RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9280
(143 letters)
>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC;
2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A*
1dub_A* 1ey3_A* 2hw5_A*
Length = 260
Score = 163 bits (414), Expect = 2e-51
Identities = 65/106 (61%), Positives = 83/106 (78%)
Query: 38 FENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEK 97
F+ I+ +K GKN +VGL+QLNRPK+LNALC+ L+ E+ A++ F++D +V AIVLTG EK
Sbjct: 3 FQYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEK 62
Query: 98 AFAAGADIKEMLNQTYAANVKTGLLEHWDNITKAKKPVIAAVNGYA 143
AFAAGADIKEM N+T+ L HWD+IT+ KKPVIAAVNGYA
Sbjct: 63 AFAAGADIKEMQNRTFQDCYSGKFLSHWDHITRIKKPVIAAVNGYA 108
>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics
center for infectious DI enoyl COA, actinobacteria,
lyase; 1.50A {Mycobacterium smegmatis}
Length = 263
Score = 156 bits (398), Expect = 5e-49
Identities = 49/112 (43%), Positives = 69/112 (61%), Gaps = 2/112 (1%)
Query: 32 YMSTVKFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIV 91
S + I + VGL++L+RP +LNAL L +EV A + FD D + AIV
Sbjct: 2 PGSMTTYTTIATSR--PVAGVGLIRLDRPDALNALNQTLEAEVLDAARDFDADLEIGAIV 59
Query: 92 LTGNEKAFAAGADIKEMLNQTYAANVKTGLLEHWDNITKAKKPVIAAVNGYA 143
+TG+E+AFAAGADI EM+ T + LL WD++T+ +KP++AAV GYA
Sbjct: 60 VTGSERAFAAGADIAEMVTLTPHQARERNLLSGWDSLTQVRKPIVAAVAGYA 111
>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS,
fatty acid metaboli metabolism, lyase, structural
genomics; 1.80A {Mycobacterium tuberculosis} PDB:
3q0j_A* 3pzk_A 3q0g_A*
Length = 278
Score = 154 bits (391), Expect = 9e-48
Identities = 46/110 (41%), Positives = 68/110 (61%), Gaps = 3/110 (2%)
Query: 34 STVKFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLT 93
++ +E ILV++ VG++ LNRP++LNAL +++EV +A + D D + AI++T
Sbjct: 20 GSMTYETILVERDQ---RVGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIIT 76
Query: 94 GNEKAFAAGADIKEMLNQTYAANVKTGLLEHWDNITKAKKPVIAAVNGYA 143
G+ KAFAAGADIKEM + T+A W + + P IAAV GYA
Sbjct: 77 GSAKAFAAGADIKEMADLTFADAFTADFFATWGKLAAVRTPTIAAVAGYA 126
>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics,
NPPSFA, nationa on protein structural and functional
analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A
Length = 258
Score = 153 bits (389), Expect = 1e-47
Identities = 48/111 (43%), Positives = 65/111 (58%), Gaps = 5/111 (4%)
Query: 33 MSTVKFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVL 92
MS +F +I + G VG+++L RP LNAL +V+E+ AAV+ FD++ V IVL
Sbjct: 1 MS--EFVSIAARQEG---AVGIIELARPDVLNALSRQMVAEIVAAVEAFDRNEKVRVIVL 55
Query: 93 TGNEKAFAAGADIKEMLNQTYAANVKTGLLEHWDNITKAKKPVIAAVNGYA 143
TG +AFAAGADI+EM WD ++ K P+IAAVNG A
Sbjct: 56 TGRGRAFAAGADIQEMAKDDPIRLEWLNQFADWDRLSIVKTPMIAAVNGLA 106
>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, otholog; 2.15A {Mycobacterium avium subsp}
Length = 274
Score = 142 bits (361), Expect = 2e-43
Identities = 36/120 (30%), Positives = 55/120 (45%), Gaps = 12/120 (10%)
Query: 33 MSTVKFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVL 92
M F+ I + G + + LNRP +LNAL +++E+ AA + + D V +V+
Sbjct: 5 MPVDSFDTIKYEVDG---HTATITLNRPDALNALSPHMITELRAAYHEAENDDRVWLLVV 61
Query: 93 TGNEKAFAAGADIKEMLNQTYAANVKTGL---------LEHWDNITKAKKPVIAAVNGYA 143
TG +AF +GAD+KE+ + L E KPV+ AVNG
Sbjct: 62 TGTGRAFCSGADVKEIPEDGKVIYERPYLSTYDQWEAPQEGTPPFRTMAKPVLTAVNGIC 121
>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase,
crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens}
PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E*
2vsu_F* 2vsu_E* 2vsu_C*
Length = 276
Score = 142 bits (361), Expect = 2e-43
Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 12/120 (10%)
Query: 33 MSTV--KFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAI 90
MST +++ + V+ + V LNRP+ NA+ L E+ ++ +QD + +
Sbjct: 1 MSTYEGRWKTVKVEIED---GIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVL 57
Query: 91 VLTGNEKAFAAGADIKEMLNQTYAANVKT-------GLLEHWDNITKAKKPVIAAVNGYA 143
VLTG +A+ AG D+KE + A W + KP IA VNG+
Sbjct: 58 VLTGAGEAWTAGMDLKEYFREVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWC 117
>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics,
center for structural genomics of infec diseases, csgid;
HET: FLC PG4; 1.82A {Bacillus anthracis}
Length = 261
Score = 140 bits (356), Expect = 1e-42
Identities = 30/113 (26%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 34 STVKFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLT 93
S + + V ++ + LN NA+ ++ +V + Q ++D ++ +V+
Sbjct: 1 SNAMLKFLSVRVED---HIAVATLNHAP-ANAMSSQVMHDVTELIDQVEKDDNIRVVVIH 56
Query: 94 GNEKAFAAGADIKEMLNQTYAANVKT---GLLEHWDNITKAKKPVIAAVNGYA 143
G + F+AGADIKE + T A ++ + K KPVIAA++G A
Sbjct: 57 GEGRFFSAGADIKEFTSVTEAKQATELAQLGQVTFERVEKCSKPVIAAIHGAA 109
>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural
genomic for structural genomics of infectious diseases,
csgid; HET: MSE; 1.80A {Bacillus anthracis}
Length = 265
Score = 139 bits (353), Expect = 3e-42
Identities = 35/113 (30%), Positives = 60/113 (53%), Gaps = 5/113 (4%)
Query: 34 STVKFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLT 93
+ ++ +NI VD +V + LNR + N+L AL+ E+ + Q +++++ ++LT
Sbjct: 3 AMLQLQNISVDY--ATPHVVKISLNRERQANSLSLALLEELQNILTQINEEANTRVVILT 60
Query: 94 GN-EKAFAAGADIKEMLNQTYAANVKTG--LLEHWDNITKAKKPVIAAVNGYA 143
G EKAF AGAD+KE + + + + +PVIAA+NG A
Sbjct: 61 GAGEKAFCAGADLKERAGMNEEQVRHAVSMIRTTMEMVEQLPQPVIAAINGIA 113
>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.00A {Mycobacterium abscessus}
Length = 265
Score = 139 bits (352), Expect = 5e-42
Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 6/113 (5%)
Query: 34 STVKFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLT 93
S +LV++ G V ++ +NRP NAL +VS+ AAA + D D + A +LT
Sbjct: 4 SMSAARELLVERDG---PVVILTMNRPHRRNALSTNMVSQFAAAWDEIDHDDGIRAAILT 60
Query: 94 GNEKAFAAGADIKEMLNQTYA---ANVKTGLLEHWDNITKAKKPVIAAVNGYA 143
G A+ G D+ + + + KP+IAAVNG
Sbjct: 61 GAGSAYCVGGDLSDGWMVRDGSAPPLDPATIGKGLLLSHTLTKPLIAAVNGAC 113
>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics
center for infectious DI niaid; 1.75A {Mycobacterium
marinum}
Length = 278
Score = 139 bits (352), Expect = 6e-42
Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
Query: 34 STVKFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLT 93
+ + LV++ G + +V +NRP NAL ++ + A + D D + +LT
Sbjct: 15 NGESGPDALVEQRG---HTLIVTMNRPSRRNALSGEMMQIMVEAWDRVDNDPDIRCCILT 71
Query: 94 GNEKAFAAGADIKEMLNQTYAANVK-----TGLLEHWDNITKAKKPVIAAVNGYA 143
G F AG D+K + + K ++ + KKP+IAAV G A
Sbjct: 72 GAGGYFCAGMDLKAATKKPPGDSFKDGSYDPSRIDALLKGRRLKKPLIAAVEGPA 126
