RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9280
(143 letters)
>gnl|CDD|180295 PRK05862, PRK05862, enoyl-CoA hydratase; Provisional.
Length = 257
Score = 135 bits (343), Expect = 1e-40
Identities = 56/106 (52%), Positives = 76/106 (71%), Gaps = 3/106 (2%)
Query: 38 FENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEK 97
+E ILV+ G+ VGL+ LNRPK+LNAL DAL+ E+ AA+ FD D + AIV+TG+EK
Sbjct: 3 YETILVETRGR---VGLITLNRPKALNALNDALMDELGAALAAFDADEGIGAIVITGSEK 59
Query: 98 AFAAGADIKEMLNQTYAANVKTGLLEHWDNITKAKKPVIAAVNGYA 143
AFAAGADIKEM + ++ K + +W+ + + +KPVIAAV GYA
Sbjct: 60 AFAAGADIKEMADLSFMDVYKGDYITNWEKVARIRKPVIAAVAGYA 105
>gnl|CDD|182026 PRK09674, PRK09674, enoyl-CoA hydratase-isomerase; Provisional.
Length = 255
Score = 106 bits (265), Expect = 5e-29
Identities = 38/92 (41%), Positives = 58/92 (63%)
Query: 52 VGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQ 111
V L+ LNRP++ NAL +AL++++ ++ D+S+ V+TGN + FAAGAD+ EM +
Sbjct: 12 VLLLTLNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMAEK 71
Query: 112 TYAANVKTGLLEHWDNITKAKKPVIAAVNGYA 143
AA + + W + KP+IAAVNGYA
Sbjct: 72 DLAATLNDPRPQLWQRLQAFNKPLIAAVNGYA 103
>gnl|CDD|201191 pfam00378, ECH, Enoyl-CoA hydratase/isomerase family. This family
contains a diverse set of enzymes including: Enoyl-CoA
hydratase. Napthoate synthase. Carnitate racemase.
3-hydoxybutyryl-CoA dehydratase. Dodecanoyl-CoA
delta-isomerase.
Length = 245
Score = 105 bits (264), Expect = 6e-29
Identities = 44/101 (43%), Positives = 62/101 (61%), Gaps = 2/101 (1%)
Query: 45 KVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGAD 104
V +++L+RP+++NAL L++E+ A+++ +QD SV AIVLTG AF+AGAD
Sbjct: 1 LYELEAGVAVIKLDRPEAVNALSAELLTELIQALEKLEQDPSVKAIVLTGGPGAFSAGAD 60
Query: 105 IKEMLNQTYA--ANVKTGLLEHWDNITKAKKPVIAAVNGYA 143
IKEM + A A + W + KPVIAAVNGYA
Sbjct: 61 IKEMAAEPLAQQAQFSLEAQDLWSRLEDLPKPVIAAVNGYA 101
>gnl|CDD|119339 cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase
superfamily. This superfamily contains a diverse set of
enzymes including enoyl-CoA hydratase, napthoate
synthase, methylmalonyl-CoA decarboxylase,
3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA
isomerase. Many of these play important roles in fatty
acid metabolism. In addition to a conserved structural
core and the formation of trimers (or dimers of
trimers), a common feature in this superfamily is the
stabilization of an enolate anion intermediate derived
from an acyl-CoA substrate. This is accomplished by two
conserved backbone NH groups in active sites that form
an oxyanion hole.
Length = 195
Score = 99 bits (250), Expect = 2e-27
Identities = 42/107 (39%), Positives = 60/107 (56%), Gaps = 7/107 (6%)
Query: 41 ILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFA 100
+LV++ G V + LNRP+ NAL ++ E+AAA+ + + D V +VLTG KAF
Sbjct: 1 VLVERDG---GVATITLNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFC 57
Query: 101 AGADIKEMLNQTYAANVKTGLLEHWDNITKA----KKPVIAAVNGYA 143
AGAD+KE+ + A + + +A KPVIAAVNG A
Sbjct: 58 AGADLKELAALSDAGEEARAFIRELQELLRALLRLPKPVIAAVNGAA 104
>gnl|CDD|236162 PRK08138, PRK08138, enoyl-CoA hydratase; Provisional.
Length = 261
Score = 97.8 bits (244), Expect = 7e-26
Identities = 41/92 (44%), Positives = 54/92 (58%)
Query: 52 VGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQ 111
V L++LNRP++ NAL + ++A + +D + AIVLTG EK FAAGADIKE
Sbjct: 18 VALLRLNRPEARNALNMEVRQQLAEHFTELSEDPDIRAIVLTGGEKVFAAGADIKEFATA 77
Query: 112 TYAANVKTGLLEHWDNITKAKKPVIAAVNGYA 143
+W+ I + KPVIAAVNGYA
Sbjct: 78 GAIEMYLRHTERYWEAIAQCPKPVIAAVNGYA 109
>gnl|CDD|223955 COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid
metabolism].
Length = 257
Score = 93.2 bits (232), Expect = 3e-24
Identities = 44/112 (39%), Positives = 65/112 (58%), Gaps = 6/112 (5%)
Query: 35 TVKFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94
+E ILV++ + ++ LNRP+ LNAL ++ E+A A+ + + D V +VLTG
Sbjct: 1 MTTYETILVERED---GIAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTG 57
Query: 95 NEKAFAAGADIKEMLNQ---TYAANVKTGLLEHWDNITKAKKPVIAAVNGYA 143
KAF+AGAD+KE+L+ A N+ + + KPVIAAVNGYA
Sbjct: 58 AGKAFSAGADLKELLSPEDGNAAENLMQPGQDLLRALADLPKPVIAAVNGYA 109
>gnl|CDD|180270 PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydratase; Validated.
Length = 260
Score = 84.0 bits (208), Expect = 1e-20
Identities = 43/109 (39%), Positives = 66/109 (60%), Gaps = 6/109 (5%)
Query: 38 FENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG-NE 96
+N++++K G ++ +V +NRPK+LNAL + E+ + + D +V A++LTG E
Sbjct: 3 LKNVILEKEG---HIAVVTINRPKALNALNSETLKELDTVLDDIENDDNVYAVILTGAGE 59
Query: 97 KAFAAGADIKEMLNQTYAANVKTGLLEH--WDNITKAKKPVIAAVNGYA 143
KAF AGADI EM + K GLL + + + KPVIAA+NG+A
Sbjct: 60 KAFVAGADISEMKDLNEEEGRKFGLLGNKVFRKLENLDKPVIAAINGFA 108
>gnl|CDD|235733 PRK06190, PRK06190, enoyl-CoA hydratase; Provisional.
Length = 258
Score = 79.6 bits (197), Expect = 6e-19
Identities = 40/107 (37%), Positives = 57/107 (53%), Gaps = 11/107 (10%)
Query: 41 ILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFA 100
+LV+ + V + LNRP++ NAL AL + AA+ + D D V +VLTG + AF
Sbjct: 6 LLVETHDR---VRTLTLNRPEARNALSAALRRALFAALAEADADDDVDVVVLTGADPAFC 62
Query: 101 AGADIKEMLNQTYAANVKTGLLEHWDNITKA----KKPVIAAVNGYA 143
AG D+KE+ A + L N + A +KPVI A+NG A
Sbjct: 63 AGLDLKELGGDGSAYGAQDAL----PNPSPAWPAMRKPVIGAINGAA 105
>gnl|CDD|235852 PRK06688, PRK06688, enoyl-CoA hydratase; Provisional.
Length = 259
Score = 76.8 bits (190), Expect = 7e-18
Identities = 34/95 (35%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
Query: 52 VGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQ 111
V + +NRP NAL A+ +A A++ D +V +VLTG +AF+AG DIK+
Sbjct: 15 VLTITINRPDKKNALTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFPKA 74
Query: 112 TYAANVKTGLLEHWD---NITKAKKPVIAAVNGYA 143
L I KPV+AAVNG A
Sbjct: 75 --PPKPPDELAPVNRFLRAIAALPKPVVAAVNGPA 107
>gnl|CDD|215480 PLN02888, PLN02888, enoyl-CoA hydratase.
Length = 265
Score = 74.4 bits (183), Expect = 6e-17
Identities = 42/116 (36%), Positives = 63/116 (54%), Gaps = 13/116 (11%)
Query: 33 MSTVKFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVL 92
TV ILV K + + +NRPK+LNAL ++ E+AAA ++ D+D SV I+L
Sbjct: 3 TQTVSENLILVPK--SRNGIATITINRPKALNALTRPMMVELAAAFKRLDEDDSVKVIIL 60
Query: 93 TGNEKAFAAGADIKEMLNQTYAANVKTG--LLEHWDNIT---KAKKPVIAAVNGYA 143
TG+ +AF +G D+ T A V G D + + +KP+I A+NG+A
Sbjct: 61 TGSGRAFCSGVDL------TAAEEVFKGDVKDVETDPVAQMERCRKPIIGAINGFA 110
>gnl|CDD|181069 PRK07657, PRK07657, enoyl-CoA hydratase; Provisional.
