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH 219 (269)
T cd03294 181 ILLMDEAF--SALDPLIRREMQDELLRLQAELQKTIVFITH 219 (269)
T ss_pred EEEEcCCC--ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 56677775 9999999999999999986543333344443
No 290
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=23.73 E-value=2.4e+02 Score=21.62 Aligned_cols=39 Identities=13% Similarity=0.273 Sum_probs=28.8
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
++-|+.|- +.+|......+.+.+.++..+....+|++|-
T Consensus 164 llllDEPt--~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH 202 (282)
T PRK13640 164 IIILDEST--SMLDPAGKEQILKLIRKLKKKNNLTVISITH 202 (282)
T ss_pred EEEEECCc--ccCCHHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 56677775 9999999999999999986543444444443
No 291
>PTZ00410 NAD-dependent SIR2; Provisional
Probab=23.66 E-value=1.3e+02 Score=24.52 Aligned_cols=38 Identities=16% Similarity=0.294 Sum_probs=23.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCC
Q psy9280 62 SLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAG 102 (143)
Q Consensus 62 ~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG 102 (143)
....++...++++.+.+.. ...-++||+||+|=.=.+|
T Consensus 8 ~~~~~~~~~l~~la~~I~~---~~ak~IVvlTGAGISteSG 45 (349)
T PTZ00410 8 QEHVVGEPTFEGLARYIER---NNVTKILVMVGAGISVAAG 45 (349)
T ss_pred hhhccchHHHHHHHHHHHh---cCCCCEEEEECcccccccC
Confidence 3456666777777666553 1122689999987444443
No 292
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=23.61 E-value=2.8e+02 Score=19.86 Aligned_cols=37 Identities=24% Similarity=0.317 Sum_probs=27.1
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
.+-|+.|- +.+|....+++.+.+.++... . +.+|++.
T Consensus 150 llllDEPt--~~LD~~~~~~l~~~l~~~~~~-~-~tiii~s 186 (204)
T PRK13538 150 LWILDEPF--TAIDKQGVARLEALLAQHAEQ-G-GMVILTT 186 (204)
T ss_pred EEEEeCCC--ccCCHHHHHHHHHHHHHHHHC-C-CEEEEEe
Confidence 46677774 999999999999999988643 3 3444443
No 293
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=23.55 E-value=2.2e+02 Score=22.56 Aligned_cols=39 Identities=18% Similarity=0.338 Sum_probs=30.2
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
+|.++.|- ++||.....++.+.+.++..+...-+|++|-
T Consensus 182 llilDEPt--s~LD~~~~~~i~~lL~~l~~~~g~til~iTH 220 (330)
T PRK09473 182 LLIADEPT--TALDVTVQAQIMTLLNELKREFNTAIIMITH 220 (330)
T ss_pred EEEEeCCC--ccCCHHHHHHHHHHHHHHHHHcCCEEEEEEC
Confidence 46677774 9999999999999999997655555555664
No 294
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=23.50 E-value=2.8e+02 Score=20.11 Aligned_cols=38 Identities=24% Similarity=0.141 Sum_probs=27.5
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
++-|+.|- +.+|.+..+.+.+.+.++..+ ..-+|++|.
T Consensus 158 llllDEPt--~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH 195 (214)
T PRK13543 158 LWLLDEPY--ANLDLEGITLVNRMISAHLRG-GGAALVTTH 195 (214)
T ss_pred EEEEeCCc--ccCCHHHHHHHHHHHHHHHhC-CCEEEEEec
Confidence 56677775 999999999999999988654 333344444
No 295
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=23.46 E-value=2.7e+02 Score=20.32 Aligned_cols=37 Identities=19% Similarity=0.375 Sum_probs=27.5
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
.+-|+.|- +.+|.....++.+.+.++.. .. +.||+..
T Consensus 164 llllDEPt--~~LD~~~~~~l~~~l~~~~~-~~-~tii~vs 200 (236)
T cd03219 164 LLLLDEPA--AGLNPEETEELAELIRELRE-RG-ITVLLVE 200 (236)
T ss_pred EEEEcCCc--ccCCHHHHHHHHHHHHHHHH-CC-CEEEEEe
Confidence 56677774 99999999999999998865 33 3455543
No 296
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=23.32 E-value=3.3e+02 Score=20.56 Aligned_cols=32 Identities=16% Similarity=0.325 Sum_probs=22.6
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcC
Q psy9280 63 LNALCDALVSEVAAAVQQFDQDSSVAAIVLTGN 95 (143)
Q Consensus 63 ~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~ 95 (143)
.|....+-.+.+.++++.+...+ +..||++|.
T Consensus 18 ~~~~~~~~~~~l~~~i~~i~~~~-~d~vv~~GD 49 (267)
T cd07396 18 RPRYYRNSLEKLEEAVEEWNRES-LDFVVQLGD 49 (267)
T ss_pred ccchHHHhHHHHHHHHHHHHcCC-CCEEEECCC
Confidence 35555666777888888886543 668888884
No 297
>PF08747 DUF1788: Domain of unknown function (DUF1788); InterPro: IPR014858 This entry represents a putative uncharacterised protein of length around 200 amino acids.
Probab=23.25 E-value=1.2e+02 Score=20.69 Aligned_cols=16 Identities=31% Similarity=0.474 Sum_probs=11.4
Q ss_pred CCCeeEEEEEcCCCCc
Q psy9280 84 DSSVAAIVLTGNEKAF 99 (143)
Q Consensus 84 d~~vr~vVltg~g~~F 99 (143)
+++-.+|.+||.|..|
T Consensus 59 ~~~~~vv~ltGvG~l~ 74 (126)
T PF08747_consen 59 DDDRDVVFLTGVGSLF 74 (126)
T ss_pred CCCCcEEEEeCcchhc
Confidence 3445688889988766
No 298
>cd04239 AAK_UMPK-like AAK_UMPK-like: UMP kinase (UMPK)-like, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis. Regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinases of E. coli (Ec) and Pyrococcus furiosus (Pf) are known to function as homohexamers, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Als
Probab=23.11 E-value=1.6e+02 Score=21.83 Aligned_cols=32 Identities=13% Similarity=0.283 Sum_probs=24.6
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCC
Q psy9280 65 ALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEK 97 (143)
Q Consensus 65 al~~~~~~el~~~l~~~~~d~~vr~vVltg~g~ 97 (143)
.++.+.++.+.+.+.++... ..++||++|.|.
T Consensus 17 ~~~~~~i~~~a~~i~~~~~~-g~~vvvV~ggG~ 48 (229)
T cd04239 17 GIDPEVLKEIAREIKEVVDL-GVEVAIVVGGGN 48 (229)
T ss_pred CCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCh
Confidence 78899999999999887533 347888887654
No 299
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=23.07 E-value=3.5e+02 Score=21.45 Aligned_cols=41 Identities=12% Similarity=0.284 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchhhhhh
Q psy9280 68 DALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQT 112 (143)
Q Consensus 68 ~~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~ 112 (143)
.+|-+.+.+.|++. .|+ .|||||....-=...|+.++....