>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A
{Mycobacterium abscessus} PDB: 3qka_A
Length = 262
Score = 138 bits (349), Expect = 1e-41
Identities = 37/111 (33%), Positives = 52/111 (46%), Gaps = 3/111 (2%)
Query: 33 MSTVKFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVL 92
MS + V+K G V V LNRP + NA+ + + AA +FD D + VL
Sbjct: 5 MSEEMQPAVRVEKAG---PVTTVILNRPHARNAVDGPTAAALLAAFTEFDADPEASVAVL 61
Query: 93 TGNEKAFAAGADIKEMLNQTYAANVKTGLLEHWDNITKAKKPVIAAVNGYA 143
G+ F AGAD+K M G + + KPVIAA++G+A
Sbjct: 62 WGDNGTFCAGADLKAMGTDRGNELHPHGPGPMGPSRLRLSKPVIAAISGHA 112
>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
tuberculosis; 2.20A {Mycobacterium marinum}
Length = 265
Score = 137 bits (348), Expect = 2e-41
Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 6/111 (5%)
Query: 33 MSTVKFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVL 92
++ +LV++ + ++ +NRPK+ N++ A+ +A A+ + D D+ ++ +L
Sbjct: 9 LNGDTEPEVLVEQRD---RILIITINRPKAKNSVNAAVSRALADAMDRLDADAGLSVGIL 65
Query: 93 TGNEKAFAAGADIKEMLNQTYAANVKTGLLEHWDNITKAKKPVIAAVNGYA 143
TG +F AG D+K GL KP+IAAV GYA
Sbjct: 66 TGAGGSFCAGMDLKAFARGENVVVEGRGL---GFTERPPAKPLIAAVEGYA 113
>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics,
seattle structur genomics center for infectious disease,
ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB:
3p85_A* 3qyr_A
Length = 256
Score = 137 bits (347), Expect = 2e-41
Identities = 35/110 (31%), Positives = 49/110 (44%), Gaps = 10/110 (9%)
Query: 34 STVKFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLT 93
S +LVD V + LNRP+S NAL L S A+ D V +++T
Sbjct: 4 SMADSPVLLVDTTD---RVRTLTLNRPQSRNALSAELRSTFFRALSDAQNDDDVDVVIVT 60
Query: 94 GNEKAFAAGADIKEMLNQTYAANVKTGLLEHWDNITKAKKPVIAAVNGYA 143
G + F AG D+KE+ + T ++ KPVI A+NG A
Sbjct: 61 GADPVFCAGLDLKELGDTTELPDI-------SPKWPDMTKPVIGAINGAA 103
>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; 2.45A {Mycobacterium avium subsp}
Length = 276
Score = 137 bits (348), Expect = 2e-41
Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 7/115 (6%)
Query: 33 MSTVKFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVL 92
M I V G + ++ LNRP SLN++ D L +A Q+ D + A V+
Sbjct: 22 MVYDMPTEIDVRADG---ALRIITLNRPDSLNSVNDDLHVGLARLWQRLTDDPTARAAVI 78
Query: 93 TGNEKAFAAGADIKEMLNQTYAANVKTGLLEHW----DNITKAKKPVIAAVNGYA 143
TG +AF+AG D + + A+++ + + + + PV+AAVNG A
Sbjct: 79 TGAGRAFSAGGDFGYLKELSADADLRAKTIRDGREIVLGMARCRIPVVAAVNGPA 133
>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
tuberculosis, ortholog; 2.25A {Mycobacterium marinum}
Length = 277
Score = 136 bits (346), Expect = 5e-41
Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 6/108 (5%)
Query: 38 FENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEK 97
E + V + + ++RP + NA+ + E+ AA + + + A+VL G +
Sbjct: 23 NEFVSVVADQ---GLATLVVSRPPT-NAMTRQVYREIVAAADELGRRDDIGAVVLFGGHE 78
Query: 98 AFAAGADIKEMLNQTY--AANVKTGLLEHWDNITKAKKPVIAAVNGYA 143
F+AG D+ E+ A LE D + KP +AAV GYA
Sbjct: 79 IFSAGDDMPELRTLNAPEADTAARVRLEAIDAVAAIPKPTVAAVTGYA 126
>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein;
2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB:
2a81_A*
Length = 250
Score = 135 bits (342), Expect = 1e-40
Identities = 28/107 (26%), Positives = 54/107 (50%), Gaps = 7/107 (6%)
Query: 41 ILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGN-EKAF 99
+ + V ++ L+ P N L + V A+ + + D SV A+V+ G E++F
Sbjct: 2 VFEENSD---EVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSF 58
Query: 100 AAGADIKEMLNQTYAANVKT---GLLEHWDNITKAKKPVIAAVNGYA 143
+AG D E+ + + +++ +++ + + KP IAAV+GYA
Sbjct: 59 SAGGDFNEVKQLSRSEDIEEWIDRVIDLYQAVLNVNKPTIAAVDGYA 105
>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics,
protein structure INI NEW YORK structural genomix
research consortium; 2.00A {Rhodopseudomonas palustris}
Length = 275
Score = 135 bits (343), Expect = 1e-40
Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 7/108 (6%)
Query: 38 FENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEK 97
++VD VG V + LNRPK NAL D L++ + + + A+V+ G
Sbjct: 15 PSTLVVDTVG---PVLTIGLNRPKKRNALNDGLMAALKDCLTDIPDQ--IRAVVIHGIGD 69
Query: 98 AFAAGADIKEMLNQTYAANVKTGLLEH--WDNITKAKKPVIAAVNGYA 143
F+AG D+ E+ + + H +D I + PVIAA+ G
Sbjct: 70 HFSAGLDLSELRERDATEGLVHSQTWHRVFDKIQYCRVPVIAALKGAV 117
>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 2.09A {Mycobacterium abscessus}
Length = 256
Score = 134 bits (341), Expect = 2e-40
Identities = 29/105 (27%), Positives = 54/105 (51%), Gaps = 7/105 (6%)
Query: 39 ENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKA 98
+ +L+++ V L+ +NRP + NA+ A+ +AAA Q D + ++ ++TG
Sbjct: 7 DEVLIEQRD---RVLLITINRPDARNAVNRAVSQGLAAAADQLDSSADLSVAIITGAGGN 63
Query: 99 FAAGADIKEMLNQTYAANVKTGLLEHWDNITKAKKPVIAAVNGYA 143
F AG D+K ++ + + + +KP+IAAV G+A
Sbjct: 64 FCAGMDLKAFVSGEAVLSERGLGFTNVP----PRKPIIAAVEGFA 104
>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli}
SCOP: c.14.1.3 PDB: 1ef9_A*
Length = 261
Score = 134 bits (340), Expect = 3e-40
Identities = 25/109 (22%), Positives = 47/109 (43%), Gaps = 7/109 (6%)
Query: 38 FENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG--N 95
++ + V + V +++ N + LNAL + ++ A+ ++ + I+L
Sbjct: 3 YQYVNVVTIN---KVAVIEFNYGRKLNALSKVFIDDLMQALSDLNRP-EIRCIILRAPSG 58
Query: 96 EKAFAAGADIKEMLNQTYAANVKTGLL-EHWDNITKAKKPVIAAVNGYA 143
K F+AG DI E+ + L + I K KP+I+ V G
Sbjct: 59 SKVFSAGHDIHELPSGGRDPLSYDDPLRQITRMIQKFPKPIISMVEGSV 107
>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.10A {Mycobacterium abscessus}
Length = 265
Score = 134 bits (339), Expect = 4e-40
Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 6/109 (5%)
Query: 38 FENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEK 97
+E + + + G V ++ LNRP NA ++ E+A A+ +++ D+ + A VL G
Sbjct: 8 YETLRIRRDG---YVLVIGLNRPAKRNAFDKTMLEELALALGEYETDTDLRAAVLYGEGP 64
Query: 98 AFAAGADIKEM--LNQTYAANVKTGLLEHWDN-ITKAKKPVIAAVNGYA 143
F AG D+ + Q A+ G + W + KP++ AV+G
Sbjct: 65 LFTAGLDLASVAAEIQGGASLTPEGGINPWQVDGRQLSKPLLVAVHGKV 113
>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET:
BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A*
1nzy_B*
Length = 269
Score = 133 bits (336), Expect = 1e-39
Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 10/113 (8%)
Query: 38 FENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEK 97
+E I V + + P+ NAL + EV A+ + ++D SV A+++TG E
Sbjct: 2 YEAIGHRVED---GVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAED 58
Query: 98 AFAAGADIKEMLNQTYAANVKTGLLEH-------WDNITKAKKPVIAAVNGYA 143
AF AG ++E+ A V+ I + K+PV+AA+NG A
Sbjct: 59 AFCAGFYLREIPLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVA 111