Length = 260
Score = 69.0 bits (169), Expect = 6e-15
Identities = 40/108 (37%), Positives = 66/108 (61%), Gaps = 5/108 (4%)
Query: 39 ENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG-NEK 97
+NI VD V +V + LNRP++ NAL AL+ E+ + Q +++++V ++LTG EK
Sbjct: 3 QNISVDYV--TPHVVKITLNRPRAANALSLALLEELQNILTQINEEANVRVVILTGAGEK 60
Query: 98 AFAAGADIKEM--LNQTYAANVKTGLLEHWDNITKAKKPVIAAVNGYA 143
AF AGAD+KE +N+ + + + + + + +PVIAA+NG A
Sbjct: 61 AFCAGADLKERAGMNEEQVRHAVSLIRTTMEMVEQLPQPVIAAINGIA 108
>gnl|CDD|180472 PRK06210, PRK06210, enoyl-CoA hydratase; Provisional.
Length = 272
Score = 69.0 bits (169), Expect = 7e-15
Identities = 38/118 (32%), Positives = 58/118 (49%), Gaps = 18/118 (15%)
Query: 38 FENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEK 97
++ +L + + V ++ LNRP LNA + +EV AA+ + + D +V IVLTG +
Sbjct: 4 YDAVLYE--VADSGVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAGR 61
Query: 98 AFAAGADIKEMLNQTYAANVKTG--------LLEHWDNITKA------KKPVIAAVNG 141
F AGAD+ E+ QT + D T+ +KPVIAA+NG
Sbjct: 62 GFCAGADMGEL--QTIDPSDGRRDTDVRPFVGNRRPDYQTRYHFLTALRKPVIAAING 117
>gnl|CDD|235664 PRK05995, PRK05995, enoyl-CoA hydratase; Provisional.
Length = 262
Score = 68.0 bits (167), Expect = 1e-14
Identities = 40/109 (36%), Positives = 59/109 (54%), Gaps = 8/109 (7%)
Query: 38 FENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEK 97
+E + +++ G+ V V LNRP NA + +++E+ AA + D D SV A+VL G K
Sbjct: 3 YETLEIEQRGQ---VATVTLNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGAGK 59
Query: 98 AFAAGADI---KEMLNQTYAANVKTG--LLEHWDNITKAKKPVIAAVNG 141
AF AGAD+ K+M + N L + I + KPVIA V+G
Sbjct: 60 AFCAGADLNWMKKMAGYSDDENRADARRLADMLRAIYRCPKPVIARVHG 108
>gnl|CDD|236115 PRK07854, PRK07854, enoyl-CoA hydratase; Provisional.
Length = 243
Score = 67.4 bits (165), Expect = 2e-14
Identities = 38/93 (40%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
Query: 51 NVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLN 110
V ++L RP+ NAL L E+ AV++ D S AIVLTG F AGAD+
Sbjct: 9 QVLTIELQRPERRNALNAELCEELREAVRKAV-DESARAIVLTGQGTVFCAGADLS---G 64
Query: 111 QTYAANVKTGLLEHWDNITKAKKPVIAAVNGYA 143
YA + L+E I A PVIAA+NG A
Sbjct: 65 DVYADDFPDALIEMLHAIDAAPVPVIAAINGPA 97
>gnl|CDD|180335 PRK05980, PRK05980, enoyl-CoA hydratase; Provisional.
Length = 260
Score = 66.7 bits (163), Expect = 3e-14
Identities = 42/106 (39%), Positives = 57/106 (53%), Gaps = 21/106 (19%)
Query: 52 VGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG-NEKAFAAGADIKEMLN 110
+ L+ LNRP+ LNAL AL+ + A + + D SV A++LTG ++AF+AGADI E +
Sbjct: 13 IALLTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHE-FS 71
Query: 111 QTYAANVKTGL-------------LEHWDNITKAKKPVIAAVNGYA 143
+ AA L LE + KPVIAAVNG A
Sbjct: 72 ASVAAGADVALRDFVRRGQAMTARLEAF------PKPVIAAVNGLA 111
>gnl|CDD|235533 PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrolase; Provisional.
Length = 342
Score = 67.2 bits (165), Expect = 5e-14
Identities = 25/56 (44%), Positives = 39/56 (69%), Gaps = 1/56 (1%)
Query: 52 VGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGN-EKAFAAGADIK 106
VG++ LNRPK+LNAL ++ + AA+ ++ D +VAA+V+ G E+ F AG DI+
Sbjct: 13 VGVITLNRPKALNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIR 68
>gnl|CDD|180591 PRK06494, PRK06494, enoyl-CoA hydratase; Provisional.
Length = 259
Score = 64.7 bits (158), Expect = 2e-13
Identities = 35/103 (33%), Positives = 50/103 (48%), Gaps = 8/103 (7%)
Query: 45 KVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG-NEKAFAAGA 103
V + +V +V LNRP+ +NAL E+ F D ++TG +KAF+AG
Sbjct: 7 TVERKGHVTIVTLNRPEVMNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGN 66
Query: 104 DIKEMLNQTYAANVKTG---LLEHWDNITKAKKPVIAAVNGYA 143
D+KE ++G L +D KP+IAAVNG A
Sbjct: 67 DLKEQAAGGKRGWPESGFGGLTSRFD----LDKPIIAAVNGVA 105
>gnl|CDD|181723 PRK09245, PRK09245, enoyl-CoA hydratase; Provisional.
Length = 266
Score = 63.8 bits (156), Expect = 4e-13
Identities = 39/113 (34%), Positives = 62/113 (54%), Gaps = 13/113 (11%)
Query: 41 ILVDKVGKNKNVGLVQLNRPKSLNALCD-ALVSEVAAAVQQFDQDSSVAAIVLTGNEKAF 99
+LV++ G ++ + +NRP++ NAL D V + AA + D SV A++LTG AF
Sbjct: 5 LLVERDG---HIVTLTMNRPETRNALSDNDAVDALVAACAAINADRSVRAVILTGAGTAF 61
Query: 100 AAGADIKEMLNQTYA-----ANVKTGLLEHWDNITKA----KKPVIAAVNGYA 143
++G ++K+M + A A+++ G I A + PVIAAVNG A
Sbjct: 62 SSGGNVKDMRARVGAFGGSPADIRQGYRHGIQRIPLALYNLEVPVIAAVNGPA 114
>gnl|CDD|236206 PRK08260, PRK08260, enoyl-CoA hydratase; Provisional.
Length = 296
Score = 63.9 bits (156), Expect = 5e-13
Identities = 38/126 (30%), Positives = 54/126 (42%), Gaps = 24/126 (19%)
Query: 38 FENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEK 97
+E I D + + LNRP LNA + E+ A D D +V A+++TG +
Sbjct: 3 YETIRYDV---ADGIATITLNRPDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGAGR 59
Query: 98 AFAAGADIKEMLNQTYAANVKTGLLEHWDN--------------------ITKAKKPVIA 137
AF AGAD+ N T+ + +E + I + KPVIA
Sbjct: 60 AFCAGADLSAGGN-TFDLDAPRTPVEADEEDRADPSDDGVRDGGGRVTLRIFDSLKPVIA 118
Query: 138 AVNGYA 143
AVNG A
Sbjct: 119 AVNGPA 124
>gnl|CDD|168351 PRK06023, PRK06023, enoyl-CoA hydratase; Provisional.
Length = 251
Score = 62.5 bits (152), Expect = 1e-12
Identities = 33/108 (30%), Positives = 62/108 (57%), Gaps = 5/108 (4%)
Query: 39 ENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKA 98
++ILV++ G + V +++ NRP+ NA+ A+ + +A A++ D D ++ A V G E
Sbjct: 3 DHILVERPGAHPGVQVIRFNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLGTEGC 62
Query: 99 FAAGADIKEMLNQTYAANVKTGLLEHWD---NITKAKKPVIAAVNGYA 143
F+AG D+++ L A + E D + +A+KP+++ V+G A
Sbjct: 63 FSAGNDMQDFL--AAAMGGTSFGSEILDFLIALAEAEKPIVSGVDGLA 108
>gnl|CDD|181008 PRK07509, PRK07509, enoyl-CoA hydratase; Provisional.