T Consensus 140 ~eqp~~i~~Ll~~~--~PD--IlViTGHD~~~K~~~d~~dl~~Yr 180 (287)
T PF05582_consen 140 KEQPEKIYRLLEEY--RPD--ILVITGHDGYLKNKKDYSDLNNYR 180 (287)
T ss_pred HHhhHHHHHHHHHc--CCC--EEEEeCchhhhcCCCChhhhhhhh
Confidence 35556666666665 355 599999754434445776665443
No 300
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=22.96 E-value=2.8e+02 Score=20.30 Aligned_cols=38 Identities=5% Similarity=0.142 Sum_probs=27.8
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 53 GLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 53 ~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
-.+.|+.|- +.+|....+++.+.+.++... . +.||++.
T Consensus 162 ~llllDEP~--~gLD~~~~~~~~~~l~~~~~~-~-~tiii~s 199 (224)
T cd03220 162 DILLIDEVL--AVGDAAFQEKCQRRLRELLKQ-G-KTVILVS 199 (224)
T ss_pred CEEEEeCCc--ccCCHHHHHHHHHHHHHHHhC-C-CEEEEEe
Confidence 356777875 899999999999999888654 3 3455544
No 301
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=22.91 E-value=2.9e+02 Score=20.04 Aligned_cols=40 Identities=20% Similarity=0.408 Sum_probs=28.0
Q ss_pred EEEEEcCCCCCCCCCHHHHH-HHHHHHHHHhcCCCeeEEEEEc
Q psy9280 53 GLVQLNRPKSLNALCDALVS-EVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 53 ~~I~ln~p~~~Nal~~~~~~-el~~~l~~~~~d~~vr~vVltg 94 (143)
-.+-|+.|. +.+|....+ .+.+.+.++..+...-++++|-
T Consensus 141 ~illlDEP~--~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH 181 (204)
T cd03240 141 GILALDEPT--TNLDEENIEESLAEIIEERKSQKNFQLIVITH 181 (204)
T ss_pred CEEEEcCCc--cccCHHHHHHHHHHHHHHHHhccCCEEEEEEe
Confidence 456777775 889999988 9999998886543333444454
No 302
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=22.88 E-value=3.8e+02 Score=21.07 Aligned_cols=83 Identities=8% Similarity=0.102 Sum_probs=49.6
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchhhhhhhhhhHHhHHHHHHHHHhcC
Q psy9280 52 VGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQTYAANVKTGLLEHWDNITKA 131 (143)
Q Consensus 52 V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~ 131 (143)
|+++-.+..-..-+++...-+.+.++++.+.... +=+|.+...|++ -+.+ ....-.........+.++...
T Consensus 122 V~v~a~D~~f~gGSmg~~~geKi~r~~e~A~~~~-lPlV~l~dSgGa-----RmqE---g~~sL~~~ak~~~~~~~~~~~ 192 (285)
T TIGR00515 122 IVVAVFDFAFMGGSMGSVVGEKFVRAIEKALEDN-CPLIIFSASGGA-----RMQE---ALLSLMQMAKTSAALAKMSER 192 (285)
T ss_pred EEEEEEeccccCCCccHHHHHHHHHHHHHHHHcC-CCEEEEEcCCCc-----cccc---chhHHHhHHHHHHHHHHHHcC
Confidence 5555554433567899999999999999887544 456666654433 1211 000000001222334566777
Q ss_pred CCcEEEEEecCC
Q psy9280 132 KKPVIAAVNGYA 143 (143)
Q Consensus 132 ~kP~IAav~G~a 143 (143)
..|.|+++-|+|
T Consensus 193 ~vP~IsVv~gpt 204 (285)
T TIGR00515 193 GLPYISVLTDPT 204 (285)
T ss_pred CCCEEEEEeCCc
Confidence 899999999875
No 303
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=22.71 E-value=2.8e+02 Score=20.49 Aligned_cols=38 Identities=26% Similarity=0.478 Sum_probs=27.7
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
++-|+.|- +.+|....+++.+.+.++..+ ..-+|++|-
T Consensus 165 lllLDEPt--~~LD~~~~~~l~~~l~~~~~~-~~tvi~~tH 202 (250)
T PRK11264 165 VILFDEPT--SALDPELVGEVLNTIRQLAQE-KRTMVIVTH 202 (250)
T ss_pred EEEEeCCC--ccCCHHHHHHHHHHHHHHHhc-CCEEEEEeC
Confidence 56677774 999999999999999998654 333344443
No 304
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=22.66 E-value=2.8e+02 Score=20.33 Aligned_cols=37 Identities=19% Similarity=0.427 Sum_probs=27.8
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
++-|+.|- +.+|....+++.+.+.++.+. . +.||++.
T Consensus 158 illlDEPt--~~LD~~~~~~l~~~l~~~~~~-~-~tiii~s 194 (237)
T PRK11614 158 LLLLDEPS--LGLAPIIIQQIFDTIEQLREQ-G-MTIFLVE 194 (237)
T ss_pred EEEEcCcc--ccCCHHHHHHHHHHHHHHHHC-C-CEEEEEe
Confidence 46677775 999999999999999998643 3 3455544
No 305
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=22.54 E-value=1.1e+02 Score=25.42 Aligned_cols=27 Identities=7% Similarity=0.364 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhcCCCeeEEEEEcCCC
Q psy9280 71 VSEVAAAVQQFDQDSSVAAIVLTGNEK 97 (143)
Q Consensus 71 ~~el~~~l~~~~~d~~vr~vVltg~g~ 97 (143)
.+++.++++.+..+++++-|+|||+..
T Consensus 140 ~eei~~~i~yI~~~p~I~~VlLSGGDP 166 (417)
T TIGR03820 140 KEQILEGIEYIRNTPQIRDVLLSGGDP 166 (417)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCcc
Confidence 578888888888888999999998644
No 306
>PF04208 MtrA: Tetrahydromethanopterin S-methyltransferase, subunit A ; InterPro: IPR013340 This domain is mostly found in N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit A (MtrA) in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. 5-methyl-5,6,7,8-tetrahydromethanopterin + 2-mercaptoethanesulphonate = 5,6,7,8-tetrahydromethanopterin + 2-(methylthio)ethanesulphonate. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase. In some organisms this domain is found at the N-terminal region of what appears to be a fusion of the MtrA and MtrF proteins [, ]. The function of these proteins is unknown, though it is likely that they are involved in C1 metabolism. ; GO: 0008168 methyltransferase activity, 0030269 tetrahydromethanopterin S-methyltransferase activity
Probab=22.53 E-value=1.1e+02 Score=22.31 Aligned_cols=61 Identities=13% Similarity=0.232 Sum_probs=38.5
Q ss_pred CCcEEEEEEcCCCC------CCCCCHHHHH---HHHHHHHHHhcCCCeeEEEEEcCC-CCccCCCCcchhh
Q psy9280 49 NKNVGLVQLNRPKS------LNALCDALVS---EVAAAVQQFDQDSSVAAIVLTGNE-KAFAAGADIKEML 109 (143)
Q Consensus 49 ~~~V~~I~ln~p~~------~Nal~~~~~~---el~~~l~~~~~d~~vr~vVltg~g-~~FsaG~Dl~~~~ 109 (143)
+..|+++||..... .-++...... .+...+..+-.++.+|.+|++|.. +..-+|.-|..+.
