Query psy9281
Match_columns 152
No_of_seqs 133 out of 1450
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 23:28:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9281.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9281hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1680|consensus 100.0 4E-34 8.8E-39 218.7 10.1 143 4-150 90-253 (290)
2 PRK08150 enoyl-CoA hydratase; 100.0 7.7E-33 1.7E-37 214.4 13.0 140 6-149 55-217 (255)
3 PRK09076 enoyl-CoA hydratase; 100.0 1.1E-32 2.5E-37 213.7 13.1 140 5-148 57-219 (258)
4 PRK06143 enoyl-CoA hydratase; 100.0 1.4E-32 3.1E-37 213.0 12.8 140 5-149 62-224 (256)
5 PLN02600 enoyl-CoA hydratase 100.0 1.5E-32 3.4E-37 212.2 12.5 141 5-149 50-213 (251)
6 PRK05862 enoyl-CoA hydratase; 100.0 1.7E-32 3.7E-37 212.6 12.7 141 5-149 58-219 (257)
7 PRK06494 enoyl-CoA hydratase; 100.0 1.8E-32 3.9E-37 212.7 12.7 140 6-149 60-219 (259)
8 PRK08252 enoyl-CoA hydratase; 100.0 1.9E-32 4.1E-37 212.0 12.8 140 5-148 57-215 (254)
9 PRK05980 enoyl-CoA hydratase; 100.0 1.4E-32 3E-37 213.4 12.0 116 34-149 110-225 (260)
10 PRK05869 enoyl-CoA hydratase; 100.0 4.2E-32 9.1E-37 206.5 13.6 138 5-146 61-221 (222)
11 PRK06190 enoyl-CoA hydratase; 100.0 3.1E-32 6.6E-37 211.4 13.0 141 5-149 58-219 (258)
12 PRK07657 enoyl-CoA hydratase; 100.0 2.5E-32 5.4E-37 211.9 12.4 140 6-149 60-222 (260)
13 PRK05809 3-hydroxybutyryl-CoA 100.0 3E-32 6.5E-37 211.5 12.7 141 5-149 59-222 (260)
14 PRK06563 enoyl-CoA hydratase; 100.0 2.6E-32 5.7E-37 211.3 12.2 115 34-148 102-216 (255)
15 PRK09674 enoyl-CoA hydratase-i 100.0 3.3E-32 7.2E-37 210.8 12.7 141 5-149 56-217 (255)
16 PRK03580 carnitinyl-CoA dehydr 100.0 3.5E-32 7.6E-37 211.3 12.8 139 6-148 58-218 (261)
17 PRK07658 enoyl-CoA hydratase; 100.0 3.1E-32 6.7E-37 211.0 12.1 116 34-149 104-219 (257)
18 TIGR02280 PaaB1 phenylacetate 100.0 4E-32 8.7E-37 210.4 12.6 116 34-149 103-218 (256)
19 PRK09120 p-hydroxycinnamoyl Co 100.0 3.4E-32 7.3E-37 212.9 12.2 116 34-149 114-229 (275)
20 PRK08138 enoyl-CoA hydratase; 100.0 4.7E-32 1E-36 210.6 12.9 141 5-149 62-223 (261)
21 PRK06144 enoyl-CoA hydratase; 100.0 5.1E-32 1.1E-36 210.5 12.6 139 5-147 63-226 (262)
22 PRK06127 enoyl-CoA hydratase; 100.0 5E-32 1.1E-36 211.3 12.5 116 34-149 116-231 (269)
23 TIGR03210 badI 2-ketocyclohexa 100.0 6.5E-32 1.4E-36 209.3 13.1 137 5-145 57-215 (256)
24 PRK08259 enoyl-CoA hydratase; 100.0 6.4E-32 1.4E-36 209.1 12.7 141 5-149 57-218 (254)
25 PLN02888 enoyl-CoA hydratase 100.0 5.8E-32 1.3E-36 210.5 12.5 140 6-149 65-224 (265)
26 PRK09245 enoyl-CoA hydratase; 100.0 4.9E-32 1.1E-36 210.9 12.0 116 34-149 113-228 (266)
27 PRK07260 enoyl-CoA hydratase; 100.0 4.8E-32 1E-36 209.9 11.6 116 34-149 108-223 (255)
28 PRK07799 enoyl-CoA hydratase; 100.0 7E-32 1.5E-36 209.8 12.5 116 34-149 110-225 (263)
29 TIGR01929 menB naphthoate synt 100.0 8.9E-32 1.9E-36 208.8 12.9 112 34-145 107-218 (259)
30 PRK06142 enoyl-CoA hydratase; 100.0 7.3E-32 1.6E-36 210.6 12.2 116 34-149 119-235 (272)
31 PRK08140 enoyl-CoA hydratase; 100.0 8.9E-32 1.9E-36 209.0 12.5 116 34-149 109-224 (262)
32 PRK07110 polyketide biosynthes 100.0 1.1E-31 2.4E-36 207.2 12.3 142 5-150 59-220 (249)
33 PRK08139 enoyl-CoA hydratase; 100.0 1.3E-31 2.9E-36 208.6 12.8 115 34-149 114-228 (266)
34 PF00378 ECH: Enoyl-CoA hydrat 100.0 7.1E-32 1.5E-36 207.5 10.5 139 5-147 52-213 (245)
35 PRK07659 enoyl-CoA hydratase; 100.0 1.1E-31 2.4E-36 208.3 11.5 115 34-149 108-222 (260)
36 PRK07511 enoyl-CoA hydratase; 100.0 2.3E-31 5.1E-36 206.5 13.1 116 34-149 108-223 (260)
37 PRK05674 gamma-carboxygeranoyl 100.0 1.4E-31 3.1E-36 208.3 11.8 115 34-149 111-225 (265)
38 PLN02664 enoyl-CoA hydratase/d 100.0 1.6E-31 3.5E-36 209.0 12.0 116 34-149 121-237 (275)
39 PRK06688 enoyl-CoA hydratase; 100.0 1.6E-31 3.6E-36 207.1 12.0 140 6-149 60-221 (259)
40 PRK06023 enoyl-CoA hydratase; 100.0 2.8E-31 6E-36 205.2 13.2 136 5-144 60-217 (251)
41 PRK07327 enoyl-CoA hydratase; 100.0 2.5E-31 5.4E-36 207.3 12.9 111 34-144 116-226 (268)
42 PRK05995 enoyl-CoA hydratase; 100.0 3.3E-31 7.2E-36 205.8 13.1 115 34-149 109-223 (262)
43 PRK08258 enoyl-CoA hydratase; 100.0 3E-31 6.5E-36 207.7 12.8 116 34-149 123-239 (277)
44 PRK11423 methylmalonyl-CoA dec 100.0 3.7E-31 8.1E-36 205.6 13.0 136 6-145 60-217 (261)
45 PRK07396 dihydroxynaphthoic ac 100.0 4.5E-31 9.8E-36 206.3 13.0 112 34-145 117-228 (273)
46 PRK05870 enoyl-CoA hydratase; 100.0 1.9E-31 4E-36 206.0 10.0 135 6-146 58-215 (249)
47 PRK05981 enoyl-CoA hydratase; 100.0 4.4E-31 9.4E-36 205.6 12.0 116 34-149 113-228 (266)
48 PLN03214 probable enoyl-CoA hy 100.0 3.3E-31 7.1E-36 207.6 11.3 116 34-149 117-233 (278)
49 PRK06210 enoyl-CoA hydratase; 100.0 5E-31 1.1E-35 205.8 11.8 116 34-149 118-234 (272)
50 PRK06213 enoyl-CoA hydratase; 100.0 4.9E-31 1.1E-35 201.3 11.4 141 6-150 55-218 (229)
51 PRK08260 enoyl-CoA hydratase; 100.0 1.4E-30 3E-35 205.6 13.3 112 34-145 123-235 (296)
52 PRK05864 enoyl-CoA hydratase; 100.0 6.9E-31 1.5E-35 205.5 11.4 113 34-146 119-232 (276)
53 PRK07468 enoyl-CoA hydratase; 100.0 1.1E-30 2.3E-35 203.1 12.3 112 34-146 110-221 (262)
54 PLN02921 naphthoate synthase 100.0 1.8E-30 3.8E-35 207.3 13.4 112 34-145 171-282 (327)
55 PRK07938 enoyl-CoA hydratase; 100.0 1.8E-30 3.9E-35 200.5 11.9 113 34-149 104-216 (249)
56 PRK06495 enoyl-CoA hydratase; 100.0 5.1E-30 1.1E-34 198.8 11.8 113 34-149 107-219 (257)
57 TIGR03189 dienoyl_CoA_hyt cycl 100.0 7E-30 1.5E-34 197.4 12.4 137 6-149 55-212 (251)
58 COG1024 CaiD Enoyl-CoA hydrata 100.0 5.5E-30 1.2E-34 198.5 11.5 137 6-147 60-221 (257)
59 PRK08321 naphthoate synthase; 100.0 1E-29 2.2E-34 201.2 13.2 113 34-146 145-258 (302)
60 PRK07509 enoyl-CoA hydratase; 100.0 7.1E-30 1.5E-34 198.3 11.9 114 34-149 112-225 (262)
61 PRK08788 enoyl-CoA hydratase; 100.0 1.6E-29 3.4E-34 198.7 11.8 109 34-143 131-239 (287)
62 PRK06072 enoyl-CoA hydratase; 100.0 2.5E-29 5.4E-34 194.0 12.5 136 6-149 55-210 (248)
63 PRK07854 enoyl-CoA hydratase; 100.0 3.7E-29 8E-34 192.6 12.5 107 34-144 96-202 (243)
64 PRK08290 enoyl-CoA hydratase; 100.0 4.2E-29 9.1E-34 196.6 11.5 112 34-147 128-239 (288)
65 PRK05617 3-hydroxyisobutyryl-C 100.0 1.6E-29 3.5E-34 203.1 8.7 115 34-149 110-286 (342)
66 PRK08272 enoyl-CoA hydratase; 100.0 8.7E-29 1.9E-33 195.9 12.0 110 34-146 137-246 (302)
67 PRK07827 enoyl-CoA hydratase; 100.0 5.5E-29 1.2E-33 193.2 10.5 113 34-149 111-223 (260)
68 PRK07112 polyketide biosynthes 100.0 2.3E-28 5.1E-33 189.3 12.1 108 34-144 106-213 (255)
69 KOG1679|consensus 100.0 3.8E-29 8.2E-34 185.6 6.3 142 5-150 86-254 (291)
70 PLN02874 3-hydroxyisobutyryl-C 100.0 3.7E-28 7.9E-33 197.5 11.3 115 34-149 115-296 (379)
71 PRK12478 enoyl-CoA hydratase; 100.0 4.9E-28 1.1E-32 191.3 11.7 109 34-146 122-231 (298)
72 PLN02267 enoyl-CoA hydratase/i 100.0 1.1E-27 2.3E-32 184.1 12.6 112 34-145 104-220 (239)
73 PLN02157 3-hydroxyisobutyryl-C 100.0 9.8E-28 2.1E-32 195.6 12.4 109 34-144 143-251 (401)
74 PRK08184 benzoyl-CoA-dihydrodi 99.9 8.1E-28 1.8E-32 202.7 11.3 118 34-151 380-508 (550)
75 TIGR03222 benzo_boxC benzoyl-C 99.9 1.5E-27 3.3E-32 200.6 12.4 118 34-151 376-504 (546)
76 TIGR03200 dearomat_oah 6-oxocy 99.9 2.8E-27 6.2E-32 189.1 12.3 110 34-143 134-257 (360)
77 PRK11154 fadJ multifunctional 99.9 6.3E-27 1.4E-31 203.0 11.9 116 34-149 111-263 (708)
78 PRK11730 fadB multifunctional 99.9 1.6E-26 3.5E-31 200.5 11.9 96 34-129 112-207 (715)
79 PLN02988 3-hydroxyisobutyryl-C 99.9 2.1E-26 4.6E-31 187.0 11.5 108 34-143 115-222 (381)
80 TIGR02440 FadJ fatty oxidation 99.9 2.7E-26 5.8E-31 198.8 11.2 101 34-134 106-221 (699)
81 KOG0016|consensus 99.9 2.1E-26 4.6E-31 174.8 7.4 140 6-149 63-232 (266)
82 KOG1681|consensus 99.9 5E-26 1.1E-30 170.3 4.0 116 34-149 136-253 (292)
83 TIGR02437 FadB fatty oxidation 99.9 1.5E-24 3.3E-29 188.1 11.2 95 34-128 112-206 (714)
84 cd06558 crotonase-like Crotona 99.9 3.5E-24 7.5E-29 159.0 10.1 117 5-125 53-194 (195)
85 TIGR02441 fa_ox_alpha_mit fatt 99.9 2.6E-24 5.6E-29 187.2 10.8 119 5-127 69-226 (737)
86 PLN02851 3-hydroxyisobutyryl-C 99.9 6.6E-24 1.4E-28 173.3 12.2 99 34-134 148-246 (407)
87 TIGR03222 benzo_boxC benzoyl-C 99.9 2.8E-24 6.2E-29 180.9 10.0 99 34-132 129-232 (546)
88 PRK08184 benzoyl-CoA-dihydrodi 99.9 4.5E-24 9.8E-29 180.1 10.3 99 34-132 133-236 (550)
89 KOG1682|consensus 99.9 1.2E-22 2.5E-27 150.2 6.0 138 5-147 86-247 (287)
90 COG0447 MenB Dihydroxynaphthoi 99.8 4.9E-21 1.1E-25 142.6 5.4 111 34-144 126-236 (282)
91 KOG1684|consensus 99.8 7E-19 1.5E-23 139.2 4.8 105 34-139 145-249 (401)
92 cd07020 Clp_protease_NfeD_1 No 99.5 2.9E-14 6.2E-19 105.9 7.1 107 11-117 37-171 (187)
93 cd07014 S49_SppA Signal peptid 99.4 9.3E-13 2E-17 96.9 6.1 84 34-117 81-174 (177)
94 cd07016 S14_ClpP_1 Caseinolyti 99.1 2.1E-10 4.7E-15 82.9 7.9 99 11-109 37-160 (160)
95 TIGR00705 SppA_67K signal pept 98.7 6.9E-09 1.5E-13 89.0 1.9 92 34-129 388-524 (584)
96 cd00394 Clp_protease_like Case 98.6 1.2E-07 2.7E-12 68.3 6.7 99 11-109 36-161 (161)
97 cd07021 Clp_protease_NfeD_like 98.3 1.7E-06 3.6E-11 63.9 6.9 105 11-115 37-175 (178)
98 cd07019 S49_SppA_1 Signal pept 98.3 2.5E-07 5.4E-12 69.9 1.6 114 12-138 47-181 (211)
99 TIGR00706 SppA_dom signal pept 98.2 1.3E-05 2.8E-10 60.4 8.9 109 11-120 38-203 (207)
100 cd07023 S49_Sppa_N_C Signal pe 98.1 1.2E-05 2.5E-10 60.6 6.5 81 34-115 76-203 (208)
101 cd07022 S49_Sppa_36K_type Sign 98.0 2E-05 4.3E-10 59.6 5.9 81 34-116 83-210 (214)
102 cd07015 Clp_protease_NfeD Nodu 97.9 5.2E-05 1.1E-09 55.7 7.6 79 34-112 71-165 (172)
103 PRK00277 clpP ATP-dependent Cl 97.9 4.5E-05 9.7E-10 57.3 6.7 102 11-112 68-196 (200)
104 CHL00198 accA acetyl-CoA carbo 97.7 0.00022 4.8E-09 57.1 8.8 93 34-136 202-307 (322)
105 PRK12553 ATP-dependent Clp pro 97.7 0.0002 4.3E-09 54.1 7.9 102 11-112 72-202 (207)
106 cd07013 S14_ClpP Caseinolytic 97.6 0.00035 7.5E-09 50.7 7.7 99 11-109 37-162 (162)
107 PRK12319 acetyl-CoA carboxylas 97.6 0.0004 8.8E-09 54.1 8.5 93 34-136 146-247 (256)
108 PLN03230 acetyl-coenzyme A car 97.6 0.00035 7.5E-09 57.6 8.2 95 34-138 269-376 (431)
109 PRK14512 ATP-dependent Clp pro 97.6 0.00041 8.9E-09 52.0 7.7 106 11-116 60-193 (197)
110 CHL00028 clpP ATP-dependent Cl 97.6 0.00053 1.2E-08 51.5 8.1 103 11-113 67-197 (200)
111 PLN03229 acetyl-coenzyme A car 97.5 0.00078 1.7E-08 58.9 9.0 95 34-138 290-397 (762)
112 TIGR00493 clpP ATP-dependent C 97.4 0.0011 2.3E-08 49.5 8.0 101 11-111 63-190 (191)
113 cd07018 S49_SppA_67K_type Sign 97.4 0.00049 1.1E-08 52.3 6.0 84 34-118 87-219 (222)
114 PF00574 CLP_protease: Clp pro 97.4 0.00014 3.1E-09 53.4 2.8 101 11-111 53-180 (182)
115 cd07017 S14_ClpP_2 Caseinolyti 97.3 0.00058 1.3E-08 49.9 5.5 76 34-109 77-171 (171)
116 PRK14514 ATP-dependent Clp pro 97.2 0.0026 5.5E-08 48.6 8.1 78 34-111 122-218 (221)
117 PRK14513 ATP-dependent Clp pro 97.2 0.0028 6.2E-08 47.6 8.1 102 10-113 63-193 (201)
118 TIGR00513 accA acetyl-CoA carb 97.1 0.0025 5.5E-08 51.0 7.7 93 34-136 199-304 (316)
119 PRK05724 acetyl-CoA carboxylas 97.1 0.0037 7.9E-08 50.1 8.3 94 34-137 199-305 (319)
120 PRK12551 ATP-dependent Clp pro 96.9 0.0064 1.4E-07 45.6 8.1 80 34-113 93-191 (196)
121 PRK12552 ATP-dependent Clp pro 96.3 0.025 5.4E-07 43.2 7.5 77 34-112 117-214 (222)
122 TIGR03133 malonate_beta malona 96.0 0.037 8.1E-07 43.6 7.6 78 35-123 149-230 (274)
123 PF01343 Peptidase_S49: Peptid 96.0 0.0088 1.9E-07 42.9 3.5 34 88-121 116-149 (154)
124 PRK05654 acetyl-CoA carboxylas 96.0 0.036 7.8E-07 44.0 7.2 81 34-131 204-285 (292)
125 PF01972 SDH_sah: Serine dehyd 95.8 0.031 6.7E-07 43.9 6.3 38 34-71 128-165 (285)
126 TIGR00515 accD acetyl-CoA carb 95.6 0.033 7.2E-07 44.1 5.7 78 34-128 203-281 (285)
127 PRK11778 putative inner membra 95.5 0.045 9.8E-07 44.2 6.2 34 87-120 261-294 (330)
128 PRK10949 protease 4; Provision 95.4 0.048 1E-06 47.6 6.4 35 88-122 505-539 (618)
129 CHL00174 accD acetyl-CoA carbo 95.0 0.084 1.8E-06 42.0 6.3 75 34-125 217-292 (296)
130 COG0825 AccA Acetyl-CoA carbox 94.9 0.066 1.4E-06 42.4 5.3 64 39-112 203-266 (317)
131 COG0740 ClpP Protease subunit 94.8 0.13 2.8E-06 38.7 6.5 80 34-114 95-194 (200)
132 COG0616 SppA Periplasmic serin 94.7 0.086 1.9E-06 42.3 5.7 78 34-115 138-265 (317)
133 TIGR03134 malonate_gamma malon 94.1 0.12 2.6E-06 40.0 5.1 72 34-114 117-191 (238)
134 PRK07189 malonate decarboxylas 94.0 0.15 3.2E-06 40.7 5.5 25 35-59 158-182 (301)
135 PF01039 Carboxyl_trans: Carbo 93.9 0.18 3.9E-06 42.9 6.3 59 34-114 141-207 (493)
136 KOG1683|consensus 93.9 0.0084 1.8E-07 48.7 -1.7 80 40-119 166-249 (380)
137 COG1030 NfeD Membrane-bound se 92.1 0.41 9E-06 40.0 5.7 79 34-112 98-188 (436)
138 KOG0840|consensus 91.9 0.27 5.8E-06 38.3 4.1 76 34-111 156-256 (275)
139 TIGR01117 mmdA methylmalonyl-C 90.4 1.1 2.5E-05 38.3 6.9 86 34-127 398-496 (512)
140 TIGR01117 mmdA methylmalonyl-C 90.0 0.68 1.5E-05 39.7 5.2 71 34-126 164-243 (512)
141 cd07019 S49_SppA_1 Signal pept 85.3 0.73 1.6E-05 34.6 2.4 30 87-116 178-207 (211)
142 smart00250 PLEC Plectin repeat 84.2 0.93 2E-05 24.5 1.9 18 91-108 18-35 (38)
143 COG0777 AccD Acetyl-CoA carbox 83.8 1.7 3.8E-05 34.2 3.9 81 34-131 205-286 (294)
144 PLN02820 3-methylcrotonyl-CoA 83.3 3.9 8.4E-05 35.6 6.2 71 34-126 215-294 (569)
145 COG4799 Acetyl-CoA carboxylase 80.9 1 2.2E-05 38.7 1.8 71 34-129 173-251 (526)
146 PF00681 Plectin: Plectin repe 80.2 0.6 1.3E-05 26.3 0.2 20 90-109 17-36 (45)
147 TIGR00705 SppA_67K signal pept 79.1 9.5 0.00021 33.3 7.2 28 95-122 252-279 (584)
148 PRK10949 protease 4; Provision 72.3 19 0.00041 31.8 7.3 28 94-121 270-297 (618)
149 PLN02820 3-methylcrotonyl-CoA 67.2 30 0.00064 30.3 7.4 88 34-128 449-556 (569)
150 PF01039 Carboxyl_trans: Carbo 57.7 12 0.00025 32.0 3.2 35 95-129 447-481 (493)
151 PF08338 DUF1731: Domain of un 32.2 9.2 0.0002 21.9 -0.9 33 76-110 6-38 (48)
152 PF13766 ECH_C: 2-enoyl-CoA Hy 29.5 68 0.0015 21.8 2.9 33 118-150 32-64 (118)
153 COG2087 CobU Adenosyl cobinami 25.8 80 0.0017 23.3 2.8 29 54-82 122-150 (175)
154 PF08406 CbbQ_C: CbbQ/NirQ/Nor 22.8 1.7E+02 0.0036 18.8 3.6 32 94-125 53-84 (86)
155 PF06518 DUF1104: Protein of u 22.6 1.3E+02 0.0028 19.7 3.1 40 110-149 18-57 (93)
No 1
>KOG1680|consensus
Probab=100.00 E-value=4e-34 Score=218.72 Aligned_cols=143 Identities=49% Similarity=0.727 Sum_probs=130.7
Q ss_pred ccccccCCCCCCcchhhhhhhchhhh-----hhhh----------------hhchHHHHHHHHcCeeEecCCeEEecccc
Q psy9281 4 FEKLFILIDYEQKDLYRSKNLKFIQC-----LKIW----------------IYLGGGCELAMMCDIIYAGEKAKFGQPEI 62 (152)
Q Consensus 4 ~~k~Fs~~~caG~Dl~~~~~~~~~~~-----~~~~----------------~a~G~G~~lal~cD~ria~~~a~f~~pe~ 62 (152)
.+|.|| +|.||+++......+. ...| +|+|||++|++.||+|||+++++|++|+.