Length = 262
Score = 62.6 bits (153), Expect = 1e-12
Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 13/110 (11%)
Query: 45 KVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGAD 104
V + V+LNRP +NAL A+ E+ A +++ +D + A++L+G AF AG D
Sbjct: 6 SVTIEDGIADVRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGEGGAFCAGLD 65
Query: 105 IKEMLNQTY-AANVKTGLLEHWDNITKAKK----------PVIAAVNGYA 143
+K + + A + L N+ A++ PVIAA+ G
Sbjct: 66 VKSVASSPGNAVKLLFKRLPGNANL--AQRVSLGWRRLPVPVIAALEGVC 113
>gnl|CDD|181249 PRK08139, PRK08139, enoyl-CoA hydratase; Validated.
Length = 266
Score = 62.7 bits (153), Expect = 1e-12
Identities = 33/90 (36%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 57 LNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEML---NQTY 113
LNRP++ NAL +A+++ + AA+ D SV +VL KAF AG D+KEM Y
Sbjct: 26 LNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAAGKAFCAGHDLKEMRAARGLAY 85
Query: 114 AANVKTGLLEHWDNITKAKKPVIAAVNGYA 143
+ I +PVIA V+G A
Sbjct: 86 FRALFARCSRVMQAIVALPQPVIARVHGIA 115
>gnl|CDD|181070 PRK07658, PRK07658, enoyl-CoA hydratase; Provisional.
Length = 257
Score = 62.3 bits (152), Expect = 2e-12
Identities = 31/96 (32%), Positives = 54/96 (56%), Gaps = 6/96 (6%)
Query: 52 VGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEML-- 109
V ++ LN P + NAL ++ E++ + Q ++D +V +V+ G + F+AGADIKE
Sbjct: 12 VAVITLNHPPA-NALSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSV 70
Query: 110 --NQTYAANVKTGLLEHWDNITKAKKPVIAAVNGYA 143
+ + G + ++ + K KPVIAA++G A
Sbjct: 71 TEAEQATELAQLGQVT-FERVEKFSKPVIAAIHGAA 105
>gnl|CDD|168580 PRK06495, PRK06495, enoyl-CoA hydratase; Provisional.
Length = 257
Score = 61.2 bits (149), Expect = 4e-12
Identities = 37/99 (37%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 51 NVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLN 110
+V +V L+ P +NAL L E+ A + + V +VLTG K F AGAD+K +
Sbjct: 13 HVAVVTLDNP-PVNALSRELRDELIAVFDEISERPDVRVVVLTGAGKVFCAGADLKGRPD 71
Query: 111 ------QTYAANVKTGLLEHWDNITKAKKPVIAAVNGYA 143
A N +T E + I + KPVIAAVNG A
Sbjct: 72 VIKGPGDLRAHNRRT--RECFHAIRECAKPVIAAVNGPA 108
>gnl|CDD|181122 PRK07799, PRK07799, enoyl-CoA hydratase; Provisional.
Length = 263
Score = 60.9 bits (148), Expect = 5e-12
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 13/99 (13%)
Query: 54 LVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQ-- 111
+V +NRP++ NAL ++ + A + D D + + +LTG AF AG D+K +
Sbjct: 17 IVTMNRPEARNALSTEMLRIMVDAWDRVDNDPDIRSCILTGAGGAFCAGMDLKAATKKPP 76
Query: 112 -------TYAANVKTGLLEHWDNITKAKKPVIAAVNGYA 143
+Y + LL+ + KP+IAAV G A
Sbjct: 77 GDSFKDGSYDPSRIDALLKG----RRLTKPLIAAVEGPA 111
>gnl|CDD|180987 PRK07468, PRK07468, enoyl-CoA hydratase; Provisional.
Length = 262
Score = 60.5 bits (147), Expect = 6e-12
Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 7/111 (6%)
Query: 38 FENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEK 97
FE I + + V + LNRP+ NAL +++E+ A ++ D++V +VLTG K
Sbjct: 3 FETIRIA--VDARGVATLTLNRPEKHNALSARMIAELTTAARRLAADAAVRVVVLTGAGK 60
Query: 98 AFAAGADIKEMLNQTYA-----ANVKTGLLEHWDNITKAKKPVIAAVNGYA 143
+F AG D+ M Q A L + KP+I + G A
Sbjct: 61 SFCAGGDLGWMRAQMTADRATRIEEARRLAMMLKALNDLPKPLIGRIQGQA 111
>gnl|CDD|236213 PRK08272, PRK08272, enoyl-CoA hydratase; Provisional.
Length = 302
Score = 60.8 bits (148), Expect = 7e-12
Identities = 34/138 (24%), Positives = 52/138 (37%), Gaps = 35/138 (25%)
Query: 33 MSTVKFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVL 92
+ T+ +E + + LNRP+ NA+ E+ AAV++ D D V I++
Sbjct: 9 LKTMTYE--------VTGRIARITLNRPEKGNAITADTPLELRAAVERADLDPGVHVILV 60
Query: 93 TGNEKAFAAGADIKEMLNQ------TYAANVKTGLLEH-----WDNIT------------ 129
+G K F AG D+ A K + H WD +
Sbjct: 61 SGAGKGFCAGYDLSAYAEGSSSGGGGGAYPGKRQAVNHLPDDPWDPMIDYQMMSRFVRGF 120
Query: 130 ----KAKKPVIAAVNGYA 143
A KP +A V+GY
Sbjct: 121 MSLWHAHKPTVAKVHGYC 138
>gnl|CDD|180423 PRK06143, PRK06143, enoyl-CoA hydratase; Provisional.
Length = 256
Score = 58.5 bits (142), Expect = 4e-11
Identities = 32/95 (33%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Query: 52 VGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG-NEKAFAAGADIKEM-- 108
V + + SLN L ++ + A++ D V +VL G EKAF GADIKEM
Sbjct: 17 VATLTIRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMAT 76
Query: 109 LNQTYAANVKTGLLEHWDNITKAKKPVIAAVNGYA 143
L+Q A + L + D + PVIA + G+
Sbjct: 77 LDQASAEAFISRLRDLCDAVRHFPVPVIARIPGWC 111
>gnl|CDD|236163 PRK08140, PRK08140, enoyl-CoA hydratase; Provisional.
Length = 262
Score = 58.4 bits (142), Expect = 4e-11
Identities = 35/112 (31%), Positives = 51/112 (45%), Gaps = 10/112 (8%)
Query: 38 FENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEK 97
+E IL+ V + LNRP LN+ + E+ A+ Q +D A++LTG +
Sbjct: 3 YETILLAIEA---GVATLTLNRPDKLNSFTREMHRELREALDQV-EDDGARALLLTGAGR 58
Query: 98 AFAAGADIKEMLNQTYAANVKTG-LLEHWDN-----ITKAKKPVIAAVNGYA 143
F AG D+ + A G +E + N + PVIAAVNG A
Sbjct: 59 GFCAGQDLADRDVTPGGAMPDLGESIETFYNPLVRRLRALPLPVIAAVNGVA 110
>gnl|CDD|236073 PRK07659, PRK07659, enoyl-CoA hydratase; Provisional.
Length = 260
Score = 58.1 bits (141), Expect = 6e-11
Identities = 35/113 (30%), Positives = 58/113 (51%), Gaps = 9/113 (7%)
Query: 35 TVKFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94
T K E++ V V + LNRP++LNAL + ++ E+ A+++ +SS +VL G
Sbjct: 2 TSKMESV---VVKYEGRVATIMLNRPEALNALDEPMLKELLQALKEV-AESSAHIVVLRG 57
Query: 95 NEKAFAAGADIKEMLNQTYAANVKTGLLEHWDNITKA----KKPVIAAVNGYA 143
N + F+AG DIK ML+ + ++ I K I+A++G A
Sbjct: 58 NGRGFSAGGDIKMMLSSNDESKFDG-VMNTISEIVVTLYTMPKLTISAIHGPA 109
>gnl|CDD|236205 PRK08259, PRK08259, enoyl-CoA hydratase; Provisional.
Length = 254
Score = 57.2 bits (139), Expect = 1e-10
Identities = 36/103 (34%), Positives = 50/103 (48%), Gaps = 10/103 (9%)
Query: 46 VGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADI 105
V +N V V LNRP+ NA+ + +A A + FD D + + VL G F AGAD+
Sbjct: 7 VERNGPVTTVILNRPEVRNAVDGPTAAALADAFRAFDADDAASVAVLWGAGGTFCAGADL 66
Query: 106 KEMLNQTYAANVKTGLLEHWDN---ITKAK--KPVIAAVNGYA 143
K + L D ++ + KPVIAAV+GYA
Sbjct: 67 KAV-----GTGRGNRLHPSGDGPMGPSRMRLSKPVIAAVSGYA 104
>gnl|CDD|181325 PRK08252, PRK08252, enoyl-CoA hydratase; Provisional.