T Consensus 21 ~S~VAV~TL~S~~~~~~l~~gaAI~G~~~TENlGIEKvI~NvisNpnIRflilcG~Ev~GH~~Gqsl~aLh 91 (176)
T PF04208_consen 21 ESPVAVCTLGSHLLQAPLDAGAAIAGPCKTENLGIEKVIANVISNPNIRFLILCGSEVKGHLTGQSLLALH 91 (176)
T ss_pred CCCEEEEECccccchhhhhcCceeeecccccccCHHHHHHHHhcCCCceEEEEecCccCCCcchHHHHHHH
Confidence 34788888865321 1122222222 266777788889999999999963 5666666665553
No 307
>PRK00964 tetrahydromethanopterin S-methyltransferase subunit A; Provisional
Probab=22.43 E-value=1.2e+02 Score=23.08 Aligned_cols=61 Identities=16% Similarity=0.310 Sum_probs=41.1
Q ss_pred CCcEEEEEEcCCC-------CCCCCCHHHHHH---HHHHHHHHhcCCCeeEEEEEcCC-CCccCCCCcchhh
Q psy9280 49 NKNVGLVQLNRPK-------SLNALCDALVSE---VAAAVQQFDQDSSVAAIVLTGNE-KAFAAGADIKEML 109 (143)
Q Consensus 49 ~~~V~~I~ln~p~-------~~Nal~~~~~~e---l~~~l~~~~~d~~vr~vVltg~g-~~FsaG~Dl~~~~ 109 (143)
+..|+++||.... ..-++...+..| +...+..+-.++.+|.+|++|.. +.+-+|--|..+.
T Consensus 24 ~SpVAV~Tl~S~~~~~~~~~agaAi~G~~~TENlGIEKvI~NvisNpNIRflilcG~Ev~GH~tGqsl~aL~ 95 (225)
T PRK00964 24 ESPVAVVTLGSHLLDQPIIDAGAAISGPCHTENLGIEKVIANVISNPNIRFLILCGSEVQGHITGQSLKALH 95 (225)
T ss_pred CCceEEEEccccccccchhhcCceeecccccccccHHHHHHHHhcCCCceEEEEecCccCCccccHHHHHHH
Confidence 4579999997642 122333333333 67777788889999999999964 6666776666554
No 308
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=22.35 E-value=2.9e+02 Score=19.79 Aligned_cols=38 Identities=18% Similarity=0.315 Sum_probs=27.1
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
.+-|+.|- +.+|.....++.+.+.++.+. ..-++++|-
T Consensus 158 lllLDEPt--~~LD~~~~~~l~~~l~~~~~~-~~tii~~tH 195 (214)
T TIGR02673 158 LLLADEPT--GNLDPDLSERILDLLKRLNKR-GTTVIVATH 195 (214)
T ss_pred EEEEeCCc--ccCCHHHHHHHHHHHHHHHHc-CCEEEEEeC
Confidence 46677774 999999999999999988643 333444443
No 309
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=22.30 E-value=2.7e+02 Score=21.29 Aligned_cols=40 Identities=15% Similarity=0.228 Sum_probs=29.9
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcC
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGN 95 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~ 95 (143)
.+-|+.|- +.+|.....++.+.+.++..+...-+|++|..
T Consensus 161 lLlLDEPt--~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~ 200 (279)
T PRK13650 161 IIILDEAT--SMLDPEGRLELIKTIKGIRDDYQMTVISITHD 200 (279)
T ss_pred EEEEECCc--ccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 56777875 99999999999999999865444445555543
No 310
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=22.17 E-value=2.9e+02 Score=20.59 Aligned_cols=38 Identities=24% Similarity=0.336 Sum_probs=28.1
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 53 GLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 53 ~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
-.+-|+.|- +.+|.....++.+.+.++... . +.||++.
T Consensus 153 ~llllDEPt--~~LD~~~~~~l~~~L~~~~~~-~-~tvi~~s 190 (248)
T PRK03695 153 QLLLLDEPM--NSLDVAQQAALDRLLSELCQQ-G-IAVVMSS 190 (248)
T ss_pred CEEEEcCCc--ccCCHHHHHHHHHHHHHHHhC-C-CEEEEEe
Confidence 356777775 999999999999999998643 3 3444443
No 311
>PRK05665 amidotransferase; Provisional
Probab=22.07 E-value=1.5e+02 Score=22.51 Aligned_cols=44 Identities=11% Similarity=0.022 Sum_probs=25.7
Q ss_pred eeEEEEEcCCCCccCCCCcchhhhhhhhhhHHhHHHHHHHHHhcCCCcEEEEEecC
Q psy9280 87 VAAIVLTGNEKAFAAGADIKEMLNQTYAANVKTGLLEHWDNITKAKKPVIAAVNGY 142 (143)
Q Consensus 87 vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~IAav~G~ 142 (143)
+.++||||.+.. .. +...|...+.+.++.+....+|++...-|+
T Consensus 58 ~dgiiitGs~~~------v~------~~~pwi~~l~~~i~~~~~~~~PilGIC~Gh 101 (240)
T PRK05665 58 FDAYLVTGSKAD------SF------GTDPWIQTLKTYLLKLYERGDKLLGVCFGH 101 (240)
T ss_pred CCEEEECCCCCC------cc------ccchHHHHHHHHHHHHHhcCCCEEEEeHHH
Confidence 667888876421 11 112233455556666666788998877664
No 312
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=21.86 E-value=2.6e+02 Score=22.30 Aligned_cols=39 Identities=15% Similarity=0.296 Sum_probs=29.1
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
.+-|+.|- +.+|....+++.+.+.++..+...-+|++|-
T Consensus 152 lllLDEPt--s~LD~~~~~~l~~~L~~l~~~~g~tiiivtH 190 (354)
T TIGR02142 152 LLLMDEPL--AALDDPRKYEILPYLERLHAEFGIPILYVSH 190 (354)
T ss_pred EEEEcCCC--cCCCHHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 56677774 9999999999999999987653444444454
No 313
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=21.84 E-value=3.8e+02 Score=20.69 Aligned_cols=72 Identities=11% Similarity=0.149 Sum_probs=45.1
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchhhhhhhhhhHHhHHHHHHHHHhcCCCcEEEEEecC
Q psy9280 63 LNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQTYAANVKTGLLEHWDNITKAKKPVIAAVNGY 142 (143)
Q Consensus 63 ~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~IAav~G~ 142 (143)
...++.+-.+...+.++.++... +=+|-|.-.++++. |.+- +.....+.+.+.+..+....+|+|+.|-|.