T Consensus 90 ~gksFc----sG~Dl~e~~~~~~~~~~~~~~~~~~~~~~~~~KPvIaainG~AlgGG~ELalmCDirva~~~Akfg~~~~ 165 (290)
T KOG1680|consen 90 SGKSFC----SGADLKEMKKDEFQDVSDGIFLRVWDLVSRLKKPVIAAINGFALGGGLELALMCDIRVAGEGAKFGFFEI 165 (290)
T ss_pred CCCccc----cccCHHHHhhccccccccccccchhhhhhhcccceeEeeeceeeccchhhhhhcceEeccCCCeeccccc
Confidence 468999 9999999987554433 1111 99999999999999999999999999999
Q ss_pred cccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q psy9281 63 IIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVKEAVN 142 (152)
Q Consensus 63 ~~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~~l~~~~~~~a~~l~~~~~~a~~~~K~~l~ 142 (152)
++|++|.+|++.+|++.+|.++|++++++|++++++||.++||||+|+|.+++..++.++++.|++.||.+++..|+.+|
T Consensus 166 ~~Gi~p~~GGT~rl~r~vG~s~Ale~~ltg~~~~AqeA~~~GlVn~Vvp~~~~l~eAv~l~~~Ia~~~~~~v~~~K~svn 245 (290)
T KOG1680|consen 166 RMGIIPSWGGTQRLPRIVGKSRALEMILTGRRLGAQEAKKIGLVNKVVPSGDALGEAVKLAEQIAKNSPLVVRADKESVN 245 (290)
T ss_pred ccCCccCCCchhhHHHHhChHHHHHHHHhcCcccHHHHHhCCceeEeecchhHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCC
Q psy9281 143 IDDTEGLN 150 (152)
Q Consensus 143 ~~~~~~l~ 150 (152)
..++..+.
T Consensus 246 ~~~e~~l~ 253 (290)
T KOG1680|consen 246 AAYETTLF 253 (290)
T ss_pred HHhhccHH
Confidence 87766543
No 2
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.7e-33 Score=214.39 Aligned_cols=140 Identities=28% Similarity=0.399 Sum_probs=124.8
Q ss_pred ccccCCCCCCcchhhhhhhchhh------h----hhhh-------------hhchHHHHHHHHcCeeEecCCeEEecccc
Q psy9281 6 KLFILIDYEQKDLYRSKNLKFIQ------C----LKIW-------------IYLGGGCELAMMCDIIYAGEKAKFGQPEI 62 (152)
Q Consensus 6 k~Fs~~~caG~Dl~~~~~~~~~~------~----~~~~-------------~a~G~G~~lal~cD~ria~~~a~f~~pe~ 62 (152)
++|| +|+||+++....... . +..+ +|+|||++|+++||+||++++++|++||+
T Consensus 55 ~~F~----aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~ 130 (255)
T PRK08150 55 DHFC----AGLDLSELRERDAGEGMHHSRRWHRVFDKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADESTYFALPEG 130 (255)
T ss_pred Ccee----cCcCHHHHhhccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEeCCCEEecccc
Confidence 6899 999999875421110 0 1111 99999999999999999999999999999
Q ss_pred cccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q psy9281 63 IIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVKEAVN 142 (152)
Q Consensus 63 ~~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~~l~~~~~~~a~~l~~~~~~a~~~~K~~l~ 142 (152)
++|++|++++++++++++|+.++++++++|++++++||+++||||+++|++++.+++.+++++++..||.+++.+|+.++
T Consensus 131 ~~Gl~p~~g~~~~l~~~iG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~ 210 (255)
T PRK08150 131 QRGIFVGGGGSVRVPRLIGVARMTDMMLTGRVYDAQEGERLGLAQYLVPAGEALDKAMELARRIAQNAPLTNFAVLNALP 210 (255)
T ss_pred ccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHcCCccEeeCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccccCCC
Q psy9281 143 IDDTEGL 149 (152)
Q Consensus 143 ~~~~~~l 149 (152)
.....++
T Consensus 211 ~~~~~~~ 217 (255)
T PRK08150 211 RIADMSA 217 (255)
T ss_pred HhccCCH
Confidence 7655443
No 3
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.1e-32 Score=213.69 Aligned_cols=140 Identities=29% Similarity=0.444 Sum_probs=124.6
Q ss_pred cccccCCCCCCcchhhhhhhchh---hh-------hhhh-------------hhchHHHHHHHHcCeeEecCCeEEeccc
Q psy9281 5 EKLFILIDYEQKDLYRSKNLKFI---QC-------LKIW-------------IYLGGGCELAMMCDIIYAGEKAKFGQPE 61 (152)
Q Consensus 5 ~k~Fs~~~caG~Dl~~~~~~~~~---~~-------~~~~-------------~a~G~G~~lal~cD~ria~~~a~f~~pe 61 (152)
+|+|| +|+||+++.+.... .. +..+ +|+|||++|+++||+||++++++|++||
T Consensus 57 ~~~F~----aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe 132 (258)
T PRK09076 57 EKFFS----AGADLNLFADGDKAVAREMARRFGEAFEALSAFRGVSIAAINGYAMGGGLECALACDIRIAEEQAQMALPE 132 (258)
T ss_pred CCceE----eCcCHHHHhhcChhhHHHHHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEecCCCEeeCcc
Confidence 36899 99999987542111 00 1111 9999999999999999999999999999
Q ss_pred ccccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy9281 62 IIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVKEAV 141 (152)
Q Consensus 62 ~~~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~~l~~~~~~~a~~l~~~~~~a~~~~K~~l 141 (152)
+++|++|+++++++|++++|..++++++++|++++++||+++||||+++|++++.+++.+++++++..||.+++.+|+++
T Consensus 133 ~~~Gl~p~~g~~~~l~~~iG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l 212 (258)
T PRK09076 133 ASVGLLPCAGGTQNLPWLVGEGWAKRMILCGERVDAATALRIGLVEEVVEKGEAREAALALAQKVANQSPSAVAACKTLI 212 (258)
T ss_pred cccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHCCCCceecCchhHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccCC
Q psy9281 142 NIDDTEG 148 (152)
Q Consensus 142 ~~~~~~~ 148 (152)
+.....+
T Consensus 213 ~~~~~~~ 219 (258)
T PRK09076 213 QAARNGP 219 (258)
T ss_pred HHHhcCC
Confidence 8765443
No 4
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.4e-32 Score=212.99 Aligned_cols=140 Identities=29% Similarity=0.398 Sum_probs=123.4
Q ss_pred cccccCCCCCCcchhhhhhhchhh---h-------hhhh-------------hhchHHHHHHHHcCeeEecCCeEEeccc
Q psy9281 5 EKLFILIDYEQKDLYRSKNLKFIQ---C-------LKIW-------------IYLGGGCELAMMCDIIYAGEKAKFGQPE 61 (152)
Q Consensus 5 ~k~Fs~~~caG~Dl~~~~~~~~~~---~-------~~~~-------------~a~G~G~~lal~cD~ria~~~a~f~~pe 61 (152)
+|+|| +|+||+++.+..... . +..+ +|+|||++|+++||+||++++++|++||
T Consensus 62 ~~~F~----aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe 137 (256)
T PRK06143 62 EKAFI----GGADIKEMATLDQASAEAFISRLRDLCDAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHDAQFGMPE 137 (256)
T ss_pred CCccc----CCcCHHHHhhcChhhHHHHHHHHHHHHHHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEecCCCEEeCCc
Confidence 36899 999999875421111 0 1111 9999999999999999999999999999
Q ss_pred ccccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy9281 62 IIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVKEAV 141 (152)
Q Consensus 62 ~~~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~~l~~~~~~~a~~l~~~~~~a~~~~K~~l 141 (152)
+++|+ |+.++++++++++|+.++++++++|++++++||+++||||+++|++++.+++.+++++++..||.+++.+|+.+
T Consensus 138 ~~~G~-p~~~~~~~l~~~iG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l 216 (256)
T PRK06143 138 VRVGI-PSVIHAALLPRLIGWARTRWLLLTGETIDAAQALAWGLVDRVVPLAELDAAVERLAASLAGCGPQALRQQKRLL 216 (256)
T ss_pred cccCC-CCccHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHHCCCcCeecCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99998 77888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccCCC
Q psy9281 142 NIDDTEGL 149 (152)
Q Consensus 142 ~~~~~~~l 149 (152)
+.....++
T Consensus 217 ~~~~~~~l 224 (256)
T PRK06143 217 REWEDMPL 224 (256)
T ss_pred HHHccCCH
Confidence 87655443
No 5
>PLN02600 enoyl-CoA hydratase
Probab=100.00 E-value=1.5e-32 Score=212.22 Aligned_cols=141 Identities=36% Similarity=0.603 Sum_probs=125.3
Q ss_pred cccccCCCCCCcchhhhhhhchhh---h-------hhhh-------------hhchHHHHHHHHcCeeEecCCeEEeccc
Q psy9281 5 EKLFILIDYEQKDLYRSKNLKFIQ---C-------LKIW-------------IYLGGGCELAMMCDIIYAGEKAKFGQPE 61 (152)
Q Consensus 5 ~k~Fs~~~caG~Dl~~~~~~~~~~---~-------~~~~-------------~a~G~G~~lal~cD~ria~~~a~f~~pe 61 (152)
.|+|| +|+||+++.+..... . +..+ +|+|||++|+++||+||++++++|++||
T Consensus 50 g~~F~----aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe 125 (251)
T PLN02600 50 PGVFC----AGADLKERRKMSPSEVQKFVNSLRSTFSSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEEAVFGLPE 125 (251)
T ss_pred CCcee----eCcCHHHHhccChHHHHHHHHHHHHHHHHHHhCCCCEEEEecCeecchhHHHHHhCCEEEeeCCCEEeCcc
Confidence 47899 999999875421111 0 1111 9999999999999999999999999999
Q ss_pred ccccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy9281 62 IIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVKEAV 141 (152)
Q Consensus 62 ~~~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~~l~~~~~~~a~~l~~~~~~a~~~~K~~l 141 (152)
+++|++|+++++++|++++|+.++++++++|++++++||+++||||+++|++++.+++.++++++++.||.+++.+|+.+
T Consensus 126 ~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~la~~~p~a~~~~K~~l 205 (251)
T PLN02600 126 TGLAIIPGAGGTQRLPRLVGRSRAKELIFTGRRIGAREAASMGLVNYCVPAGEAYEKALELAQEINQKGPLAIKMAKKAI 205 (251)
T ss_pred cccCcCCCchHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCCcEeeChhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccCCC
Q psy9281 142 NIDDTEGL 149 (152)
Q Consensus 142 ~~~~~~~l 149 (152)
+.....++
T Consensus 206 ~~~~~~~~ 213 (251)
T PLN02600 206 NEGSEVDM 213 (251)
T ss_pred HHHccCCH
Confidence 87655443
No 6
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.7e-32 Score=212.58 Aligned_cols=141 Identities=49% Similarity=0.781 Sum_probs=125.7
Q ss_pred cccccCCCCCCcchhhhhhhchhh-----h---hhhh-------------hhchHHHHHHHHcCeeEecCCeEEeccccc
Q psy9281 5 EKLFILIDYEQKDLYRSKNLKFIQ-----C---LKIW-------------IYLGGGCELAMMCDIIYAGEKAKFGQPEII 63 (152)
Q Consensus 5 ~k~Fs~~~caG~Dl~~~~~~~~~~-----~---~~~~-------------~a~G~G~~lal~cD~ria~~~a~f~~pe~~ 63 (152)
.|+|| +|+||+++.+....+ . +..+ +|+|||++|+++||+||++++++|++||++
T Consensus 58 g~~F~----aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~ 133 (257)
T PRK05862 58 EKAFA----AGADIKEMADLSFMDVYKGDYITNWEKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADTAKFGQPEIK 133 (257)
T ss_pred CCceE----CCcChHhHhccchhHHHHHHHHHHHHHHHhCCCCEEEEEccEEeHHHHHHHHHCCEEEEeCCCEEeCchhc
Confidence 36899 999999875432111 1 1111 999999999999999999999999999999
Q ss_pred ccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q psy9281 64 IGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVKEAVNI 143 (152)
Q Consensus 64 ~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~~l~~~~~~~a~~l~~~~~~a~~~~K~~l~~ 143 (152)
+|++|+++++++|++++|..++++++++|++++++||+++||||+++|++++.+++.+++++++..||.+++.+|+.++.
T Consensus 134 ~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~ 213 (257)
T PRK05862 134 LGVLPGMGGSQRLTRAVGKAKAMDLCLTGRMMDAAEAERAGLVSRVVPADKLLDEALAAATTIASFSLPAVMMAKEAVNR 213 (257)
T ss_pred cCcCCCccHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCCCEeeCHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cccCCC
Q psy9281 144 DDTEGL 149 (152)
Q Consensus 144 ~~~~~l 149 (152)
....++
T Consensus 214 ~~~~~l 219 (257)
T PRK05862 214 AYETTL 219 (257)
T ss_pred HhcCCH
Confidence 665544
No 7
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.8e-32 Score=212.71 Aligned_cols=140 Identities=36% Similarity=0.484 Sum_probs=124.6
Q ss_pred ccccCCCCCCcchhhhhhhchh----hhhh------hh----------hhchHHHHHHHHcCeeEecCCeEEeccccccc
Q psy9281 6 KLFILIDYEQKDLYRSKNLKFI----QCLK------IW----------IYLGGGCELAMMCDIIYAGEKAKFGQPEIIIG 65 (152)
Q Consensus 6 k~Fs~~~caG~Dl~~~~~~~~~----~~~~------~~----------~a~G~G~~lal~cD~ria~~~a~f~~pe~~~G 65 (152)
|+|| +|+||+++...... ..+. .+ +|+|||++|+++||+||++++++|++||+++|
T Consensus 60 ~~F~----aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G 135 (259)
T PRK06494 60 KAFS----AGNDLKEQAAGGKRGWPESGFGGLTSRFDLDKPIIAAVNGVAMGGGFELALACDLIVAAENATFALPEPRVG 135 (259)
T ss_pred Ccee----ccccHHhHhhcCcchhhhHHHHHHHHHhcCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccC
Confidence 7899 99999987532111 0110 11 99999999999999999999999999999999
Q ss_pred ccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHhccc
Q psy9281 66 TMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVKEAVNIDD 145 (152)
Q Consensus 66 ~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~~l~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~ 145 (152)
++|+.+++++|++++|+.++++++++|++++++||+++||||+++|++++.+++.+++++++..||.+++.+|+.++...
T Consensus 136 l~p~~g~~~~l~~~vg~~~a~~lll~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~ 215 (259)
T PRK06494 136 LAALAGGLHRLPRQIGLKRAMGMILTGRRVTAREGLELGFVNEVVPAGELLAAAERWADDILACSPLSIRASKQAVYRGL 215 (259)
T ss_pred CCCCchHHHHHHHHcCHHHHHHHHHcCCcCCHHHHHHcCCCcEecCHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred cCCC
Q psy9281 146 TEGL 149 (152)
Q Consensus 146 ~~~l 149 (152)
..++
T Consensus 216 ~~~~ 219 (259)
T PRK06494 216 EVSL 219 (259)
T ss_pred cCCH
Confidence 5443
No 8
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.9e-32 Score=212.01 Aligned_cols=140 Identities=35% Similarity=0.481 Sum_probs=124.5
Q ss_pred cccccCCCCCCcchhhhhhhchhh----hhh-----hh----------hhchHHHHHHHHcCeeEecCCeEEeccccccc
Q psy9281 5 EKLFILIDYEQKDLYRSKNLKFIQ----CLK-----IW----------IYLGGGCELAMMCDIIYAGEKAKFGQPEIIIG 65 (152)
Q Consensus 5 ~k~Fs~~~caG~Dl~~~~~~~~~~----~~~-----~~----------~a~G~G~~lal~cD~ria~~~a~f~~pe~~~G 65 (152)
.|+|| +|+|++++.+..... .+. .+ +|+|||++|+++||+||++++++|++||+++|
T Consensus 57 g~~F~----aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G 132 (254)
T PRK08252 57 GGTFC----AGMDLKAFARGERPSIPGRGFGGLTERPPRKPLIAAVEGYALAGGFELALACDLIVAARDAKFGLPEVKRG 132 (254)
T ss_pred CCceE----cCcCHHHHhcccchhhhHHHHHHHHHhcCCCCEEEEECCEEehHHHHHHHhCCEEEEeCCCEEeCchhhcC
Confidence 36899 999999875421111 010 11 99999999999999999999999999999999
Q ss_pred ccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHhccc
Q psy9281 66 TMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVKEAVNIDD 145 (152)
Q Consensus 66 ~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~~l~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~ 145 (152)
++|+++++++|++++|+.++++++++|++++++||+++||||+++|++++.+++.+++++++..||.+++.+|+.++...
T Consensus 133 l~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~ 212 (254)
T PRK08252 133 LVAAGGGLLRLPRRIPYHIAMELALTGDMLTAERAHELGLVNRLTEPGQALDAALELAERIAANGPLAVAASKRIVVESG 212 (254)
T ss_pred CCCCchHHHHHHHHcCHHHHHHHHHcCCccCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred cCC
Q psy9281 146 TEG 148 (152)
Q Consensus 146 ~~~ 148 (152)
..+
T Consensus 213 ~~~ 215 (254)
T PRK08252 213 DWS 215 (254)
T ss_pred cCC
Confidence 443
No 9
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.4e-32 Score=213.36 Aligned_cols=116 Identities=41% Similarity=0.676 Sum_probs=111.5
Q ss_pred hhchHHHHHHHHcCeeEecCCeEEecccccccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCcc
Q psy9281 34 IYLGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPE 113 (152)
Q Consensus 34 ~a~G~G~~lal~cD~ria~~~a~f~~pe~~~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~ 113 (152)
+|+|||++|+++||+||++++++|++||+++|++|+++++++|++++|..++++++++|++++++||+++||||+++|++
T Consensus 110 ~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 189 (260)
T PRK05980 110 LAFGGGCEITEAVHLAIASERALFAKPEIRLGMPPTFGGTQRLPRLAGRKRALELLLTGDAFSAERALEIGLVNAVVPHE 189 (260)
T ss_pred EEEhhhhHHhHhCCEEEecCCCEecCcccccCCCCCchHhhHHHhhcCHHHHHHHHHcCCccCHHHHHHcCCCCcccCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHhccccCCC
Q psy9281 114 KLLEETIKLAERIGEHSPLIVTQVKEAVNIDDTEGL 149 (152)
Q Consensus 114 ~l~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l 149 (152)
++.+++.++++++++.||.+++.+|+.++.....++
T Consensus 190 ~l~~~a~~~a~~la~~~p~a~~~~K~~~~~~~~~~~ 225 (260)
T PRK05980 190 ELLPAARALARRIIRHSPVAVAAILTAVTRGLNLSI 225 (260)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCH
Confidence 999999999999999999999999999987655443
No 10
>PRK05869 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=4.2e-32 Score=206.45 Aligned_cols=138 Identities=28% Similarity=0.478 Sum_probs=123.7
Q ss_pred cccccCCCCCCcchhhhhhhchhh----------hhhhh-------------hhchHHHHHHHHcCeeEecCCeEEeccc
Q psy9281 5 EKLFILIDYEQKDLYRSKNLKFIQ----------CLKIW-------------IYLGGGCELAMMCDIIYAGEKAKFGQPE 61 (152)
Q Consensus 5 ~k~Fs~~~caG~Dl~~~~~~~~~~----------~~~~~-------------~a~G~G~~lal~cD~ria~~~a~f~~pe 61 (152)
.|+|| +|+||+++......+ .+..+ +|+|||++|+++||+||++++++|++||
T Consensus 61 g~~Fc----aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe 136 (222)
T PRK05869 61 HEIFS----AGDDMPELRTLSAQEADTAARVRQQAVDAVAAIPKPTVAAITGYALGAGLTLALAADWRVSGDNVKFGATE 136 (222)
T ss_pred CCCcC----cCcCHHHHhccChhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCEeecHHHHHHHhCCEEEecCCCEEcCch
Confidence 36899 999999875422111 01111 9999999999999999999999999999
Q ss_pred ccccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy9281 62 IIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVKEAV 141 (152)
Q Consensus 62 ~~~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~~l~~~~~~~a~~l~~~~~~a~~~~K~~l 141 (152)
+++|++|+.+++.++++++|..++++++++|++++++||+++||||+++|++++.+++.+++++++..||.+++.+|+.+
T Consensus 137 ~~~Gl~p~~g~~~~l~~~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~~ 216 (222)
T PRK05869 137 ILAGLAPSGDGMARLTRAAGPSRAKELVFSGRFFDAEEALALGLIDEMVAPDDVYDAAAAWARRFLDGPPHALAAAKAGI 216 (222)
T ss_pred hccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHCCCCCEeeCchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccc
Q psy9281 142 NIDDT 146 (152)
Q Consensus 142 ~~~~~ 146 (152)
+..++
T Consensus 217 ~~~~~ 221 (222)
T PRK05869 217 SDVYE 221 (222)
T ss_pred HHHhh
Confidence 87653
No 11
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=99.98 E-value=3.1e-32 Score=211.38 Aligned_cols=141 Identities=28% Similarity=0.458 Sum_probs=125.7
Q ss_pred cccccCCCCCCcchhhhhhhchh--------hhhhhh-------------hhchHHHHHHHHcCeeEecCCeEEeccccc
Q psy9281 5 EKLFILIDYEQKDLYRSKNLKFI--------QCLKIW-------------IYLGGGCELAMMCDIIYAGEKAKFGQPEII 63 (152)
Q Consensus 5 ~k~Fs~~~caG~Dl~~~~~~~~~--------~~~~~~-------------~a~G~G~~lal~cD~ria~~~a~f~~pe~~ 63 (152)
.|+|| +|+|++++.+.... ..+..+ +|+|+|++|+++||+||++++++|++||++
T Consensus 58 g~~Fc----aG~Dl~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~ 133 (258)
T PRK06190 58 DPAFC----AGLDLKELGGDGSAYGAQDALPNPSPAWPAMRKPVIGAINGAAVTGGLELALACDILIASERARFADTHAR 133 (258)
T ss_pred CCCcc----CCcCHHHHhcccchhhHHHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEeCCCEEECcccc
Confidence 46899 99999987542111 011111 999999999999999999999999999999
Q ss_pred ccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q psy9281 64 IGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVKEAVNI 143 (152)
Q Consensus 64 ~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~~l~~~~~~~a~~l~~~~~~a~~~~K~~l~~ 143 (152)
+|++|+.++++++++++|+.++++++++|++++++||+++||||+++|++++.+++.+++++++..||.+++.+|+.++.