>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; 2.85A {Thermus thermophilus} SCOP:
c.14.1.3
Length = 253
Score = 132 bits (335), Expect = 1e-39
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 5/98 (5%)
Query: 51 NVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLN 110
+V +V LN P+ N L + + A+ + D V A+VLTG KAF+AGAD+ +
Sbjct: 8 HVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLER 67
Query: 111 QTYAANVK-----TGLLEHWDNITKAKKPVIAAVNGYA 143
T + L+ + + KP +AAVNG A
Sbjct: 68 VTELGAEENYRHSLSLMRLFHRVYTYPKPTVAAVNGPA 105
>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase,
structural genomics, NPPSFA; 2.16A {Geobacillus
kaustophilus}
Length = 265
Score = 132 bits (335), Expect = 1e-39
Identities = 23/113 (20%), Positives = 44/113 (38%), Gaps = 7/113 (6%)
Query: 34 STVKFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLT 93
K + + V K + + L+ K N+ E AA+ D + +++
Sbjct: 4 VETKKQYLTVFKED---GIAEIHLHINK-SNSYDLEFYKEFNAAIDDIRFDPDIKVVIVM 59
Query: 94 GN-EKAFAAGADIKEM--LNQTYAANVKTGLLEHWDNITKAKKPVIAAVNGYA 143
+ K F+AGADI + + + E D I ++ + IA + G+
Sbjct: 60 SDVPKFFSAGADINFLRSADPRFKTQFCLFCNETLDKIARSPQVYIACLEGHT 112
>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.35A {Mycobacterium abscessus}
Length = 290
Score = 133 bits (337), Expect = 2e-39
Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 11/119 (9%)
Query: 34 STVKFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLT 93
+LVD+ + LV LNRP+ +NA+ ++ + D+ V A+V+T
Sbjct: 18 GPGSMSFVLVDRP--RPEIALVTLNRPERMNAMAFDVMLPFKQMLVDISHDNDVRAVVIT 75
Query: 94 GNEKAFAAGADIKEMLNQTYAANVKTGLLEH---------WDNITKAKKPVIAAVNGYA 143
G K F +GAD K + + + + + +PVIAA+NG A
Sbjct: 76 GAGKGFCSGADQKSAGPIPHIGGLTQPTIALRSMELLDEVILTLRRMHQPVIAAINGAA 134
>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase;
2.04A {Synechocystis SP}
Length = 275
Score = 132 bits (335), Expect = 2e-39
Identities = 32/123 (26%), Positives = 50/123 (40%), Gaps = 12/123 (9%)
Query: 30 IKYMSTVKFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAA 89
+ + +++IL K G + + +NRP NA V E+ A +D+ +
Sbjct: 1 MDWHIAKHYDDILYYKAG---GIAKIVINRPHKRNAFRPQTVFELYDAFCNAREDNRIGV 57
Query: 90 IVLTGN------EKAFAAGADIKEMLNQTYAANVKTGLL---EHWDNITKAKKPVIAAVN 140
++LTG + AF +G D Y + T L + I K VIA V
Sbjct: 58 VLLTGAGPHSDGKYAFCSGGDQSVRGEGGYIDDQGTPRLNVLDLQRLIRSMPKVVIALVA 117
Query: 141 GYA 143
GYA
Sbjct: 118 GYA 120
>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding
protein,enoyl-COA hydratase, riken structural
genomics/proteomics initiative, RSGI; 2.20A {Homo
sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A
Length = 272
Score = 132 bits (335), Expect = 2e-39
Identities = 26/108 (24%), Positives = 47/108 (43%), Gaps = 3/108 (2%)
Query: 39 ENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGN-EK 97
E + +N+ + ++ +NR N+L L+ ++ AV D V I++
Sbjct: 9 ELRVRHLEEENRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPG 68
Query: 98 AFAAGADIKEMLNQTY--AANVKTGLLEHWDNITKAKKPVIAAVNGYA 143
F AGAD+KE + + + ++I P IAA++G A
Sbjct: 69 IFCAGADLKERAKMSSSEVGPFVSKIRAVINDIANLPVPTIAAIDGLA 116
>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown
function, PSI-2, protein struct initiative; 1.80A
{Streptomyces avermitilis}
Length = 287
Score = 132 bits (334), Expect = 4e-39
Identities = 19/119 (15%), Positives = 39/119 (32%), Gaps = 12/119 (10%)
Query: 33 MSTVKFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVL 92
+ + + V V + L+ P +N + ++ E+ + DSSV IV
Sbjct: 3 LRNDAYSTLRVSSEH---GVARIILDNPP-VNVIGATMMRELRTVLTTLADDSSVRVIVF 58
Query: 93 TG-NEKAFAAGADIKEMLNQTYAANVKTG-------LLEHWDNITKAKKPVIAAVNGYA 143
+ + + F A D++ + + I + I + G A
Sbjct: 59 SSADPEFFLAHVDMRIGEKMDALQELAASAPADVNVFQAVGELIRHQPQVTIVKLAGKA 117
>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural
genomics, PSI-2, protein structure initiative; HET: MSE;
2.40A {Pseudomonas aeruginosa}
Length = 258
Score = 130 bits (330), Expect = 9e-39
Identities = 26/116 (22%), Positives = 55/116 (47%), Gaps = 8/116 (6%)
Query: 33 MSTVK--FENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAI 90
MS + ++ G ++ L+ L+R NA A+++++A A+ ++++
Sbjct: 4 MSEANSGPGRVTREQRG---HLFLIGLDRAGKRNAFDSAMLADLALAMGEYERSEESRCA 60
Query: 91 VLTGNEKAFAAGADIKEMLNQTYAA--NVKTGLLEHWDNI-TKAKKPVIAAVNGYA 143
VL + + F AG D+ E+ + A+ G ++ W + + KP++ AV G
Sbjct: 61 VLFAHGEHFTAGLDLMELAPKLAASGFRYPDGGVDPWGVVQPRRSKPLVVAVQGTC 116
>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase,
PSI-2, protein structure initiative; 1.50A {Streptomyces
avermitilis}
Length = 289
Score = 131 bits (332), Expect = 9e-39
Identities = 21/118 (17%), Positives = 43/118 (36%), Gaps = 11/118 (9%)
Query: 33 MS-TVKFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIV 91
MS T +E I G V N P +N + +V ++ A +++ ++ ++
Sbjct: 1 MSLTASYETIKARLDG---TVLSATFNAPP-MNLIGPEVVRDLVALLEELAHPTAPRVVI 56
Query: 92 LTG-NEKAFAAGADIKEMLNQTYAANVKTGLL-----EHWDNITKAKKPVIAAVNGYA 143
+ F D+ ++ T A G + +++ IA + G A
Sbjct: 57 FDSADADFFFPHVDMTKVPEYTAEAAKAGGPGDASLGMLFRKLSQLPAVTIAKLRGRA 114
>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious
DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium
avium subsp} PDB: 3r9s_A 3r0o_A
Length = 267
Score = 130 bits (330), Expect = 1e-38
Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 7/113 (6%)
Query: 33 MSTVKFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVL 92
M+ L ++ G NV ++ +NRP++ NA+ A+ V A+++ D V A+VL
Sbjct: 5 MTD--APGALAERRG---NVMVITINRPEARNAINAAVSIGVGDALEEAQHDPEVRAVVL 59
Query: 93 TGN-EKAFAAGADIKEMLNQTYAANVKTGLLEHWDNITKA-KKPVIAAVNGYA 143
TG +K+F AGAD+K + + + + KP IAAVNG A
Sbjct: 60 TGAGDKSFCAGADLKAIARRENLYHPDHPEWGFAGYVRHFIDKPTIAAVNGTA 112
>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily,
lyase; 1.95A {Escherichia coli} PDB: 3t88_A 3h02_A
2iex_A
Length = 289
Score = 130 bits (330), Expect = 1e-38
Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 7/111 (6%)
Query: 38 FENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGN-E 96
FE+I +K + + +NRP+ NA V E+ A+ D ++ I+LTG +
Sbjct: 26 FEDIRYEK--STDGIAKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGD 83
Query: 97 KAFAAGADIKEMLNQTY----AANVKTGLLEHWDNITKAKKPVIAAVNGYA 143
KAF +G D K + + +L+ I KPV+A V GY+
Sbjct: 84 KAFCSGGDQKVRGDYGGYKDDSGVHHLNVLDFQRQIRTCPKPVVAMVAGYS 134
>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, structu genomics; 2.20A {Mycobacterium
marinum}
Length = 256
Score = 129 bits (326), Expect = 3e-38
Identities = 34/109 (31%), Positives = 51/109 (46%), Gaps = 6/109 (5%)
Query: 38 FENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEK 97
+ +D + V + LNRP++LNA +AL A A+ D VA ++LTG+ +