T Consensus 76 ~G~~~~~g~rKa~R~~~lA~~~~-lPvV~lvDtpGa~~-g~~a-------E~~G~~~~ia~~~~~~s~~~VP~IsVI~G~ 146 (256)
T PRK12319 76 FGQPHPEGYRKALRLMKQAEKFG-RPVVTFINTAGAYP-GVGA-------EERGQGEAIARNLMEMSDLKVPIIAIIIGE 146 (256)
T ss_pred CCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEECCCcCC-CHhH-------HhccHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 45678888888888888886543 33444433333332 2221 111112456677788899999999999886
Q ss_pred C
Q psy9280 143 A 143 (143)
Q Consensus 143 a 143 (143)
|
T Consensus 147 ~ 147 (256)
T PRK12319 147 G 147 (256)
T ss_pred c
Confidence 5
No 314
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=21.84 E-value=2.9e+02 Score=20.01 Aligned_cols=37 Identities=22% Similarity=0.454 Sum_probs=28.0
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
.+-|+.|- +.+|....+++.+.+.++... . +.+|++.
T Consensus 145 llllDEP~--~~LD~~~~~~l~~~L~~~~~~-~-~tiii~s 181 (223)
T TIGR03740 145 LLILDEPT--NGLDPIGIQELRELIRSFPEQ-G-ITVILSS 181 (223)
T ss_pred EEEECCCc--cCCCHHHHHHHHHHHHHHHHC-C-CEEEEEc
Confidence 56777875 999999999999999998643 3 3455544
No 315
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=21.84 E-value=3.1e+02 Score=20.23 Aligned_cols=37 Identities=16% Similarity=0.188 Sum_probs=27.3
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
++-|+.| .+.+|....+.+.+.+.++... . +.||++.
T Consensus 166 illLDEP--t~~LD~~~~~~l~~~l~~l~~~-~-~tiii~s 202 (248)
T PRK09580 166 LCILDES--DSGLDIDALKIVADGVNSLRDG-K-RSFIIVT 202 (248)
T ss_pred EEEEeCC--CccCCHHHHHHHHHHHHHHHhC-C-CEEEEEe
Confidence 4667777 4999999999999999988643 3 3455543
No 316
>TIGR03328 salvage_mtnB methylthioribulose-1-phosphate dehydratase. Members of this family are the methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway. This pathway allows methylthioadenosine, left over from polyamine biosynthesis, to be recycled to methionine.
Probab=21.83 E-value=1.3e+02 Score=21.88 Aligned_cols=40 Identities=23% Similarity=0.360 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchhhhh
Q psy9280 68 DALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQ 111 (143)
Q Consensus 68 ~~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~ 111 (143)
.++.+.+.++++. .++.+++++.+.| .|+.|-|+.+-...
T Consensus 137 ~ela~~~~~~l~~---~~~~~avll~nHG-v~~~G~~~~~A~~~ 176 (193)
T TIGR03328 137 ARLADSVAPYLEA---YPDVPGVLIRGHG-LYAWGRDWEEAKRH 176 (193)
T ss_pred HHHHHHHHHHHhc---CCCCCEEEEcCCc-ceEEcCCHHHHHHH
Confidence 4555555555542 2455788887665 68889999875443
No 317
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=21.81 E-value=3.4e+02 Score=21.45 Aligned_cols=40 Identities=10% Similarity=0.212 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchhhhhh
Q psy9280 69 ALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQT 112 (143)
Q Consensus 69 ~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~ 112 (143)
+|-+.+.+.|++. .|+ .|||||....--...|..++....
T Consensus 140 eqp~~i~~Ll~~~--~PD--IlViTGHD~~~K~~~d~~dl~~Yr 179 (283)
T TIGR02855 140 EMPEKVLDLIEEV--RPD--ILVITGHDAYSKNKGNYMDLNAYR 179 (283)
T ss_pred hchHHHHHHHHHh--CCC--EEEEeCchhhhcCCCChhhhhhhh
Confidence 5555666666665 355 599999765555556777665543
No 318
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=21.78 E-value=2.7e+02 Score=20.11 Aligned_cols=36 Identities=14% Similarity=0.272 Sum_probs=27.8
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
.+-|+.|- +.+|.....++.+.+.++..+ +.||++.
T Consensus 161 llllDEPt--~~LD~~~~~~l~~~l~~~~~~---~tii~~s 196 (220)
T cd03245 161 ILLLDEPT--SAMDMNSEERLKERLRQLLGD---KTLIIIT 196 (220)
T ss_pred EEEEeCcc--ccCCHHHHHHHHHHHHHhcCC---CEEEEEe
Confidence 56677774 999999999999999998643 4565554
No 319
>cd04254 AAK_UMPK-PyrH-Ec UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD be
Probab=21.76 E-value=2.2e+02 Score=21.22 Aligned_cols=35 Identities=11% Similarity=0.265 Sum_probs=26.3
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCc
Q psy9280 64 NALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAF 99 (143)
Q Consensus 64 Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~F 99 (143)
..++.+.+..+.+.+.++... ..+.||+.|+|..+
T Consensus 18 ~~~~~~~i~~~a~~i~~~~~~-~~~~viVhGgG~~~ 52 (231)
T cd04254 18 FGIDPEVLNRIAREIKEVVDL-GVEVAIVVGGGNIF 52 (231)
T ss_pred CCCCHHHHHHHHHHHHHHHHC-CCcEEEEECCCccc
Confidence 568899999999999877543 34678888877543
No 320
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=21.74 E-value=2.3e+02 Score=21.43 Aligned_cols=39 Identities=28% Similarity=0.416 Sum_probs=32.4
Q ss_pred EEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcC
Q psy9280 55 VQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGN 95 (143)
Q Consensus 55 I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~ 95 (143)
+-|+.| .-++|+.+..|+.+.+..+..++..-++.+|-.
T Consensus 151 lLLDEP--FsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~ 189 (231)
T COG3840 151 LLLDEP--FSALDPALRAEMLALVSQLCDERKMTLLMVTHH 189 (231)
T ss_pred EEecCc--hhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCC
Confidence 445555 689999999999999999998888778888764
No 321
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=21.73 E-value=1.5e+02 Score=23.11 Aligned_cols=32 Identities=22% Similarity=0.248 Sum_probs=19.7
Q ss_pred CCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCC
Q psy9280 66 LCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAG 102 (143)
Q Consensus 66 l~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG 102 (143)
.+..-+++|.+.+.. .+ ++||+||+|=.=.+|
T Consensus 4 ~~~~~l~~l~~~i~~---~~--~ivvlTGAGiS~~SG 35 (285)
T PRK05333 4 ADPAALDALQDFVER---HP--RLFVLTGAGISTDSG 35 (285)
T ss_pred ccHHHHHHHHHHHHh---CC--cEEEEeCCccccccC
Confidence 455566666666553 22 689999987444433
No 322
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=21.67 E-value=3.2e+02 Score=20.70 Aligned_cols=39 Identities=15% Similarity=0.294 Sum_probs=31.5
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
++.|+-|- ..+|+...+++.+.+.++..+....+|++|.
