RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9280
(143 letters)
>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 260
Score = 96.4 bits (239), Expect = 6e-26
Identities = 65/106 (61%), Positives = 83/106 (78%)
Query: 38 FENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEK 97
F+ I+ +K GKN +VGL+QLNRPK+LNALC+ L+ E+ A++ F++D +V AIVLTG EK
Sbjct: 3 FQYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEK 62
Query: 98 AFAAGADIKEMLNQTYAANVKTGLLEHWDNITKAKKPVIAAVNGYA 143
AFAAGADIKEM N+T+ L HWD+IT+ KKPVIAAVNGYA
Sbjct: 63 AFAAGADIKEMQNRTFQDCYSGKFLSHWDHITRIKKPVIAAVNGYA 108
>d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase
(delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 275
Score = 75.9 bits (185), Expect = 5e-18
Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 15/119 (12%)
Query: 38 FENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEK 97
+E+I V K+V VQLNRP+ NA+ A E+ Q+ +DS A+V++G K
Sbjct: 2 YESIQVTSA--QKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGK 59
Query: 98 AFAAGADIKEMLNQT-------------YAANVKTGLLEHWDNITKAKKPVIAAVNGYA 143
F +G D+ +M + Y ++ + + + I K KPVIAA++G
Sbjct: 60 MFTSGIDLMDMASDILQPPGDDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGC 118
>d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 297
Score = 74.0 bits (180), Expect = 3e-17
Identities = 25/126 (19%), Positives = 36/126 (28%), Gaps = 21/126 (16%)
Query: 38 FENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEK 97
+I + + V NRP+ NA V E+ + V ++LTGN
Sbjct: 17 LTDITYHRHVDD-ATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGP 75
Query: 98 AFAAGADIKEMLNQTYAANVKT--------------------GLLEHWDNITKAKKPVIA 137
+ G +LE I K VI
Sbjct: 76 SPKDGGWAFCSGGDQRIRGRSGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVIC 135
Query: 138 AVNGYA 143
VNG+A
Sbjct: 136 LVNGWA 141
>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus
thermophilus [TaxId: 274]}
Length = 253
Score = 68.6 bits (166), Expect = 2e-15
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 5/98 (5%)
Query: 51 NVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKEMLN 110
+V +V LN P+ N L + + A+ + D V A+VLTG KAF+AGAD+ +
Sbjct: 8 HVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLER 67
Query: 111 QTYAANVKTG-----LLEHWDNITKAKKPVIAAVNGYA 143
T + L+ + + KP +AAVNG A
Sbjct: 68 VTELGAEENYRHSLSLMRLFHRVYTYPKPTVAAVNGPA 105
>d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase
(delta3-delta2-enoyl-CoA isomerase) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 266
Score = 60.1 bits (144), Expect = 2e-12
Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Query: 37 KFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNE 96
+ E I G ++ L P +LNAL + ++ D++ V ++ +
Sbjct: 3 QNEKISYRIEG---PFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSG 59
Query: 97 KAFAAGADIKEMLN 110
+ F++GAD K +
Sbjct: 60 RFFSSGADFKGIAK 73
>d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas
sp., strain CBS-3 [TaxId: 306]}
Length = 269
Score = 57.9 bits (138), Expect = 2e-11
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 38 FENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEK 97
+E I V + + P+ NAL + EV A+ + ++D SV A+++TG E
Sbjct: 2 YEAIGHRVED---GVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAED 58
Query: 98 AFAAGADIKEM 108
AF AG ++E+
Sbjct: 59 AFCAGFYLREI 69
>d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA
isomerase {Human (Homo sapiens) [TaxId: 9606]}
Length = 245
Score = 56.7 bits (135), Expect = 4e-11
Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 10/111 (9%)
Query: 38 FENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEK 97
FE ++V + + NRPK NA+ + E+ A++ +D S+ ++ TGN
Sbjct: 2 FETLVVTS---EDGITKIMFNRPKKKNAINTEMYHEIMRALKAASKDDSIITVL-TGNGD 57