Sbjct: 5 MVTLQIDDDNR---VRTLTLNRPEALNAFNEALYDATAQALLDAADDPQVAVVLLTGSGR 61
Query: 98 AFAAGADIKEMLNQTYAANVKTGLLEH---WDNITKAKKPVIAAVNGYA 143
F+AG D+ EM + N G + KP+I AVNG
Sbjct: 62 GFSAGTDLAEMQARITDPNFSEGKFGFRGLIKALAGFPKPLICAVNGLG 110
>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A
2q2x_A
Length = 243
Score = 128 bits (324), Expect = 4e-38
Identities = 21/104 (20%), Positives = 43/104 (41%), Gaps = 3/104 (2%)
Query: 40 NILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAF 99
N +V V + + S N ++V + Q+ ++LTG F
Sbjct: 1 NAVVQLTELGNGVVQITMKDESSRNGFSPSIVEGLRHCFSVVAQNQQYKVVILTGYGNYF 60
Query: 100 AAGADIKEMLNQTYAANVKTGLLEHWDNITKAKKPVIAAVNGYA 143
++GA + ++ +T +L+ I + P+IAA+ G++
Sbjct: 61 SSGASKEFLIRKTRGE---VEVLDLSGLILDCEIPIIAAMQGHS 101
>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty
acid metabolism, transit peptide, lipid Met crontonase,
mitochondrion, CAsp; 2.3A {Homo sapiens}
Length = 287
Score = 129 bits (326), Expect = 6e-38
Identities = 21/113 (18%), Positives = 43/113 (38%), Gaps = 6/113 (5%)
Query: 34 STVKFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLT 93
+ ++ + + L+ PK N L A++ + + + + + I+++
Sbjct: 28 RESEPRPTSARQLD---GIRNIVLSNPKKRNTLSLAMLKSLQSDILHDADSNDLKVIIIS 84
Query: 94 GNEKAFAAGADIKEMLNQTYAANVKTGLLEHWD---NITKAKKPVIAAVNGYA 143
F++G D+KE+ + +I PVIA VNG A
Sbjct: 85 AEGPVFSSGHDLKELTEEQGRDYHAEVFQTCSKVMMHIRNHPVPVIAMVNGLA 137
>3t3w_A Probable enoyl-COA hydratase; ssgcid, structural genomics, seattle
ST genomics center for infectious disease, lyase; 1.80A
{Mycobacterium thermoresistibile} PDB: 3ome_A
Length = 279
Score = 128 bits (323), Expect = 1e-37
Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 10/113 (8%)
Query: 38 FENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEK 97
I D + + + LNRP++ NA L+ E+ AA + +D+ V+ IVL N K
Sbjct: 19 EMYIDYDVSDR---IATITLNRPEAANAQNPELLDELDAAWTRAAEDNDVSVIVLRANGK 75
Query: 98 AFAAGADIKEMLNQTYAANVKTGL-------LEHWDNITKAKKPVIAAVNGYA 143
F+AG D++ ++ LE+ KP IAAV G
Sbjct: 76 HFSAGHDLRGGGPVPDKLTLEFIYAHESRRYLEYSLRWRNVPKPSIAAVQGRC 128
>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA;
2.9A {Staphylococcus aureus}
Length = 273
Score = 127 bits (322), Expect = 2e-37
Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 7/118 (5%)
Query: 30 IKYMSTVKFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAA 89
++ + +++ I + + V +NRP+ NA V+E+ A + D +V+
Sbjct: 4 RQWETLREYDEIKYEFYE---GIAKVTINRPEVRNAFTPKTVAEMIDAFSRARDDQNVSV 60
Query: 90 IVLTGN-EKAFAAGADIKEMLNQTYAANVKTGLL---EHWDNITKAKKPVIAAVNGYA 143
IVLTG + AF +G D K+ + Y + L + I KPVIA V GYA
Sbjct: 61 IVLTGEGDLAFCSGGDQKKRGHGGYVGEDQIPRLNVLDLQRLIRIIPKPVIAMVKGYA 118
>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP:
c.14.1.3 PDB: 2vre_A
Length = 275
Score = 127 bits (322), Expect = 2e-37
Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 15/119 (12%)
Query: 38 FENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEK 97
+E+I V K+V VQLNRP+ NA+ A E+ Q+ +DS A+V++G K
Sbjct: 2 YESIQVTSA--QKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGK 59
Query: 98 AFAAGADIKEMLNQT-------------YAANVKTGLLEHWDNITKAKKPVIAAVNGYA 143
F +G D+ +M + Y ++ + + + I K KPVIAA++G
Sbjct: 60 MFTSGIDLMDMASDILQPPGDDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGC 118
>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism,
lyase, structural genomics; HET: PGE; 2.30A
{Mycobacterium tuberculosis}
Length = 264
Score = 125 bits (317), Expect = 7e-37
Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 7/118 (5%)
Query: 26 HLYIIKYMSTVKFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDS 85
H+ ++ + I + + V ++L RP+ NAL LV E+ A+++ D
Sbjct: 8 HMGTLEAQTQGPGSMIGITQAE---AVLTIELQRPERRNALNSQLVEELTQAIRKAG-DG 63
Query: 86 SVAAIVLTGNEKAFAAGADIKEMLNQTYAANVKTGLLEHWDNITKAKKPVIAAVNGYA 143
S AIVLTG AF AGAD+ +AA+ L+E + + PV+ A+NG A
Sbjct: 64 SARAIVLTGQGTAFCAGADLSGD---AFAADYPDRLIELHKAMDASPMPVVGAINGPA 118
>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2,
protein structure initiative, EN hydratase; 1.76A
{Bordetella parapertussis}
Length = 254
Score = 125 bits (316), Expect = 8e-37
Identities = 21/113 (18%), Positives = 41/113 (36%), Gaps = 6/113 (5%)
Query: 33 MSTVKFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVL 92
MS + +++ L+RP+ NAL LV + V ++ V +V
Sbjct: 1 MSLSASLPLAIERRPA---AWTFTLSRPEKRNALSAELVEALIDGVDAAHREQ-VPLLVF 56
Query: 93 TGNEKAFAAGADIKEMLNQTYAANVKTGLLEH--WDNITKAKKPVIAAVNGYA 143
G + F+AG D + Q+ + + + + +A +G
Sbjct: 57 AGAGRNFSAGFDFTDYETQSEGDLLLRMVRIEMLLQRVAGSPSLTLALAHGRN 109
>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2;
2.00A {Acinetobacter baumannii}
Length = 266
Score = 125 bits (316), Expect = 1e-36
Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 9/115 (7%)
Query: 33 MSTVKFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVL 92
MS ++ + G V + +NRP++ NAL L +A A+ + DQ+ V +VL
Sbjct: 1 MSL--HPHLNANLEG---GVLTLAINRPEAKNALYGELYLWIAKALDEADQNKDVRVVVL 55
Query: 93 TGNEKAFAAGADIKEMLNQTYAANVKTGLLEH----WDNITKAKKPVIAAVNGYA 143
G E F AG D+K+ + N + + KP+I AV G A
Sbjct: 56 RGAEHDFTAGNDMKDFMGFVQNPNAGPAGQVPPFVLLKSAARLSKPLIIAVKGVA 110
>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET:
CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A
Length = 260
Score = 124 bits (314), Expect = 2e-36
Identities = 23/109 (21%), Positives = 53/109 (48%), Gaps = 5/109 (4%)
Query: 38 FENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTG-NE 96
+ +LV+ V +++ P +N+L ++E+ ++++ + D S ++LT
Sbjct: 2 SQRVLVEPDAGA-GVAVMKFKNPP-VNSLSLEFLTELVISLEKLENDKSFRGVILTSDRP 59
Query: 97 KAFAAGADIKEMLNQTY--AANVKTGLLEHWDNITKAKKPVIAAVNGYA 143
F+AG D+ EM ++ A + E W + ++ +++A+NG
Sbjct: 60 GVFSAGLDLTEMCGRSPAHYAGYWKAVQELWLRLYQSNLVLVSAINGAC 108
>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A
{Streptomyces toyocaensis} PDB: 2pg8_A*
Length = 440
Score = 128 bits (322), Expect = 3e-36
Identities = 26/137 (18%), Positives = 52/137 (37%), Gaps = 30/137 (21%)
Query: 34 STVKFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLT 93
V+ E + +++ V + + R LNA V ++ AV D V +L
Sbjct: 162 GEVEMEAVHLERRD---GVARLTMCRDDRLNAEDGQQVDDMETAVDLALLDPGVRVGLLR 218
Query: 94 GN---------EKAFAAGADIKEM------------------LNQTYAANVKTGLLEHWD 126
G ++ F+AG ++K + +++ + W
Sbjct: 219 GGVMSHPRYRGKRVFSAGINLKYLSQGGISLVDFLMRRELGYIHKLVRGVLTNDDRPGWW 278
Query: 127 NITKAKKPVIAAVNGYA 143
+ + +KP +AAV+G+A
Sbjct: 279 HSPRIEKPWVAAVDGFA 295
>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase,
lyase, crotonase, biocatalysis, beta-diketone; 1.46A
{Anabaena SP} PDB: 2j5s_A* 2j5g_D
Length = 263
Score = 123 bits (312), Expect = 4e-36