T Consensus 159 iliLDEPt--a~LD~~~~~~l~~~l~~L~~~~~~tii~~tH 197 (235)
T COG1122 159 ILLLDEPT--AGLDPKGRRELLELLKKLKEEGGKTIIIVTH 197 (235)
T ss_pred EEEEcCCC--CCCCHHHHHHHHHHHHHHHhcCCCeEEEEeC
Confidence 46677764 8899999999999999998776556677675
No 323
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=21.67 E-value=2.7e+02 Score=18.91 Aligned_cols=37 Identities=14% Similarity=0.341 Sum_probs=26.2
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
.+-|+.|. +.+|.....++.+.+.++... . +.++++.
T Consensus 101 i~ilDEp~--~~lD~~~~~~l~~~l~~~~~~-~-~tii~~s 137 (157)
T cd00267 101 LLLLDEPT--SGLDPASRERLLELLRELAEE-G-RTVIIVT 137 (157)
T ss_pred EEEEeCCC--cCCCHHHHHHHHHHHHHHHHC-C-CEEEEEe
Confidence 45667775 889999999999999887654 3 3444443
No 324
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=21.64 E-value=2.8e+02 Score=20.91 Aligned_cols=40 Identities=13% Similarity=0.248 Sum_probs=28.4
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcC
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGN 95 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~ 95 (143)
++-|+.|- +.+|....+.+.+.+.++..+...-++++|-.
T Consensus 163 lllLDEPt--~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~ 202 (269)
T PRK13648 163 VIILDEAT--SMLDPDARQNLLDLVRKVKSEHNITIISITHD 202 (269)
T ss_pred EEEEeCCc--ccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 46677775 99999999999999998865433334444443
No 325
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=21.55 E-value=3.5e+02 Score=20.62 Aligned_cols=37 Identities=19% Similarity=0.353 Sum_probs=21.3
Q ss_pred CCCCCCCCCHHHHHH-HHHHHHHHhcCCCeeEEEEEcC
Q psy9280 59 RPKSLNALCDALVSE-VAAAVQQFDQDSSVAAIVLTGN 95 (143)
Q Consensus 59 ~p~~~Nal~~~~~~e-l~~~l~~~~~d~~vr~vVltg~ 95 (143)
||.-.|.++.-+.+- |.+.+..+...-...+||++|.
T Consensus 17 ~~~~~~~~~~~~~D~ylr~~~~~~~~~l~PD~vv~lGD 54 (257)
T cd08163 17 RPWILNTLTEHFVDNYLRRNWRYMQKQLKPDSTIFLGD 54 (257)
T ss_pred CchhhhhhhHHhhHHHHHHHHHHHHHhcCCCEEEEecc
Confidence 455566666544444 4555655554333457888883
No 326
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=21.54 E-value=2.7e+02 Score=22.01 Aligned_cols=39 Identities=18% Similarity=0.346 Sum_probs=30.6
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
+|.++.|- .++|.....++.+.+.++..+...-+|++|-
T Consensus 174 llilDEPt--s~LD~~~~~~il~lL~~l~~~~g~til~iTH 212 (326)
T PRK11022 174 LLIADEPT--TALDVTIQAQIIELLLELQQKENMALVLITH 212 (326)
T ss_pred EEEEeCCC--CCCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 56677774 9999999999999999997655555666665
No 327
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=21.52 E-value=3.1e+02 Score=19.93 Aligned_cols=36 Identities=17% Similarity=0.370 Sum_probs=27.3
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
.+-|+.|- +.+|.....++.+.+.++..+ +.||++.
T Consensus 162 llllDEPt--~~LD~~~~~~l~~~l~~~~~~---~tii~~s 197 (227)
T cd03260 162 VLLLDEPT--SALDPISTAKIEELIAELKKE---YTIVIVT 197 (227)
T ss_pred EEEEeCCC--ccCCHHHHHHHHHHHHHHhhC---cEEEEEe
Confidence 46677774 899999999999999998654 4555544
No 328
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=21.52 E-value=2.5e+02 Score=22.19 Aligned_cols=39 Identities=15% Similarity=0.275 Sum_probs=30.6
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
+|.++.|- ..||.....++.+.|.++..+...-+|++|-
T Consensus 175 lLilDEPt--s~LD~~~~~~i~~lL~~l~~~~g~til~iTH 213 (327)
T PRK11308 175 VVVADEPV--SALDVSVQAQVLNLMMDLQQELGLSYVFISH 213 (327)
T ss_pred EEEEECCC--ccCCHHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 56777774 8999999999999999997655555666664
No 329
>PRK03957 V-type ATP synthase subunit F; Provisional
Probab=21.43 E-value=1.4e+02 Score=19.35 Aligned_cols=23 Identities=17% Similarity=0.436 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 72 SEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 72 ~el~~~l~~~~~d~~vr~vVltg 94 (143)
+++.++++++.+++++-+|++|-
T Consensus 30 ee~~~~l~~l~~~~d~gII~ite 52 (100)
T PRK03957 30 EEAKNAIKELVENDEIGIIIITE 52 (100)
T ss_pred HHHHHHHHHHhhCCCeEEEEEcH
Confidence 68888898888788888888774
No 330
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=21.40 E-value=3e+02 Score=20.86 Aligned_cols=39 Identities=13% Similarity=0.249 Sum_probs=28.2
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcC
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGN 95 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~ 95 (143)
.+-|+.|- +.+|....+.+.+.+.++... ..-+|++|-.
T Consensus 163 llllDEPt--~~LD~~~~~~l~~~L~~~~~~-g~tviivsH~ 201 (272)
T PRK15056 163 VILLDEPF--TGVDVKTEARIISLLRELRDE-GKTMLVSTHN 201 (272)
T ss_pred EEEEeCCC--ccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCC
Confidence 56677774 999999999999999998643 3334444443
No 331
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=21.40 E-value=4.1e+02 Score=20.93 Aligned_cols=83 Identities=11% Similarity=0.126 Sum_probs=48.7
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchhhhhhhhhhHHhHHHHHHHHHhcC
Q psy9280 52 VGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQTYAANVKTGLLEHWDNITKA 131 (143)
Q Consensus 52 V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~ 131 (143)
|+++-.+.--...+++...-+.+.++++.+.... +=+|.+...|+ +.+.+ ....-.........+.++...