T Consensus 134 ~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~ 213 (258)
T PRK06190 134 VGILPGWGLSVRLPQKVGIGRARRMSLTGDFLDAADALRAGLVTEVVPHDELLPRARRLAASIAGNNPAAVRALKASYDD 213 (258)
T ss_pred cCcCCCccHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCCeEecCHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cccCCC
Q psy9281 144 DDTEGL 149 (152)
Q Consensus 144 ~~~~~l 149 (152)
....++
T Consensus 214 ~~~~~l 219 (258)
T PRK06190 214 GAAAQT 219 (258)
T ss_pred hhcCCH
Confidence 655544
No 12
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=99.98 E-value=2.5e-32 Score=211.94 Aligned_cols=140 Identities=41% Similarity=0.610 Sum_probs=124.9
Q ss_pred ccccCCCCCCcchhhhhhhchhh---h-------hhhh-------------hhchHHHHHHHHcCeeEecCCeEEecccc
Q psy9281 6 KLFILIDYEQKDLYRSKNLKFIQ---C-------LKIW-------------IYLGGGCELAMMCDIIYAGEKAKFGQPEI 62 (152)
Q Consensus 6 k~Fs~~~caG~Dl~~~~~~~~~~---~-------~~~~-------------~a~G~G~~lal~cD~ria~~~a~f~~pe~ 62 (152)
|+|| +|+||+++......+ . +..+ +|+|+|++|+++||+||++++++|++||+
T Consensus 60 ~~F~----aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~ 135 (260)
T PRK07657 60 KAFC----AGADLKERAGMNEEQVRHAVSLIRTTMEMVEQLPQPVIAAINGIALGGGLELALACDFRIAAESASLGLTET 135 (260)
T ss_pred CceE----cCcChHhhhcCChhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCEeechHHHHHHhCCEEEeeCCCEEcCchh
Confidence 6899 999999875321111 0 1111 99999999999999999999999999999
Q ss_pred cccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q psy9281 63 IIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVKEAVN 142 (152)
Q Consensus 63 ~~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~~l~~~~~~~a~~l~~~~~~a~~~~K~~l~ 142 (152)
++|++|+++++++|++++|+.++++++++|++++++||+++||||+++|++++++++.+++++++..||.+++.+|+.++
T Consensus 136 ~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~ 215 (260)
T PRK07657 136 TLAIIPGAGGTQRLPRLIGVGRAKELIYTGRRISAQEAKEIGLVEFVVPAHLLEEKAIEIAEKIASNGPIAVRQAKEAIS 215 (260)
T ss_pred ccCcCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCCCeecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccccCCC
Q psy9281 143 IDDTEGL 149 (152)
Q Consensus 143 ~~~~~~l 149 (152)
.....++
T Consensus 216 ~~~~~~~ 222 (260)
T PRK07657 216 NGIQVDL 222 (260)
T ss_pred HhccCCH
Confidence 7655443
No 13
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=99.98 E-value=3e-32 Score=211.48 Aligned_cols=141 Identities=44% Similarity=0.717 Sum_probs=125.6
Q ss_pred cccccCCCCCCcchhhhhhhchhh----------hhhhh-------------hhchHHHHHHHHcCeeEecCCeEEeccc
Q psy9281 5 EKLFILIDYEQKDLYRSKNLKFIQ----------CLKIW-------------IYLGGGCELAMMCDIIYAGEKAKFGQPE 61 (152)
Q Consensus 5 ~k~Fs~~~caG~Dl~~~~~~~~~~----------~~~~~-------------~a~G~G~~lal~cD~ria~~~a~f~~pe 61 (152)
+|+|| +|+||+++.+..... .+..+ +|+|||++|+++||+||++++++|++||
T Consensus 59 ~~~F~----aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~va~~~a~f~~pe 134 (260)
T PRK05809 59 EKAFV----AGADISEMKDLNEEEGRKFGLLGNKVFRKLENLDKPVIAAINGFALGGGCELSMACDIRIASEKAKFGQPE 134 (260)
T ss_pred CCcee----eCcChHhHhccChHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeecHHHHHHHhCCEEEeeCCCEEeCcc
Confidence 37899 999999875422111 01111 9999999999999999999999999999
Q ss_pred ccccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy9281 62 IIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVKEAV 141 (152)
Q Consensus 62 ~~~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~~l~~~~~~~a~~l~~~~~~a~~~~K~~l 141 (152)
+++|++|+.+++++|++++|+.++++++++|++++++||+++||||+++|++++.+.+.+++++++..||.+++.+|+.+
T Consensus 135 ~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l 214 (260)
T PRK05809 135 VGLGITPGFGGTQRLARIVGPGKAKELIYTGDMINAEEALRIGLVNKVVEPEKLMEEAKALANKIAANAPIAVKLCKDAI 214 (260)
T ss_pred cccCCCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCCCcccChHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccCCC
Q psy9281 142 NIDDTEGL 149 (152)
Q Consensus 142 ~~~~~~~l 149 (152)
+.....++
T Consensus 215 ~~~~~~~~ 222 (260)
T PRK05809 215 NRGMQVDI 222 (260)
T ss_pred HHHhcCCH
Confidence 87655443
No 14
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=99.98 E-value=2.6e-32 Score=211.30 Aligned_cols=115 Identities=40% Similarity=0.592 Sum_probs=110.7
Q ss_pred hhchHHHHHHHHcCeeEecCCeEEecccccccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCcc
Q psy9281 34 IYLGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPE 113 (152)
Q Consensus 34 ~a~G~G~~lal~cD~ria~~~a~f~~pe~~~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~ 113 (152)
+|+|+|++|+++||+||++++++|++||+++|++|++++++++++++|.+++++++++|++++++||+++||||+++|++
T Consensus 102 ~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 181 (255)
T PRK06563 102 YCLTLGIELMLAADIVVAADNTRFAQLEVQRGILPFGGATLRFPQAAGWGNAMRYLLTGDEFDAQEALRLGLVQEVVPPG 181 (255)
T ss_pred eeecHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhhHHHHHHHHHcCCCcCHHHHHHcCCCcEeeCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHhccccCC
Q psy9281 114 KLLEETIKLAERIGEHSPLIVTQVKEAVNIDDTEG 148 (152)
Q Consensus 114 ~l~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~ 148 (152)
++.+++.++++++++.||.+++.+|+.++.....+
T Consensus 182 ~l~~~a~~~a~~la~~~~~a~~~~K~~~~~~~~~~ 216 (255)
T PRK06563 182 EQLERAIELAERIARAAPLGVQATLASARAAVREG 216 (255)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCC
Confidence 99999999999999999999999999998765444
No 15
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=99.98 E-value=3.3e-32 Score=210.77 Aligned_cols=141 Identities=45% Similarity=0.772 Sum_probs=125.2
Q ss_pred cccccCCCCCCcchhhhhhhchhh--------hhhhh-------------hhchHHHHHHHHcCeeEecCCeEEeccccc
Q psy9281 5 EKLFILIDYEQKDLYRSKNLKFIQ--------CLKIW-------------IYLGGGCELAMMCDIIYAGEKAKFGQPEII 63 (152)
Q Consensus 5 ~k~Fs~~~caG~Dl~~~~~~~~~~--------~~~~~-------------~a~G~G~~lal~cD~ria~~~a~f~~pe~~ 63 (152)
.|+|| +|+||+++.+..... .+..+ +|+|||++|+++||+||++++++|++||++
T Consensus 56 g~~F~----aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~ 131 (255)
T PRK09674 56 ARFFA----AGADLNEMAEKDLAATLNDPRPQLWQRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENARFGLPEIT 131 (255)
T ss_pred CCcee----cccChHhHhccchhhhHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEeCchhh
Confidence 36899 999999875421110 11111 999999999999999999999999999999
Q ss_pred ccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q psy9281 64 IGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVKEAVNI 143 (152)
Q Consensus 64 ~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~~l~~~~~~~a~~l~~~~~~a~~~~K~~l~~ 143 (152)
+|++|+++++++|++++|+.++++++++|++++++||+++||||+++|++++.+++.+++++++..||.+++.+|+.++.
T Consensus 132 ~Gl~p~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~~~a~~~~K~~l~~ 211 (255)
T PRK09674 132 LGIMPGAGGTQRLIRSVGKSLASQMVLTGESITAQQAQQAGLVSEVFPPELTLERALQLASKIARHSPLALRAAKQALRQ 211 (255)
T ss_pred cCCCCCccHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCcEecChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cccCCC
Q psy9281 144 DDTEGL 149 (152)
Q Consensus 144 ~~~~~l 149 (152)
....++
T Consensus 212 ~~~~~~ 217 (255)
T PRK09674 212 SQEVDL 217 (255)
T ss_pred hhcCCH
Confidence 655443
No 16
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=99.98 E-value=3.5e-32 Score=211.27 Aligned_cols=139 Identities=29% Similarity=0.469 Sum_probs=124.1
Q ss_pred ccccCCCCCCcchhhhhhhchh--hh-------hhhh-------------hhchHHHHHHHHcCeeEecCCeEEeccccc
Q psy9281 6 KLFILIDYEQKDLYRSKNLKFI--QC-------LKIW-------------IYLGGGCELAMMCDIIYAGEKAKFGQPEII 63 (152)
Q Consensus 6 k~Fs~~~caG~Dl~~~~~~~~~--~~-------~~~~-------------~a~G~G~~lal~cD~ria~~~a~f~~pe~~ 63 (152)
|+|| +|+||+++.+.... .. +..+ +|+|||++|+++||+||++++++|++||++
T Consensus 58 ~~F~----aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~ 133 (261)
T PRK03580 58 KFFS----AGWDLKAAAEGEAPDADFGPGGFAGLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAK 133 (261)
T ss_pred Ccee----cccCHHHHhccCcchhhhhhhhhHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEecCCCEEeCcccc
Confidence 7899 99999987532110 00 1111 999999999999999999999999999999
Q ss_pred ccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q psy9281 64 IGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVKEAVNI 143 (152)
Q Consensus 64 ~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~~l~~~~~~~a~~l~~~~~~a~~~~K~~l~~ 143 (152)
+|++|+.+++++|++++|+.++++++++|++++++||+++|||++++|++++.+++.+++++++..||.+++.+|+.++.
T Consensus 134 ~G~~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~ 213 (261)
T PRK03580 134 LGIVPDSGGVLRLPKRLPPAIANEMVMTGRRMDAEEALRWGIVNRVVPQAELMDRARELAQQLVNSAPLAIAALKEIYRE 213 (261)
T ss_pred cCcCCCccHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCCcEecCHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cccCC
Q psy9281 144 DDTEG 148 (152)
Q Consensus 144 ~~~~~ 148 (152)
....+
T Consensus 214 ~~~~~ 218 (261)
T PRK03580 214 TSEMP 218 (261)
T ss_pred HhcCC
Confidence 65443
No 17
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=99.98 E-value=3.1e-32 Score=211.01 Aligned_cols=116 Identities=43% Similarity=0.694 Sum_probs=111.2
Q ss_pred hhchHHHHHHHHcCeeEecCCeEEecccccccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCcc
Q psy9281 34 IYLGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPE 113 (152)
Q Consensus 34 ~a~G~G~~lal~cD~ria~~~a~f~~pe~~~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~ 113 (152)
+|+|+|++|+++||+||++++++|++||+++|++|+++++++|++++|..++++++++|++++++||+++||||+++|++
T Consensus 104 ~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 183 (257)
T PRK07658 104 AALGGGLELAMSCHIRFATESAKLGLPELNLGLIPGFAGTQRLPRYVGKAKALEMMLTSEPITGAEALKWGLVNGVFPEE 183 (257)
T ss_pred eeeeHHHHHHHhCCEEEecCCCcccCcccccCCCCCCcHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHcCCcCeecChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHhccccCCC
Q psy9281 114 KLLEETIKLAERIGEHSPLIVTQVKEAVNIDDTEGL 149 (152)
Q Consensus 114 ~l~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l 149 (152)
++.+++.++++++++.||.+++.+|+.++.....++
T Consensus 184 ~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~ 219 (257)
T PRK07658 184 TLLDDAKKLAKKIAGKSPATTRAVLELLQTTKSSSY 219 (257)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCH
Confidence 999999999999999999999999999987654443
No 18
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=99.98 E-value=4e-32 Score=210.37 Aligned_cols=116 Identities=30% Similarity=0.513 Sum_probs=111.5
Q ss_pred hhchHHHHHHHHcCeeEecCCeEEecccccccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCcc
Q psy9281 34 IYLGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPE 113 (152)
Q Consensus 34 ~a~G~G~~lal~cD~ria~~~a~f~~pe~~~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~ 113 (152)
+|+|||++|+++||+||++++++|++||+++|++|+.++++++++++|+.++++++++|++++++||+++||||+++|++
T Consensus 103 ~a~GgG~~lala~D~ria~~~a~f~~pe~~lG~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 182 (256)
T TIGR02280 103 VAAGAGANLALACDIVLAAESARFIQAFAKIGLIPDSGGTWSLPRLVGRARAMGLAMLGEKLDARTAASWGLIWQVVDDA 182 (256)
T ss_pred eeehHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCcceeeChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHhccccCCC
Q psy9281 114 KLLEETIKLAERIGEHSPLIVTQVKEAVNIDDTEGL 149 (152)
Q Consensus 114 ~l~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l 149 (152)
++.+++.+++++++..||.+++.+|+.++.....++
T Consensus 183 ~l~~~a~~~a~~la~~~~~~~~~~K~~l~~~~~~~~ 218 (256)
T TIGR02280 183 ALMDEAQALAVHLAAQPTRGLALTKRAIQAAATNSL 218 (256)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCH
Confidence 999999999999999999999999999987655443
No 19
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=99.98 E-value=3.4e-32 Score=212.87 Aligned_cols=116 Identities=29% Similarity=0.515 Sum_probs=111.7
Q ss_pred hhchHHHHHHHHcCeeEecCCeEEecccccccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCcc
Q psy9281 34 IYLGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPE 113 (152)
Q Consensus 34 ~a~G~G~~lal~cD~ria~~~a~f~~pe~~~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~ 113 (152)
+|+|+|++|+++||+||++++++|++||+++|++|+++++++|++++|+.++++++++|++++++||+++||||+++|++
T Consensus 114 ~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~llltg~~~~A~eA~~~Glv~~vv~~~ 193 (275)
T PRK09120 114 WCFGGGFSPLVACDLAIAADEAQFGLSEINWGIPPGGGVSKAMADTVGHRDALYYIMTGETFTGRKAAEMGLVNESVPLA 193 (275)
T ss_pred EEechhHHHHHhCCEEEEeCCcEecCCccccCCCCCcchHHHHHHHcCHHHHHHHHhcCCccCHHHHHHcCCcceecCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHhccccCCC
Q psy9281 114 KLLEETIKLAERIGEHSPLIVTQVKEAVNIDDTEGL 149 (152)
Q Consensus 114 ~l~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l 149 (152)
++.+++.+++++++..||.+++.+|+.++.....++
T Consensus 194 ~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~ 229 (275)
T PRK09120 194 QLRARTRELAAKLLEKNPVVLRAAKDGFKRVRELTW 229 (275)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhCCH
Confidence 999999999999999999999999999987655443
No 20
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=99.98 E-value=4.7e-32 Score=210.56 Aligned_cols=141 Identities=46% Similarity=0.676 Sum_probs=124.7
Q ss_pred cccccCCCCCCcchhhhhhhchhhh--------hhhh-------------hhchHHHHHHHHcCeeEecCCeEEeccccc
Q psy9281 5 EKLFILIDYEQKDLYRSKNLKFIQC--------LKIW-------------IYLGGGCELAMMCDIIYAGEKAKFGQPEII 63 (152)
Q Consensus 5 ~k~Fs~~~caG~Dl~~~~~~~~~~~--------~~~~-------------~a~G~G~~lal~cD~ria~~~a~f~~pe~~ 63 (152)
.++|| +|+||+++.+....+. +..+ +|+|||++|+++||+||++++++|++||++
T Consensus 62 g~~F~----aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~ 137 (261)
T PRK08138 62 EKVFA----AGADIKEFATAGAIEMYLRHTERYWEAIAQCPKPVIAAVNGYALGGGCELAMHADIIVAGESASFGQPEIK 137 (261)
T ss_pred CCCee----CCcCHHHHhccchhHHHHHHHHHHHHHHHhCCCCEEEEEccEEEcHHHHHHHhCCEEEecCCCEeeCcccc
Confidence 36899 9999998754221111 1111 999999999999999999999999999999
Q ss_pred ccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q psy9281 64 IGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVKEAVNI 143 (152)
Q Consensus 64 ~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~~l~~~~~~~a~~l~~~~~~a~~~~K~~l~~ 143 (152)
+|++|+++++++|++++|+.++++++++|++++++||+++||||+++|++++.+++.++++++++.||.+++.+|+.++.
T Consensus 138 ~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~ 217 (261)
T PRK08138 138 VGLMPGAGGTQRLVRAVGKFKAMRMALTGCMVPAPEALAIGLVSEVVEDEQTLPRALELAREIARMPPLALAQIKEVVLA 217 (261)
T ss_pred cccCCCCcHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cccCCC
Q psy9281 144 DDTEGL 149 (152)
Q Consensus 144 ~~~~~l 149 (152)
....++
T Consensus 218 ~~~~~~ 223 (261)
T PRK08138 218 GADAPL 223 (261)
T ss_pred HhcCCH
Confidence 654443
No 21
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=99.98 E-value=5.1e-32 Score=210.49 Aligned_cols=139 Identities=26% Similarity=0.400 Sum_probs=123.9
Q ss_pred cccccCCCCCCcchhhhhhhchhh----h-------hhhh-------------hhchHHHHHHHHcCeeEecCCeEEecc
Q psy9281 5 EKLFILIDYEQKDLYRSKNLKFIQ----C-------LKIW-------------IYLGGGCELAMMCDIIYAGEKAKFGQP 60 (152)
Q Consensus 5 ~k~Fs~~~caG~Dl~~~~~~~~~~----~-------~~~~-------------~a~G~G~~lal~cD~ria~~~a~f~~p 60 (152)
+|+|| +|+||+++......+ . +..+ +|+|||++|+++||+||++++++|++|
T Consensus 63 ~~~F~----aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~p 138 (262)
T PRK06144 63 DKAFV----AGTDIAQFRAFSTAEDAVAYERRIDRVLGALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPSARFGFP 138 (262)
T ss_pred CCcee----cCcCHHHHhhccchhHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeehHHHHHHhCCEEEecCCCEeech
Confidence 36899 999999875421110 0 1111 999999999999999999999999999
Q ss_pred ccc-ccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy9281 61 EII-IGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVKE 139 (152)
Q Consensus 61 e~~-~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~~l~~~~~~~a~~l~~~~~~a~~~~K~ 139 (152)
|++ +|++|+++++++|++++|+.++++++++|++++++||+++||||+++|++++.+++.+++++++..||.+++.+|+
T Consensus 139 e~~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~~~~a~~~~K~ 218 (262)
T PRK06144 139 IARTLGNCLSMSNLARLVALLGAARVKDMLFTARLLEAEEALAAGLVNEVVEDAALDARADALAELLAAHAPLTLRATKE 218 (262)
T ss_pred hHHhccCCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHcCCcCeecCHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 997 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccccC
Q psy9281 140 AVNIDDTE 147 (152)
Q Consensus 140 ~l~~~~~~ 147 (152)
.++.....
T Consensus 219 ~l~~~~~~ 226 (262)
T PRK06144 219 ALRRLRRE 226 (262)
T ss_pred HHHHhhhc
Confidence 99876543
No 22
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=99.98 E-value=5e-32 Score=211.29 Aligned_cols=116 Identities=28% Similarity=0.459 Sum_probs=111.6
Q ss_pred hhchHHHHHHHHcCeeEecCCeEEecccccccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCcc
Q psy9281 34 IYLGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPE 113 (152)
Q Consensus 34 ~a~G~G~~lal~cD~ria~~~a~f~~pe~~~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~ 113 (152)
+|+|+|++|+++||+||++++++|++||+++|++|+++++++|++++|.+++++++++|++++++||+++||||+++|++
T Consensus 116 ~a~GgG~~LalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 195 (269)
T PRK06127 116 YCIGGGMGIALACDIRIAAEDSRFGIPAARLGLGYGYDGVKNLVDLVGPSAAKDLFYTARRFDAAEALRIGLVHRVTAAD 195 (269)
T ss_pred EEecHHHHHHHhCCEEEeeCCCEeeCchhhhCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCCCEeeCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHhccccCCC
Q psy9281 114 KLLEETIKLAERIGEHSPLIVTQVKEAVNIDDTEGL 149 (152)
Q Consensus 114 ~l~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l 149 (152)
++.+++.+++++++..||.+++.+|+.++.....++
T Consensus 196 ~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~ 231 (269)
T PRK06127 196 DLETALADYAATIAGNAPLTLRAAKRAIAELLKDEP 231 (269)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCH
Confidence 999999999999999999999999999987655443
No 23
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=99.98 E-value=6.5e-32 Score=209.29 Aligned_cols=137 Identities=32% Similarity=0.428 Sum_probs=121.8
Q ss_pred cccccCCCCCCcchhhhhhhchh---------hhhhhh-------------hhchHHHHHHHHcCeeEecCCeEEecccc
Q psy9281 5 EKLFILIDYEQKDLYRSKNLKFI---------QCLKIW-------------IYLGGGCELAMMCDIIYAGEKAKFGQPEI 62 (152)
Q Consensus 5 ~k~Fs~~~caG~Dl~~~~~~~~~---------~~~~~~-------------~a~G~G~~lal~cD~ria~~~a~f~~pe~ 62 (152)
+|+|| +|+||+++...... ..+..+ +|+|||++|+++||+||++++++|++||+
T Consensus 57 ~~~F~----aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~ 132 (256)
T TIGR03210 57 DKAFC----TGGDQSTHDGGYDGRGTIGLPMEELHSAIRDVPKPVIARVQGYAIGGGNVLVTICDLTIASEKAQFGQVGP 132 (256)
T ss_pred CCcee----cCcChHHHhccccchhHHHHHHHHHHHHHHhCCCCEEEEECCEEehhhHHHHHhCCEEEEeCCCEEecccc
Confidence 37899 99999987431110 011111 99999999999999999999999999999
Q ss_pred cccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q psy9281 63 IIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVKEAVN 142 (152)
Q Consensus 63 ~~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~~l~~~~~~~a~~l~~~~~~a~~~~K~~l~ 142 (152)
++|++|+.+++++|++++|+.+|++++++|++++++||+++||||+++|++++.+++.++++++++.||.+++.+|+.++
T Consensus 133 ~~G~~~~~~~~~~l~~~vG~~~A~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~ 212 (256)
T TIGR03210 133 KVGSVDPGYGTALLARVVGEKKAREIWYLCRRYTAQEALAMGLVNAVVPHDQLDAEVQKWCDEIVEKSPTAIAIAKRSFN 212 (256)
T ss_pred cccccCCccHHHHHHHHhCHHHHHHHHHhCCCcCHHHHHHcCCceeeeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999888788899999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccc
Q psy9281 143 IDD 145 (152)
Q Consensus 143 ~~~ 145 (152)
...
T Consensus 213 ~~~ 215 (256)
T TIGR03210 213 MDT 215 (256)
T ss_pred Hhh
Confidence 653
No 24
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=99.98 E-value=6.4e-32 Score=209.14 Aligned_cols=141 Identities=26% Similarity=0.255 Sum_probs=125.0
Q ss_pred cccccCCCCCCcchhhhhhhchhh-------h--hh--hh----------hhchHHHHHHHHcCeeEecCCeEEeccccc
Q psy9281 5 EKLFILIDYEQKDLYRSKNLKFIQ-------C--LK--IW----------IYLGGGCELAMMCDIIYAGEKAKFGQPEII 63 (152)
Q Consensus 5 ~k~Fs~~~caG~Dl~~~~~~~~~~-------~--~~--~~----------~a~G~G~~lal~cD~ria~~~a~f~~pe~~ 63 (152)
.++|| +|+||+++....... . .. .+ +|+|||++|+++||+||++++++|++||++
T Consensus 57 g~~Fc----aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~ 132 (254)
T PRK08259 57 GGTFC----AGADLKAVGTGRGNRLHPSGDGPMGPSRMRLSKPVIAAVSGYAVAGGLELALWCDLRVAEEDAVFGVFCRR 132 (254)
T ss_pred CCCcc----CCcChHHHhcccchhhhhhhcchhhhHHhcCCCCEEEEECCEEEhHHHHHHHhCCEEEecCCCEecCcccc
Confidence 36899 999999875421110 0 00 11 999999999999999999999999999999
Q ss_pred ccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q psy9281 64 IGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVKEAVNI 143 (152)
Q Consensus 64 ~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~~l~~~~~~~a~~l~~~~~~a~~~~K~~l~~ 143 (152)
+|++|..+++++|++++|+.++++++++|++++++||+++||||+++|++++.+.+.++++++++.||.+++.+|+.++.