Query: 98 AFAAGADIKEMLNQTYA------ANVKTGLLEHWDNITKAKKPVIAAVNGY 142
+++G D+ + N L E KP+IA VNG
Sbjct: 58 YYSSGNDLTNFTDIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLIAVVNGP 108
>d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus
erythropolis [TaxId: 1833]}
Length = 249
Score = 52.4 bits (124), Expect = 1e-09
Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 3/54 (5%)
Query: 37 KFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAI 90
K+ENI +++ G V LV ++ E+A D +
Sbjct: 11 KYENIRLERDG---GVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVV 61
>d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit,
N-terminal domain {Pseudomonas fragi [TaxId: 296]}
Length = 310
Score = 52.0 bits (123), Expect = 2e-09
Identities = 16/79 (20%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 37 KFENILVDKVGKNKNVGLVQLN-RPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGN 95
+ + I V + + ++ + + +S+N ++E+ AV D+SV ++++
Sbjct: 4 EGKAITVTALESG--IVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSSG 61
Query: 96 EKAFAAGADIKEMLNQTYA 114
+ F GADI E +
Sbjct: 62 KDVFIVGADITEFVENFKL 80
>d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase
{Escherichia coli [TaxId: 562]}
Length = 261
Score = 51.4 bits (121), Expect = 3e-09
Identities = 11/60 (18%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
Query: 33 MSTVKFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVL 92
MS ++ + V + V +++ N + LNAL + ++ A+ ++ I+
Sbjct: 1 MS---YQYVNVVTIN---KVAVIEFNYGRKLNALSKVFIDDLMQALSDLNRPEIRCIILR 54
>d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human
(Homo sapiens) [TaxId: 9606]}
Length = 258
Score = 50.3 bits (118), Expect = 8e-09
Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 38 FENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIV 91
+ +I+V K ++ +V R NAL ++ E+ A+ D S +
Sbjct: 1 YRDIVVKK--EDGFTQIVLSTRSTEKNALNTEVIKEMVNALNSAAADDSKLVLF 52
>d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218
{Thermus thermophilus [TaxId: 274]}
Length = 263
Score = 49.5 bits (116), Expect = 2e-08
Identities = 15/78 (19%), Positives = 32/78 (41%), Gaps = 5/78 (6%)
Query: 33 MSTV--KFENILVDKVGKNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAI 90
++++ ++ + V + R + LNA+ AL +A + + V A+
Sbjct: 1 LASLEARYPGLAFAWPRPG--VLEITF-RGEKLNAMPPALHRGLARVWRDLEAVEGVRAV 57
Query: 91 VLTGNEKAFAAGADIKEM 108
+L G F+AG +
Sbjct: 58 LLRGEGGVFSAGGSFGLI 75
>d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId:
9606]}
Length = 266
Score = 48.2 bits (113), Expect = 4e-08
Identities = 11/66 (16%), Positives = 25/66 (37%)
Query: 48 KNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSVAAIVLTGNEKAFAAGADIKE 107
+N+ + ++ +NR N+L L+ ++ AV D V I++ +
Sbjct: 12 ENRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLK 71
Query: 108 MLNQTY 113
+
Sbjct: 72 ERAKMS 77
>d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB
{Pectobacterium carotovorum [TaxId: 554]}
Length = 230
Score = 44.1 bits (102), Expect = 1e-06
Identities = 10/40 (25%), Positives = 18/40 (45%)
Query: 48 KNKNVGLVQLNRPKSLNALCDALVSEVAAAVQQFDQDSSV 87
+ V ++ L+ P N L + V A+ + + D SV
Sbjct: 6 NSDEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSV 45
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.128 0.351
Gapped
Lambda K H
0.267 0.0422 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 463,955
Number of extensions: 17471
Number of successful extensions: 49
Number of sequences better than 10.0: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 16
Length of query: 143
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 66
Effective length of database: 1,350,386
Effective search space: 89125476
Effective search space used: 89125476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)