T Consensus 123 V~v~a~D~~f~gGS~g~~~~eKi~r~~e~A~~~~-lPlV~l~dsgG-----armqE---gi~sL~~~ak~~~a~~~~~~a 193 (292)
T PRK05654 123 VVLAVMDFSFMGGSMGSVVGEKIVRAVERAIEEK-CPLVIFSASGG-----ARMQE---GLLSLMQMAKTSAALKRLSEA 193 (292)
T ss_pred EEEEEEecccccCCccHHHHHHHHHHHHHHHHcC-CCEEEEEcCCC-----cchhh---hhhHHHhHHHHHHHHHHHHcC
Confidence 4444443333567899999999999999887654 45666654442 22222 000000002223344556677
Q ss_pred CCcEEEEEecCC
Q psy9280 132 KKPVIAAVNGYA 143 (143)
Q Consensus 132 ~kP~IAav~G~a 143 (143)
.+|.|+.+-|+|
T Consensus 194 ~vP~IsVv~gpt 205 (292)
T PRK05654 194 GLPYISVLTDPT 205 (292)
T ss_pred CCCEEEEEeCCC
Confidence 899999998875
No 332
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=21.33 E-value=2.7e+02 Score=21.96 Aligned_cols=39 Identities=18% Similarity=0.372 Sum_probs=29.1
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
.+-|+.| .+.+|.....++.+.+.++..+...-+|++|-
T Consensus 121 lllLDEP--~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTH 159 (325)
T TIGR01187 121 ILLLDEP--LSALDKKLRDQMQLELKTIQEQLGITFVFVTH 159 (325)
T ss_pred EEEEeCC--CccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 4667777 49999999999999999986554444455554
No 333
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.27 E-value=1.4e+02 Score=22.40 Aligned_cols=41 Identities=15% Similarity=0.338 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHhcCCC--eeEEEEEcCCCCccCCCCcchhhhhh
Q psy9280 68 DALVSEVAAAVQQFDQDSS--VAAIVLTGNEKAFAAGADIKEMLNQT 112 (143)
Q Consensus 68 ~~~~~el~~~l~~~~~d~~--vr~vVltg~g~~FsaG~Dl~~~~~~~ 112 (143)
.+.+..+..+++.+...+. .+-|.++| ||.|+-+.......
T Consensus 90 ~~~~~d~~a~~~~L~~~~~~~~~~ig~~G----fC~GG~~a~~~a~~ 132 (236)
T COG0412 90 AEVLADIDAALDYLARQPQVDPKRIGVVG----FCMGGGLALLAATR 132 (236)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCceEEEEE----EcccHHHHHHhhcc
Confidence 6888899999999987763 34577787 99999887765433
No 334
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=21.25 E-value=2.8e+02 Score=22.29 Aligned_cols=40 Identities=18% Similarity=0.365 Sum_probs=30.9
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcC
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGN 95 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~ 95 (143)
.+-|+.| .+.+|....+++.+.+.++..+...-+|++|-.
T Consensus 157 llLLDEP--~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd 196 (353)
T PRK10851 157 ILLLDEP--FGALDAQVRKELRRWLRQLHEELKFTSVFVTHD 196 (353)
T ss_pred EEEEeCC--CccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 4667777 499999999999999999976545556666653
No 335
>PF03802 CitX: Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase; InterPro: IPR005551 Members of this protein family are annotated as CitX, containing the CitX domain, the domain is also found in the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25 from EC), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems.; GO: 0051191 prosthetic group biosynthetic process
Probab=21.24 E-value=2.2e+02 Score=20.52 Aligned_cols=60 Identities=22% Similarity=0.192 Sum_probs=41.3
Q ss_pred cEEEEEEcCCC--CCCCCCHHHHHHHHHHHHHHhcCCCeeEEE----E--EcCCCCccCCCCcchhhh
Q psy9280 51 NVGLVQLNRPK--SLNALCDALVSEVAAAVQQFDQDSSVAAIV----L--TGNEKAFAAGADIKEMLN 110 (143)
Q Consensus 51 ~V~~I~ln~p~--~~Nal~~~~~~el~~~l~~~~~d~~vr~vV----l--tg~g~~FsaG~Dl~~~~~ 110 (143)
.+..++||=|. |.|......++...+.+...-....+..+. . ||...+|..-.|...+..
T Consensus 29 ~lis~tlNiPG~iK~~~~~~~~f~~~~~~l~~~l~~~~~~~~~~~~~~~~tGpe~~~~v~~~a~~vK~ 96 (170)
T PF03802_consen 29 PLISFTLNIPGPIKNNPLIRRIFDEGIEALEQQLSANGIFKLEQEILNDPTGPEAFLVVDGDAEEVKR 96 (170)
T ss_pred cEEEEEEEccccccCCHHHHHHHHHHHHHHHHHHHHcCCeEeeeeeeecCCcceeeEEeCCCHHHHHH
Confidence 68889999765 888888888888777776665554444432 2 344467788888666554
No 336
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=21.24 E-value=3.2e+02 Score=19.55 Aligned_cols=37 Identities=22% Similarity=0.433 Sum_probs=26.7
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
.+-|+.|- +.+|....+.+.+.+.++... . +.||++.
T Consensus 156 llllDEP~--~~LD~~~~~~l~~~l~~~~~~-~-~tvi~~s 192 (213)
T cd03262 156 VMLFDEPT--SALDPELVGEVLDVMKDLAEE-G-MTMVVVT 192 (213)
T ss_pred EEEEeCCc--cCCCHHHHHHHHHHHHHHHHc-C-CEEEEEe
Confidence 56677774 899999999999999988653 3 3444443
No 337
>PTZ00386 formyl tetrahydrofolate synthetase; Provisional
Probab=21.13 E-value=1.6e+02 Score=25.93 Aligned_cols=23 Identities=39% Similarity=0.583 Sum_probs=17.8
Q ss_pred HHHHHHHHHhcCCCcEEEEEecC
Q psy9280 120 GLLEHWDNITKAKKPVIAAVNGY 142 (143)
Q Consensus 120 ~~~~~~~~l~~~~kP~IAav~G~ 142 (143)
.+..-++.+..+..|+|.|||-+
T Consensus 425 NL~~Hien~~~fgvpvVVAIN~F 447 (625)
T PTZ00386 425 NLQRHIQNIRKFGVPVVVALNKF 447 (625)
T ss_pred HHHHHHHHHHHcCCCeEEEecCC
Confidence 34445678889999999999854
No 338
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=21.08 E-value=1.7e+02 Score=20.51 Aligned_cols=33 Identities=21% Similarity=0.388 Sum_probs=21.7
Q ss_pred HHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcch
Q psy9280 73 EVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKE 107 (143)
Q Consensus 73 el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~ 107 (143)
+..+.++++..++ .+|++...|+.|+-|.|+..
T Consensus 47 ~~~~~l~~~~~~~--~~il~~v~~g~~~EGiD~~~ 79 (167)
T PF13307_consen 47 SRDELLEEFKRGE--GAILLAVAGGSFSEGIDFPG 79 (167)
T ss_dssp HHHHHHHHHCCSS--SEEEEEETTSCCGSSS--EC
T ss_pred hHHHHHHHHHhcc--CeEEEEEecccEEEeecCCC
Confidence 4555566665543 57777777888999999973
No 339
>TIGR01111 mtrA N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit A. coenzyme M methyltransferase subunit A in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase.