T Consensus 133 ~Gl~p~~g~~~~l~~~iG~~~a~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~~~~ 212 (254)
T PRK08259 133 WGVPLIDGGTVRLPRLIGHSRAMDLILTGRPVDADEALAIGLANRVVPKGQARAAAEELAAELAAFPQTCLRADRLSALE 212 (254)
T ss_pred cCCCCCccHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCCEeeChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cccCCC
Q psy9281 144 DDTEGL 149 (152)
Q Consensus 144 ~~~~~l 149 (152)
....++
T Consensus 213 ~~~~~~ 218 (254)
T PRK08259 213 QWGLPE 218 (254)
T ss_pred hhcCCH
Confidence 655444
No 25
>PLN02888 enoyl-CoA hydratase
Probab=99.98 E-value=5.8e-32 Score=210.53 Aligned_cols=140 Identities=27% Similarity=0.364 Sum_probs=124.4
Q ss_pred ccccCCCCCCcchhhhhhhchh-------hhhhhh-------------hhchHHHHHHHHcCeeEecCCeEEeccccccc
Q psy9281 6 KLFILIDYEQKDLYRSKNLKFI-------QCLKIW-------------IYLGGGCELAMMCDIIYAGEKAKFGQPEIIIG 65 (152)
Q Consensus 6 k~Fs~~~caG~Dl~~~~~~~~~-------~~~~~~-------------~a~G~G~~lal~cD~ria~~~a~f~~pe~~~G 65 (152)
|+|| +|+||+++.+.... ..+..+ +|+|||++|+++||+||++++++|++||+++|
T Consensus 65 ~~F~----aG~Dl~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G 140 (265)
T PLN02888 65 RAFC----SGVDLTAAEEVFKGDVKDVETDPVAQMERCRKPIIGAINGFAITAGFEIALACDILVASRGAKFIDTHAKFG 140 (265)
T ss_pred Cccc----CCCCHHHHHhhccchhhHHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEecCCCEecCcccccc
Confidence 6899 99999976431110 111111 99999999999999999999999999999999
Q ss_pred ccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHhccc
Q psy9281 66 TMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVKEAVNIDD 145 (152)
Q Consensus 66 ~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~~l~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~ 145 (152)
++|+.+++++|++++|++++++++++|++++++||+++||||+++|++++.+++.+++++++..+|.+++.+|+.++...
T Consensus 141 l~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~ 220 (265)
T PLN02888 141 IFPSWGLSQKLSRIIGANRAREVSLTAMPLTAETAERWGLVNHVVEESELLKKAREVAEAIIKNNQGMVLRYKSVINDGL 220 (265)
T ss_pred CCCCccHhhHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCccEeeChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred cCCC
Q psy9281 146 TEGL 149 (152)
Q Consensus 146 ~~~l 149 (152)
..++
T Consensus 221 ~~~~ 224 (265)
T PLN02888 221 KLDL 224 (265)
T ss_pred cCCH
Confidence 5543
No 26
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=99.98 E-value=4.9e-32 Score=210.90 Aligned_cols=116 Identities=36% Similarity=0.620 Sum_probs=111.3
Q ss_pred hhchHHHHHHHHcCeeEecCCeEEecccccccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCcc
Q psy9281 34 IYLGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPE 113 (152)
Q Consensus 34 ~a~G~G~~lal~cD~ria~~~a~f~~pe~~~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~ 113 (152)
+|+|+|++|+++||+||++++++|++||+++|++|++++++++++++|..++++++++|++++++||+++||||+++|++
T Consensus 113 ~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 192 (266)
T PRK09245 113 PAIGAGCDLACMCDIRIASETARFAESFVKLGLIPGDGGAWLLPRIIGMARAAEMAFTGDAIDAATALEWGLVSRVVPAD 192 (266)
T ss_pred EeecHHHHHHHhCCEEEecCCCEEcccccccCcCCCcchhhhHHHHhhHHHHHHHHHcCCCcCHHHHHHcCCcceecCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHhccccCCC
Q psy9281 114 KLLEETIKLAERIGEHSPLIVTQVKEAVNIDDTEGL 149 (152)
Q Consensus 114 ~l~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l 149 (152)
++.+++.++++++++.||.+++.+|+.++.....++
T Consensus 193 ~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~ 228 (266)
T PRK09245 193 QLLPAARALAERIAANPPHALRLTKRLLREGQHASL 228 (266)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCH
Confidence 999999999999999999999999999987655443
No 27
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=99.98 E-value=4.8e-32 Score=209.86 Aligned_cols=116 Identities=30% Similarity=0.370 Sum_probs=111.7
Q ss_pred hhchHHHHHHHHcCeeEecCCeEEecccccccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCcc
Q psy9281 34 IYLGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPE 113 (152)
Q Consensus 34 ~a~G~G~~lal~cD~ria~~~a~f~~pe~~~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~ 113 (152)
+|+|||++|+++||+||++++++|++||+++|++|+.++++++++++|+.++++++++|++++++||+++||||+++|++
T Consensus 108 ~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~~~sa~eA~~~Glv~~vv~~~ 187 (255)
T PRK07260 108 AVAGAAANMAVAADFCIASTKTKFIQAFVGVGLAPDAGGLFLLTRAIGLNRATHLAMTGEALTAEKALEYGFVYRVAESE 187 (255)
T ss_pred eeehhhHHHHHhCCEEEEeCCCEEechHhhcCCCCCCchhhhhHHhhCHHHHHHHHHhCCccCHHHHHHcCCcceecCHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHhccccCCC
Q psy9281 114 KLLEETIKLAERIGEHSPLIVTQVKEAVNIDDTEGL 149 (152)
Q Consensus 114 ~l~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l 149 (152)
++.+.+.++++++++.||.+++.+|+.++.....++
T Consensus 188 ~l~~~a~~~a~~la~~~~~a~~~~K~~~~~~~~~~~ 223 (255)
T PRK07260 188 KLEKTCEQLLKKLRRGSSNSYAAIKSLVWESFFKGW 223 (255)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCH
Confidence 999999999999999999999999999988765544
No 28
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=99.98 E-value=7e-32 Score=209.77 Aligned_cols=116 Identities=33% Similarity=0.481 Sum_probs=111.2
Q ss_pred hhchHHHHHHHHcCeeEecCCeEEecccccccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCcc
Q psy9281 34 IYLGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPE 113 (152)
Q Consensus 34 ~a~G~G~~lal~cD~ria~~~a~f~~pe~~~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~ 113 (152)
+|+|||++|+++||+||++++++|++||+++|++|+++++++|++++|++++++++++|++++++||+++||||+++|++
T Consensus 110 ~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 189 (263)
T PRK07799 110 PAIAGGTEILQGTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQIPYTVACDLLLTGRHITAAEAKEIGLIGHVVPDG 189 (263)
T ss_pred eEeccHHHHHHhCCEEEecCCCEecCcccccCcCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccEecCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHhccccCCC
Q psy9281 114 KLLEETIKLAERIGEHSPLIVTQVKEAVNIDDTEGL 149 (152)
Q Consensus 114 ~l~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l 149 (152)
++.+++.+++++++..||.+++.+|+.++.....++
T Consensus 190 ~l~~~a~~~a~~~~~~~~~a~~~~K~~l~~~~~~~l 225 (263)
T PRK07799 190 QALDKALELAELINANGPLAVQAILRTIRETEGMHE 225 (263)
T ss_pred hHHHHHHHHHHHHHhcChHHHHHHHHHHHHhhcCCH
Confidence 999999999999999999999999999987654443
No 29
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=99.97 E-value=8.9e-32 Score=208.83 Aligned_cols=112 Identities=34% Similarity=0.585 Sum_probs=109.0
Q ss_pred hhchHHHHHHHHcCeeEecCCeEEecccccccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCcc
Q psy9281 34 IYLGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPE 113 (152)
Q Consensus 34 ~a~G~G~~lal~cD~ria~~~a~f~~pe~~~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~ 113 (152)
+|+|||++|+++||+||++++++|++||+++|++|+.+++++|++++|++++++++++|++++++||+++||||+++|++
T Consensus 107 ~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~~~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 186 (259)
T TIGR01929 107 YAIGGGHVLHVVCDLTIAAENARFGQTGPKVGSFDGGYGSSYLARIVGQKKAREIWFLCRQYDAEQALDMGLVNTVVPLA 186 (259)
T ss_pred EEehHHHHHHHhCCEEEecCCCEecCcccccccCCCccHHHHHHHHhHHHHHHHHHHhCCccCHHHHHHcCCcccccCHH
Confidence 99999999999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHhccc
Q psy9281 114 KLLEETIKLAERIGEHSPLIVTQVKEAVNIDD 145 (152)
Q Consensus 114 ~l~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~ 145 (152)
++.+++.++++++++.||.+++.+|+.++...
T Consensus 187 ~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~ 218 (259)
T TIGR01929 187 DLEKETVRWCREILQKSPMAIRMLKAALNADC 218 (259)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999998753
No 30
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=99.97 E-value=7.3e-32 Score=210.56 Aligned_cols=116 Identities=33% Similarity=0.570 Sum_probs=111.0
Q ss_pred hhchHHHHHHHHcCeeEecCCeEEecccccccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCc-
Q psy9281 34 IYLGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPP- 112 (152)
Q Consensus 34 ~a~G~G~~lal~cD~ria~~~a~f~~pe~~~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~- 112 (152)
+|+|||++|+++||+||++++++|++||+++|++|+.+++++|++++|++++++++++|++++++||+++||||+++|+
T Consensus 119 ~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~ 198 (272)
T PRK06142 119 WCIGGGVDLISACDMRYASADAKFSVREVDLGMVADVGSLQRLPRIIGDGHLRELALTGRDIDAAEAEKIGLVNRVYDDA 198 (272)
T ss_pred ccccchHHHHHhCCEEEecCCCeecchhhhhCCCCCchHHHHHHHHhCHHHHHHHHHhCCCcCHHHHHHcCCccEecCCH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHhccccCCC
Q psy9281 113 EKLLEETIKLAERIGEHSPLIVTQVKEAVNIDDTEGL 149 (152)
Q Consensus 113 ~~l~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l 149 (152)
+++.+++.+++++++..||.+++.+|+.+++....++
T Consensus 199 ~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~l 235 (272)
T PRK06142 199 DALLAAAHATAREIAAKSPLAVRGTKEVLDYMRDHRV 235 (272)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCH
Confidence 8899999999999999999999999999987655444
No 31
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=99.97 E-value=8.9e-32 Score=209.02 Aligned_cols=116 Identities=30% Similarity=0.521 Sum_probs=111.4
Q ss_pred hhchHHHHHHHHcCeeEecCCeEEecccccccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCcc
Q psy9281 34 IYLGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPE 113 (152)
Q Consensus 34 ~a~G~G~~lal~cD~ria~~~a~f~~pe~~~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~ 113 (152)
+|+|||++|+++||+||++++++|++||+++|++|+.++++++++++|..++++++++|++++++||+++||||+++|++
T Consensus 109 ~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 188 (262)
T PRK08140 109 VAAGAGANLALACDIVLAARSASFIQAFVKIGLVPDSGGTWFLPRLVGMARALGLALLGEKLSAEQAEQWGLIWRVVDDA 188 (262)
T ss_pred eeehhHHHHHHhCCEEEecCCCEEeccccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHcCCccEeeChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHhccccCCC
Q psy9281 114 KLLEETIKLAERIGEHSPLIVTQVKEAVNIDDTEGL 149 (152)
Q Consensus 114 ~l~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l 149 (152)
++.+++.+++++++..||.+++.+|+.++.....++
T Consensus 189 ~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~ 224 (262)
T PRK08140 189 ALADEAQQLAAHLATQPTRGLALIKQAMNASATNTL 224 (262)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhCCH
Confidence 999999999999999999999999999987655543
No 32
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=99.97 E-value=1.1e-31 Score=207.24 Aligned_cols=142 Identities=22% Similarity=0.307 Sum_probs=126.2
Q ss_pred cccccCCCCCCcchhhhhhhchh-------hhhhhh-------------hhchHHHHHHHHcCeeEecCCeEEecccccc
Q psy9281 5 EKLFILIDYEQKDLYRSKNLKFI-------QCLKIW-------------IYLGGGCELAMMCDIIYAGEKAKFGQPEIII 64 (152)
Q Consensus 5 ~k~Fs~~~caG~Dl~~~~~~~~~-------~~~~~~-------------~a~G~G~~lal~cD~ria~~~a~f~~pe~~~ 64 (152)
.|+|| +|+|++++...... ..+..+ +|+|||++|+++||+||++++++|++||+++
T Consensus 59 g~~F~----aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~ 134 (249)
T PRK07110 59 PNYFA----TGGTQEGLLSLQTGKGTFTEANLYSLALNCPIPVIAAMQGHAIGGGLVLGLYADIVVLSRESVYTANFMKY 134 (249)
T ss_pred CCCee----CCcChHHHhhccchhhhHhhHHHHHHHHcCCCCEEEEecCceechHHHHHHhCCEEEEeCCCEecCchhcc
Confidence 46899 99999987542211 111111 9999999999999999999999999999999
Q ss_pred cccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc
Q psy9281 65 GTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVKEAVNID 144 (152)
Q Consensus 65 G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~~l~~~~~~~a~~l~~~~~~a~~~~K~~l~~~ 144 (152)
|++|+.++++++++++|+.++++++++|++++++||+++|||++++|++++.+++.++++++++.||.+++.+|+.++..
T Consensus 135 Gl~p~~g~~~~l~~~~g~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~ 214 (249)
T PRK07110 135 GFTPGMGATAILPEKLGLALGQEMLLTARYYRGAELKKRGVPFPVLPRAEVLEKALELARSLAEKPRHSLVLLKDHLVAD 214 (249)
T ss_pred CCCCCchHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCeEEeChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred ccCCCC
Q psy9281 145 DTEGLN 150 (152)
Q Consensus 145 ~~~~l~ 150 (152)
...+++
T Consensus 215 ~~~~l~ 220 (249)
T PRK07110 215 RRRRLP 220 (249)
T ss_pred hhccHH
Confidence 655543
No 33
>PRK08139 enoyl-CoA hydratase; Validated
Probab=99.97 E-value=1.3e-31 Score=208.62 Aligned_cols=115 Identities=32% Similarity=0.484 Sum_probs=108.8
Q ss_pred hhchHHHHHHHHcCeeEecCCeEEecccccccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCcc
Q psy9281 34 IYLGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPE 113 (152)
Q Consensus 34 ~a~G~G~~lal~cD~ria~~~a~f~~pe~~~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~ 113 (152)
+|+|||++|+++||+||++++++|++||+++|++|+++ .++|++++|..++++++++|++++++||+++||||+++|++
T Consensus 114 ~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~-~~~l~r~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~ 192 (266)
T PRK08139 114 IATAAGCQLVASCDLAVAADTARFAVPGVNIGLFCSTP-MVALSRNVPRKQAMEMLLTGEFIDAATAREWGLVNRVVPAD 192 (266)
T ss_pred eeeHHHHHHHHhCCEEEEeCCCEEeCcccCcCCCCCcc-HHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCccEeeChh
Confidence 99999999999999999999999999999999998775 46799999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHhccccCCC
Q psy9281 114 KLLEETIKLAERIGEHSPLIVTQVKEAVNIDDTEGL 149 (152)
Q Consensus 114 ~l~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l 149 (152)
++.+.+.+++++++..||.+++.+|+.++.....++
T Consensus 193 ~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~ 228 (266)
T PRK08139 193 ALDAAVARLAAVIAAKSPAAVRIGKEAFYRQAEMPL 228 (266)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCH
Confidence 999999999999999999999999999987655443
No 34
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=99.97 E-value=7.1e-32 Score=207.45 Aligned_cols=139 Identities=41% Similarity=0.603 Sum_probs=125.0
Q ss_pred cccccCCCCCCcchhhhhhhchhhh----------hhhh-------------hhchHHHHHHHHcCeeEecCCeEEeccc
Q psy9281 5 EKLFILIDYEQKDLYRSKNLKFIQC----------LKIW-------------IYLGGGCELAMMCDIIYAGEKAKFGQPE 61 (152)
Q Consensus 5 ~k~Fs~~~caG~Dl~~~~~~~~~~~----------~~~~-------------~a~G~G~~lal~cD~ria~~~a~f~~pe 61 (152)
+++|| +|.|++++.+...... +..+ +|+|+|++|+++||+||++++++|++||
T Consensus 52 ~~~F~----~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe 127 (245)
T PF00378_consen 52 GKAFC----AGADLKEFLNSDEEEAREFFRRFQELLSRLANFPKPTIAAVNGHAVGGGFELALACDFRIAAEDAKFGFPE 127 (245)
T ss_dssp TSESB----ESB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEEESSEEETHHHHHHHHSSEEEEETTTEEETGG
T ss_pred ccccc----cccchhhhhccccccccccchhhccccccchhhhhheeecccccccccccccccccceEEeecccceeeee
Confidence 57899 9999999877621111 1111 9999999999999999999999999999
Q ss_pred ccccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy9281 62 IIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVKEAV 141 (152)
Q Consensus 62 ~~~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~~l~~~~~~~a~~l~~~~~~a~~~~K~~l 141 (152)
+++|++|+.+++++|++++|++++++++++|++++++||+++||||+++|++++.+.+.+++++++..|+.+++.+|+.+
T Consensus 128 ~~~G~~p~~g~~~~l~r~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~~ 207 (245)
T PF00378_consen 128 VRLGIFPGAGGTFRLPRLIGPSRARELLLTGEPISAEEALELGLVDEVVPDEELDEEALELAKRLAAKPPSALRATKKAL 207 (245)
T ss_dssp GGGTSSSTSTHHHHHHHHHHHHHHHHHHHHTCEEEHHHHHHTTSSSEEESGGGHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred cccCcccccccccccceeeecccccccccccccchhHHHHhhcceeEEcCchhhhHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccC
Q psy9281 142 NIDDTE 147 (152)
Q Consensus 142 ~~~~~~ 147 (152)
++....
T Consensus 208 ~~~~~~ 213 (245)
T PF00378_consen 208 NRALEQ 213 (245)
T ss_dssp HHHHHS
T ss_pred HHHHHh
Confidence 986544
No 35
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=99.97 E-value=1.1e-31 Score=208.35 Aligned_cols=115 Identities=21% Similarity=0.281 Sum_probs=109.9
Q ss_pred hhchHHHHHHHHcCeeEecCCeEEecccccccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCcc
Q psy9281 34 IYLGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPE 113 (152)
Q Consensus 34 ~a~G~G~~lal~cD~ria~~~a~f~~pe~~~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~ 113 (152)
+|+|||++|+++||+||++++++|++||+++|++|+.+++++|++++|+.++++++++|++++++||+++||||+++ ++
T Consensus 108 ~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~vv-~~ 186 (260)
T PRK07659 108 PAAGLGLSIALTADYVIADISAKLAMNFIGIGLIPDGGGHFFLQKRVGENKAKQIIWEGKKLSATEALDLGLIDEVI-GG 186 (260)
T ss_pred ceecHHHHHHHhCCEEEEcCCCEEcCchhhcCCCCCCchhhhHHHhcCHHHHHHHHHhCCccCHHHHHHcCChHHHh-hh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999 78
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHhccccCCC
Q psy9281 114 KLLEETIKLAERIGEHSPLIVTQVKEAVNIDDTEGL 149 (152)
Q Consensus 114 ~l~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l 149 (152)
++.+++.++++++++.||.+++.+|+.++.....++
T Consensus 187 ~~~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l 222 (260)
T PRK07659 187 DFQTAAKQKISEWLQKPLKAMIETKQIYCELNRSQL 222 (260)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCH
Confidence 899999999999999999999999999987655444
No 36
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=99.97 E-value=2.3e-31 Score=206.47 Aligned_cols=116 Identities=29% Similarity=0.497 Sum_probs=111.1
Q ss_pred hhchHHHHHHHHcCeeEecCCeEEecccccccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCcc
Q psy9281 34 IYLGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPE 113 (152)
Q Consensus 34 ~a~G~G~~lal~cD~ria~~~a~f~~pe~~~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~ 113 (152)
+|+|+|++|+++||+||++++++|++||+++|++|++++++++++++|++++++++++|++++++||+++||||+++|++
T Consensus 108 ~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 187 (260)
T PRK07511 108 AAAGAGFSLALACDLLVAARDAKFVMAYVKVGLTPDGGGSWFLARALPRQLATELLLEGKPISAERLHALGVVNRLAEPG 187 (260)
T ss_pred eeehHHHHHHHhCCEEEeeCCCEEeccccccCcCCCchHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCccEeeCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHhccccCCC
Q psy9281 114 KLLEETIKLAERIGEHSPLIVTQVKEAVNIDDTEGL 149 (152)
Q Consensus 114 ~l~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l 149 (152)
++.+++.++++++++.||.++..+|+.++.....++
T Consensus 188 ~~~~~a~~~a~~l~~~~~~~~~~~K~~l~~~~~~~~ 223 (260)
T PRK07511 188 QALAEALALADQLAAGSPNALARIKSLIADAPEATL 223 (260)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCH
Confidence 999999999999999999999999999987655443
No 37
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=99.97 E-value=1.4e-31 Score=208.31 Aligned_cols=115 Identities=23% Similarity=0.382 Sum_probs=109.1
Q ss_pred hhchHHHHHHHHcCeeEecCCeEEecccccccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCcc
Q psy9281 34 IYLGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPE 113 (152)
Q Consensus 34 ~a~G~G~~lal~cD~ria~~~a~f~~pe~~~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~ 113 (152)
+|+|||++|+++||+||++++++|++||+++|++|++++.. +++++|.+++++++++|++++++||+++||||+++|++
T Consensus 111 ~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gi~p~~~~~~-l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 189 (265)
T PRK05674 111 AAFGGALGLISCCDMAIGADDAQFCLSEVRIGLAPAVISPF-VVKAIGERAARRYALTAERFDGRRARELGLLAESYPAA 189 (265)
T ss_pred EEEechhhHhhhcCEEEEeCCCEEeCcccccCCCcchhHHH-HHHHhCHHHHHHHHHhCcccCHHHHHHCCCcceecCHH
Confidence 99999999999999999999999999999999999877654 99999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHhccccCCC
Q psy9281 114 KLLEETIKLAERIGEHSPLIVTQVKEAVNIDDTEGL 149 (152)
Q Consensus 114 ~l~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l 149 (152)
++.+++.+++++++..||.+++.+|+.++.....++
T Consensus 190 ~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~ 225 (265)
T PRK05674 190 ELEAQVEAWIANLLLNSPQALRASKDLLREVGDGEL 225 (265)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhccCh
Confidence 999999999999999999999999999988765554
No 38
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=99.97 E-value=1.6e-31 Score=209.00 Aligned_cols=116 Identities=38% Similarity=0.574 Sum_probs=110.3
Q ss_pred hhchHHHHHHHHcCeeEecCCeEEecccccccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCc-
Q psy9281 34 IYLGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPP- 112 (152)
Q Consensus 34 ~a~G~G~~lal~cD~ria~~~a~f~~pe~~~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~- 112 (152)
+|+|||++|+++||+||++++++|++||+++|++|+.+++++|++++|.+++++++++|++++++||+++||||+++|+
T Consensus 121 ~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~ 200 (275)
T PLN02664 121 ACIGGGVDIVTACDIRYCSEDAFFSVKEVDLAITADLGTLQRLPSIVGYGNAMELALTGRRFSGSEAKELGLVSRVFGSK 200 (275)
T ss_pred ccccchHHHHHhCCEEEecCCCEeccHHHhhCCCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCCceeeCCh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHhccccCCC
Q psy9281 113 EKLLEETIKLAERIGEHSPLIVTQVKEAVNIDDTEGL 149 (152)
Q Consensus 113 ~~l~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l 149 (152)
+++.+.+.+++++++..||.+++.+|+.++.....++
T Consensus 201 ~~l~~~~~~~a~~ia~~~p~a~~~~K~~l~~~~~~~~ 237 (275)
T PLN02664 201 EDLDEGVRLIAEGIAAKSPLAVTGTKAVLLRSRELSV 237 (275)
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCH
Confidence 8899999999999999999999999999987654433
No 39
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=99.97 E-value=1.6e-31 Score=207.09 Aligned_cols=140 Identities=29% Similarity=0.448 Sum_probs=125.1
Q ss_pred ccccCCCCCCcchhhhhhhchh--hh-------hhhh-------------hhchHHHHHHHHcCeeEecCCeEEeccccc
Q psy9281 6 KLFILIDYEQKDLYRSKNLKFI--QC-------LKIW-------------IYLGGGCELAMMCDIIYAGEKAKFGQPEII 63 (152)
Q Consensus 6 k~Fs~~~caG~Dl~~~~~~~~~--~~-------~~~~-------------~a~G~G~~lal~cD~ria~~~a~f~~pe~~ 63 (152)
++|| +|+||+++...... .. +..+ +|+|||++|+++||+||++++++|++||++
T Consensus 60 ~~F~----aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~ 135 (259)
T PRK06688 60 RAFS----AGGDIKDFPKAPPKPPDELAPVNRFLRAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAKFSLPFAK 135 (259)
T ss_pred CCcc----CccCHHHHhccCcchHHHHHHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEecCchhh
Confidence 6899 99999987543211 11 1111 999999999999999999999999999999
Q ss_pred ccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q psy9281 64 IGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVKEAVNI 143 (152)
Q Consensus 64 ~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~~l~~~~~~~a~~l~~~~~~a~~~~K~~l~~ 143 (152)
+|++|++++++++++++|+.++++++++|++++++||+++||||+++|++++.+++.+++++++..||.+++.+|+.++.