Length = 254
Score = 56.9 bits (138), Expect = 1e-10
Identities = 34/107 (31%), Positives = 57/107 (53%), Gaps = 9/107 (8%)
Query: 39 ENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKA 98
+ +LV++ G V ++ +NRP++ NA+ A+ +AAA+ + D D ++ +LTG
Sbjct: 3 DEVLVERRG---RVLIITINRPEARNAVNAAVAQGLAAALDELDADPDLSVGILTGAGGT 59
Query: 99 FAAGADIKEMLNQTYAANVKTGLLEHWDNITKA--KKPVIAAVNGYA 143
F AG D+K + G +T+ +KP+IAAV GYA
Sbjct: 60 FCAGMDLKAFARGERPSIPGRGFG----GLTERPPRKPLIAAVEGYA 102
>gnl|CDD|179599 PRK03580, PRK03580, carnitinyl-CoA dehydratase; Provisional.
Length = 261
Score = 57.0 bits (138), Expect = 1e-10
Identities = 36/96 (37%), Positives = 48/96 (50%), Gaps = 13/96 (13%)
Query: 55 VQLNRPKSLNALCDALVS-EVAAAVQQFDQDSSV-AAIVLTGNEKAFAAGADIK-----E 107
+ L+RPK+ NA+ DA S + F D + AI+ EK F+AG D+K E
Sbjct: 16 ITLDRPKA-NAI-DAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGE 73
Query: 108 MLNQTYAANVKTGLLEHWDNITKAKKPVIAAVNGYA 143
+ + GL E +D KPVIAAVNGYA
Sbjct: 74 APDADFGPGGFAGLTEIFD----LDKPVIAAVNGYA 105
>gnl|CDD|180298 PRK05870, PRK05870, enoyl-CoA hydratase; Provisional.
Length = 249
Score = 56.3 bits (136), Expect = 2e-10
Identities = 34/95 (35%), Positives = 48/95 (50%), Gaps = 4/95 (4%)
Query: 52 VGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQ 111
V L+ +N P NA+ + +++ AAV + D V A+V+TG KAF AGAD+ L
Sbjct: 13 VALITVNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAGKAFCAGADLTA-LGA 71
Query: 112 TYAANVKTGLLEHWDN---ITKAKKPVIAAVNGYA 143
+ GL +D + P IAAVNG A
Sbjct: 72 APGRPAEDGLRRIYDGFLAVASCPLPTIAAVNGAA 106
>gnl|CDD|180424 PRK06144, PRK06144, enoyl-CoA hydratase; Provisional.
Length = 262
Score = 55.8 bits (135), Expect = 4e-10
Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 12/101 (11%)
Query: 51 NVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGN-EKAFAAGADIKEML 109
+ + NRP + NA+ A+ +A + D S+ A+VL G +KAF AG DI +
Sbjct: 17 GIARITFNRPAARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFR 76
Query: 110 NQT-------YAANVKTGLLEHWDNITKAKKPVIAAVNGYA 143
+ Y + L + + + P IAA+ G
Sbjct: 77 AFSTAEDAVAYERRIDRVL----GALEQLRVPTIAAIAGAC 113
>gnl|CDD|236383 PRK09120, PRK09120, p-hydroxycinnamoyl CoA hydratase/lyase;
Validated.
Length = 275
Score = 55.8 bits (135), Expect = 4e-10
Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 6/95 (6%)
Query: 55 VQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQTYA 114
V LNRP+ NA+ L E+ + + D +VLTG A++AG D+KE +T A
Sbjct: 21 VTLNRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSAGMDLKEYFRETDA 80
Query: 115 ----ANVKTGL--LEHWDNITKAKKPVIAAVNGYA 143
+ W + +KP IA VNG+
Sbjct: 81 QPEILQERIRREAYGWWRRLRWYQKPTIAMVNGWC 115
>gnl|CDD|178462 PLN02874, PLN02874, 3-hydroxyisobutyryl-CoA hydrolase-like protein.
Length = 379
Score = 56.0 bits (135), Expect = 4e-10
Identities = 25/68 (36%), Positives = 45/68 (66%), Gaps = 3/68 (4%)
Query: 39 ENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKA 98
E +L ++ G V ++ LNRP+ LN + ++VS +A ++Q+++D SV I++ G +A
Sbjct: 11 EVVLGEEKG---RVRVITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAGRA 67
Query: 99 FAAGADIK 106
F+AG D+K
Sbjct: 68 FSAGGDLK 75
>gnl|CDD|178568 PLN02988, PLN02988, 3-hydroxyisobutyryl-CoA hydrolase.
Length = 381
Score = 55.9 bits (134), Expect = 5e-10
Identities = 25/75 (33%), Positives = 42/75 (56%)
Query: 46 VGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADI 105
V + +V ++ LNRPK LNAL ++S + F++D SV ++L G+ +AF AG D+
Sbjct: 13 VEEKSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCAGGDV 72
Query: 106 KEMLNQTYAANVKTG 120
++ N + G
Sbjct: 73 AAVVRDIEQGNWRLG 87
>gnl|CDD|168278 PRK05864, PRK05864, enoyl-CoA hydratase; Provisional.
Length = 276
Score = 55.2 bits (133), Expect = 5e-10
Identities = 40/121 (33%), Positives = 63/121 (52%), Gaps = 13/121 (10%)
Query: 32 YMSTVKFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIV 91
Y ST+ +LVD + L+ LNRP+ +N++ ++ + A+ + D+SV +V
Sbjct: 4 YRSTMSL--VLVDH--PRPEIALITLNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVV 59
Query: 92 LTGNEKAFAAGADIK--------EMLNQ-TYAANVKTGLLEHWDNITKAKKPVIAAVNGY 142
LTG + F++GAD K E L + TYA L + + + +PVIAAVNG
Sbjct: 60 LTGAGRGFSSGADHKSAGVVPHVEGLTRPTYALRSMELLDDVILALRRLHQPVIAAVNGP 119
Query: 143 A 143
A
Sbjct: 120 A 120
>gnl|CDD|236109 PRK07827, PRK07827, enoyl-CoA hydratase; Provisional.
Length = 260
Score = 55.1 bits (133), Expect = 5e-10
Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 5/96 (5%)
Query: 52 VGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKE---- 107
V + L+ P + NAL LV+++ ++ D +V A+VLT F AGAD+ E
Sbjct: 16 VATLTLDSPHNRNALSARLVAQLHDGLRAAAADPAVRAVVLTHTGGTFCAGADLSEAGGG 75
Query: 108 -MLNQTYAANVKTGLLEHWDNITKAKKPVIAAVNGY 142
A + I + KPVIAA++G+
Sbjct: 76 GGDPYDAAVARAREMTALLRAIVELPKPVIAAIDGH 111
>gnl|CDD|235714 PRK06142, PRK06142, enoyl-CoA hydratase; Provisional.
Length = 272
Score = 55.0 bits (133), Expect = 6e-10
Identities = 36/112 (32%), Positives = 49/112 (43%), Gaps = 15/112 (13%)
Query: 45 KVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGAD 104
V +V V LNRP NA+ A SE+ + D D V A+VL+G+ K F+ G D
Sbjct: 9 TVELADHVAQVTLNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSGKHFSYGID 68
Query: 105 IKEMLNQTYAANVKTGL-----------LEHWDNIT---KAKKPVIAAVNGY 142
+ + + K GL L I +KPVIAAV G+
Sbjct: 69 LP-AMAGVFGQLGKDGLARPRTDLRREILRLQAAINAVADCRKPVIAAVQGW 119
>gnl|CDD|200143 TIGR01929, menB, naphthoate synthase (dihydroxynaphthoic acid
synthetase). This model represents an enzyme,
naphthoate synthase (dihydroxynaphthoic acid
synthetase), which is involved in the fifth step of the
menaquinone biosynthesis pathway. Together with
o-succinylbenzoate-CoA ligase (menE: TIGR01923), this
enzyme takes 2-succinylbenzoate and converts it into
1,4-di-hydroxy-2-naphthoate. Included above the trusted
cutoff are two enzymes from Arabadopsis thaliana and one
from Staphylococcus aureus which are identified as
putative enoyl-CoA hydratase/isomerases. These enzymes
group with the naphthoate synthases when building a tree
and when doing BLAST searches [Biosynthesis of
cofactors, prosthetic groups, and carriers, Menaquinone
and ubiquinone].