Probab=20.96 E-value=1.4e+02 Score=22.89 Aligned_cols=60 Identities=18% Similarity=0.284 Sum_probs=39.7
Q ss_pred CcEEEEEEcCCC-------CCCCCCHHHHHH---HHHHHHHHhcCCCeeEEEEEcCC-CCccCCCCcchhh
Q psy9280 50 KNVGLVQLNRPK-------SLNALCDALVSE---VAAAVQQFDQDSSVAAIVLTGNE-KAFAAGADIKEML 109 (143)
Q Consensus 50 ~~V~~I~ln~p~-------~~Nal~~~~~~e---l~~~l~~~~~d~~vr~vVltg~g-~~FsaG~Dl~~~~ 109 (143)
..|+++||.... +.-++......| +...+..+-.++.+|.+|++|.. +.+-+|.-|..+.
T Consensus 25 SpVAV~TL~Sh~~~~~i~~agaAI~G~~~TENlGIEKvIaNvisNpNIRflilcG~Ev~GHltGqsL~aLh 95 (238)
T TIGR01111 25 SPVLVVTLGSHIEEQIILDAGAAIAGPCKTENLGIEKVVANIISNPNIRFLILCGSEVQGHITGQSFKALH 95 (238)
T ss_pred CceEEEEccccccccchhhcCceeeccccccccCHHHHHHHHhcCCCceEEEEecCcccCccccHHHHHHH
Confidence 478888887542 112233333332 66777777789999999999964 5677777776654
No 340
>PHA02546 47 endonuclease subunit; Provisional
Probab=20.93 E-value=3.9e+02 Score=21.24 Aligned_cols=27 Identities=7% Similarity=0.177 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHhcCCCeeEEEEEcC
Q psy9280 68 DALVSEVAAAVQQFDQDSSVAAIVLTGN 95 (143)
Q Consensus 68 ~~~~~el~~~l~~~~~d~~vr~vVltg~ 95 (143)
.+....+.++++.+.++ .+.+|+++|.
T Consensus 22 ~~~~~~l~~ii~~a~~~-~vD~VliaGD 48 (340)
T PHA02546 22 NYQLKFIKQAIEYSKAH-GITTWIQLGD 48 (340)
T ss_pred HHHHHHHHHHHHHHHHc-CCCEEEECCc
Confidence 34455566666666544 4789999983
No 341
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=20.83 E-value=3.3e+02 Score=19.80 Aligned_cols=37 Identities=11% Similarity=0.302 Sum_probs=27.6
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
++-|+.|- +.+|....+++.+.+.++... . +.||++.
T Consensus 154 llllDEPt--~~LD~~~~~~~~~~l~~~~~~-~-~tii~~s 190 (232)
T cd03218 154 FLLLDEPF--AGVDPIAVQDIQKIIKILKDR-G-IGVLITD 190 (232)
T ss_pred EEEecCCc--ccCCHHHHHHHHHHHHHHHHC-C-CEEEEEe
Confidence 46677875 999999999999999988653 3 3455543
No 342
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=20.78 E-value=3.1e+02 Score=20.81 Aligned_cols=28 Identities=18% Similarity=0.279 Sum_probs=23.8
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQ 83 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~ 83 (143)
.+-|+.|- +.+|....+.+.+.+.++..
T Consensus 166 lllLDEPt--~~LD~~~~~~l~~~l~~~~~ 193 (280)
T PRK13649 166 ILVLDEPT--AGLDPKGRKELMTLFKKLHQ 193 (280)
T ss_pred EEEEeCCc--ccCCHHHHHHHHHHHHHHHH
Confidence 56777775 99999999999999998864
No 343
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=20.77 E-value=5.4e+02 Score=22.01 Aligned_cols=72 Identities=11% Similarity=0.097 Sum_probs=47.1
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchhhhhhhhhhHHhHHHHHHHHHhcCCCcEEEEEecC
Q psy9280 63 LNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQTYAANVKTGLLEHWDNITKAKKPVIAAVNGY 142 (143)
Q Consensus 63 ~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~IAav~G~ 142 (143)
..+++.+-.+...+.++.+++.. +=+|.|.-.++ |..|.+-+ .....+...+++.++....+|.|+.|-|.
T Consensus 328 ~G~~~~~~~~K~~r~i~~a~~~~-lPlV~lvDs~G-~~~g~~~E-------~~g~~~~~a~~~~a~~~~~vP~isvi~g~ 398 (512)
T TIGR01117 328 AGCLDIDSSDKIARFIRFCDAFN-IPIVTFVDVPG-FLPGVNQE-------YGGIIRHGAKVLYAYSEATVPKVTIITRK 398 (512)
T ss_pred cCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEeCcC-ccccHHHH-------HHHHHHHHHHHHHHHHhCCCCEEEEEcCC
Confidence 45799999999999999886543 44555543333 55553311 11112345566788888999999999776
Q ss_pred C
Q psy9280 143 A 143 (143)
Q Consensus 143 a 143 (143)
+
T Consensus 399 ~ 399 (512)
T TIGR01117 399 A 399 (512)
T ss_pred C
Confidence 4
No 344
>KOG3985|consensus
Probab=20.64 E-value=2.5e+02 Score=21.76 Aligned_cols=54 Identities=15% Similarity=0.190 Sum_probs=39.6
Q ss_pred CcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchh
Q psy9280 50 KNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEM 108 (143)
Q Consensus 50 ~~V~~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~ 108 (143)
.+|++|.|..| ++..+.+-|.++-.++..-..-+.-+++=.|..||+-+.-..+
T Consensus 133 ~gVcHv~~~~p-----f~~k~reil~~~a~~l~~~~hd~~tvVciEGPrFStRAES~mf 186 (283)
T KOG3985|consen 133 GGVCHVPFGPP-----FSQKLREILISTAKELTNPHHDDGTVVCIEGPRFSTRAESKMF 186 (283)
T ss_pred CceEeccCCCC-----cCHHHHHHHHHHHHHhcCCcCCceeEEEeeCCccchHHHHHHH
Confidence 38999998554 8888888898888888754333667777778889875554433
No 345
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=20.41 E-value=3.1e+02 Score=19.62 Aligned_cols=36 Identities=11% Similarity=0.264 Sum_probs=27.4
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
.+-|+.|- +.+|....+.+.+.+.++... +.+|+..