T Consensus 136 ~G~~p~~g~~~~l~~~~G~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~i~~~~~~a~~~~K~~l~~ 215 (259)
T PRK06688 136 LGLCPDAGGSALLPRLIGRARAAEMLLLGEPLSAEEALRIGLVNRVVPAAELDAEADAQAAKLAAGPASALRYTKRAINA 215 (259)
T ss_pred cCCCCCcchhhHHHHHhhHHHHHHHHHhCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cccCCC
Q psy9281 144 DDTEGL 149 (152)
Q Consensus 144 ~~~~~l 149 (152)
....++
T Consensus 216 ~~~~~~ 221 (259)
T PRK06688 216 ATLTEL 221 (259)
T ss_pred hhhCCH
Confidence 655543
No 40
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=99.97 E-value=2.8e-31 Score=205.18 Aligned_cols=136 Identities=24% Similarity=0.371 Sum_probs=122.3
Q ss_pred cccccCCCCCCcchhhhhhhch-h----hh----hhhh-------------hhchHHHHHHHHcCeeEecCCeEEecccc
Q psy9281 5 EKLFILIDYEQKDLYRSKNLKF-I----QC----LKIW-------------IYLGGGCELAMMCDIIYAGEKAKFGQPEI 62 (152)
Q Consensus 5 ~k~Fs~~~caG~Dl~~~~~~~~-~----~~----~~~~-------------~a~G~G~~lal~cD~ria~~~a~f~~pe~ 62 (152)
.++|| +|+||+++..... . .. +..+ +|+|||++|+++||+||++++++|++||+
T Consensus 60 g~~Fc----aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~la~acD~ria~~~a~f~~pe~ 135 (251)
T PRK06023 60 EGCFS----AGNDMQDFLAAAMGGTSFGSEILDFLIALAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFASPRSLFRTPFV 135 (251)
T ss_pred CCCee----cCcCHHHHhhccccchhhHHHHHHHHHHHHhCCCCEEEEeCCceecHHHHHHHhCCEEEEeCCCEecCccc
Confidence 36899 9999998754211 0 01 1111 99999999999999999999999999999
Q ss_pred cccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q psy9281 63 IIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVKEAVN 142 (152)
Q Consensus 63 ~~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~~l~~~~~~~a~~l~~~~~~a~~~~K~~l~ 142 (152)
++|++|++++++++++++|+.++++++++|++++++||+++||||+++|++++.+++.+++++++..||.+++.+|+.++
T Consensus 136 ~~Gl~p~~g~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~ 215 (251)
T PRK06023 136 DLALVPEAGSSLLAPRLMGHQRAFALLALGEGFSAEAAQEAGLIWKIVDEEAVEAETLKAAEELAAKPPQALQIARDLMR 215 (251)
T ss_pred ccCCCCCchHHHHHHHHHhHHHHHHHHHhCCCCCHHHHHHcCCcceeeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cc
Q psy9281 143 ID 144 (152)
Q Consensus 143 ~~ 144 (152)
..
T Consensus 216 ~~ 217 (251)
T PRK06023 216 GP 217 (251)
T ss_pred hc
Confidence 64
No 41
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=99.97 E-value=2.5e-31 Score=207.26 Aligned_cols=111 Identities=23% Similarity=0.277 Sum_probs=108.8
Q ss_pred hhchHHHHHHHHcCeeEecCCeEEecccccccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCcc
Q psy9281 34 IYLGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPE 113 (152)
Q Consensus 34 ~a~G~G~~lal~cD~ria~~~a~f~~pe~~~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~ 113 (152)
+|+|||++|+++||+||++++++|++||+++|++|+.+++++|++++|++++++++++|++++++||+++||||+++|++
T Consensus 116 ~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 195 (268)
T PRK07327 116 PAVGAGLVAALLADISIAAKDARIIDGHTRLGVAAGDHAAIVWPLLCGMAKAKYYLLLCEPVSGEEAERIGLVSLAVDDD 195 (268)
T ss_pred eeeehhhHHHHhCCEEEecCCCEEeCcccccCCCCCcchhhHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCcceecCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc
Q psy9281 114 KLLEETIKLAERIGEHSPLIVTQVKEAVNID 144 (152)
Q Consensus 114 ~l~~~~~~~a~~l~~~~~~a~~~~K~~l~~~ 144 (152)
++++++.++++++++.||.+++.+|+.++..
T Consensus 196 ~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~ 226 (268)
T PRK07327 196 ELLPKALEVAERLAAGSQTAIRWTKYALNNW 226 (268)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999864
No 42
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=99.97 E-value=3.3e-31 Score=205.81 Aligned_cols=115 Identities=29% Similarity=0.381 Sum_probs=108.9
Q ss_pred hhchHHHHHHHHcCeeEecCCeEEecccccccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCcc
Q psy9281 34 IYLGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPE 113 (152)
Q Consensus 34 ~a~G~G~~lal~cD~ria~~~a~f~~pe~~~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~ 113 (152)
+|+|||++|+++||+||++++++|++||+++|++|++++.+ +++++|++++++++++|++++++||+++||||+++|++
T Consensus 109 ~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~-l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 187 (262)
T PRK05995 109 DAYAGGMGLVAACDIAVAADHAVFCLSEVRLGLIPATISPY-VIRAMGERAARRYFLTAERFDAAEALRLGLVHEVVPAE 187 (262)
T ss_pred EEEhhHHHHHHhCCEEEeeCCCEEeCcccccccCccchHHH-HHHHhCHHHHHHHHHcCCccCHHHHHHcCCCCeecCHH
Confidence 99999999999999999999999999999999999887665 89999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHhccccCCC
Q psy9281 114 KLLEETIKLAERIGEHSPLIVTQVKEAVNIDDTEGL 149 (152)
Q Consensus 114 ~l~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l 149 (152)
++.+++.++++++++.||.+++.+|+.++.....++
T Consensus 188 ~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~ 223 (262)
T PRK05995 188 ALDAKVDELLAALVANSPQAVRAGKRLVRDVAGRPI 223 (262)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCh
Confidence 999999999999999999999999999987655443
No 43
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=99.97 E-value=3e-31 Score=207.67 Aligned_cols=116 Identities=27% Similarity=0.369 Sum_probs=110.5
Q ss_pred hhchHHHHHHHHcCeeEecCCeEEecccccccccC-CccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCc
Q psy9281 34 IYLGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMP-GAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPP 112 (152)
Q Consensus 34 ~a~G~G~~lal~cD~ria~~~a~f~~pe~~~G~~p-~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~ 112 (152)
+|+|||++|+++||+||++++++|++||+++|++| +++++++|++++|..++++++++|++++++||+++||||+++|+
T Consensus 123 ~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~ 202 (277)
T PRK08258 123 VCAGAGAILAMASDLRLGTPSAKTAFLFTRVGLAGADMGACALLPRIIGQGRASELLYTGRSMSAEEGERWGFFNRLVEP 202 (277)
T ss_pred eeehHHHHHHHhCCEEEecCCCEEeccccccCcCCCCchHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCCcEecCH
Confidence 99999999999999999999999999999999985 67889999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHhccccCCC
Q psy9281 113 EKLLEETIKLAERIGEHSPLIVTQVKEAVNIDDTEGL 149 (152)
Q Consensus 113 ~~l~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l 149 (152)
+++.+++.+++++++..||.+++.+|+.++.....++
T Consensus 203 ~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l 239 (277)
T PRK08258 203 EELLAEAQALARRLAAGPTFAHGMTKTMLHQEWDMGL 239 (277)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCCH
Confidence 9999999999999999999999999999987665544
No 44
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=99.97 E-value=3.7e-31 Score=205.57 Aligned_cols=136 Identities=26% Similarity=0.391 Sum_probs=121.9
Q ss_pred ccccCCCCCCcchhhhhhhch--h---hh----hhhh-------------hhchHHHHHHHHcCeeEecCCeEEeccccc
Q psy9281 6 KLFILIDYEQKDLYRSKNLKF--I---QC----LKIW-------------IYLGGGCELAMMCDIIYAGEKAKFGQPEII 63 (152)
Q Consensus 6 k~Fs~~~caG~Dl~~~~~~~~--~---~~----~~~~-------------~a~G~G~~lal~cD~ria~~~a~f~~pe~~ 63 (152)
|+|| +|.||+++..... . .. +..+ +|+|||++|+++||+||++++++|++||++
T Consensus 60 ~~Fc----aG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~ 135 (261)
T PRK11423 60 KVWS----AGHDIHELPSGGRDPLSYDDPLRQILRMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAASTSTFAMTPAN 135 (261)
T ss_pred CeeE----CCcCHHHHhhccccHHHHHHHHHHHHHHHHhCCCCEEEEEecEEechHHHHHHhCCEEEecCCCEecCchhh
Confidence 7899 9999998743211 0 11 1111 999999999999999999999999999999
Q ss_pred ccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q psy9281 64 IGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVKEAVNI 143 (152)
Q Consensus 64 ~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~~l~~~~~~~a~~l~~~~~~a~~~~K~~l~~ 143 (152)
+|++|+.++++++++++|++++++++++|++++++||+++||||+++|++++++.+.+++++++..||.+++.+|+.++.
T Consensus 136 ~Gl~~~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~~~~ 215 (261)
T PRK11423 136 LGVPYNLSGILNFTNDAGFHIVKEMFFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEKAPLAIAVIKEQLRV 215 (261)
T ss_pred cCCCCCccHHHHHHHHhHHHHHHHHHHcCCCcCHHHHHHcCCcCcccCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred cc
Q psy9281 144 DD 145 (152)
Q Consensus 144 ~~ 145 (152)
..
T Consensus 216 ~~ 217 (261)
T PRK11423 216 LG 217 (261)
T ss_pred hc
Confidence 43
No 45
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=99.97 E-value=4.5e-31 Score=206.29 Aligned_cols=112 Identities=34% Similarity=0.567 Sum_probs=108.8
Q ss_pred hhchHHHHHHHHcCeeEecCCeEEecccccccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCcc
Q psy9281 34 IYLGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPE 113 (152)
Q Consensus 34 ~a~G~G~~lal~cD~ria~~~a~f~~pe~~~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~ 113 (152)
+|+|||++|+++||+||++++++|++||+++|++|+.+++.+|++++|++++++++++|++++++||+++||||+++|++
T Consensus 117 ~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~~~~l~~~vG~~~a~~l~ltg~~~~A~eA~~~GLv~~vv~~~ 196 (273)
T PRK07396 117 YAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGYGASYLARIVGQKKAREIWFLCRQYDAQEALDMGLVNTVVPLA 196 (273)
T ss_pred EEehHHHHHHHhCCEEEeeCCcEEecccccccccCCchHHHHHHHHhhHHHHHHHHHhCCCcCHHHHHHcCCcCeecCHH
Confidence 99999999999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHhccc
Q psy9281 114 KLLEETIKLAERIGEHSPLIVTQVKEAVNIDD 145 (152)
Q Consensus 114 ~l~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~ 145 (152)
++.+++.+++++++..||.+++.+|+.++...
T Consensus 197 ~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~ 228 (273)
T PRK07396 197 DLEKETVRWCREMLQNSPMALRCLKAALNADC 228 (273)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999998653
No 46
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=99.97 E-value=1.9e-31 Score=205.95 Aligned_cols=135 Identities=25% Similarity=0.281 Sum_probs=121.1
Q ss_pred ccccCCCCCCcchhhhhhhch---hhh-------hhhh-------------hhchHHHHHHHHcCeeEecCCeEEecccc
Q psy9281 6 KLFILIDYEQKDLYRSKNLKF---IQC-------LKIW-------------IYLGGGCELAMMCDIIYAGEKAKFGQPEI 62 (152)
Q Consensus 6 k~Fs~~~caG~Dl~~~~~~~~---~~~-------~~~~-------------~a~G~G~~lal~cD~ria~~~a~f~~pe~ 62 (152)
|+|| +|+||+++.+... ... +..+ +|+|||++|+++||+||++++++|++||+
T Consensus 58 ~~F~----aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~ 133 (249)
T PRK05870 58 KAFC----AGADLTALGAAPGRPAEDGLRRIYDGFLAVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPKALFDARFQ 133 (249)
T ss_pred CCee----cCcChHHHhcccccchHHHHHHHHHHHHHHHhCCCCEEEEECCEeEchhHHHHHhCCEEEEcCCCEEeCccc
Confidence 6899 9999998754311 111 1111 99999999999999999999999999999
Q ss_pred cccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q psy9281 63 IIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVKEAVN 142 (152)
Q Consensus 63 ~~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~~l~~~~~~~a~~l~~~~~~a~~~~K~~l~ 142 (152)
++|++|++++++++++++|++++++++++|++++++||+++||||+++ +++.+++.+++++++..||.+++.+|+.++
T Consensus 134 ~~G~~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv--~~l~~~a~~~a~~la~~~~~a~~~~K~~~~ 211 (249)
T PRK05870 134 KLGLHPGGGATWMLQRAVGPQVARAALLFGMRFDAEAAVRHGLALMVA--DDPVAAALELAAGPAAAPRELVLATKASMR 211 (249)
T ss_pred ccCcCCCCcceeeHHhhhCHHHHHHHHHhCCccCHHHHHHcCCHHHHH--hhHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999 689999999999999999999999999998
Q ss_pred cccc
Q psy9281 143 IDDT 146 (152)
Q Consensus 143 ~~~~ 146 (152)
....
T Consensus 212 ~~~~ 215 (249)
T PRK05870 212 ATAS 215 (249)
T ss_pred hccc
Confidence 7654
No 47
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=99.97 E-value=4.4e-31 Score=205.56 Aligned_cols=116 Identities=28% Similarity=0.413 Sum_probs=111.1
Q ss_pred hhchHHHHHHHHcCeeEecCCeEEecccccccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCcc
Q psy9281 34 IYLGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPE 113 (152)
Q Consensus 34 ~a~G~G~~lal~cD~ria~~~a~f~~pe~~~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~ 113 (152)
+|+|||++|+++||+||++++++|++||+++|++|++++++++++++|+.++++++++|++++++||+++|||++++|++
T Consensus 113 ~a~GgG~~lalacD~~ia~~~a~f~~~e~~lG~~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 192 (266)
T PRK05981 113 PAAGVGMSFALMGDLILCARSAYFLQAFRRIGLVPDGGSTWLLPRLVGKARAMELSLLGEKLPAETALQWGLVNRVVDDA 192 (266)
T ss_pred EeehHHHHHHHhCCEEEecCCCEEechHhhcCCCCCccHHHHHHHHhHHHHHHHHHHhCCCcCHHHHHHcCCceEeeCHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHhccccCCC
Q psy9281 114 KLLEETIKLAERIGEHSPLIVTQVKEAVNIDDTEGL 149 (152)
Q Consensus 114 ~l~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l 149 (152)
++.+++.+++++++..||.+++.+|+.++.....++
T Consensus 193 ~~~~~a~~~a~~l~~~~~~a~~~~K~~~~~~~~~~~ 228 (266)
T PRK05981 193 ELMAEAMKLAHELANGPTVALGLIRKLYWDSPENDF 228 (266)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCH
Confidence 999999999999999999999999999987654443
No 48
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=99.97 E-value=3.3e-31 Score=207.59 Aligned_cols=116 Identities=20% Similarity=0.350 Sum_probs=110.6
Q ss_pred hhchHHHHHHHHcCeeEecCCeEEecccccccc-cCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCc
Q psy9281 34 IYLGGGCELAMMCDIIYAGEKAKFGQPEIIIGT-MPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPP 112 (152)
Q Consensus 34 ~a~G~G~~lal~cD~ria~~~a~f~~pe~~~G~-~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~ 112 (152)
+|+|||++|+++||+||++++++|++||+++|+ +|+.++++++++++|+.++++++++|++++++||+++||||+++|.
T Consensus 117 ~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~~p~~~~~~~l~~~~G~~~a~~llltg~~~~a~eA~~~Glv~~vv~~ 196 (278)
T PLN03214 117 ACPAGGCAVSLCCDYRLQTTEGTMGLNEVALGIPVPKFWARLFMGRVIDRKVAESLLLRGRLVRPAEAKQLGLIDEVVPA 196 (278)
T ss_pred cccchHHHHHHhCCEEEecCCCEecCcHHHhCCCCCChhHHHHHHHhcCHHHHHHHHHcCCccCHHHHHHcCCCcEecCh
Confidence 999999999999999999999999999999999 5888889999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHhccccCCC
Q psy9281 113 EKLLEETIKLAERIGEHSPLIVTQVKEAVNIDDTEGL 149 (152)
Q Consensus 113 ~~l~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l 149 (152)
+++.+.+.+++++++..||.+++.+|+.+++....++
T Consensus 197 ~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l 233 (278)
T PLN03214 197 AALMEAAASAMERALKLPSAARAATKALLREEFSAAW 233 (278)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHH
Confidence 9999999999999999999999999999987655443
No 49
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=99.97 E-value=5e-31 Score=205.79 Aligned_cols=116 Identities=31% Similarity=0.518 Sum_probs=110.8
Q ss_pred hhchHHHHHHHHcCeeEecCCeEEecccccccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCcc
Q psy9281 34 IYLGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPE 113 (152)
Q Consensus 34 ~a~G~G~~lal~cD~ria~~~a~f~~pe~~~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~ 113 (152)
+|+|||++|+++||+||++++++|++||+++|++|+.++++++++++|+.++++++++|++++++||+++||||+++|++
T Consensus 118 ~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 197 (272)
T PRK06210 118 ACAGIGLTHALMCDVRFAADGAKFTTAFARRGLIAEHGISWILPRLVGHANALDLLLSARTFYAEEALRLGLVNRVVPPD 197 (272)
T ss_pred eeehHHHHHHHhCCEEEEeCCCEEechHHhcCCCCCCchhhhhHhhhCHHHHHHHHHcCCccCHHHHHHcCCcceecCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcC-CHHHHHHHHHHHhccccCCC
Q psy9281 114 KLLEETIKLAERIGEH-SPLIVTQVKEAVNIDDTEGL 149 (152)
Q Consensus 114 ~l~~~~~~~a~~l~~~-~~~a~~~~K~~l~~~~~~~l 149 (152)
++.+++.+++++++.. +|.++..+|+.++.....++
T Consensus 198 ~l~~~a~~~a~~i~~~~~p~a~~~~K~~l~~~~~~~l 234 (272)
T PRK06210 198 ELMERTLAYAEDLARNVSPASMAVIKRQLYEDAFQTL 234 (272)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCH
Confidence 9999999999999985 99999999999987655544
No 50
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=99.97 E-value=4.9e-31 Score=201.30 Aligned_cols=141 Identities=18% Similarity=0.158 Sum_probs=123.6
Q ss_pred ccccCCCCCCcchhhhhhhchh--hh-------hhhh-------------hhchHHHHHHHHcCeeEecCC-eEEecccc
Q psy9281 6 KLFILIDYEQKDLYRSKNLKFI--QC-------LKIW-------------IYLGGGCELAMMCDIIYAGEK-AKFGQPEI 62 (152)
Q Consensus 6 k~Fs~~~caG~Dl~~~~~~~~~--~~-------~~~~-------------~a~G~G~~lal~cD~ria~~~-a~f~~pe~ 62 (152)
|+|| +|+|++++...... .. +..+ +|+|+|++|+++||+||++++ ++|++||+
T Consensus 55 ~~F~----~G~Dl~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~lal~~D~rva~~~~a~f~~pe~ 130 (229)
T PRK06213 55 GIFS----GGFDLKVMTSGAQAAIALLTAGSTLARRLLSHPKPVIVACTGHAIAKGAFLLLSADYRIGVHGPFKIGLNEV 130 (229)
T ss_pred CceE----cCcCHHHHhcchHhHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeeHHHHHHHHhCCeeeEecCCcEEECchh
Confidence 6899 99999987532111 00 1111 999999999999999999999 99999999
Q ss_pred cccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q psy9281 63 IIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVKEAVN 142 (152)
Q Consensus 63 ~~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~~l~~~~~~~a~~l~~~~~~a~~~~K~~l~ 142 (152)
++|++|+.++..++++++|+..+++++++|++++++||+++||||+++|++++.+++.++++++++.||.+++.+|+.++
T Consensus 131 ~~Gl~~~~~~~~~l~~~~g~~~a~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~ 210 (229)
T PRK06213 131 AIGMTMPHAAIELARDRLTPSAFQRAVINAEMFDPEEAVAAGFLDEVVPPEQLLARAQAAARELAGLNMGAHAATKLKVR 210 (229)
T ss_pred hhCCcCChHHHHHHHHHcCHHHHHHHHHcCcccCHHHHHHCCCceeccChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 99998888888889999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccccCCCC
Q psy9281 143 IDDTEGLN 150 (152)
Q Consensus 143 ~~~~~~l~ 150 (152)
......++
T Consensus 211 ~~~~~~l~ 218 (229)
T PRK06213 211 AAALEAIR 218 (229)
T ss_pred HHHHHHHH
Confidence 86554443
No 51
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=99.97 E-value=1.4e-30 Score=205.62 Aligned_cols=112 Identities=30% Similarity=0.417 Sum_probs=108.8
Q ss_pred hhchHHHHHHHHcCeeEecCCeEEecccccccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCcc
Q psy9281 34 IYLGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPE 113 (152)
Q Consensus 34 ~a~G~G~~lal~cD~ria~~~a~f~~pe~~~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~ 113 (152)
+|+|||++|+++||+||++++++|++||+++|++|+.+++++|++++|.+++++++++|++++++||+++||||+++|++
T Consensus 123 ~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~llltg~~~~a~eA~~~GLv~~vv~~~ 202 (296)
T PRK08260 123 PAVGVGATMTLAMDIRLASTAARFGFVFGRRGIVPEAASSWFLPRLVGLQTALEWVYSGRVFDAQEALDGGLVRSVHPPD 202 (296)
T ss_pred eeehHhHHHHHhCCEEEeeCCCEEecchhhcCcCCCcchhhhHHHhhCHHHHHHHHHcCCccCHHHHHHCCCceeecCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcC-CHHHHHHHHHHHhccc
Q psy9281 114 KLLEETIKLAERIGEH-SPLIVTQVKEAVNIDD 145 (152)
Q Consensus 114 ~l~~~~~~~a~~l~~~-~~~a~~~~K~~l~~~~ 145 (152)
++.+++.+++++++.. ||.+++.+|+.++...