Length = 259
Score = 54.5 bits (131), Expect = 1e-09
Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 6/110 (5%)
Query: 38 FENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGN-E 96
FE+I +K + + +NRP+ NA V E+ A+ +D + ++LTG +
Sbjct: 1 FEDIRYEK--STDGIAKITINRPQVRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGD 58
Query: 97 KAFAAGAD--IKEMLNQTYAANV-KTGLLEHWDNITKAKKPVIAAVNGYA 143
KAF +G D ++ + V + +L+ I KPVIA VNGYA
Sbjct: 59 KAFCSGGDQKVRGDYGYIDDSGVHRLNVLDVQRQIRTCPKPVIAMVNGYA 108
>gnl|CDD|178269 PLN02664, PLN02664, enoyl-CoA
hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase.
Length = 275
Score = 54.5 bits (131), Expect = 1e-09
Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 15/111 (13%)
Query: 46 VGKNKNVGLVQL--NRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGA 103
+ K+ N + L NRP NAL +E A+ DQ+ +V+ I+L+G F +G
Sbjct: 10 IQKSPNSSVFHLNLNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIILSGAGDHFCSGI 69
Query: 104 DIK---EMLNQTYAANV-KTG---------LLEHWDNITKAKKPVIAAVNG 141
D+K + Q+ + + ++G L + I + +KPVIAA++G
Sbjct: 70 DLKTLNSISEQSSSGDRGRSGERLRRKIKFLQDAITAIEQCRKPVIAAIHG 120
>gnl|CDD|235632 PRK05869, PRK05869, enoyl-CoA hydratase; Validated.
Length = 222
Score = 53.7 bits (129), Expect = 2e-09
Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 3/109 (2%)
Query: 37 KFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNE 96
+F N++V ++ + + L+RP + NAL + E+ AA + + VAA++L G
Sbjct: 3 EFVNVVVSDGSQDAGLATLLLSRPPT-NALTRQVYREIVAAANELGRRDDVAAVILYGGH 61
Query: 97 KAFAAGADIKEM--LNQTYAANVKTGLLEHWDNITKAKKPVIAAVNGYA 143
+ F+AG D+ E+ L+ A + D + KP +AA+ GYA
Sbjct: 62 EIFSAGDDMPELRTLSAQEADTAARVRQQAVDAVAAIPKPTVAAITGYA 110
>gnl|CDD|178509 PLN02921, PLN02921, naphthoate synthase.
Length = 327
Score = 53.3 bits (128), Expect = 3e-09
Identities = 39/114 (34%), Positives = 52/114 (45%), Gaps = 5/114 (4%)
Query: 34 STVKFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLT 93
S +F +I+ +K + + + +NRP+ NA V E+ A DSSV I+LT
Sbjct: 60 SGKEFTDIIYEK-AVGEGIAKITINRPERRNAFRPRTVKELQRAFNDARDDSSVGVIILT 118
Query: 94 GN-EKAFAAGADIKEMLNQTYAANVKTGLLEHWD---NITKAKKPVIAAVNGYA 143
G KAF +G D Y G L D I + KPVIA V GYA
Sbjct: 119 GKGTKAFCSGGDQAVRGKDGYVGPDDAGRLNVLDLQIQIRRLPKPVIAMVAGYA 172
>gnl|CDD|168377 PRK06072, PRK06072, enoyl-CoA hydratase; Provisional.
Length = 248
Score = 52.5 bits (126), Expect = 5e-09
Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 45 KVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGAD 104
KV + +V ++RP LNAL + +E + ++Q + D + +++TG +AF GAD
Sbjct: 3 KVESREGYAIVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGAD 62
Query: 105 IKEMLNQTYAANVKTGLLEHWDNITKAKKPVIAAVNG 141
+ E +A +++ I + K I+A+NG
Sbjct: 63 LSEF-APDFAIDLRETFYPIIREIRFSDKIYISAING 98
>gnl|CDD|131333 TIGR02280, PaaB1, phenylacetate degradation probable enoyl-CoA
hydratase paaB. This family of proteins are found
within apparent operons for the degradation of
phenylacetic acid. These proteins contain the enoyl-CoA
hydratase domain as detected by pfam00378. This activity
is consistent with current hypotheses for the
degradation pathway which involve the ligation of
phenylacetate with coenzyme A (paaF), hydroxylation
(paaGHIJK), ring-opening (paaN) and degradation of the
resulting fatty acid-like compound to a Krebs cycle
intermediate (paaABCDE).
Length = 256
Score = 52.5 bits (126), Expect = 5e-09
Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 8/100 (8%)
Query: 50 KNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEML 109
V + LNRP LN+ + E+ A+++ ++D A++LTG + F AG D+ E
Sbjct: 7 AGVARLTLNRPDKLNSFTAEMHLELREALERVERD-DARALMLTGAGRGFCAGQDLSE-R 64
Query: 110 NQTYAANVKTG-LLEHWDN-----ITKAKKPVIAAVNGYA 143
N T G +E + N + PV+ AVNG A
Sbjct: 65 NPTPGGAPDLGRTIETFYNPLVRRLRALPLPVVCAVNGVA 104
>gnl|CDD|181009 PRK07511, PRK07511, enoyl-CoA hydratase; Provisional.
Length = 260
Score = 52.3 bits (126), Expect = 7e-09
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
Query: 57 LNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEML-NQTYAA 115
L+ P + NAL + + A+ ++D S+ A+VLTG F AG ++ +L N+
Sbjct: 18 LSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTGAGGFFCAGGNLNRLLENRAKPP 77
Query: 116 NV---KTGLLEHW-DNITKAKKPVIAAVNGYA 143
+V L W I KPVIAAV G A
Sbjct: 78 SVQAASIDGLHDWIRAIRAFPKPVIAAVEGAA 109
>gnl|CDD|235705 PRK06127, PRK06127, enoyl-CoA hydratase; Provisional.
Length = 269
Score = 52.0 bits (125), Expect = 9e-09
Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 16/111 (14%)
Query: 41 ILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG-NEKAF 99
+L +K G +G + N P NA+ + + A+ + D ++ +VLTG EKAF
Sbjct: 13 LLAEKTG---GLGRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAF 69
Query: 100 AAGADIKEMLNQ--------TYAANVKTGLLEHWDNITKAKKPVIAAVNGY 142
+GADI + Y V+ + KP IA + GY
Sbjct: 70 VSGADISQFEESRSDAEAVAAYEQAVEAAQAA----LADYAKPTIACIRGY 116
>gnl|CDD|183548 PRK12478, PRK12478, enoyl-CoA hydratase; Provisional.
Length = 298
Score = 51.9 bits (124), Expect = 9e-09
Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 20/125 (16%)
Query: 35 TVKFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG 94
T F+ +L G V + LNRP+ LN + + E+ AA+ ++D + IVL G
Sbjct: 1 TPDFQTLLYTTAGP---VATITLNRPEQLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRG 57
Query: 95 NEKAFAAGADI-------KEMLNQ----------TYAANVKTGLLEHWDNITKAKKPVIA 137
+AF+ G D E + +TG + + I +A KPVIA
Sbjct: 58 AGRAFSGGYDFGGGFQHWGEAMMTDGRWDPGKDFAMVTARETGPTQKFMAIWRASKPVIA 117
Query: 138 AVNGY 142
V+G+
Sbjct: 118 QVHGW 122
>gnl|CDD|181174 PRK07938, PRK07938, enoyl-CoA hydratase; Provisional.
Length = 249
Score = 51.5 bits (124), Expect = 1e-08
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Query: 55 VQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQT-Y 113
V ++ P +NAL A +A A+ D +VL + F AG DIKE+ +
Sbjct: 15 VTVDYPP-VNALPSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAGVDIKELQATPGF 73
Query: 114 AA--NVKTGLLEHWDNITKAKKPVIAAVNGY 142
A + G + + + PVIAAV+G+
Sbjct: 74 TALIDANRGCFAAFRAVYECAVPVIAAVHGF 104
>gnl|CDD|181254 PRK08150, PRK08150, enoyl-CoA hydratase; Provisional.