Identities = 25/110 (22%), Positives = 42/110 (38%), Gaps = 5/110 (4%)
Query: 37 KFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNE 96
K+EN+ + + V+++ S E A +D ++LTG+
Sbjct: 21 KYENLHFHRDENG--ILEVRMHTNGSSLVFTGKTHREFPDAFYDISRDRDNRVVILTGSG 78
Query: 97 KAFAAGADIKEMLNQTYAANVKTGLLEH---WDNITKAKKPVIAAVNGYA 143
A+ A D + + T E N+ + PVI+AVNG A
Sbjct: 79 DAWMAEIDFPSLGDVTNPREWDKTYWEGKKVLQNLLDIEVPVISAVNGAA 128
>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural
genomics center for infectious lyase; 1.55A
{Mycobacterium smegmatis}
Length = 286
Score = 122 bits (309), Expect = 2e-35
Identities = 36/108 (33%), Positives = 55/108 (50%), Gaps = 4/108 (3%)
Query: 39 ENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKA 98
E +L+ + V + LNRP++ NAL +A+++ + A +D SV A+VL + KA
Sbjct: 24 EPLLLQDRDER-GVVTLTLNRPQAFNALSEAMLAALGEAFGTLAEDESVRAVVLAASGKA 82
Query: 99 FAAGADIKEMLNQTYAANVKTGLLEHWDN---ITKAKKPVIAAVNGYA 143
F AG D+KEM + + D I + PVIA V+G A
Sbjct: 83 FCAGHDLKEMRAEPSREYYEKLFARCTDVMLAIQRLPAPVIARVHGIA 130
>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038,
NPPSFA, national project on prote structural and
functional analyses; 2.00A {Geobacillus kaustophilus}
Length = 257
Score = 121 bits (306), Expect = 3e-35
Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 4/107 (3%)
Query: 38 FENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEK 97
+E I + G V + LNRP LNA + + +EV A++Q D +V +V+TG +
Sbjct: 2 YETIRYEVKG---QVAWLTLNRPDQLNAFTEQMNAEVTKALKQAGADPNVRCVVITGAGR 58
Query: 98 AFAAGADIKEMLNQTYAAN-VKTGLLEHWDNITKAKKPVIAAVNGYA 143
AF AG D+ + + + +++ + +KPV+AAVNG A
Sbjct: 59 AFCAGEDLSGVTEEMDHGDVLRSRYAPMMKALHHLEKPVVAAVNGAA 105
>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics,
structural genomics consortium, SGC, unknown function;
1.90A {Homo sapiens} PDB: 2fw2_A
Length = 261
Score = 121 bits (306), Expect = 3e-35
Identities = 23/113 (20%), Positives = 48/113 (42%), Gaps = 9/113 (7%)
Query: 37 KFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNE 96
++ +I+V K ++ ++ + N+L ++ EV +A+ D S ++L+
Sbjct: 3 RYRDIVVRK--QDGFTHILLSTKSSENNSLNPEVMREVQSALSTAAADDSK-LVLLSAVG 59
Query: 97 KAFAAGADIKEMLNQT------YAANVKTGLLEHWDNITKAKKPVIAAVNGYA 143
F G D + + + + + + + KKP+I AVNG A
Sbjct: 60 SVFCCGLDFIYFIRRLTDDRKRESTKMAEAIRNFVNTFIQFKKPIIVAVNGPA 112
>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus}
Length = 265
Score = 121 bits (306), Expect = 4e-35
Identities = 32/106 (30%), Positives = 47/106 (44%), Gaps = 4/106 (3%)
Query: 39 ENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKA 98
+ + V ++ L+ P + N+ L ++ AA Q+ D D +V IVLTG A
Sbjct: 7 TELHEEIRD---GVAVLTLHGPSTRNSFTVELGRQLGAAYQRLDDDPAVRVIVLTGAPPA 63
Query: 99 FAAGADIKEMLNQTYAA-NVKTGLLEHWDNITKAKKPVIAAVNGYA 143
F +GA I A N + + PVIAAVNG+A
Sbjct: 64 FCSGAQISAAAETFAAPRNPDFSASPVQPAAFELRTPVIAAVNGHA 109
>2fbm_A Y chromosome chromodomain protein 1, telomeric IS;
acetyltransferase, structural genomics, structural
genomics consortium, SGC, unknown function; 2.28A {Homo
sapiens} SCOP: c.14.1.3
Length = 291
Score = 121 bits (306), Expect = 5e-35
Identities = 22/124 (17%), Positives = 46/124 (37%), Gaps = 9/124 (7%)
Query: 26 HLYIIKYMSTVKFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDS 85
H + + + +I+V K ++ +V R NAL ++ E+ A+ D
Sbjct: 10 HSSGLVPRGSSTYRDIVVKK--EDGFTQIVLSTRSTEKNALNTEVIKEIVNALNSAAAD- 66
Query: 86 SVAAIVLTGNEKAFAAGADIKEMLNQT------YAANVKTGLLEHWDNITKAKKPVIAAV 139
++ + F G D + + + + + + KKP++ +V
Sbjct: 67 DSKLVLFSAAGSVFCCGLDFGYFVKHLRNNRNTASLEMVDTIKNFVNTFIQFKKPIVVSV 126
Query: 140 NGYA 143
NG A
Sbjct: 127 NGPA 130
>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A
{Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A
Length = 257
Score = 120 bits (302), Expect = 1e-34
Identities = 26/109 (23%), Positives = 40/109 (36%), Gaps = 5/109 (4%)
Query: 37 KFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNE 96
K+ENI +++ G V LV ++ E+A D ++LTG
Sbjct: 14 KYENIRLERDGG---VLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGTG 70
Query: 97 KAFAAGADIKEMLNQTYAANVKTGLLEH--WDNITKAKKPVIAAVNGYA 143
+F D T + +N+ + PVIAAVNG
Sbjct: 71 PSFCNEIDFTSFNLGTPHDWDEIIFEGQRLLNNLLSIEVPVIAAVNGPV 119
>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics;
1.58A {Legionella pneumophila subsp}
Length = 268
Score = 119 bits (300), Expect = 3e-34
Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 11/116 (9%)
Query: 33 MSTVKFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVL 92
MS ++L + VGL+ +NR NA + L++E+ + D++V IVL
Sbjct: 1 MS---LSDLLYEIQD---KVGLLTMNRISKHNAFDNQLLTEMRIRLDSAINDTNVRVIVL 54
Query: 93 TGNEKAFAAGADIKEM---LNQTYAANVKTG--LLEHWDNITKAKKPVIAAVNGYA 143
N K F+AGAD+ M N T N++ L +I+++ KP IA V G A
Sbjct: 55 KANGKHFSAGADLTWMQSMANFTEEENLEDSLVLGNLMYSISQSPKPTIAMVQGAA 110
>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, structu genomics; 1.60A {Mycobacterium
marinum M} PDB: 3q1t_A
Length = 272
Score = 117 bits (295), Expect = 2e-33
Identities = 22/115 (19%), Positives = 49/115 (42%), Gaps = 7/115 (6%)
Query: 33 MSTVKFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVL 92
++ F ++ + V + L+ P LN++ + ++A D+D V +++
Sbjct: 7 LTYQDFPSLRFEP--GEHGVLNLVLDSPG-LNSVGPQMHRDLADVWPVIDRDPDVRVVLV 63
Query: 93 TGNEKAFAAGADIKEMLNQTYAANVKTGLLEH----WDNITKAKKPVIAAVNGYA 143
G KAF++G + + + ++ N+ KPV++A+ G A
Sbjct: 64 RGEGKAFSSGGSFELIDETIGDYEGRIRIMREARDLVLNLVNLDKPVVSAIRGPA 118
>3lke_A Enoyl-COA hydratase; nysgrc, target 11251J, structural genomics,
PSI-2, protein structure initiative; 1.70A {Bacillus
halodurans}
Length = 263
Score = 113 bits (286), Expect = 3e-32
Identities = 24/118 (20%), Positives = 50/118 (42%), Gaps = 13/118 (11%)
Query: 33 MSTVKFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVL 92
MS + + + + L+ P+ N L L + + A++ + ++S+ +I+L
Sbjct: 1 MS---LSYVHTEIQN---DALYITLDYPEKKNGLDAELGTSLLEAIRAGNNETSIHSIIL 54
Query: 93 TGNEKA-FAAGADIKEMLNQT------YAANVKTGLLEHWDNITKAKKPVIAAVNGYA 143
+A F++G ++++L V L I + K +A +NGYA
Sbjct: 55 QSKHRAYFSSGPRLEDLLICASDQSDVRLREVLHVLNHCVLEIFTSPKVTVALINGYA 112
>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH;
polyketide synthase, enoyl COA hydratase,isomerase;
2.32A {Bacillus subtilis}
Length = 267
Score = 113 bits (284), Expect = 6e-32
Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 8/115 (6%)
Query: 33 MSTVKFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVL 92
MS V ++ I V +V + +RP++ N + D L+ E + Q + + V +VL
Sbjct: 1 MSLVTYQTIKVRFQA---SVCYITFHRPEANNTINDTLIEECLQVLNQCETST-VTVVVL 56
Query: 93 TGNEKAFAAGADIKEMLNQT----YAANVKTGLLEHWDNITKAKKPVIAAVNGYA 143
G + F GAD +E+ + A+ + L + W + I+ V G