T Consensus 203 ~l~~~a~~~a~~i~~~~~~~a~~~~K~~l~~~~ 235 (296)
T PRK08260 203 ELLPAARALAREIADNTSPVSVALTRQMMWRMA 235 (296)
T ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Confidence 9999999999999985 9999999999998764
No 52
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=99.97 E-value=6.9e-31 Score=205.53 Aligned_cols=113 Identities=34% Similarity=0.405 Sum_probs=108.5
Q ss_pred hhchHHHHHHHHcCeeEecCCeEEecccccccccC-CccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCc
Q psy9281 34 IYLGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMP-GAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPP 112 (152)
Q Consensus 34 ~a~G~G~~lal~cD~ria~~~a~f~~pe~~~G~~p-~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~ 112 (152)
+|+|||++|+++||+||++++++|++||+++|++| +.|++++|++++|+.++++++++|++++++||+++||||+++|+
T Consensus 119 ~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~A~~l~l~g~~~~a~eA~~~Glv~~vv~~ 198 (276)
T PRK05864 119 PAIGGGLCLALAADIRVASSSAYFRAAGINNGLTASELGLSYLLPRAIGSSRAFEIMLTGRDVDAEEAERIGLVSRQVPD 198 (276)
T ss_pred EeehhHHHHHHhCCEEEeeCCCEecCcccccCCCCCCcchheehHhhhCHHHHHHHHHcCCccCHHHHHHcCCcceeeCH
Confidence 99999999999999999999999999999999997 67888999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHhcccc
Q psy9281 113 EKLLEETIKLAERIGEHSPLIVTQVKEAVNIDDT 146 (152)
Q Consensus 113 ~~l~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~ 146 (152)
+++.+++.+++++|+..||.+++.+|+.++....
T Consensus 199 ~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~ 232 (276)
T PRK05864 199 EQLLDTCYAIAARMAGFSRPGIELTKRTLWSGLD 232 (276)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999986543
No 53
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=99.97 E-value=1.1e-30 Score=203.08 Aligned_cols=112 Identities=26% Similarity=0.401 Sum_probs=106.6
Q ss_pred hhchHHHHHHHHcCeeEecCCeEEecccccccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCcc
Q psy9281 34 IYLGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPE 113 (152)
Q Consensus 34 ~a~G~G~~lal~cD~ria~~~a~f~~pe~~~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~ 113 (152)
+|+|||++|+++||+||++++++|++||+++|++|+.++++ +.+++|..++++|+++|++++++||+++||||+++|++
T Consensus 110 ~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~-~~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~ 188 (262)
T PRK07468 110 QAFGGGVGLISVCDVAIAVSGARFGLTETRLGLIPATISPY-VVARMGEANARRVFMSARLFDAEEAVRLGLLSRVVPAE 188 (262)
T ss_pred EEEhHHHHHHHhCCEEEEeCCCEEeCchhccCCCcccchhh-HHhhccHHHHHHHHHhCCccCHHHHHHcCCcceecCHH
Confidence 99999999999999999999999999999999999998887 55669999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHhcccc
Q psy9281 114 KLLEETIKLAERIGEHSPLIVTQVKEAVNIDDT 146 (152)
Q Consensus 114 ~l~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~ 146 (152)
++.+.+.++++++++.||.+++.+|+.++....
T Consensus 189 ~l~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~ 221 (262)
T PRK07468 189 RLDAAVEAEVTPYLSCAPGAVAAAKALVRALGA 221 (262)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999986543
No 54
>PLN02921 naphthoate synthase
Probab=99.97 E-value=1.8e-30 Score=207.34 Aligned_cols=112 Identities=33% Similarity=0.538 Sum_probs=109.0
Q ss_pred hhchHHHHHHHHcCeeEecCCeEEecccccccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCcc
Q psy9281 34 IYLGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPE 113 (152)
Q Consensus 34 ~a~G~G~~lal~cD~ria~~~a~f~~pe~~~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~ 113 (152)
+|+|||++|+++||+||++++++|++||+++|++|++++++++++++|.+++++++++|++++++||+++||||+++|++
T Consensus 171 ~a~GGG~~LalacD~riA~~~A~f~~pe~~~Gl~p~~gg~~~L~rliG~~~A~ellltG~~~~A~eA~~~GLV~~vv~~~ 250 (327)
T PLN02921 171 YAVGGGHILHMVCDLTIAADNAVFGQTGPKVGSFDAGYGSSIMARLVGQKKAREMWFLARFYTASEALKMGLVNTVVPLD 250 (327)
T ss_pred EEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHCCCceEEeCHH
Confidence 99999999999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHhccc
Q psy9281 114 KLLEETIKLAERIGEHSPLIVTQVKEAVNIDD 145 (152)
Q Consensus 114 ~l~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~ 145 (152)
++.+++.+++++|+..||.+++.+|+.++...
T Consensus 251 ~l~~~a~~~a~~la~~~p~al~~~K~~l~~~~ 282 (327)
T PLN02921 251 ELEGETVKWCREILRNSPTAIRVLKSALNAAD 282 (327)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999998753
No 55
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=99.97 E-value=1.8e-30 Score=200.53 Aligned_cols=113 Identities=29% Similarity=0.480 Sum_probs=106.3
Q ss_pred hhchHHHHHHHHcCeeEecCCeEEecccccccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCcc
Q psy9281 34 IYLGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPE 113 (152)
Q Consensus 34 ~a~G~G~~lal~cD~ria~~~a~f~~pe~~~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~ 113 (152)
+|+|||++|+++||+||++++++|++||+++|++ +++++|++++|+.++++++++|++++++||+++||||+++|++
T Consensus 104 ~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~G~~---g~~~~l~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 180 (249)
T PRK07938 104 FCLGGGIGLVGNADVIVASDDATFGLPEVDRGAL---GAATHLQRLVPQHLMRALFFTAATITAAELHHFGSVEEVVPRD 180 (249)
T ss_pred EEeehHHHHHHhCCEEEEeCCCEeeCccceecCc---hhHHHHHHhcCHHHHHHHHHhCCcCCHHHHHHCCCccEEeCHH
Confidence 9999999999999999999999999999999986 3566799999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHhccccCCC
Q psy9281 114 KLLEETIKLAERIGEHSPLIVTQVKEAVNIDDTEGL 149 (152)
Q Consensus 114 ~l~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l 149 (152)
++.+++.+++++++..||.+++.+|+.++.....++
T Consensus 181 ~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l 216 (249)
T PRK07938 181 QLDEAALEVARKIAAKDTRVIRAAKEALNGIDPQDV 216 (249)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCCH
Confidence 999999999999999999999999999987655443
No 56
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=99.97 E-value=5.1e-30 Score=198.77 Aligned_cols=113 Identities=38% Similarity=0.578 Sum_probs=106.1
Q ss_pred hhchHHHHHHHHcCeeEecCCeEEecccccccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCcc
Q psy9281 34 IYLGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPE 113 (152)
Q Consensus 34 ~a~G~G~~lal~cD~ria~~~a~f~~pe~~~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~ 113 (152)
+|+|||++|+++||+||++++++|++||+++|+. ++.+++++++|+.++++++++|++++++||+++||||+++|++
T Consensus 107 ~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~---~~~~~l~~~~g~~~a~~lll~g~~~~a~eA~~~GLv~~vv~~~ 183 (257)
T PRK06495 107 PALGAGLGLVASCDIIVASENAVFGLPEIDVGLA---GGGKHAMRLFGHSLTRRMMLTGYRVPAAELYRRGVIEACLPPE 183 (257)
T ss_pred eeehhHHHHHHhCCEEEecCCCEeeChhhccCcc---ccHHHHHHHhCHHHHHHHHHcCCeeCHHHHHHcCCcceecCHH
Confidence 9999999999999999999999999999999997 3466799999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHhccccCCC
Q psy9281 114 KLLEETIKLAERIGEHSPLIVTQVKEAVNIDDTEGL 149 (152)
Q Consensus 114 ~l~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l 149 (152)
++.+++.++++++++.||.+++.+|+.++.....++
T Consensus 184 ~~~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l 219 (257)
T PRK06495 184 ELMPEAMEIAREIASKSPLATRLAKDALNTIENMSL 219 (257)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCH
Confidence 999999999999999999999999999987654443
No 57
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=99.97 E-value=7e-30 Score=197.44 Aligned_cols=137 Identities=20% Similarity=0.298 Sum_probs=114.7
Q ss_pred ccccCCCCCCcchhhhhhhchhh-------hhhhh-------------hhchHHHHHHHHcCeeEecCCeEEeccccccc
Q psy9281 6 KLFILIDYEQKDLYRSKNLKFIQ-------CLKIW-------------IYLGGGCELAMMCDIIYAGEKAKFGQPEIIIG 65 (152)
Q Consensus 6 k~Fs~~~caG~Dl~~~~~~~~~~-------~~~~~-------------~a~G~G~~lal~cD~ria~~~a~f~~pe~~~G 65 (152)
++|| +|.||+++....... .+..+ +|+|||++|+++||+||++++++|++||+++|
T Consensus 55 ~~Fc----aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G 130 (251)
T TIGR03189 55 PHFS----FGASVAEHMPDQCAAMLASLHKLVIAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQPEIVLG 130 (251)
T ss_pred Ccee----cCcChhhhCchhHHHHHHHHHHHHHHHHhCCCCEEEEecCeeeeHHHHHHHhCCEEEEcCCCEEeCchhhcC
Confidence 6899 999999853211111 11111 99999999999999999999999999999999
Q ss_pred ccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCcchHHHHHHHH-HHHHhcCCHHHHHHHHHHHhcc
Q psy9281 66 TMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPEKLLEETIKL-AERIGEHSPLIVTQVKEAVNID 144 (152)
Q Consensus 66 ~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~~l~~~~~~~-a~~l~~~~~~a~~~~K~~l~~~ 144 (152)
++|++ ++++|++++|+.++++++++|++++++||+++||||+++|+++ +.+.+. +++++..||.+++.+|+.++..
T Consensus 131 l~p~~-~~~~l~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~v~~~~~--~~a~~~~a~~la~~~p~a~~~~K~~l~~~ 207 (251)
T TIGR03189 131 VFAPA-ASCLLPERMGRVAAEDLLYSGRSIDGAEGARIGLANAVAEDPE--NAALAWFDEHPAKLSASSLRFAVRAARLG 207 (251)
T ss_pred CCCCc-hHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCcceecCcHH--HHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Confidence 99874 5678999999999999999999999999999999999998543 456665 6899999999999999999876
Q ss_pred ccCCC
Q psy9281 145 DTEGL 149 (152)
Q Consensus 145 ~~~~l 149 (152)
...++
T Consensus 208 ~~~~~ 212 (251)
T TIGR03189 208 MNERV 212 (251)
T ss_pred hcccH
Confidence 55443
No 58
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=99.97 E-value=5.5e-30 Score=198.47 Aligned_cols=137 Identities=42% Similarity=0.645 Sum_probs=121.4
Q ss_pred ccccCCCCCCcchhhhhh---hchh-hh-------hhhh-------------hhchHHHHHHHHcCeeEecCCeEEeccc
Q psy9281 6 KLFILIDYEQKDLYRSKN---LKFI-QC-------LKIW-------------IYLGGGCELAMMCDIIYAGEKAKFGQPE 61 (152)
Q Consensus 6 k~Fs~~~caG~Dl~~~~~---~~~~-~~-------~~~~-------------~a~G~G~~lal~cD~ria~~~a~f~~pe 61 (152)
|+|| +|+||+++.. .... .. +..+ +|+|||++|+++||+||++++++|++||
T Consensus 60 ~~Fs----aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~eLal~~D~ria~~~a~f~~pe 135 (257)
T COG1024 60 KAFS----AGADLKELLSPEDGNAAENLMQPGQDLLRALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDAKFGLPE 135 (257)
T ss_pred Ccee----cccCHHHHhcccchhHHHHHHhHHHHHHHHHHhCCCCEEEEEcceEeechhhhhhcCCeEEecCCcEecCcc
Confidence 7899 9999999863 1111 11 1111 9999999999999999999999999999
Q ss_pred ccccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCc-chHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy9281 62 IIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPP-EKLLEETIKLAERIGEHSPLIVTQVKEA 140 (152)
Q Consensus 62 ~~~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~-~~l~~~~~~~a~~l~~~~~~a~~~~K~~ 140 (152)
+++|++|+.|+++++++++|..++++++++|++++++||+++|||++++++ +++.+.+.+++++++. ||.++..+|+.
T Consensus 136 ~~iGl~Pg~g~~~~l~r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~a~-~~~a~~~~k~~ 214 (257)
T COG1024 136 VNLGLLPGDGGTQRLPRLLGRGRAKELLLTGEPISAAEALELGLVDEVVPDAEELLERALELARRLAA-PPLALAATKRL 214 (257)
T ss_pred cccccCCCCcHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHHcCCcCeeeCCHHHHHHHHHHHHHHHcc-CHHHHHHHHHH
Confidence 999999977999999999999999999999999999999999999999985 7999999999999998 99999999999
Q ss_pred HhccccC
Q psy9281 141 VNIDDTE 147 (152)
Q Consensus 141 l~~~~~~ 147 (152)
++.....
T Consensus 215 ~~~~~~~ 221 (257)
T COG1024 215 VRAALEA 221 (257)
T ss_pred HHHhhhc
Confidence 9876543
No 59
>PRK08321 naphthoate synthase; Validated
Probab=99.97 E-value=1e-29 Score=201.20 Aligned_cols=113 Identities=34% Similarity=0.573 Sum_probs=108.8
Q ss_pred hhchHHHHHHHHcCeeEec-CCeEEecccccccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCc
Q psy9281 34 IYLGGGCELAMMCDIIYAG-EKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPP 112 (152)
Q Consensus 34 ~a~G~G~~lal~cD~ria~-~~a~f~~pe~~~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~ 112 (152)
+|+|||++|+++||+||++ ++++|++||+++|++|+++++++|++++|++++++++++|++++++||+++||||+++|+
T Consensus 145 ~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~~~~~~~L~r~vG~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~ 224 (302)
T PRK08321 145 WAAGGGHSLHVVCDLTLASREHARFKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFLGRTYSAEEAHDMGAVNAVVPH 224 (302)
T ss_pred eeehHHHHHHHhCCEEEEecCCCEEECCccccccCCCchHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHCCCceEeeCH
Confidence 9999999999999999999 699999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHhcccc
Q psy9281 113 EKLLEETIKLAERIGEHSPLIVTQVKEAVNIDDT 146 (152)
Q Consensus 113 ~~l~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~ 146 (152)
+++.+++.+++++|+..||.+++.+|+.++....
T Consensus 225 ~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~ 258 (302)
T PRK08321 225 AELETEALEWAREINGKSPTAMRMLKYAFNLTDD 258 (302)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999986533
No 60
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=99.97 E-value=7.1e-30 Score=198.31 Aligned_cols=114 Identities=30% Similarity=0.418 Sum_probs=107.9
Q ss_pred hhchHHHHHHHHcCeeEecCCeEEecccccccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCcc
Q psy9281 34 IYLGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPE 113 (152)
Q Consensus 34 ~a~G~G~~lal~cD~ria~~~a~f~~pe~~~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~ 113 (152)
+|+|||++|+++||+||++++++|++||+++|++|++++++++++++|+.++++++++|++++++||+++||||++++
T Consensus 112 ~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~-- 189 (262)
T PRK07509 112 VCFGGGLQIALGADIRIAAPDTKLSIMEAKWGLVPDMAGTVSLRGLVRKDVARELTYTARVFSAEEALELGLVTHVSD-- 189 (262)
T ss_pred eeecchHHHHHhCCEEEecCCCEeecchhccCCCCCchHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHcCChhhhhc--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHhccccCCC
Q psy9281 114 KLLEETIKLAERIGEHSPLIVTQVKEAVNIDDTEGL 149 (152)
Q Consensus 114 ~l~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l 149 (152)
++.+++.+++++++..||.+++.+|+.++.....++
T Consensus 190 ~~~~~a~~~a~~l~~~~~~~~~~~K~~l~~~~~~~~ 225 (262)
T PRK07509 190 DPLAAALALAREIAQRSPDAIAAAKRLINRSWTASV 225 (262)
T ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCH
Confidence 467899999999999999999999999987655443
No 61
>PRK08788 enoyl-CoA hydratase; Validated
Probab=99.96 E-value=1.6e-29 Score=198.67 Aligned_cols=109 Identities=28% Similarity=0.351 Sum_probs=100.7
Q ss_pred hhchHHHHHHHHcCeeEecCCeEEecccccccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCcc
Q psy9281 34 IYLGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPE 113 (152)
Q Consensus 34 ~a~G~G~~lal~cD~ria~~~a~f~~pe~~~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~ 113 (152)
+|+|||++|+++||+||++++++|++||+++|++|++++++++++++|++++++++++|++++++||+++||||+++|++
T Consensus 131 ~a~GgG~~LalacD~ria~~~a~f~~pev~lGl~p~~g~~~~l~~~vG~~~A~ellltG~~l~A~eA~~~GLV~~vv~~~ 210 (287)
T PRK08788 131 DALGGGFEAALSHHTIIAERGAKMGFPEILFNLFPGMGAYSFLARRVGPKLAEELILSGKLYTAEELHDMGLVDVLVEDG 210 (287)
T ss_pred eeehHHHHHHHhCCEEEecCCCEeeCchhhhCcCCCchHHHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCCcEecCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q psy9281 114 KLLEETIKLAERIGEHSPLIVTQVKEAVNI 143 (152)
Q Consensus 114 ~l~~~~~~~a~~l~~~~~~a~~~~K~~l~~ 143 (152)
++.+++.+++++++.. |.+...+|+..+.
T Consensus 211 el~~~a~~~a~~ia~~-~~~~~a~k~~~~~ 239 (287)
T PRK08788 211 QGEAAVRTFIRKSKRK-LNGWRAMLRARRR 239 (287)
T ss_pred HHHHHHHHHHHHHhcC-ccHHHHHHHHHHh
Confidence 9999999999999976 5555555554443
No 62
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=99.96 E-value=2.5e-29 Score=194.02 Aligned_cols=136 Identities=23% Similarity=0.260 Sum_probs=117.6
Q ss_pred ccccCCCCCCcchhhhhhhchhhh-------hhhh-------------hhchHHHHHHHHcCeeEecCCeEEeccccccc
Q psy9281 6 KLFILIDYEQKDLYRSKNLKFIQC-------LKIW-------------IYLGGGCELAMMCDIIYAGEKAKFGQPEIIIG 65 (152)
Q Consensus 6 k~Fs~~~caG~Dl~~~~~~~~~~~-------~~~~-------------~a~G~G~~lal~cD~ria~~~a~f~~pe~~~G 65 (152)
|+|| +|.||+++.+...... +..+ +|+|+|++|+++||+||++++++|++||+++|
T Consensus 55 ~~F~----aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~~~~~~G 130 (248)
T PRK06072 55 RAFC----VGADLSEFAPDFAIDLRETFYPIIREIRFSDKIYISAINGVTAGACIGIALSTDFKFASRDVKFVTAFQRLG 130 (248)
T ss_pred CCcc----cCcCHHHHhhhhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEecchhhcC
Confidence 6899 9999998754211111 1111 99999999999999999999999999999999
Q ss_pred ccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHhccc
Q psy9281 66 TMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVKEAVNIDD 145 (152)
Q Consensus 66 ~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~~l~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~ 145 (152)
++|+.++++++++++|. ++++++++|++++++||+++||||++ +++.+++.+++++++..||.+++.+|+.++...
T Consensus 131 l~p~~g~~~~l~~~~g~-~a~~lll~g~~~~a~eA~~~Glv~~~---~~~~~~a~~~a~~la~~~~~a~~~~K~~l~~~~ 206 (248)
T PRK06072 131 LASDTGVAYFLLKLTGQ-RFYEILVLGGEFTAEEAERWGLLKIS---EDPLSDAEEMANRISNGPFQSYIAAKRMINLVL 206 (248)
T ss_pred cCCCchHHHHHHHHhhH-HHHHHHHhCCccCHHHHHHCCCcccc---chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 99999999999999996 89999999999999999999999964 467889999999999999999999999998765
Q ss_pred cCCC
Q psy9281 146 TEGL 149 (152)
Q Consensus 146 ~~~l 149 (152)
..++
T Consensus 207 ~~~l 210 (248)
T PRK06072 207 YNDL 210 (248)
T ss_pred hcCH
Confidence 5443
No 63
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=99.96 E-value=3.7e-29 Score=192.57 Aligned_cols=107 Identities=27% Similarity=0.373 Sum_probs=102.2
Q ss_pred hhchHHHHHHHHcCeeEecCCeEEecccccccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCcc
Q psy9281 34 IYLGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPE 113 (152)
Q Consensus 34 ~a~G~G~~lal~cD~ria~~~a~f~~pe~~~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~ 113 (152)
+|+|||++|+++||+||++++++|++||+++|++|+++++++|++++|++++++++++|++++++||+++||||++++
T Consensus 96 ~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~v~~-- 173 (243)
T PRK07854 96 PAIGAGLQLAMACDLRVVAPEAYFQFPVAKYGIALDNWTIRRLSSLVGGGRARAMLLGAEKLTAEQALATGMANRIGT-- 173 (243)
T ss_pred cccccHHHHHHhCCEEEEcCCCEEeccccccccCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHCCCcccccC--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc
Q psy9281 114 KLLEETIKLAERIGEHSPLIVTQVKEAVNID 144 (152)
Q Consensus 114 ~l~~~~~~~a~~l~~~~~~a~~~~K~~l~~~ 144 (152)
+. ++.++++++++.||.+++.+|+.++..
T Consensus 174 -~~-~a~~~a~~l~~~~~~a~~~~K~~l~~~ 202 (243)
T PRK07854 174 -LA-DAQAWAAEIAGLAPLALQHAKRVLNDD 202 (243)
T ss_pred -HH-HHHHHHHHHHhCCHHHHHHHHHHHHcc
Confidence 33 789999999999999999999999764
No 64
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=99.96 E-value=4.2e-29 Score=196.55 Aligned_cols=112 Identities=34% Similarity=0.542 Sum_probs=105.2
Q ss_pred hhchHHHHHHHHcCeeEecCCeEEecccccccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCcc
Q psy9281 34 IYLGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPE 113 (152)
Q Consensus 34 ~a~G~G~~lal~cD~ria~~~a~f~~pe~~~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~ 113 (152)
+|+|+|++|+++||+||++++++|++||+++|+ |+ .+.+++++++|+.++++++++|++++++||+++||||+++|++
T Consensus 128 ~a~GgG~~lalacD~ria~e~a~f~~pe~~lGl-~~-~~~~~l~~~iG~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~ 205 (288)
T PRK08290 128 ACIAGGLMLAWVCDLIVASDDAFFSDPVVRMGI-PG-VEYFAHPWELGPRKAKELLFTGDRLTADEAHRLGMVNRVVPRD 205 (288)
T ss_pred EeeHHHHHHHHhCCEEEeeCCCEecCcccccCc-Cc-chHHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCccEeeCHH
Confidence 999999999999999999999999999999999 44 3466789999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHhccccC
Q psy9281 114 KLLEETIKLAERIGEHSPLIVTQVKEAVNIDDTE 147 (152)
Q Consensus 114 ~l~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~ 147 (152)
++.+++.+++++++..||.+++.+|+.++.....