Length = 255
Score = 50.8 bits (122), Expect = 2e-08
Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Query: 43 VDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAG 102
+ + V + LNRP NAL D L++ + AA V A+VL G F AG
Sbjct: 3 LVSYELDGGVATIGLNRPAKRNALNDGLIAALRAAFA--RLPEGVRAVVLHGEGDHFCAG 60
Query: 103 ADIKEMLNQTYAANVKTGLLEH--WDNITKAKKPVIAAVNG 141
D+ E+ + + H +D I + PVIAA++G
Sbjct: 61 LDLSELRERDAGEGMHHSRRWHRVFDKIQYGRVPVIAALHG 101
>gnl|CDD|132254 TIGR03210, badI, 2-ketocyclohexanecarboxyl-CoA hydrolase. Members
of this protein family are 2-ketocyclohexanecarboxyl-CoA
hydrolase, a ring-opening enzyme that acts in catabolism
of molecules such as benzoyl-CoA and cyclohexane
carboxylate. It converts -ketocyclohexanecarboxyl-CoA to
pimelyl-CoA. It is not sensitive to oxygen.
Length = 256
Score = 50.3 bits (120), Expect = 3e-08
Identities = 35/109 (32%), Positives = 51/109 (46%), Gaps = 7/109 (6%)
Query: 38 FENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG-NE 96
+E+IL +K + + +NRP +NA E+ A++ D + IVL G +
Sbjct: 1 YEDILYEK---RNGIAWIMINRPAKMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGD 57
Query: 97 KAFAAGADIKEMLNQTYAANVKTGL-LEHWDN-ITKAKKPVIAAVNGYA 143
KAF G D + + Y GL +E + I KPVIA V GYA
Sbjct: 58 KAFCTGGD-QSTHDGGYDGRGTIGLPMEELHSAIRDVPKPVIARVQGYA 105
>gnl|CDD|235991 PRK07327, PRK07327, enoyl-CoA hydratase; Provisional.
Length = 268
Score = 50.0 bits (120), Expect = 4e-08
Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 8/98 (8%)
Query: 52 VGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGAD---IKEM 108
V + LN P +LNA + E+A + D+D V +++ G KAF+AG D ++EM
Sbjct: 22 VLEIVLNGPGALNAADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAGGDLALVEEM 81
Query: 109 LNQTYAANVKTGLLEHWD---NITKAKKPVIAAVNGYA 143
+ + + E D N+ KP+++A++G A
Sbjct: 82 ADD-FEVRARV-WREARDLVYNVINCDKPIVSAIHGPA 117
>gnl|CDD|235661 PRK05981, PRK05981, enoyl-CoA hydratase; Provisional.
Length = 266
Score = 49.3 bits (118), Expect = 7e-08
Identities = 27/115 (23%), Positives = 53/115 (46%), Gaps = 12/115 (10%)
Query: 38 FENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQF-DQDSSVAAIVLTGNE 96
F+ + +D G V ++ L+ P+ +NA+ ++ +A A+ D + V +VLTG
Sbjct: 3 FKKVTLDFDG---GVAILTLDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAG 59
Query: 97 KAFAAGADIKEMLNQTYAANVKTG---LLEHWDN-----ITKAKKPVIAAVNGYA 143
+ F GA+++ + ++ LE + + P++ AVNG A
Sbjct: 60 RGFCTGANLQGRGSGGRESDSGGDAGAALETAYHPFLRRLRNLPCPIVTAVNGPA 114
>gnl|CDD|180958 PRK07396, PRK07396, dihydroxynaphthoic acid synthetase; Validated.
Length = 273
Score = 49.1 bits (118), Expect = 9e-08
Identities = 35/111 (31%), Positives = 49/111 (44%), Gaps = 7/111 (6%)
Query: 37 KFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG-N 95
++E+IL + + +NRP+ NA V E+ A D ++ I+LTG
Sbjct: 11 EYEDILYKSADG---IAKITINRPEVRNAFRPKTVKEMIDAFADARDDDNIGVIILTGAG 67
Query: 96 EKAFAAGADIKEMLNQTYAANVKTGLLEHWD---NITKAKKPVIAAVNGYA 143
+KAF +G D K Y + L D I KPVIA V GYA
Sbjct: 68 DKAFCSGGDQKVRGYGGYVDDDGVPRLNVLDLQRLIRTCPKPVIAMVAGYA 118
>gnl|CDD|236220 PRK08290, PRK08290, enoyl-CoA hydratase; Provisional.
Length = 288
Score = 48.8 bits (117), Expect = 1e-07
Identities = 35/131 (26%), Positives = 54/131 (41%), Gaps = 33/131 (25%)
Query: 38 FENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEK 97
+E + + G+ + + LNRP++ NA ++ E+ AA ++ + D +V IVL G K
Sbjct: 3 YEYVRYEVAGR---IARITLNRPEARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAGK 59
Query: 98 AFAAGADIKEMLNQTYAANVKTGLLEH----WDNITKA---------------------- 131
F+AG D+ T + G +H WD TK
Sbjct: 60 HFSAGHDLGS---GTPGRDRDPGPDQHPTLWWDGATKPGVEQRYAREWEVYLGMCRRWRD 116
Query: 132 -KKPVIAAVNG 141
KP IA V G
Sbjct: 117 LPKPTIAQVQG 127
>gnl|CDD|223524 COG0447, MenB, Dihydroxynaphthoic acid synthase [Coenzyme
metabolism].
Length = 282
Score = 48.2 bits (115), Expect = 2e-07
Identities = 37/118 (31%), Positives = 51/118 (43%), Gaps = 9/118 (7%)
Query: 33 MSTVKFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVL 92
+E+I +K + + +NRP+ NA V E+ A D +V I+L
Sbjct: 12 DGFEGYEDITYEK--SVDGIAKITINRPEVRNAFRPKTVDEMIDAFADARDDPNVGVILL 69
Query: 93 TGN---EKAFAAGADIK-EMLNQTYAANVKTGLLEHWD---NITKAKKPVIAAVNGYA 143
TGN +KAF +G D K + Y + L D I KPVIA V GYA
Sbjct: 70 TGNGDGDKAFCSGGDQKVRGDSGGYVDDDGIPRLNVLDLQRLIRTMPKPVIAMVAGYA 127
>gnl|CDD|131494 TIGR02441, fa_ox_alpha_mit, fatty acid oxidation complex, alpha
subunit, mitochondrial. Members represent alpha subunit
of mitochondrial multifunctional fatty acid degradation
enzyme complex. Subunit activities include: enoyl-CoA
hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA
dehydrogenase (EC 1.1.1.35). Some characterization in
human , pig , and rat. The beta subunit has activity:
acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Length = 737
Score = 47.5 bits (113), Expect = 4e-07
Identities = 28/102 (27%), Positives = 56/102 (54%), Gaps = 7/102 (6%)
Query: 46 VGKNKNVGLVQLNRPKS-LNALCDALVSEVAAAVQQFDQDSSV-AAIVLTGNEKAFAAGA 103
+V +V+++ P S +N L L +E + + + ++ +A++++G +F AGA
Sbjct: 17 YEVKGDVAVVKIDSPNSKVNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKPGSFVAGA 76
Query: 104 DIKEMLNQTYAANVKTGL----LEHWDNITKAKKPVIAAVNG 141
DI +M+ A T L E ++ I K++KP++AA++G
Sbjct: 77 DI-QMIAACKTAQEVTQLSQEGQEMFERIEKSQKPIVAAISG 117
>gnl|CDD|183293 PRK11730, fadB, multifunctional fatty acid oxidation complex
subunit alpha; Reviewed.
Length = 715
Score = 46.4 bits (111), Expect = 9e-07
Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 17/103 (16%)
Query: 53 GLVQL--NRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLN 110
G+ +L + P S+N L A ++ + A+ + S + ++LT + AF GADI E L
Sbjct: 16 GIAELVFDAPGSVNKLDRATLASLGEALDALEAQSDLKGLLLTSAKDAFIVGADITEFL- 74
Query: 111 QTYAANVKTGLLEHWDNITKAKK----------PVIAAVNGYA 143
+AA + L W + A P +AA+NGYA
Sbjct: 75 SLFAAPEEE--LSQW--LHFANSIFNRLEDLPVPTVAAINGYA 113
>gnl|CDD|236373 PRK09076, PRK09076, enoyl-CoA hydratase; Provisional.
Length = 258
Score = 44.9 bits (107), Expect = 2e-06
Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 18/102 (17%)
Query: 52 VGLVQLNRP-------KSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGN-EKAFAAGA 103
V ++ LN P SL AL V + + D V A+V+TG+ EK F+AGA
Sbjct: 13 VAILTLNNPPANTWTADSLQAL--------KQLVLELNADKDVYALVITGDGEKFFSAGA 64
Query: 104 DIKEML--NQTYAANVKTGLLEHWDNITKAKKPVIAAVNGYA 143
D+ ++ A + E ++ ++ + IAA+NGYA
Sbjct: 65 DLNLFADGDKAVAREMARRFGEAFEALSAFRGVSIAAINGYA 106
>gnl|CDD|181329 PRK08258, PRK08258, enoyl-CoA hydratase; Provisional.