Sbjct: 57 EGLPEVFCFGADFQEIYQEMKRGRKQASSQEPLYDLWMKLQTGPYVTISHVRGKV 111
>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics,
PSI-2, protein structure initiative; 2.50A {Pseudomonas
syringae PV}
Length = 232
Score = 111 bits (280), Expect = 1e-31
Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 7/106 (6%)
Query: 39 ENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKA 98
+ + V + LN K +NA+ ++ AA+ Q ++D A +++TG
Sbjct: 6 DLVSYHLDD---GVATLTLNNGK-VNAISPDVIIAFNAALDQAEKD--RAIVIVTGQPGI 59
Query: 99 FAAGADIKEMLNQTYAA-NVKTGLLEHWDNITKAKKPVIAAVNGYA 143
+ G D+K M + AA N+ + P+I A G+A
Sbjct: 60 LSGGYDLKVMTSSAEAAINLVAQGSTLARRMLSHPFPIIVACPGHA 105
>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura
genomics, seattle structural genomics center for
infectious lyase; 1.75A {Mycobacterium marinum M}
Length = 233
Score = 111 bits (279), Expect = 2e-31
Identities = 27/113 (23%), Positives = 52/113 (46%), Gaps = 11/113 (9%)
Query: 33 MSTVKFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVL 92
MS + +G+++++ K +N L + + A+ D+D+ V A+V+
Sbjct: 3 MS----GPVTYTHDD---AIGVIRMDDGK-VNVLGPTMQQALNEAIDAADRDN-VGALVI 53
Query: 93 TGNEKAFAAGADIKEMLNQTY--AANVKTGLLEHWDNITKAKKPVIAAVNGYA 143
GN + F+ G D+K + + A ++ G E + KPV+ A G+A
Sbjct: 54 AGNHRVFSGGFDLKVLTSGEAKPAIDMLRGGFELSYRLLSYPKPVVIACTGHA 106
>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center
for infectious disease, S coenzyme A, tuberculosis;
2.05A {Mycobacterium avium}
Length = 255
Score = 108 bits (273), Expect = 2e-30
Identities = 33/106 (31%), Positives = 52/106 (49%), Gaps = 7/106 (6%)
Query: 38 FENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEK 97
I V+ G V ++L+RP+ LNA+ ++ E++ ++ + D SV A++LTG +
Sbjct: 5 MNGISVEHDG---AVLRIRLDRPEKLNAVDTPMLEELSVHIRDAEADESVRAVLLTGAGR 61
Query: 98 AFAAGADIKEMLNQTYAANVKTGLLEHWDNITKAKKPVIAAVNGYA 143
AF +G D+ A IT KPVIA V+G A
Sbjct: 62 AFCSGGDLTGGDTAGAA----DAANRVVRAITSLPKPVIAGVHGAA 103
>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural
genomics, riken S genomics/proteomics initiative, RSGI;
1.80A {Thermus thermophilus} SCOP: c.14.1.3
Length = 264
Score = 108 bits (273), Expect = 3e-30
Identities = 21/111 (18%), Positives = 38/111 (34%), Gaps = 7/111 (6%)
Query: 37 KFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNE 96
++ + V + R + LNA+ AL +A + + V A++L G
Sbjct: 8 RYPGLAFAW--PRPGVLEITF-RGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEG 64
Query: 97 KAFAAGADIKEMLNQTYAANVKTGLLEHW----DNITKAKKPVIAAVNGYA 143
F+AG + + + +PV+AAV A
Sbjct: 65 GVFSAGGSFGLIEEMRASHEALLRVFWEARDLVLGPLNFPRPVVAAVEKVA 115
>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily,
lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A
1rjm_A* 1rjn_A* 1q52_A 1q51_A
Length = 334
Score = 109 bits (275), Expect = 5e-30
Identities = 30/126 (23%), Positives = 43/126 (34%), Gaps = 21/126 (16%)
Query: 38 FENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGN-- 95
+I + + V NRP+ NA V E+ + V ++LTGN
Sbjct: 54 LTDITYHRHVDD-ATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGP 112
Query: 96 -----EKAFAAGADIKEMLNQTY-------------AANVKTGLLEHWDNITKAKKPVIA 137
AF +G D + Y A + +LE I K VI
Sbjct: 113 SPKDGGWAFCSGGDQRIRGRSGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVIC 172
Query: 138 AVNGYA 143
VNG+A
Sbjct: 173 LVNGWA 178
>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M}
Length = 298
Score = 108 bits (272), Expect = 6e-30
Identities = 29/116 (25%), Positives = 45/116 (38%), Gaps = 12/116 (10%)
Query: 38 FENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEK 97
+ +L + V ++ NR LNA L + AA+ + + D + IVLTG +
Sbjct: 28 QDAVLYEAT--PGGVAIITFNRADRLNAWGPDLAAGFYAAIDRAEADPGIRVIVLTGRGR 85
Query: 98 AFAAGADIKEMLNQTYAANVKTGLLEH----------WDNITKAKKPVIAAVNGYA 143
F AGA + + +T +KPVIAA+NG
Sbjct: 86 GFCAGAYLGSADAAAGYDKTMAKAKDANLADLVGERPPHFVTMLRKPVIAAINGPC 141
>3gow_A PAAG, probable enoyl-COA hydratase; the spiral fold, the crotonase
superfamily, lyase; 1.85A {Thermus thermophilus HB8}
PDB: 3hrx_A
Length = 254
Score = 106 bits (267), Expect = 2e-29
Identities = 31/104 (29%), Positives = 58/104 (55%), Gaps = 4/104 (3%)
Query: 41 ILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFA 100
+L ++ V ++ LNRP+ LNA+ L+ + AA+++ ++D V A++LTG +AF+
Sbjct: 2 VLKERQD---GVLVLTLNRPEKLNAITGELLDALYAALKEGEEDREVRALLLTGAGRAFS 58
Query: 101 AGADIKEMLNQTYAANVKTGLLEH-WDNITKAKKPVIAAVNGYA 143
AG D+ E ++ + ++ +KP++ AVNG A
Sbjct: 59 AGQDLTEFGDRKPDYEAHLRRYNRVVEALSGLEKPLVVAVNGVA 102
>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural
genomics, PSI-2, protein ST initiative; 2.05A
{Streptomyces coelicolor A3}
Length = 279
Score = 106 bits (268), Expect = 2e-29
Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 9/117 (7%)
Query: 33 MSTVKFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVL 92
T ++ ++ V+ V V L RP LNAL +++ + + + +V A+VL
Sbjct: 11 APTPEWRHLRVEITD---GVATVTLARPDKLNALTFEAYADLRDLLAELSRRRAVRALVL 67
Query: 93 TGNEKAFAAGADIKEMLNQTYAANVKTG--LLEHWDNITKA----KKPVIAAVNGYA 143
G + F +G D+ E++ T + + + +A PVIAA++G A
Sbjct: 68 AGEGRGFCSGGDVDEIIGATLSMDTARLLDFNRMTGQVVRAVRECPFPVIAALHGVA 124
>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold,
inter-trimer contacts; 2.10A {Saccharomyces cerevisiae}
SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A
Length = 280
Score = 104 bits (261), Expect = 2e-28
Identities = 24/119 (20%), Positives = 44/119 (36%), Gaps = 16/119 (13%)
Query: 38 FENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEK 97
E I G ++ L P +LNAL + ++ D++ V ++ + +
Sbjct: 8 NEKISYRIEGP---FFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGR 64
Query: 98 AFAAGADIKEMLNQT-------------YAANVKTGLLEHWDNITKAKKPVIAAVNGYA 143
F++GAD K + + +N + D K K +I +NG A
Sbjct: 65 FFSSGADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPA 123
>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving,
burkholderia xenovorans LB400 crotonase; 1.50A
{Burkholderia xenovorans}
Length = 556
Score = 107 bits (269), Expect = 2e-28
Identities = 21/125 (16%), Positives = 49/125 (39%), Gaps = 21/125 (16%)
Query: 37 KFENILVDKVGKNKNVGLVQLNRPK----------SLNALCDALVSEVAAAVQQ--FDQD 84
++++ + G V + ++ + LN+ + E+ A+Q+ F+
Sbjct: 19 QYKHWKLSFNG---PVATLGIDIAEDGGIRDGYKLKLNSYDLGVDIELHDAIQRIRFEHP 75
Query: 85 SSVAAIVLTGNEKAFAAGADIKEMLNQTYAANVKTGLLEH------WDNITKAKKPVIAA 138
++ + ++ F +GA+I + T+A V + D+ + +AA
Sbjct: 76 EVRTVVLTSLKDRVFCSGANIFMLGLSTHAWKVNFCKFTNETRNGLEDSSRHSGLKFLAA 135
Query: 139 VNGYA 143
VNG
Sbjct: 136 VNGAC 140
>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase
superfamily, dimer of trimers, PSI-2, NYSGXRC,