T Consensus 206 ~l~~~a~~~a~~la~~~~~a~~~~K~~~~~~~~~ 239 (288)
T PRK08290 206 ELEAETLELARRIAAMPPFGLRLTKRAVNQTLDA 239 (288)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999876543
No 65
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=99.96 E-value=1.6e-29 Score=203.08 Aligned_cols=115 Identities=28% Similarity=0.393 Sum_probs=107.8
Q ss_pred hhchHHHHHHHHcCeeEecCCeEEecccccccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCcc
Q psy9281 34 IYLGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPE 113 (152)
Q Consensus 34 ~a~G~G~~lal~cD~ria~~~a~f~~pe~~~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~ 113 (152)
+|+|||++|+++||+||++++++|++||+++|++|++|++++|+++.| .++++++++|++++++||+++||||+++|++
T Consensus 110 ~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~g~~~~L~r~~g-~~a~~llltG~~i~A~eA~~~GLv~~vv~~~ 188 (342)
T PRK05617 110 IVMGGGVGISAHGSHRIVTERTKMAMPETGIGFFPDVGGTYFLSRAPG-ALGTYLALTGARISAADALYAGLADHFVPSA 188 (342)
T ss_pred EEEccHhHHhhhCCEEEEcCCCEeeCCccccCcCCCccceeEehhccc-HHHHHHHHcCCCCCHHHHHHcCCcceecCHH
Confidence 999999999999999999999999999999999999999999999877 6899999999999999999999999999988
Q ss_pred hHHHH--------------------------------------------------------------HHHHHHHHhcCCH
Q psy9281 114 KLLEE--------------------------------------------------------------TIKLAERIGEHSP 131 (152)
Q Consensus 114 ~l~~~--------------------------------------------------------------~~~~a~~l~~~~~ 131 (152)
++.+. +.+++++|++.||
T Consensus 189 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~a~~~a~~i~~~sp 268 (342)
T PRK05617 189 DLPALLDALISLRWDSGADVVDAALAAFATPAPASELAAQRAWIDECFAGDTVEDIIAALEADGGEFAAKTADTLRSRSP 268 (342)
T ss_pred HHHHHHHHHHhcCCccchhHHHHHHHHhccCCCcchhHHHHHHHHHHhCCCCHHHHHHHHHhccHHHHHHHHHHHHhCCc
Confidence 88776 8899999999999
Q ss_pred HHHHHHHHHHhccccCCC
Q psy9281 132 LIVTQVKEAVNIDDTEGL 149 (152)
Q Consensus 132 ~a~~~~K~~l~~~~~~~l 149 (152)
.+++.+|++++.....++
T Consensus 269 ~a~~~~k~~l~~~~~~~l 286 (342)
T PRK05617 269 TSLKVTLEQLRRARGLTL 286 (342)
T ss_pred HHHHHHHHHHHHhcCCCH
Confidence 999999999987655443
No 66
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=99.96 E-value=8.7e-29 Score=195.90 Aligned_cols=110 Identities=31% Similarity=0.438 Sum_probs=103.0
Q ss_pred hhchHHHHHHHHcCeeEecCCeEEecccccccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCcc
Q psy9281 34 IYLGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPE 113 (152)
Q Consensus 34 ~a~G~G~~lal~cD~ria~~~a~f~~pe~~~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~ 113 (152)
+|+|||++|+++||+||++++++|++||+++|.+|+. ..+++++|+++|++++++|++++++||+++||||+++|++
T Consensus 137 ~a~GgG~~lalacD~~ias~~a~f~~pe~~~gg~~~~---~~~~~~vG~~~A~~llltG~~i~a~eA~~~GLv~~vv~~~ 213 (302)
T PRK08272 137 YCVAGGTDIALHCDQVIAADDAKIGYPPTRVWGVPAT---GMWAYRLGPQRAKRLLFTGDCITGAQAAEWGLAVEAVPPE 213 (302)
T ss_pred EeehhhHHHHHhCCEEEEeCCCEecCcchhcccCChH---HHHHHHhhHHHHHHHHHcCCccCHHHHHHcCCCceecCHH
Confidence 9999999999999999999999999999998666642 3578899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHhcccc
Q psy9281 114 KLLEETIKLAERIGEHSPLIVTQVKEAVNIDDT 146 (152)
Q Consensus 114 ~l~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~ 146 (152)
++.+++.+++++|+..||.+++.+|+.++..+.
T Consensus 214 ~l~~~a~~la~~ia~~~~~a~~~~K~~l~~~~~ 246 (302)
T PRK08272 214 ELDERTERLVERIAAVPVNQLAMVKLAVNSALL 246 (302)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999987654
No 67
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=99.96 E-value=5.5e-29 Score=193.25 Aligned_cols=113 Identities=27% Similarity=0.350 Sum_probs=105.2
Q ss_pred hhchHHHHHHHHcCeeEecCCeEEecccccccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCcc
Q psy9281 34 IYLGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPE 113 (152)
Q Consensus 34 ~a~G~G~~lal~cD~ria~~~a~f~~pe~~~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~ 113 (152)
+|+|||++|+++||+||++++++|++||+++|++|++++++++++++ ..++++++++|++++++||+++|||+++++
T Consensus 111 ~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~l~-~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~-- 187 (260)
T PRK07827 111 HVRAGGFGLVGACDIVVAGPESTFALTEARIGVAPAIISLTLLPRLS-PRAAARYYLTGEKFGAAEAARIGLVTAAAD-- 187 (260)
T ss_pred eeecchhhHHHhCCEEEEcCCCEEeCcccccCCCCCcccchhHHhhh-HHHHHHHHHhCCccCHHHHHHcCCcccchH--
Confidence 99999999999999999999999999999999999999999888764 569999999999999999999999999974
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHhccccCCC
Q psy9281 114 KLLEETIKLAERIGEHSPLIVTQVKEAVNIDDTEGL 149 (152)
Q Consensus 114 ~l~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l 149 (152)
++.+++.++++++++.||.+++.+|+.+++.....+
T Consensus 188 ~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~ 223 (260)
T PRK07827 188 DVDAAVAALLADLRRGSPQGLAESKALTTAAVLAGF 223 (260)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCH
Confidence 588999999999999999999999999998765543
No 68
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=99.96 E-value=2.3e-28 Score=189.29 Aligned_cols=108 Identities=24% Similarity=0.227 Sum_probs=100.5
Q ss_pred hhchHHHHHHHHcCeeEecCCeEEecccccccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCcc
Q psy9281 34 IYLGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPE 113 (152)
Q Consensus 34 ~a~G~G~~lal~cD~ria~~~a~f~~pe~~~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~ 113 (152)
+|+|||++|+++||+||++++++|++||+++|++|+++ ..++++++|+.++++++++|++++++||+++||||+++|++
T Consensus 106 ~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~~-~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 184 (255)
T PRK07112 106 KVNAGGIGFVAASDIVIADETAPFSLSELLFGLIPACV-LPFLIRRIGTQKAHYMTLMTQPVTAQQAFSWGLVDAYGANS 184 (255)
T ss_pred EEEcchhHHHHcCCEEEEcCCCEEeCchhhhccCcchh-hHHHHHHhCHHHHHHHHHhCCcccHHHHHHcCCCceecCcH
Confidence 99999999999999999999999999999999999865 45699999999999999999999999999999999999865
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc
Q psy9281 114 KLLEETIKLAERIGEHSPLIVTQVKEAVNID 144 (152)
Q Consensus 114 ~l~~~~~~~a~~l~~~~~~a~~~~K~~l~~~ 144 (152)
+. .+.+++++++..||.+++.+|+.++..
T Consensus 185 ~~--~~~~~a~~l~~~~p~a~~~~K~~~~~~ 213 (255)
T PRK07112 185 DT--LLRKHLLRLRCLNKAAVARYKSYASTL 213 (255)
T ss_pred HH--HHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 53 578899999999999999999999754
No 69
>KOG1679|consensus
Probab=99.95 E-value=3.8e-29 Score=185.64 Aligned_cols=142 Identities=32% Similarity=0.490 Sum_probs=127.2
Q ss_pred cccccCCCCCCcchhhhhhhchhhh-------------hhhh----------hhchHHHHHHHHcCeeEecCCeEEeccc
Q psy9281 5 EKLFILIDYEQKDLYRSKNLKFIQC-------------LKIW----------IYLGGGCELAMMCDIIYAGEKAKFGQPE 61 (152)
Q Consensus 5 ~k~Fs~~~caG~Dl~~~~~~~~~~~-------------~~~~----------~a~G~G~~lal~cD~ria~~~a~f~~pe 61 (152)
+..|| +|+||++-...+..+. +++. .++|||++|+++||+|++.++++++++|
T Consensus 86 pgvFC----aGADLKER~~Ms~~Ev~~fV~~lR~~~~dIe~Lp~P~IAAidG~ALGGGLElALACDiRva~s~akmGLvE 161 (291)
T KOG1679|consen 86 PGVFC----AGADLKERKTMSPSEVTRFVNGLRGLFNDIERLPQPVIAAIDGAALGGGLELALACDIRVAASSAKMGLVE 161 (291)
T ss_pred Cceee----cCcchHhhhcCCHHHHHHHHHHHHHHHHHHHhCCccceehhcchhcccchhhhhhccceehhhhccccccc
Confidence 45677 9999999877655443 1111 8999999999999999999999999999
Q ss_pred ccccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCcc----hHHHHHHHHHHHHhcCCHHHHHHH
Q psy9281 62 IIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPE----KLLEETIKLAERIGEHSPLIVTQV 137 (152)
Q Consensus 62 ~~~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~----~l~~~~~~~a~~l~~~~~~a~~~~ 137 (152)
++++++|+.|++.+|+|.+|++.++++++|++.+++.||...|+||+++.+. ...+++.+++++|..+.|.+++..
T Consensus 162 T~laiiPGaGGtQRLpR~vg~alaKELIftarvl~g~eA~~lGlVnhvv~qneegdaa~~kal~lA~eilp~gPiavr~a 241 (291)
T KOG1679|consen 162 TKLAIIPGAGGTQRLPRIVGVALAKELIFTARVLNGAEAAKLGLVNHVVEQNEEGDAAYQKALELAREILPQGPIAVRLA 241 (291)
T ss_pred cceeeecCCCccchhHHHHhHHHHHhHhhhheeccchhHHhcchHHHHHhcCccccHHHHHHHHHHHHhccCCchhhhHH
Confidence 9999999999999999999999999999999999999999999999999754 677889999999999999999999
Q ss_pred HHHHhccccCCCC
Q psy9281 138 KEAVNIDDTEGLN 150 (152)
Q Consensus 138 K~~l~~~~~~~l~ 150 (152)
|..++.....++.
T Consensus 242 KlAIn~G~evdia 254 (291)
T KOG1679|consen 242 KLAINLGMEVDIA 254 (291)
T ss_pred HHHhccCceeccc
Confidence 9999998877664
No 70
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=99.95 E-value=3.7e-28 Score=197.49 Aligned_cols=115 Identities=23% Similarity=0.356 Sum_probs=105.3
Q ss_pred hhchHHHHHHHHcCeeEecCCeEEecccccccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCcc
Q psy9281 34 IYLGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPE 113 (152)
Q Consensus 34 ~a~G~G~~lal~cD~ria~~~a~f~~pe~~~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~ 113 (152)
+|+|||++|+++||+||++++++|++||+++|++|+.|++++|++++|. ++++++++|++++++||+++|||++++|++
T Consensus 115 ~a~GgG~~LalacD~ria~~~a~f~~pe~~iGl~p~~g~~~~L~rl~g~-~a~~l~ltG~~i~a~eA~~~GLv~~vv~~~ 193 (379)
T PLN02874 115 LVMGGGAGLMVPMKFRVVTEKTVFATPEASVGFHTDCGFSYILSRLPGH-LGEYLALTGARLNGKEMVACGLATHFVPSE 193 (379)
T ss_pred eEEecHHHHHHhCCeEEEeCCeEEeccccccCcCCChhHHHHHHhhhHH-HHHHHHHcCCcccHHHHHHcCCccEEeCHH
Confidence 9999999999999999999999999999999999999999999999885 899999999999999999999999999988
Q ss_pred hHHH---H----------------------------------------------------------------HHHHHHHH
Q psy9281 114 KLLE---E----------------------------------------------------------------TIKLAERI 126 (152)
Q Consensus 114 ~l~~---~----------------------------------------------------------------~~~~a~~l 126 (152)
++.+ + +.++++.|
T Consensus 194 ~l~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~eii~al~~~~~~~~~~~A~~~a~~l 273 (379)
T PLN02874 194 KLPELEKRLLNLNSGDESAVQEAIEEFSKDVQADEDSILNKQSWINECFSKDTVEEIIKAFESEASKTGNEWIKETLKGL 273 (379)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHhCCCCHHHHHHHHhhcccccccHHHHHHHHHH
Confidence 7765 2 23788999
Q ss_pred hcCCHHHHHHHHHHHhccccCCC
Q psy9281 127 GEHSPLIVTQVKEAVNIDDTEGL 149 (152)
Q Consensus 127 ~~~~~~a~~~~K~~l~~~~~~~l 149 (152)
++.||.+++.+|++++.....++
T Consensus 274 ~~~sP~al~~tk~~~~~~~~~~l 296 (379)
T PLN02874 274 RRSSPTGLKITLRSIREGRKQSL 296 (379)
T ss_pred HhcChHHHHHHHHHHHHhccCCH
Confidence 99999999999999987655443
No 71
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=99.95 E-value=4.9e-28 Score=191.32 Aligned_cols=109 Identities=22% Similarity=0.267 Sum_probs=101.3
Q ss_pred hhchHHHHHHHHcCeeEecCCeEEecccccc-cccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCc
Q psy9281 34 IYLGGGCELAMMCDIIYAGEKAKFGQPEIII-GTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPP 112 (152)
Q Consensus 34 ~a~G~G~~lal~cD~ria~~~a~f~~pe~~~-G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~ 112 (152)
+|+|||++|+++||+||++++++|++||+++ |+++ ++.+ .+++|..++++++++|++++++||+++||||+++|+
T Consensus 122 ~a~GgG~~LalacD~ria~~~A~f~~pe~~l~G~~~--~~~~--~~~vG~~~A~~llltg~~i~A~eA~~~GLV~~vv~~ 197 (298)
T PRK12478 122 WCVGGASDYALCADIVIASDDAVIGTPYSRMWGAYL--TGMW--LYRLSLAKVKWHSLTGRPLTGVQAAEAELINEAVPF 197 (298)
T ss_pred EEehhHHHHHHHCCEEEEcCCcEEeccccccccCCc--hhHH--HHHhhHHHHHHHHHcCCccCHHHHHHcCCcceecCH
Confidence 9999999999999999999999999999997 8875 2333 367999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHhcccc
Q psy9281 113 EKLLEETIKLAERIGEHSPLIVTQVKEAVNIDDT 146 (152)
Q Consensus 113 ~~l~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~ 146 (152)
+++.+++.+++++++..||.+++.+|+.++....
T Consensus 198 ~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~ 231 (298)
T PRK12478 198 ERLEARVAEVATELARIPLSQLQAQKLIVNQAYE 231 (298)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999987654
No 72
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=99.95 E-value=1.1e-27 Score=184.10 Aligned_cols=112 Identities=21% Similarity=0.264 Sum_probs=101.3
Q ss_pred hhchHHHHHHHHcCeeEec-CCeEEecccccccccCCccHHHHHHHHhCHHHH-HHHHHcCCCCCHHHHHHcCCccccCC
Q psy9281 34 IYLGGGCELAMMCDIIYAG-EKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNA-MEICLTGNQFTAQEAKEMGVVSKIFP 111 (152)
Q Consensus 34 ~a~G~G~~lal~cD~ria~-~~a~f~~pe~~~G~~p~~~~~~~l~~~~g~~~a-~~lll~g~~~~a~ea~~~Glv~~v~~ 111 (152)
+|+|||++|+++||+||++ ++++|++||+++|+.++.+++.++++++|..++ ++++++|++++++||+++||||+++|
T Consensus 104 ~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~~p~~~~~~l~~~vG~~~a~~~llltG~~~~a~eA~~~Glv~~vv~ 183 (239)
T PLN02267 104 HASAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPDYFMALLRAKIGSPAARRDVLLRAAKLTAEEAVEMGIVDSAHD 183 (239)
T ss_pred cchHHHHHHHHHCCEEEecCCCCeEeccccccCCCCChHHHHHHHHHcChHHHHHHHHHcCCcCCHHHHHHCCCcceecC
Confidence 9999999999999999998 578999999999997444457789999999999 69999999999999999999999998
Q ss_pred c-chHHHHHHHHHHHHhcC--CHHHHHHHHHHHhccc
Q psy9281 112 P-EKLLEETIKLAERIGEH--SPLIVTQVKEAVNIDD 145 (152)
Q Consensus 112 ~-~~l~~~~~~~a~~l~~~--~~~a~~~~K~~l~~~~ 145 (152)
+ +++.+++.++++++++. ++.++..+|+.++...
T Consensus 184 ~~~~l~~~a~~~A~~ia~~~~~~~~~~~~k~~~~~~~ 220 (239)
T PLN02267 184 SAEETVEAAVRLGEELAARKWNGEVYASIRKSLLPEV 220 (239)
T ss_pred CHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHH
Confidence 5 68999999999999987 6778999999998754
No 73
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=99.95 E-value=9.8e-28 Score=195.63 Aligned_cols=109 Identities=22% Similarity=0.357 Sum_probs=104.2
Q ss_pred hhchHHHHHHHHcCeeEecCCeEEecccccccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCcc
Q psy9281 34 IYLGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPE 113 (152)
Q Consensus 34 ~a~G~G~~lal~cD~ria~~~a~f~~pe~~~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~ 113 (152)
+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|. .++++++||++++++||+++||||+++|++
T Consensus 143 ~a~GGG~~Lal~cD~rvate~a~fa~PE~~iGl~Pd~G~s~~L~rl~G~-~a~~L~LTG~~i~A~eA~~~GLv~~vVp~~ 221 (401)
T PLN02157 143 VTMGGGTGVSIPGTFRVATDRTIFATPETIIGFHPDAGASFNLSHLPGR-LGEYLGLTGLKLSGAEMLACGLATHYIRSE 221 (401)
T ss_pred eEeehhHHHHHhCCEEEEeCCCEEEChhhhcCCCCCccHHHHHHHhhhH-HHHHHHHcCCcCCHHHHHHcCCceEEeCHh
Confidence 9999999999999999999999999999999999999999999999996 899999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc
Q psy9281 114 KLLEETIKLAERIGEHSPLIVTQVKEAVNID 144 (152)
Q Consensus 114 ~l~~~~~~~a~~l~~~~~~a~~~~K~~l~~~ 144 (152)
++ +.+.+++.+++..+|.++..+|+.++..
T Consensus 222 ~l-~~~~~~~~~i~~~~p~av~~~k~~~~~~ 251 (401)
T PLN02157 222 EI-PVMEEQLKKLLTDDPSVVESCLEKCAEV 251 (401)
T ss_pred HH-HHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 98 6788999999999999999999998765
No 74
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=99.95 E-value=8.1e-28 Score=202.70 Aligned_cols=118 Identities=21% Similarity=0.286 Sum_probs=112.0
Q ss_pred hhchHH-HHHHHHcCeeEec-------CCeEEecccccccccCCccHHHHHHHH-hCHHHHHHH--HHcCCCCCHHHHHH
Q psy9281 34 IYLGGG-CELAMMCDIIYAG-------EKAKFGQPEIIIGTMPGAGGTQRLTRA-AGKSNAMEI--CLTGNQFTAQEAKE 102 (152)
Q Consensus 34 ~a~G~G-~~lal~cD~ria~-------~~a~f~~pe~~~G~~p~~~~~~~l~~~-~g~~~a~~l--ll~g~~~~a~ea~~ 102 (152)
+|+||| ++|+++||+||++ ++++|++||+++|++|+.+++++|+++ +|.++++++ +++|++++++||++
T Consensus 380 ~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~pe~~~Gl~p~~gg~~~L~r~~vG~~~A~~~~l~~tg~~i~A~eA~~ 459 (550)
T PRK08184 380 SCFAGTLAELALAADRSYMLALPDDNDPAPAITLSALNFGLYPMVNGLSRLARRFYGEPDPLAAVRAKIGQPLDADAAEE 459 (550)
T ss_pred ceehhHHHHHHHHCChhhhcCCCCCCCCCCEEECccccccCCCCCCcHHHhHHHhcChHHHHHHHHHHhCCcCCHHHHHH
Confidence 899999 9999999999999 999999999999999999999999998 699999997 58999999999999
Q ss_pred cCCccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHhccccCCCCC
Q psy9281 103 MGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVKEAVNIDDTEGLNH 151 (152)
Q Consensus 103 ~Glv~~v~~~~~l~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~ 151 (152)
+||||+++|++++++++.++++++++.||.+++.+|++++....++++.
T Consensus 460 ~GLv~~vv~~~~l~~~a~~~a~~ia~~~p~a~~~~K~~l~~~~~~~~~~ 508 (550)
T PRK08184 460 LGLVTAAPDDIDWEDEVRIALEERASLSPDALTGMEANLRFAGPETMET 508 (550)
T ss_pred cCCcccccChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHH
Confidence 9999999999999999999999999999999999999999887776653
No 75
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=99.95 E-value=1.5e-27 Score=200.65 Aligned_cols=118 Identities=20% Similarity=0.249 Sum_probs=112.1
Q ss_pred hhchHH-HHHHHHcCeeEe-------cCCeEEecccccccccCCccHHHHHHHHh-CHHHH--HHHHHcCCCCCHHHHHH
Q psy9281 34 IYLGGG-CELAMMCDIIYA-------GEKAKFGQPEIIIGTMPGAGGTQRLTRAA-GKSNA--MEICLTGNQFTAQEAKE 102 (152)
Q Consensus 34 ~a~G~G-~~lal~cD~ria-------~~~a~f~~pe~~~G~~p~~~~~~~l~~~~-g~~~a--~~lll~g~~~~a~ea~~ 102 (152)
+|+||| ++|+++||+||+ +++++|++||+++|++|+++++++|++++ |.+++ ++++++|++++++||++
T Consensus 376 ~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~~e~~lGl~p~~gg~~~L~~~v~G~~~a~~~~~~ltg~~i~A~eA~~ 455 (546)
T TIGR03222 376 SCFAGTLAELAFAADRSYMLAFPDNNDPEPAITLSELNFGLYPMVNGLSRLATRFYAEPAPVAAVRDKIGQALDAEEAER 455 (546)
T ss_pred eEeHHHHHHHHHhCceeeecCCCCCCCCCCEEeCCccccccCCCcCcHHHHHHHhcCchhHHHHHHHHhCCCCCHHHHHH
Confidence 799999 999999999999 89999999999999999999999999998 99888 55999999999999999
Q ss_pred cCCccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHhccccCCCCC
Q psy9281 103 MGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVKEAVNIDDTEGLNH 151 (152)
Q Consensus 103 ~Glv~~v~~~~~l~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~ 151 (152)
+||||+++|++++.+++.+++++++..||.+++.+|+.++.....+++.
T Consensus 456 ~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~ 504 (546)
T TIGR03222 456 LGLVTAAPDDIDWEDEIRIALEERASFSPDALTGLEANLRFAGPETMET 504 (546)
T ss_pred cCCcccccCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCcChhh
Confidence 9999999999999999999999999999999999999999887776653
No 76
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=99.95 E-value=2.8e-27 Score=189.12 Aligned_cols=110 Identities=25% Similarity=0.320 Sum_probs=104.5
Q ss_pred hhchHHHHHHHHcCeeEecCCeEEecccccccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCcc
Q psy9281 34 IYLGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPE 113 (152)
Q Consensus 34 ~a~G~G~~lal~cD~ria~~~a~f~~pe~~~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~ 113 (152)
+|+|||++|+++||+||++++++|++||+++|++|+++++++|++++|..+|++++++|++++++||+++|||++++|++
T Consensus 134 ~AiGGGleLALaCDlrIAse~A~Fg~PE~rlGl~P~~Ggt~rLprlvG~~rA~~llltGe~~sA~EA~~~GLVd~VVp~~ 213 (360)
T TIGR03200 134 MRIGGGQEIGMAADFTIAQDLANFGQAGPKHGSAPIGGATDFLPLMIGCEQAMVSGTLCEPWSAHKAKRLGIIMDVVPAL 213 (360)
T ss_pred EeeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhhCHHHHHHHHHhCCcCcHHHHHHcCChheecCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hH------------HHHHHHHHHHHhcCCHH--HHHHHHHHHhc
Q psy9281 114 KL------------LEETIKLAERIGEHSPL--IVTQVKEAVNI 143 (152)
Q Consensus 114 ~l------------~~~~~~~a~~l~~~~~~--a~~~~K~~l~~ 143 (152)
++ ++.+.++++.+...++. +.+..|.++..