T Consensus 151 llllDEPt--~~LD~~~~~~l~~~l~~~~~~---~tii~vs 186 (211)
T cd03264 151 ILIVDEPT--AGLDPEERIRFRNLLSELGED---RIVILST 186 (211)
T ss_pred EEEEcCCc--ccCCHHHHHHHHHHHHHHhCC---CEEEEEc
Confidence 45677775 999999999999999998652 4555544
No 346
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=20.40 E-value=3.3e+02 Score=20.89 Aligned_cols=38 Identities=16% Similarity=0.270 Sum_probs=28.0
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
.+.|+.|- +.+|....+++.+.+.++.+. ..-+|++|-
T Consensus 166 lLlLDEPt--~gLD~~~~~~l~~~l~~l~~~-g~tvlivsH 203 (287)
T PRK13641 166 ILCLDEPA--AGLDPEGRKEMMQLFKDYQKA-GHTVILVTH 203 (287)
T ss_pred EEEEECCC--CCCCHHHHHHHHHHHHHHHhC-CCEEEEEeC
Confidence 56788875 999999999999999998543 333344443
No 347
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=20.37 E-value=2.6e+02 Score=23.48 Aligned_cols=39 Identities=15% Similarity=0.210 Sum_probs=29.1
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
++-|+-|- |.+|....+.+.+.+.++..+...-+|++|-
T Consensus 189 lllLDEPt--~~LD~~~~~~l~~~l~~l~~~~g~tviivtH 227 (520)
T TIGR03269 189 LFLADEPT--GTLDPQTAKLVHNALEEAVKASGISMVLTSH 227 (520)
T ss_pred EEEeeCCc--ccCCHHHHHHHHHHHHHHHHhcCcEEEEEeC
Confidence 56777774 9999999999999999986544434444454
No 348
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]
Probab=20.28 E-value=73 Score=22.76 Aligned_cols=36 Identities=17% Similarity=0.285 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhcCCCeeEEEEEcC--CCCccCCCCcch
Q psy9280 72 SEVAAAVQQFDQDSSVAAIVLTGN--EKAFAAGADIKE 107 (143)
Q Consensus 72 ~el~~~l~~~~~d~~vr~vVltg~--g~~FsaG~Dl~~ 107 (143)
.-|...+..++.|+++.-|-+|-. |-..|+|+-+..
T Consensus 28 ~~lk~ll~lveedp~i~~i~vtREEeg~GIcAGa~lAG 65 (172)
T COG4032 28 DNLKNLLPLVEEDPEIPEIPVTREEEGVGICAGAYLAG 65 (172)
T ss_pred HHHHhHHHHHhcCCCcccccccchhcceeeehhhhhcC
Confidence 456777888899999999988864 455799988754
No 349
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=20.23 E-value=3.3e+02 Score=20.00 Aligned_cols=37 Identities=11% Similarity=0.350 Sum_probs=27.5
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
.+-|+.|- +.+|.+..+.+.+.+.++... . +.+++..
T Consensus 162 llilDEPt--~~LD~~~~~~l~~~l~~~~~~-~-~tii~~s 198 (242)
T PRK11124 162 VLLFDEPT--AALDPEITAQIVSIIRELAET-G-ITQVIVT 198 (242)
T ss_pred EEEEcCCC--CcCCHHHHHHHHHHHHHHHHc-C-CEEEEEe
Confidence 56777875 999999999999999998643 3 3444443
No 350
>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=20.23 E-value=1.9e+02 Score=20.23 Aligned_cols=32 Identities=9% Similarity=0.152 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHhcCCCeeEEEEEcCCCCcc
Q psy9280 69 ALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFA 100 (143)
Q Consensus 69 ~~~~el~~~l~~~~~d~~vr~vVltg~g~~Fs 100 (143)
+++.++.+..+++.....++-|++.|-|+...
T Consensus 2 ~~~~~i~~~~~~i~~~~~~~~iv~~GiGGS~l 33 (158)
T cd05015 2 AELERIKEFAEKVRSGKKITDVVVIGIGGSDL 33 (158)
T ss_pred hHHHHHHHHHHHHhcCCCCCEEEEEecCccHH
Confidence 45677888888886534578899988776554
No 351
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=20.18 E-value=3e+02 Score=21.89 Aligned_cols=39 Identities=10% Similarity=0.250 Sum_probs=28.6
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
++-|+.|- +.+|.....++.+.+.++..+...-++++|-
T Consensus 161 iLlLDEPt--s~LD~~~~~~l~~~L~~l~~~~g~tiilvtH 199 (343)
T PRK11153 161 VLLCDEAT--SALDPATTRSILELLKDINRELGLTIVLITH 199 (343)
T ss_pred EEEEeCCc--ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 56677774 9999999999999999986543433444443
No 352
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=20.11 E-value=3e+02 Score=20.07 Aligned_cols=36 Identities=17% Similarity=0.286 Sum_probs=27.3
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
++-|+.|- +.+|....+++.+.+.++.. .. .||++.
T Consensus 158 llllDEP~--~~LD~~~~~~l~~~l~~~~~--~~-tiii~s 193 (236)
T cd03253 158 ILLLDEAT--SALDTHTEREIQAALRDVSK--GR-TTIVIA 193 (236)
T ss_pred EEEEeCCc--ccCCHHHHHHHHHHHHHhcC--CC-EEEEEc
Confidence 56777874 99999999999999998864 33 444443
No 353
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=20.09 E-value=1.1e+02 Score=22.06 Aligned_cols=37 Identities=22% Similarity=0.390 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHhcCC--CeeEEEEEcCCCCccCCCCcchhh
Q psy9280 69 ALVSEVAAAVQQFDQDS--SVAAIVLTGNEKAFAAGADIKEML 109 (143)
Q Consensus 69 ~~~~el~~~l~~~~~d~--~vr~vVltg~g~~FsaG~Dl~~~~ 109 (143)
....++..+++.+...+ +..-|.+.| ||-|+-+....
T Consensus 77 ~~~~~~~aa~~~l~~~~~~~~~kig~vG----fc~GG~~a~~~ 115 (218)
T PF01738_consen 77 QVAADLQAAVDYLRAQPEVDPGKIGVVG----FCWGGKLALLL 115 (218)
T ss_dssp HHHHHHHHHHHHHHCTTTCEEEEEEEEE----ETHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCCCcEEEEE----EecchHHhhhh
Confidence 45566778888888877 345566666 88888775543
No 354
>PRK06754 mtnB methylthioribulose-1-phosphate dehydratase; Reviewed
Probab=20.03 E-value=3.6e+02 Score=19.81 Aligned_cols=39 Identities=15% Similarity=0.148 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhcCCCeeEEEEEcCCCCccCCCCcchhhhhh
Q psy9280 72 SEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQT 112 (143)
Q Consensus 72 ~el~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~ 112 (143)
.+|.+.+.+.-. ++.+++++.+. +.++.|-|+.+.....
T Consensus 148 ~eLa~~v~~~l~-~~~~avLl~nH-G~v~~G~~l~~A~~~~ 186 (208)
T PRK06754 148 PTLAEEFAKHIQ-GDSGAVLIRNH-GITVWGRDAFEAKKHL 186 (208)
T ss_pred HHHHHHHHHHhc-cCCcEEEECCC-ceEEEeCCHHHHHHHH
Confidence 355555444433 12457777655 4699999998855443
No 355
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=20.00 E-value=3.5e+02 Score=19.84 Aligned_cols=37 Identities=24% Similarity=0.417 Sum_probs=27.6
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEc
Q psy9280 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94 (143)
Q Consensus 54 ~I~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg 94 (143)
.+-|+.|- +.+|.....++.+.+.++... . +.+|++.
T Consensus 157 llllDEP~--~~LD~~~~~~l~~~l~~~~~~-~-~tiii~s 193 (240)
T PRK09493 157 LMLFDEPT--SALDPELRHEVLKVMQDLAEE-G-MTMVIVT 193 (240)
T ss_pred EEEEcCCc--ccCCHHHHHHHHHHHHHHHHc-C-CEEEEEe
Confidence 56677775 999999999999999998643 3 3444543
Done!