Length = 277
Score = 45.0 bits (107), Expect = 3e-06
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 10/100 (10%)
Query: 52 VGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQ 111
V + LNRP+ N L +E+ ++ V A+VLTG F +G D+ E++
Sbjct: 27 VATITLNRPERKNPLTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGDVHEIIGP 86
Query: 112 TYAANVKTGLLEHWDNIT----KA----KKPVIAAVNGYA 143
++ LL + +T KA +P+IAAV+G
Sbjct: 87 LTKMDMP-ELLA-FTRMTGDLVKAMRACPQPIIAAVDGVC 124
>gnl|CDD|131490 TIGR02437, FadB, fatty oxidation complex, alpha subunit FadB.
Members represent alpha subunit of multifunctional
enzyme complex of the fatty acid degradation cycle.
Activities include: enoyl-CoA hydratase (EC 4.2.1.17),
dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8),
3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35),
3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A
representative is E. coli FadB. This model excludes the
FadJ family represented by SP:P77399 [Fatty acid and
phospholipid metabolism, Degradation].
Length = 714
Score = 45.2 bits (107), Expect = 3e-06
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 5/98 (5%)
Query: 51 NVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLN 110
+ ++ + P S+N A ++ + A+ SS+ ++LT + AF GADI E L
Sbjct: 16 GIAELKFDAPGSVNKFDRATLASLDQALDAIKAQSSLKGVILTSGKDAFIVGADITEFLG 75
Query: 111 --QTYAANVKTGLLEH---WDNITKAKKPVIAAVNGYA 143
A + LL ++ + P +AA+NG A
Sbjct: 76 LFALPDAELIQWLLFANSIFNKLEDLPVPTVAAINGIA 113
>gnl|CDD|168168 PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydratase; Validated.
Length = 265
Score = 44.0 bits (104), Expect = 5e-06
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 57 LNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQT---Y 113
L+R NA ++ E+ A+ Q D+S+ ++L G + F+AGAD+ M Y
Sbjct: 21 LSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSAGADLAWMQQSADLDY 80
Query: 114 AANVKTG--LLEHWDNITKAKKPVIAAVNGYA 143
N+ L E N+ + K P +A V G A
Sbjct: 81 NTNLDDARELAELMYNLYRLKIPTLAVVQGAA 112
>gnl|CDD|180910 PRK07260, PRK07260, enoyl-CoA hydratase; Provisional.
Length = 255
Score = 43.2 bits (102), Expect = 9e-06
Identities = 29/110 (26%), Positives = 54/110 (49%), Gaps = 9/110 (8%)
Query: 38 FENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEK 97
FE+I+ + ++ + LNRP+ N + E+ A++ ++D SV +++ N K
Sbjct: 1 FEHIIYEVED---DLATLTLNRPEVSNGFNIPMCQEILEALRLAEEDPSVRFLLINANGK 57
Query: 98 AFAAGADIKEMLNQTYAANVK--TGLLEHWDNIT----KAKKPVIAAVNG 141
F+ G D+ EM +V+ + E + I+ + KPVI V+G
Sbjct: 58 VFSVGGDLVEMKRAVDEDDVQSLVKIAELVNEISFAIKQLPKPVIMCVDG 107
>gnl|CDD|178443 PLN02851, PLN02851, 3-hydroxyisobutyryl-CoA hydrolase-like protein.
Length = 407
Score = 43.0 bits (101), Expect = 2e-05
Identities = 20/67 (29%), Positives = 42/67 (62%), Gaps = 3/67 (4%)
Query: 39 ENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKA 98
+ +LV+ G+ K+ + LNRP SLNAL +V+ + + ++++ + +++ G+ +A
Sbjct: 42 DQVLVE--GRAKSRAAI-LNRPSSLNALTIPMVARLKRLYESWEENPDIGFVLMKGSGRA 98
Query: 99 FAAGADI 105
F +GAD+
Sbjct: 99 FCSGADV 105
>gnl|CDD|236864 PRK11154, fadJ, multifunctional fatty acid oxidation complex
subunit alpha; Reviewed.
Length = 708
Score = 43.0 bits (102), Expect = 2e-05
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 7/97 (7%)
Query: 51 NVGLVQLNRP-KSLNALCDALVSEVAAAVQQFDQDSSVAAIVLT-GNEKAFAAGADIKEM 108
N+ ++ ++ P + +N L +V A ++Q +D + +V G F AGADI M
Sbjct: 15 NIAVITIDVPGEKMNTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADIN-M 73
Query: 109 LNQTYAANVKTGLLEH----WDNITKAKKPVIAAVNG 141
L A L + I PV+AA++G
Sbjct: 74 LAACKTAQEAEALARQGQQLFAEIEALPIPVVAAIHG 110
>gnl|CDD|235938 PRK07112, PRK07112, polyketide biosynthesis enoyl-CoA hydratase;
Validated.
Length = 255
Score = 42.4 bits (100), Expect = 2e-05
Identities = 24/103 (23%), Positives = 46/103 (44%), Gaps = 6/103 (5%)
Query: 45 KVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGAD 104
+V + +V +QL+RP++ N + D L++E + + + +++ +VL G + F GAD
Sbjct: 7 RVRQQGDVCFLQLHRPEAQNTINDRLIAECMDVLDRCEHAATI--VVLEGLPEVFCFGAD 64
Query: 105 IKEMLNQTYAANVKTG----LLEHWDNITKAKKPVIAAVNGYA 143
+ + A L + W + IA V G
Sbjct: 65 FSAIAEKPDAGRADLIDAEPLYDLWHRLATGPYVTIAHVRGKV 107
>gnl|CDD|180625 PRK06563, PRK06563, enoyl-CoA hydratase; Provisional.
Length = 255
Score = 41.9 bits (99), Expect = 3e-05
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 7/97 (7%)
Query: 51 NVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLN 110
+V L+ L+RP NA A++ ++A A+ +++ D + VL + + F AG D+ + +
Sbjct: 8 HVLLIGLDRPAKRNAFDSAMLDDLALALGEYEADDELRVAVLFAHGEHFTAGLDLAD-VA 66
Query: 111 QTYAANVKT---GLLEHWDNITKAK--KPVIAAVNGY 142
AA G ++ W + KP++ AV GY
Sbjct: 67 PKLAAGGFPFPEGGIDPWG-TVGRRLSKPLVVAVQGY 102
>gnl|CDD|132244 TIGR03200, dearomat_oah, 6-oxocyclohex-1-ene-1-carbonyl-CoA
hydrolase. Members of this protein family are
6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a
ring-hydrolyzing enzyme in the anaerobic metabolism of
aromatic enzymes by way of benzoyl-CoA, as seen in
Thauera aromatica, Geobacter metallireducens, and
Azoarcus sp. Note that Rhodopseudomonas palustris uses a
different pathway to perform a similar degradation of
benzoyl-CoA to 3-hydroxpimelyl-CoA.
Length = 360
Score = 41.0 bits (96), Expect = 6e-05
Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 8/94 (8%)
Query: 55 VQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG-NEKAFAAGADIKEMLNQTY 113
+ L+ PK N+ +V + A ++ D V A+V T +KAF G + KE + Y
Sbjct: 41 IILDNPKQYNSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYA-EYY 99
Query: 114 AANVKTG------LLEHWDNITKAKKPVIAAVNG 141
A N + + I KPVI VNG
Sbjct: 100 AGNPQEYRQYMRLFNDMVSAILGCDKPVICRVNG 133
>gnl|CDD|177817 PLN02157, PLN02157, 3-hydroxyisobutyryl-CoA hydrolase-like protein.
Length = 401
Score = 40.1 bits (93), Expect = 1e-04
Identities = 16/49 (32%), Positives = 30/49 (61%)
Query: 57 LNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADI 105
LNRP +LNAL + + + +++D ++ +++ G+ +AF AG DI
Sbjct: 52 LNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDI 100
>gnl|CDD|235744 PRK06213, PRK06213, enoyl-CoA hydratase; Provisional.
Length = 229
Score = 39.6 bits (93), Expect = 2e-04
Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 18/101 (17%)
Query: 51 NVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLN 110
V + L+ K +NAL A++ + AA+ Q + D A +V+TG F+ G D+K M +
Sbjct: 12 GVATITLDDGK-VNALSPAMIDALNAALDQAEDDR--AVVVITGQPGIFSGGFDLKVMTS 68
Query: 111 QTYAAN--VKTG------LLEHWDNITKAKKPVIAAVNGYA 143
AA + G LL H KPVI A G+A
Sbjct: 69 GAQAAIALLTAGSTLARRLLSH-------PKPVIVACTGHA 102
>gnl|CDD|235936 PRK07110, PRK07110, polyketide biosynthesis enoyl-CoA hydratase;
Validated.