structural genomics; 2.32A {Ruegeria pomeroyi}
Length = 263
Score = 103 bits (260), Expect = 2e-28
Identities = 26/119 (21%), Positives = 52/119 (43%), Gaps = 12/119 (10%)
Query: 33 MSTVKFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVL 92
MS + +L + + ++ V + L R + + L A+++ + A+++ D V +V+
Sbjct: 1 MSL-SQDGLLGEVL--SEGVLTLTLGRAPA-HPLSRAMIAALHDALRRAMGDDHVHVLVI 56
Query: 93 TGNEKAFAAGADIKEMLNQT--------YAANVKTGLLEHWDNITKAKKPVIAAVNGYA 143
G + F AG D+KE+ + ++ ++ KP IA V G A
Sbjct: 57 HGPGRIFCAGHDLKEIGRHRADPDEGRAFVTDLFEACSALMLDLAHCPKPTIALVEGIA 115
>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas
campestris PV} PDB: 3m6m_A
Length = 305
Score = 102 bits (257), Expect = 1e-27
Identities = 21/151 (13%), Positives = 45/151 (29%), Gaps = 19/151 (12%)
Query: 11 TSKHLFNNGSSIQAAHLYIIKYMSTVKFENILVDKVGKNKNVGLVQLNRPKSLN----AL 66
S H ++ S + + ++ T + + ++V + ++ ++N
Sbjct: 2 GSSHHHHHHSQDPNSMSAVQPFIRTNIGSTLRII-EEPQRDVYWIHMHADLAINPGRACF 60
Query: 67 CDALVSEVAAAVQQFDQ-----DSSVAAIVLTGNEKAFAAGADIKEMLNQTYAANVKTGL 121
LV ++ Q +VL + F G D+ + L
Sbjct: 61 STRLVDDITGYQTNLGQRLNTAGVLAPHVVLASDSDVFNLGGDLALFCQLIREGDRARLL 120
Query: 122 ---------LEHWDNITKAKKPVIAAVNGYA 143
+ + A+ IA V G A
Sbjct: 121 DYAQRCVRGVHAFHVGLGARAHSIALVQGNA 151
>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid
metabolism, STR genomics, structural genomics
consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3
Length = 280
Score = 100 bits (250), Expect = 8e-27
Identities = 33/119 (27%), Positives = 51/119 (42%), Gaps = 13/119 (10%)
Query: 31 KYMSTVKFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAI 90
+ M FE ++V + + NRPK NA+ + E+ A++ +D S+
Sbjct: 21 QSMG---FETLVVTSED---GITKIMFNRPKKKNAINTEMYHEIMRALKAASKDDSI-IT 73
Query: 91 VLTGNEKAFAAGADIKEMLNQT------YAANVKTGLLEHWDNITKAKKPVIAAVNGYA 143
VLTGN +++G D+ + A N L E KP+IA VNG A
Sbjct: 74 VLTGNGDYYSSGNDLTNFTDIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPA 132
>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu
genomics, seattle structural genomics center for
infectious lyase; 1.75A {Mycobacterium smegmatis} PDB:
3njb_A
Length = 333
Score = 100 bits (251), Expect = 1e-26
Identities = 23/143 (16%), Positives = 51/143 (35%), Gaps = 35/143 (24%)
Query: 33 MSTVKFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVL 92
+ + + + + V + NRP+ NA+ E++A V++ D D V I++
Sbjct: 29 VDFDNLKTMTYEVTDR---VARITFNRPEKGNAIVADTPLELSALVERADLDPDVHVILV 85
Query: 93 TGNEKAFAAGADIKEMLNQTYAA--------------------------------NVKTG 120
+G + F AG D+ + +A + +
Sbjct: 86 SGRGEGFCAGFDLSAYAEGSSSAGGGSPYEGTVLSGKTQALNHLPDEPWDPMVDYQMMSR 145
Query: 121 LLEHWDNITKAKKPVIAAVNGYA 143
+ + ++ KP + ++GY
Sbjct: 146 FVRGFASLMHCDKPTVVKIHGYC 168
>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for
infectious disease, S non-pathogenic mycobacterium
species, ortholog; 1.50A {Mycobacterium avium}
Length = 267
Score = 96.5 bits (241), Expect = 1e-25
Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 10/118 (8%)
Query: 33 MSTVKFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVL 92
M + G V + LN P + NAL ALVS++ ++ D +V +VL
Sbjct: 5 MDALVDYAGPAATGG---PVARLTLNSPHNRNALSTALVSQLHQGLRDASSDPAVRVVVL 61
Query: 93 TGNEKAFAAGADIKEMLNQTYAANVKTGLLEHWDN-------ITKAKKPVIAAVNGYA 143
F AGAD+ E + ++ +E I +++ PVIAA++G+
Sbjct: 62 AHTGGTFCAGADLSEAGSGGSPSSAYDMAVERAREMAALMRAIVESRLPVIAAIDGHV 119
>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway,
oxidoreductase, lipid metabolism, LY isomerase,
peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A
{Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A*
2x58_A*
Length = 742
Score = 79.6 bits (197), Expect = 1e-18
Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 5/93 (5%)
Query: 51 NVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLN 110
++ +++L P +NA+ ++ EV +Q+ D +V AIV+ G F AGADI
Sbjct: 30 SLAMIRLCNP-PVNAVSPTVIREVRNGLQKAGSDHTVKAIVICGANGNFCAGADIHGFSA 88
Query: 111 QTYAANVKTGLLEHWDNITKAKKPVIAAVNGYA 143
T + + + D I + +KPV+AA+ G A
Sbjct: 89 FTPGLALGSLV----DEIQRYQKPVLAAIQGVA 117
>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric
complex, lyase, oxidoreductase/transferase complex,
lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP:
a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A*
1wdm_A* 2d3t_A*
Length = 715
Score = 77.3 bits (191), Expect = 1e-17
Identities = 24/99 (24%), Positives = 44/99 (44%), Gaps = 6/99 (6%)
Query: 51 NVGLVQLNRP-KSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEM- 108
+ ++ + +S+N ++E+ AV D+SV ++++ + F GADI E
Sbjct: 16 GIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSSGKDVFIVGADITEFV 75
Query: 109 -LNQTYAANVKTGLLEHW---DNITKAKKPVIAAVNGYA 143
+ A + G LE + P +AA+NG A
Sbjct: 76 ENFKLPDAELIAGNLEANKIFSDFEDLNVPTVAAINGIA 114
>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase,
peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A
{Arabidopsis thaliana}
Length = 725
Score = 76.9 bits (190), Expect = 1e-17
Identities = 26/116 (22%), Positives = 50/116 (43%), Gaps = 8/116 (6%)
Query: 33 MSTVKFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVL 92
M + +++ G V ++ L P +N+L ++ + + ++ + V AIV+
Sbjct: 1 MDSRTKGKTVMEVGGDG--VAVITLINP-PVNSLSFDVLYNLKSNYEEALSRNDVKAIVI 57
Query: 93 TGNEKAFAAGADIKEML-----NQTYAANVKTGLLEHWDNITKAKKPVIAAVNGYA 143
TG + F+ G DI N + D + A+KP +AA++G A
Sbjct: 58 TGAKGRFSGGFDISGFGEMQKGNVKEPKAGYISIDIITDLLEAARKPSVAAIDGLA 113
>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure,
structural genomics, PSI-2, protein ST initiative; HET:
MSE; 2.30A {Shewanella oneidensis}
Length = 407
Score = 75.9 bits (187), Expect = 3e-17
Identities = 36/146 (24%), Positives = 68/146 (46%), Gaps = 20/146 (13%)
Query: 17 NNGSSIQAAHLYIIKYMSTVKF--------ENILVDKVG--KNKNVGLVQLNRPKSLNAL 66
++ S +LY +M+ + +N++ + K VG+V LN K+LNAL
Sbjct: 7 HHHHSSGRENLYFQGHMTNLVDKAAHSFATQNVVFQTLATASGKLVGVVTLNVEKALNAL 66
Query: 67 CDALVSEVAAAVQQFDQDSSVAAIVLTGN-EKAFAAGADIKEMLNQTYAANVKTGLL--- 122
+V + + + +D +A +VL G+ EKAF AG D++ + + + AA + +
Sbjct: 67 DLDMVRAMTVQLNLWKKDPLIACVVLDGSGEKAFCAGGDVRALYHASVAAKGQVTEVAKV 126
Query: 123 ----EHWDN--ITKAKKPVIAAVNGY 142
E+ + + KPV+ +G
Sbjct: 127 FFEEEYRLDYLLHTYGKPVLVWGDGI 152
>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A,
beta-hydroxyisobutyryl acid, querceti structural
genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens}
Length = 363
Score = 74.3 bits (183), Expect = 9e-17
Identities = 34/117 (29%), Positives = 61/117 (52%), Gaps = 12/117 (10%)
Query: 33 MSTVKFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVL 92
M+ E +L+ K G G++ LNRPK LNAL ++ ++ +++++QD I++
Sbjct: 1 MTDAA-EEVLLGKKG---CTGVITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFLIII 56
Query: 93 TGN-EKAFAAGADIKEMLNQTYAANVKTGL----LEHWDN--ITKAKKPVIAAVNGY 142
G KAF AG DI+ ++++ A K E+ N + +KP +A ++G
Sbjct: 57 KGAGGKAFCAGGDIR-VISEAEKAKQKIAPVFFREEYMLNNAVGSCQKPYVALIHGI 112
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.0 bits (85), Expect = 0.001
Identities = 20/88 (22%), Positives = 30/88 (34%), Gaps = 11/88 (12%)
Query: 53 GLVQLNRPKSLNALCDALVSEVAAAVQQ--FDQDSSVAAIVLTGNEKAFAAGADIKEMLN 110
G + P + L + V++ V+ Q V + LT E + G DI
Sbjct: 47 GFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI----- 101
Query: 111 QTYAANVKTGLLEHWDNITKAKKPVIAA 138
AA LL+ D K +I
Sbjct: 102 HALAAK----LLQENDTTLVKTKELIKN 125
Score = 33.9 bits (77), Expect = 0.015
Identities = 26/172 (15%), Positives = 46/172 (26%), Gaps = 78/172 (45%)
Query: 10 QTSKHLFNNGSSIQAAHLYIIKYMSTVKFENILVDKVGKNKNV--GLVQLNRPKSLNALC 67
+T+ HL + I S V N G V G P+SL L
Sbjct: 355 KTNSHLPAGK------QVEI----SLV---N------GAKNLVVSGP-----PQSLYGLN 390
Query: 68 DAL---------------VSE-----------VAA---------AVQQFDQDSSVAAIVL 92
L SE VA+ A ++D +
Sbjct: 391 LTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSF 450
Query: 93 TGNEKAF-----AAGADIKEMLNQTYAANVKTGLLE-------HWDNITKAK 132
+ G+D+ + + ++ +++ W+ T+ K
Sbjct: 451 NAKDIQIPVYDTFDGSDL-----RVLSGSISERIVDCIIRLPVKWETTTQFK 497
Score = 31.9 bits (72), Expect = 0.063
Identities = 22/138 (15%), Positives = 43/138 (31%), Gaps = 41/138 (29%)
Query: 7 SAL----------QTSKHLFNNGSSIQAAHLYIIKYMSTVKFENILVDKVGKNKNVGLVQ 56
+AL + +F G ++Q A + D++G+ N G++
Sbjct: 1768 AALASLADVMSIESLVEVVFYRGMTMQVA---------------VPRDELGR-SNYGMIA 1811
Query: 57 LNRPKSLNA-LCDALVSEVAAAVQQFDQDSSV-AA--------IVLTGNEKAFAAGADIK 106
+N P + A + V V + V V G+ +A +
Sbjct: 1812 IN-PGRVAASFSQEALQYVVERVGK-RTGWLVEIVNYNVENQQYVAAGDLRALDT---VT 1866
Query: 107 EMLNQTYAANVKTGLLEH 124
+LN + L+
Sbjct: 1867 NVLNFIKLQKIDIIELQK 1884
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.0 bits (69), Expect = 0.15
Identities = 8/85 (9%), Positives = 23/85 (27%), Gaps = 20/85 (23%)
Query: 1 MNKIFISALQTSKHLFNNGSSIQAAHLYIIKY----MSTVK-------FENILVD----- 44
+++ + K ++ Y + + ++ F + +D
Sbjct: 445 LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE 504
Query: 45 -KVGKNKNVGLVQLNRPKSLNALCD 68
K+ ++ LN L
Sbjct: 505 QKI---RHDSTAWNASGSILNTLQQ 526
>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane,
transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A
Length = 593
Score = 27.2 bits (60), Expect = 2.0
Identities = 10/73 (13%), Positives = 23/73 (31%), Gaps = 13/73 (17%)
Query: 71 VSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQTYAANVKTGLLEHWDNITK 130
+ ++ ++Q D ++ IV+ A ++ +
Sbjct: 72 LFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKAL-------------KEFRD 118
Query: 131 AKKPVIAAVNGYA 143
+ KPV A Y+
Sbjct: 119 SGKPVYAVGENYS 131
>1w25_A Stalked-cell differentiation controlling protein; two-component
system, ggdef domain, cyclic dinucleotide, cyclic-digmp;
HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1
c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Length = 459
Score = 27.1 bits (60), Expect = 2.1
Identities = 4/38 (10%), Positives = 12/38 (31%), Gaps = 6/38 (15%)
Query: 73 EVAAAVQQFDQDSSVAAIVLTGN------EKAFAAGAD 104
V ++ + +++T + +GA
Sbjct: 62 TVCRKLKDDPTTRHIPVVLITALDGRGDRIQGLESGAS 99
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural
genomics, PSI, protein struct initiative; 2.30A
{Brucella melitensis}
Length = 295
Score = 26.3 bits (59), Expect = 3.8
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 9/49 (18%)
Query: 60 PKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEK----AFAAGAD 104
PK + L D+ EV A +++ D V VL N K A AA AD
Sbjct: 51 PKWVPQLADS--REVMAGIRRAD---GVRYSVLVPNMKGYEAAAAAHAD 94
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP
domain, MIF4G domain, RNA maturation, RNA export,
nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP:
a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A
3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Length = 771
Score = 26.3 bits (57), Expect = 4.2
Identities = 9/77 (11%), Positives = 29/77 (37%), Gaps = 6/77 (7%)
Query: 52 VGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLNQ 111
G+++ + P + + L A ++ + +V N + + G + E + +
Sbjct: 35 AGVLEADLPNYKSKILRLLC---TVARLLPEKLTIYTTLVGLLNARNYNFGGEFVEAMIR 91
Query: 112 TYAANVKTGLLEHWDNI 128
++K +++
Sbjct: 92 QLKESLKAN---NYNEA 105
>1hp1_A 5'-nucleotidase; metallophosphatase, dinuclear, metalloenzyme,
hydrolase, domain movement; HET: ATP; 1.70A {Escherichia
coli} SCOP: d.114.1.1 d.159.1.2 PDB: 1ush_A 2ush_A
1hpu_A* 1ho5_A* 1oi8_A 1oid_A 1oie_A
Length = 516
Score = 26.2 bits (58), Expect = 4.8
Identities = 7/43 (16%), Positives = 15/43 (34%), Gaps = 3/43 (6%)
Query: 102 GADIKEMLNQTYAANVKTGLLEHWDNIT---KAKKPVIAAVNG 141
G ++ + L +G + N++ K K + G
Sbjct: 406 GKEVIDYLTAVAQMKPDSGAYPQFANVSFVAKDGKLNDLKIKG 448
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 25.3 bits (54), Expect = 6.4
Identities = 7/24 (29%), Positives = 12/24 (50%), Gaps = 4/24 (16%)
Query: 6 ISALQTSKHLFNNGS----SIQAA 25
+ LQ S L+ + S +I+A
Sbjct: 22 LKKLQASLKLYADDSAPALAIKAT 45
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion;
HET: ATP; 2.20A {Thermus thermophilus}
Length = 377
Score = 25.6 bits (56), Expect = 6.7
Identities = 6/35 (17%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 63 LNALCDALVSEVAAAVQQF---DQDSSVAAIVLTG 94
+ + L E+ +++ F +++S L G
Sbjct: 280 IRPVLVELTQELRRSLEFFRIQLEEASPEVGYLLG 314
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate
hydrogen bond, nucleotide binding fold, thior reductase,
thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium}
SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A
1zyp_A
Length = 521
Score = 25.3 bits (56), Expect = 10.0
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 24 AAHLYIIKYMSTVKFENILVDKVGKNKNV 52
H+ ++++ +K + +L DKV KNV
Sbjct: 378 VEHVTLLEFAPEMKADQVLQDKVRSLKNV 406
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.128 0.351
Gapped
Lambda K H
0.267 0.0799 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,021,643
Number of extensions: 107909
Number of successful extensions: 448
Number of sequences better than 10.0: 1
Number of HSP's gapped: 341
Number of HSP's successfully gapped: 91
Length of query: 143
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 59
Effective length of database: 4,356,429
Effective search space: 257029311
Effective search space used: 257029311
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (23.7 bits)