Length = 249
Score = 39.6 bits (93), Expect = 2e-04
Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 5/94 (5%)
Query: 52 VGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLN- 110
+ V + + NA D L ++ A QD ++LTG FA G + +L+
Sbjct: 15 IAQVTMQDRVNKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGYPNYFATGGTQEGLLSL 74
Query: 111 -QTYAANVKTGLLEHWDNITKAKKPVIAAVNGYA 143
+ L N PVIAA+ G+A
Sbjct: 75 QTGKGTFTEANLYSLALNC---PIPVIAAMQGHA 105
>gnl|CDD|181386 PRK08321, PRK08321, naphthoate synthase; Validated.
Length = 302
Score = 39.6 bits (93), Expect = 2e-04
Identities = 32/116 (27%), Positives = 46/116 (39%), Gaps = 22/116 (18%)
Query: 50 KNVGLVQL--NRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGN---EK----AFA 100
+ G V++ +RP+ NA V E+ A+ V ++LTGN K AF
Sbjct: 31 VDQGTVRIAFDRPEVRNAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFC 90
Query: 101 AGAD--IKEMLNQTYAANVKTG-----------LLEHWDNITKAKKPVIAAVNGYA 143
+G D I+ YA + +LE I K VIA V G+A
Sbjct: 91 SGGDQRIRGRDGYQYAEGDEADTVDPARAGRLHILEVQRLIRFMPKVVIAVVPGWA 146
>gnl|CDD|178210 PLN02600, PLN02600, enoyl-CoA hydratase.
Length = 251
Score = 38.6 bits (90), Expect = 4e-04
Identities = 23/92 (25%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 55 VQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGN-EKAFAAGADIKE--MLNQ 111
++L+RP++ NA+ ++ + +A ++ D+S ++L + F AGAD+KE ++
Sbjct: 8 LRLDRPEAKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMSP 67
Query: 112 TYAANVKTGLLEHWDNITKAKKPVIAAVNGYA 143
+ L + ++ P IA V G A
Sbjct: 68 SEVQKFVNSLRSTFSSLEALSIPTIAVVEGAA 99
>gnl|CDD|131493 TIGR02440, FadJ, fatty oxidation complex, alpha subunit FadJ.
Members represent alpha subunit of multifunctional
enzyme complex of the fatty acid degradation cycle.
Plays a minor role in aerobic beta-oxidation of fatty
acids. FadJI complex is necessary for anaerobic growth
on short-chain acids with nitrate as an electron
acceptor. Activities include: enoyl-CoA hydratase (EC
4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35),
3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A
representative is E. coli FadJ (aka YfcX). This model
excludes the FadB of TIGR02437 equivalog model [Fatty
acid and phospholipid metabolism, Degradation].
Length = 699
Score = 35.6 bits (82), Expect = 0.005
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 7/97 (7%)
Query: 51 NVGLVQLNRP-KSLNALCDALVSEVAAAVQQFDQDSSVAAIVL-TGNEKAFAAGADIKEM 108
+ ++ ++ P + +N L +V+ + Q +D S+ +VL +G F AGADI M
Sbjct: 10 GIAILTIDVPGEKMNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADIS-M 68
Query: 109 LNQTYAANVKTGLLEH----WDNITKAKKPVIAAVNG 141
L A L + + + PV+AA++G
Sbjct: 69 LAACQTAGEAKALAQQGQVLFAELEALPIPVVAAIHG 105
>gnl|CDD|132233 TIGR03189, dienoyl_CoA_hyt, cyclohexa-1,5-dienecarbonyl-CoA
hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA
hydratase, also called dienoyl-CoA hydratase, acts on
the product of benzoyl-CoA reductase (EC 1.3.99.15).
Benzoyl-CoA is a common intermediate in the degradation
of many aromatic compounds, and this enzyme is part of
an anaerobic pathway for dearomatization and
degradation.
Length = 251
Score = 29.9 bits (67), Expect = 0.40
Identities = 26/101 (25%), Positives = 54/101 (53%), Gaps = 8/101 (7%)
Query: 45 KVGKNKNVGLVQLN--RPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAG 102
KV ++ L++L RPK+ N + A+++ ++AA+ + +DS++ A++L F+ G
Sbjct: 2 KVWLERDGKLLRLRLARPKA-NIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFSFG 60
Query: 103 ADIKEMLNQTYAANVKT--GLLEHWDNITKAKKPVIAAVNG 141
A + E + AA + + L+ + + P++ AV G
Sbjct: 61 ASVAEHMPDQCAAMLASLHKLVIA---MLDSPVPILVAVRG 98
>gnl|CDD|177245 MTH00199, ND2, NADH dehydrogenase subunit 2; Provisional.
Length = 460
Score = 28.8 bits (65), Expect = 0.84
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 20 SSIQAAHLYIIKY--MSTVKFENILVDKVGKNKNVGLVQLNRPKSLNALCDALV 71
SIQA+ +Y+I Y MS F IL K+ K V + L+R + AL AL
Sbjct: 296 ESIQASLIYMIIYVIMSICSFSIILSLKLTKGLIVEVSGLSRKNPVIALTLALT 349
>gnl|CDD|133017 cd02526, GT2_RfbF_like, RfbF is a putative dTDP-rhamnosyl
transferase. Shigella flexneri RfbF protein is a
putative dTDP-rhamnosyl transferase. dTDP rhamnosyl
transferases of Shigella flexneri add rhamnose sugars
to N-acetyl-glucosamine in the O-antigen
tetrasaccharide repeat. Lipopolysaccharide O antigens
are important virulence determinants for many bacteria.
The variations of sugar composition, the sequence of
the sugars and the linkages in the O antigen provide
structural diversity of the O antigen.
Length = 237
Score = 28.0 bits (63), Expect = 1.6
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 5/41 (12%)
Query: 49 NKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAA 89
+N+G+ K+LN A + A V FDQDS
Sbjct: 55 GENLGIA-----KALNIGIKAALENGADYVLLFDQDSVPPP 90
>gnl|CDD|225613 COG3071, HemY, Uncharacterized enzyme of heme biosynthesis
[Coenzyme metabolism].
Length = 400
Score = 27.3 bits (61), Expect = 3.5
Identities = 10/35 (28%), Positives = 12/35 (34%)
Query: 109 LNQTYAANVKTGLLEHWDNITKAKKPVIAAVNGYA 143
L Q N GL W N + + V YA
Sbjct: 236 LQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYA 270
>gnl|CDD|233068 TIGR00642, mmCoA_mut_beta, methylmalonyl-CoA mutase, heterodimeric
type, beta chain. The adenosylcobalamin-binding,
catalytic chain of methylmalonyl-CoA mutase may form
homodimers, as in mitochondrion and E. coli, or
heterodimers with a shorter, homologous chain that does
not bind adenosylcobalamin. This model describes this
non-catalytic beta chain, as found in the enzyme from
Propionibacterium freudenreichii, for which the
3-dimensional structure has been solved [Central
intermediary metabolism, Other].
Length = 619
Score = 26.4 bits (58), Expect = 6.4
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 66 LC--DALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFA 100
LC D + ++ V + + + A+ L G K F
Sbjct: 552 LCSSDKVYAQQGLEVAKALKAAGAKALYLAGAFKEFG 588
>gnl|CDD|233377 TIGR01367, pyrE_Therm, orotate phosphoribosyltransferase, Thermus
family. This model represents a distinct clade of
orotate phosphoribosyltransferases. Members include the
experimentally determined example from Thermus
aquaticus and additional examples from Caulobacter
crescentus, Helicobacter pylori, Mesorhizobium loti,
and related species [Purines, pyrimidines, nucleosides,
and nucleotides, Pyrimidine ribonucleotide
biosynthesis].
Length = 187
Score = 25.9 bits (57), Expect = 8.3
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 57 LNRPKSLNALCDALVSEVAAAVQQFD 82
L P++L L L ++ + D
Sbjct: 35 LEHPEALMELGGELAQKILDYGLKVD 60
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.128 0.351
Gapped
Lambda K H
0.267 0.0833 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,856,402
Number of extensions: 592066
Number of successful extensions: 748
Number of sequences better than 10.0: 1
Number of HSP's gapped: 675
Number of HSP's successfully gapped: 100
Length of query: 143
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 56
Effective length of database: 7,078,804
Effective search space: 396413024
Effective search space used: 396413024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.4 bits)