T Consensus 214 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ 257 (360)
T TIGR03200 214 KVDGKFVANPLVVTDRYLDEFGRIVHGEFKAGDELKAGKELIKQ 257 (360)
T ss_pred hcCcchhcCcccchHHHHHHHhHHhcCCCcchhHHHHHHHHHhc
Confidence 88 78888889888888776 88999998876
No 77
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.94 E-value=6.3e-27 Score=203.00 Aligned_cols=116 Identities=37% Similarity=0.672 Sum_probs=105.5
Q ss_pred hhchHHHHHHHHcCeeEecCC--eEEecccccccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCC
Q psy9281 34 IYLGGGCELAMMCDIIYAGEK--AKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFP 111 (152)
Q Consensus 34 ~a~G~G~~lal~cD~ria~~~--a~f~~pe~~~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~ 111 (152)
+|+|||++|+++||+||++++ ++|++||+++|++|++|++++|++++|..+|++++++|++++++||+++||||+++|
T Consensus 111 ~a~GgG~~LalacD~ria~~~a~a~fg~pe~~lGl~p~~gg~~~L~r~vG~~~A~~llltG~~i~a~eA~~~GLv~~vv~ 190 (708)
T PRK11154 111 ACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMILTGKQLRAKQALKLGLVDDVVP 190 (708)
T ss_pred eeechHHHHHHhCCEEEEeCCCCceEeCccccCCCCCCccHHhHHHhhcCHHHHHHHHHhCCcCCHHHHHHCCCCcEecC
Confidence 999999999999999999986 589999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHH-------------HhcCCHH----------------------HHHHHHHHHhccccCCC
Q psy9281 112 PEKLLEETIKLAER-------------IGEHSPL----------------------IVTQVKEAVNIDDTEGL 149 (152)
Q Consensus 112 ~~~l~~~~~~~a~~-------------l~~~~~~----------------------a~~~~K~~l~~~~~~~l 149 (152)
++++.+++.+++++ +++.+|. +...+|+.++.....++
T Consensus 191 ~~~l~~~a~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~A~~~~k~~i~~~~~~~~ 263 (708)
T PRK11154 191 HSILLEVAVELAKKGKPARRPLPVRERLLEGNPLGRALLFKQARKKTLAKTQGNYPAPERILDVVRTGLEKGM 263 (708)
T ss_pred hHHHHHHHHHHHHhcCCccCcCCchhhhcccCchhHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHhcCCH
Confidence 99999999999988 4555553 67888888887655444
No 78
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.94 E-value=1.6e-26 Score=200.53 Aligned_cols=96 Identities=39% Similarity=0.624 Sum_probs=94.0
Q ss_pred hhchHHHHHHHHcCeeEecCCeEEecccccccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCcc
Q psy9281 34 IYLGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPE 113 (152)
Q Consensus 34 ~a~G~G~~lal~cD~ria~~~a~f~~pe~~~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~ 113 (152)
+|+|||++|+++||+||++++++|++||+++|++|+.+++++|++++|..+|++++++|++++++||+++||||+++|++
T Consensus 112 ~a~GgG~~LAlacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~rlvG~~~A~~llltG~~~~A~eA~~~GLv~~vv~~~ 191 (715)
T PRK11730 112 YALGGGCECVLATDYRVASPDARIGLPETKLGIMPGFGGTVRLPRLIGADNALEWIAAGKDVRAEDALKVGAVDAVVAPE 191 (715)
T ss_pred EeehHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCchHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHHCCCCeEecCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcC
Q psy9281 114 KLLEETIKLAERIGEH 129 (152)
Q Consensus 114 ~l~~~~~~~a~~l~~~ 129 (152)
++.+++.+++++++..
T Consensus 192 ~l~~~a~~~a~~la~~ 207 (715)
T PRK11730 192 KLQEAALALLKQAIAG 207 (715)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 9999999999999865
No 79
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=99.94 E-value=2.1e-26 Score=186.99 Aligned_cols=108 Identities=26% Similarity=0.449 Sum_probs=102.0
Q ss_pred hhchHHHHHHHHcCeeEecCCeEEecccccccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCcc
Q psy9281 34 IYLGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPE 113 (152)
Q Consensus 34 ~a~G~G~~lal~cD~ria~~~a~f~~pe~~~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~ 113 (152)
+|+|||++|+++||+||++++++|++||+++|++|+.|++++|++++|. .++++++||+++++.||+++||||+++|++
T Consensus 115 ~a~GGG~~Lal~~D~rvate~a~f~mPE~~iGl~Pd~G~s~~L~rl~G~-~~~~l~LTG~~i~a~eA~~~GLv~~vv~~~ 193 (381)
T PLN02988 115 IVMGGGAGVSVHGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGF-FGEYVGLTGARLDGAEMLACGLATHFVPST 193 (381)
T ss_pred eEeehhhHHhhcCCeEEEcCCcEEeChhhhcCcCCCccHHHHHHHHHHH-HHHHHHHcCCCCCHHHHHHcCCceEecCHh
Confidence 9999999999999999999999999999999999999999999999997 689999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q psy9281 114 KLLEETIKLAERIGEHSPLIVTQVKEAVNI 143 (152)
Q Consensus 114 ~l~~~~~~~a~~l~~~~~~a~~~~K~~l~~ 143 (152)
++.+.+.+++ +++..+|.++..+|+.++.
T Consensus 194 ~l~~~~~~la-~~~~~~p~~~~~~~~~~~~ 222 (381)
T PLN02988 194 RLTALEADLC-RIGSNDPTFASTILDAYTQ 222 (381)
T ss_pred HHHHHHHHHH-HhhccCHHHHHHHHHHhhc
Confidence 9999888888 7777888889999988764
No 80
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=99.94 E-value=2.7e-26 Score=198.77 Aligned_cols=101 Identities=40% Similarity=0.709 Sum_probs=94.8
Q ss_pred hhchHHHHHHHHcCeeEecCC--eEEecccccccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCC
Q psy9281 34 IYLGGGCELAMMCDIIYAGEK--AKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFP 111 (152)
Q Consensus 34 ~a~G~G~~lal~cD~ria~~~--a~f~~pe~~~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~ 111 (152)
+|+|||++|+++||+||++++ ++|++||+++|++|+.+++++|++++|..++++++++|++++++||+++||||+++|
T Consensus 106 ~a~GgG~~LaLacD~ria~~~~~a~fg~pev~lGl~p~~g~~~~L~r~vG~~~A~~llltG~~~~a~eA~~~GLV~~vv~ 185 (699)
T TIGR02440 106 ACLGGGLELALACHSRVCSDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMILTGKQLRAKQALKLGLVDDVVP 185 (699)
T ss_pred EeecHHHHHHHhCCEEEEcCCCCcEEechhhcccCCCCccHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHhCCCCcEecC
Confidence 999999999999999999976 799999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHH-------------HHhcCCHHHH
Q psy9281 112 PEKLLEETIKLAE-------------RIGEHSPLIV 134 (152)
Q Consensus 112 ~~~l~~~~~~~a~-------------~l~~~~~~a~ 134 (152)
++++.+++.++++ +++..+|.+.
T Consensus 186 ~~~l~~~a~~~A~~~~~~~~~~~~~~~~~~~~~~a~ 221 (699)
T TIGR02440 186 QSILLDTAVEMALKGKPIRKPLSLQERLLEGTPLGR 221 (699)
T ss_pred hhHHHHHHHHHHHhCCCCCCCccchhhhcccCchhH
Confidence 9999999999998 5666666653
No 81
>KOG0016|consensus
Probab=99.93 E-value=2.1e-26 Score=174.76 Aligned_cols=140 Identities=30% Similarity=0.408 Sum_probs=126.9
Q ss_pred ccccCCCCCCcchhhhhhhchhhh----------hhh---h-----------------hhchHHHHHHHHcCeeEecCCe
Q psy9281 6 KLFILIDYEQKDLYRSKNLKFIQC----------LKI---W-----------------IYLGGGCELAMMCDIIYAGEKA 55 (152)
Q Consensus 6 k~Fs~~~caG~Dl~~~~~~~~~~~----------~~~---~-----------------~a~G~G~~lal~cD~ria~~~a 55 (152)
++|| +|.|+..+......+. ... + +|+|.|+.+...||+|+|++++
T Consensus 63 ~~f~----sG~Df~~~~~~~~~d~~~~~~~~~~~v~~~~~~v~~fi~f~Kplia~vNGPAIGlgasil~lcD~V~A~Dka 138 (266)
T KOG0016|consen 63 SYFC----SGLDFSPFAKALDDDANEESDKASKFVKNVSCFVNTFINFPKPLVALVNGPAIGLGASILPLCDYVWASDKA 138 (266)
T ss_pred cEEe----eccccchhhhcCCCcccccchhhHHHHHHHHHHHHHHhcCCCCEEEEecCCccchhhHHhhhhheEEeccce
Confidence 4677 9999998866543332 111 1 9999999999999999999999
Q ss_pred EEecccccccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCcchHHHHHHHHHHHHhcCCHHHHH
Q psy9281 56 KFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVT 135 (152)
Q Consensus 56 ~f~~pe~~~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~~l~~~~~~~a~~l~~~~~~a~~ 135 (152)
+|..|++++|+.|++++++++|++||...|.++++.|++++++||.+.|||+++++.+.+.+.++..+++++..+|.+++
T Consensus 139 ~F~TPfa~lGq~PEG~Ss~t~p~imG~~~A~E~ll~~~kltA~Ea~~~glVskif~~~tf~~~v~~~ikq~s~l~p~sl~ 218 (266)
T KOG0016|consen 139 WFQTPFAKLGQSPEGCSSVTLPKIMGSASANEMLLFGEKLTAQEACEKGLVSKIFPAETFNEEVLKKIKQYSKLSPESLL 218 (266)
T ss_pred EEeccchhcCCCCCcceeeeehHhhchhhHHHHHHhCCcccHHHHHhcCchhhhcChHHHHHHHHHHHHHHhcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccccCCC
Q psy9281 136 QVKEAVNIDDTEGL 149 (152)
Q Consensus 136 ~~K~~l~~~~~~~l 149 (152)
..|++++....+.+
T Consensus 219 ~~K~L~rs~~k~~l 232 (266)
T KOG0016|consen 219 GMKKLLRSNIKEEL 232 (266)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998766544
No 82
>KOG1681|consensus
Probab=99.92 E-value=5e-26 Score=170.25 Aligned_cols=116 Identities=34% Similarity=0.578 Sum_probs=110.7
Q ss_pred hhchHHHHHHHHcCeeEecCCeEEecccccccccCCccHHHHHHHHhC-HHHHHHHHHcCCCCCHHHHHHcCCccccCCc
Q psy9281 34 IYLGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAG-KSNAMEICLTGNQFTAQEAKEMGVVSKIFPP 112 (152)
Q Consensus 34 ~a~G~G~~lal~cD~ria~~~a~f~~pe~~~G~~p~~~~~~~l~~~~g-~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~ 112 (152)
+|+|+|+.|..+||+|++++++.|+.-|+.+|+..+.|...+||+.+| .++++++.+|+++|++.||++.|||++++|+
T Consensus 136 ~CiGagvDLiTAcDIRycsqDAffsvkEVDvglaADvGTL~RlpkvVGn~s~~~elafTar~f~a~EAl~~GLvSrvf~d 215 (292)
T KOG1681|consen 136 ACIGAGVDLITACDIRYCSQDAFFSVKEVDVGLAADVGTLNRLPKVVGNQSLARELAFTARKFSADEALDSGLVSRVFPD 215 (292)
T ss_pred hhccccccceeecceeeecccceeeeeeeeeehhhchhhHhhhhHHhcchHHHHHHHhhhhhcchhhhhhcCcchhhcCC
Confidence 999999999999999999999999999999999999999999999999 8999999999999999999999999999984
Q ss_pred -chHHHHHHHHHHHHhcCCHHHHHHHHHHHhccccCCC
Q psy9281 113 -EKLLEETIKLAERIGEHSPLIVTQVKEAVNIDDTEGL 149 (152)
Q Consensus 113 -~~l~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l 149 (152)
++++..+..+|+.|+.++|.++..||..++...+...
T Consensus 216 k~~ll~~~l~mA~~Ia~KSpvaVqgTK~~L~ysrehsv 253 (292)
T KOG1681|consen 216 KEELLNGALPMAELIASKSPVAVQGTKENLLYSREHSV 253 (292)
T ss_pred HHHHHhhhHHHHHHhccCCceeeechHHHHHHHhhhhh
Confidence 7899999999999999999999999999987665543
No 83
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=99.91 E-value=1.5e-24 Score=188.14 Aligned_cols=95 Identities=38% Similarity=0.621 Sum_probs=91.7
Q ss_pred hhchHHHHHHHHcCeeEecCCeEEecccccccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCcc
Q psy9281 34 IYLGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPE 113 (152)
Q Consensus 34 ~a~G~G~~lal~cD~ria~~~a~f~~pe~~~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~ 113 (152)
+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|++++++|++++++||+++||||+++|++
T Consensus 112 ~alGGGleLalacD~ria~~~a~fglPEv~lGl~Pg~Ggt~rL~rliG~~~A~~llltG~~~~A~eA~~~GLvd~vv~~~ 191 (714)
T TIGR02437 112 IALGGGCECVLATDFRIADDTAKIGLPETKLGIMPGFGGTVRLPRVIGADNALEWIASGKENRAEDALKVGAVDAVVTAD 191 (714)
T ss_pred eeecHHHHHHHhCCEEEEeCCCEEecchhhcCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHCCCCcEeeChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhc
Q psy9281 114 KLLEETIKLAERIGE 128 (152)
Q Consensus 114 ~l~~~~~~~a~~l~~ 128 (152)
++.+.+.++++++..
T Consensus 192 ~l~~~a~~~a~~~~~ 206 (714)
T TIGR02437 192 KLGAAALQLLKDAIN 206 (714)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999977543
No 84
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=99.91 E-value=3.5e-24 Score=158.97 Aligned_cols=117 Identities=45% Similarity=0.712 Sum_probs=104.5
Q ss_pred cccccCCCCCCcchhhhhhhchhh-----h-------hhhh-------------hhchHHHHHHHHcCeeEecCCeEEec
Q psy9281 5 EKLFILIDYEQKDLYRSKNLKFIQ-----C-------LKIW-------------IYLGGGCELAMMCDIIYAGEKAKFGQ 59 (152)
Q Consensus 5 ~k~Fs~~~caG~Dl~~~~~~~~~~-----~-------~~~~-------------~a~G~G~~lal~cD~ria~~~a~f~~ 59 (152)
.++|| +|+|++++.+..... . ...+ +|+|+|+.++++||+||++++++|++
T Consensus 53 ~~~Fs----~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~Ia~v~G~a~g~G~~la~~~D~~i~~~~~~~~~ 128 (195)
T cd06558 53 GKAFC----AGADLKELAALSDAGEEARAFIRELQELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDAKFGL 128 (195)
T ss_pred CCceE----eCcCHHHHhcccccchhHHHHHHHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEec
Confidence 57899 999999886654321 1 1111 99999999999999999999999999
Q ss_pred ccccccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCcchHHHHHHHHHHH
Q psy9281 60 PEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPEKLLEETIKLAER 125 (152)
Q Consensus 60 pe~~~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~~l~~~~~~~a~~ 125 (152)
||+++|+.|+.+..+++++++|.+.+++++++|++++++||+++|+|+++++.+++.+++.+++++
T Consensus 129 pe~~~G~~p~~g~~~~l~~~~g~~~a~~~~l~g~~~~a~ea~~~Glv~~~~~~~~l~~~a~~~a~~ 194 (195)
T cd06558 129 PEVKLGLVPGGGGTQRLPRLVGPARARELLLTGRRISAEEALELGLVDEVVPDEELLAAALELARR 194 (195)
T ss_pred hhhhcCCCCCCcHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCCeecChhHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999988888875
No 85
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=99.91 E-value=2.6e-24 Score=187.15 Aligned_cols=119 Identities=35% Similarity=0.607 Sum_probs=100.7
Q ss_pred cccccCCCCCCcchhhhhhhch-hh----------hhhhh-------------hhchHHHHHHHHcCeeEecCC--eEEe
Q psy9281 5 EKLFILIDYEQKDLYRSKNLKF-IQ----------CLKIW-------------IYLGGGCELAMMCDIIYAGEK--AKFG 58 (152)
Q Consensus 5 ~k~Fs~~~caG~Dl~~~~~~~~-~~----------~~~~~-------------~a~G~G~~lal~cD~ria~~~--a~f~ 58 (152)
.|+|| +|+||+++..... .. .+..+ +|+|||++|+++||+||++++ ++|+
T Consensus 69 g~~F~----aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAav~G~a~GgG~eLALacD~ria~~~a~a~fg 144 (737)
T TIGR02441 69 PGSFV----AGADIQMIAACKTAQEVTQLSQEGQEMFERIEKSQKPIVAAISGSCLGGGLELALACHYRIATKDRKTLLG 144 (737)
T ss_pred CCcce----eCcCHHHHhccCChHHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCCeEe
Confidence 36899 9999999853111 00 11111 999999999999999999987 5899
Q ss_pred cccccccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCc-------------chHHHHHHHHHHH
Q psy9281 59 QPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPP-------------EKLLEETIKLAER 125 (152)
Q Consensus 59 ~pe~~~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~-------------~~l~~~~~~~a~~ 125 (152)
+||+++|++|++|++++|++++|..+|++++++|++++++||+++||||+++|+ +++.+.+.++++.
T Consensus 145 lpEv~lGl~Pg~Ggt~rLprliG~~~A~~l~ltG~~i~a~eA~~~GLVd~vv~~~~~~~~~l~~~~~~~l~~~A~~~a~~ 224 (737)
T TIGR02441 145 LPEVMLGLLPGAGGTQRLPKLTGVPAALDMMLTGKKIRADRAKKMGIVDQLVDPLGPGLKPAEENTIEYLEEVAVKFAQG 224 (737)
T ss_pred cchhhhCCCCCccHhhhHHHhhCHHHHHHHHHcCCcCCHHHHHHCCCCeEecCCcccccccchhhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999986 4466777777766
Q ss_pred Hh
Q psy9281 126 IG 127 (152)
Q Consensus 126 l~ 127 (152)
++
T Consensus 225 l~ 226 (737)
T TIGR02441 225 LA 226 (737)
T ss_pred hh
Confidence 54
No 86
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=99.91 E-value=6.6e-24 Score=173.34 Aligned_cols=99 Identities=21% Similarity=0.345 Sum_probs=90.0
Q ss_pred hhchHHHHHHHHcCeeEecCCeEEecccccccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCcc
Q psy9281 34 IYLGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPE 113 (152)
Q Consensus 34 ~a~G~G~~lal~cD~ria~~~a~f~~pe~~~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~ 113 (152)
+|+|||++|+++||+||++++++|++||+++|++|+.|++++|+++.|. .++++++||++++++||+++||+|+++|++
T Consensus 148 ~amGGG~gLal~~D~rVate~a~famPE~~iGl~PdvG~s~~L~rl~g~-~g~~L~LTG~~i~a~eA~~~GLa~~~v~~~ 226 (407)
T PLN02851 148 ITMGCGAGISIPGMFRVVTDKTVFAHPEVQMGFHPDAGASYYLSRLPGY-LGEYLALTGQKLNGVEMIACGLATHYCLNA 226 (407)
T ss_pred EEeeHHHHHHHhCCEEEEeCCceEecchhccCCCCCccHHHHHHHhcCH-HHHHHHHhCCcCCHHHHHHCCCceeecCHh
Confidence 9999999999999999999999999999999999999999999999997 499999999999999999999999999998
Q ss_pred hHHHHHHHHHHHHhcCCHHHH
Q psy9281 114 KLLEETIKLAERIGEHSPLIV 134 (152)
Q Consensus 114 ~l~~~~~~~a~~l~~~~~~a~ 134 (152)
++ +.+.+.+.++...++.++
T Consensus 227 ~l-~~l~~~l~~~~~~~~~~~ 246 (407)
T PLN02851 227 RL-PLIEERLGKLLTDDPAVI 246 (407)
T ss_pred hH-HHHHHHHHhhccCCHHHH
Confidence 87 567777777665555544
No 87
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=99.91 E-value=2.8e-24 Score=180.94 Aligned_cols=99 Identities=28% Similarity=0.504 Sum_probs=94.1
Q ss_pred hhchHHHHHHHHcCeeEecCC--eEEeccccc-ccccCCccHHHHHH--HHhCHHHHHHHHHcCCCCCHHHHHHcCCccc
Q psy9281 34 IYLGGGCELAMMCDIIYAGEK--AKFGQPEII-IGTMPGAGGTQRLT--RAAGKSNAMEICLTGNQFTAQEAKEMGVVSK 108 (152)
Q Consensus 34 ~a~G~G~~lal~cD~ria~~~--a~f~~pe~~-~G~~p~~~~~~~l~--~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~ 108 (152)
+|+|||++|+++||+||++++ ++|++||++ +|++|++++..+++ +++|..+|++++++|++++++||+++||||+
T Consensus 129 ~a~GGG~~LALacD~rvAs~~a~a~f~~pEv~~lGl~P~~gg~~~l~~~~~vg~~~A~~llltG~~i~A~eA~~~GLV~~ 208 (546)
T TIGR03222 129 TCAGGGYELALACDEIMLVDDRSSSVSLPEVPLLGVLPGTGGLTRVTDKRRVRRDHADIFCTIEEGVRGKRAKEWRLVDE 208 (546)
T ss_pred EeehHHHHHHHhCCEEEEecCCCcEEEccchhccCcCCccchhhhccccchhCHHHHHHHHHcCCCccHHHHHHcCCceE
Confidence 999999999999999999986 799999997 99999999988887 6899999999999999999999999999999
Q ss_pred cCCcchHHHHHHHHHHHHhcCCHH
Q psy9281 109 IFPPEKLLEETIKLAERIGEHSPL 132 (152)
Q Consensus 109 v~~~~~l~~~~~~~a~~l~~~~~~ 132 (152)
++|++++.+++.+++++++..||.
T Consensus 209 vv~~~~l~~~a~~lA~~la~~~p~ 232 (546)
T TIGR03222 209 VVKPSQFDAAIAERAAELAAQSDR 232 (546)
T ss_pred EeChHHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999988763
No 88
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=99.91 E-value=4.5e-24 Score=180.07 Aligned_cols=99 Identities=27% Similarity=0.471 Sum_probs=94.3
Q ss_pred hhchHHHHHHHHcCeeEecCC--eEEeccccc-ccccCCccHHHHHH--HHhCHHHHHHHHHcCCCCCHHHHHHcCCccc
Q psy9281 34 IYLGGGCELAMMCDIIYAGEK--AKFGQPEII-IGTMPGAGGTQRLT--RAAGKSNAMEICLTGNQFTAQEAKEMGVVSK 108 (152)
Q Consensus 34 ~a~G~G~~lal~cD~ria~~~--a~f~~pe~~-~G~~p~~~~~~~l~--~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~ 108 (152)
+|+|||++|+++||+||++++ ++|++||++ +|++|+.++..+++ +++|+.++++++++|++++++||+++||||+
T Consensus 133 ~a~GGG~~LALacD~rIas~~~~a~fg~pEv~~~Gl~P~~gg~~rl~~~~~vg~~~A~~llltG~~i~AeeA~~~GLVd~ 212 (550)
T PRK08184 133 TCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGVLPGTGGLTRVTDKRKVRRDLADIFCTIEEGVRGKRAVDWRLVDE 212 (550)
T ss_pred EeehHHHHHHHhCCEEEEecCCCcEEEccchhccccCCCcchHHHhhhhhhcCHHHHHHHHHhCCcccHHHHHHcCCccE
Confidence 999999999999999999987 899999997 99999999998898 6799999999999999999999999999999
Q ss_pred cCCcchHHHHHHHHHHHHhcCCHH
Q psy9281 109 IFPPEKLLEETIKLAERIGEHSPL 132 (152)
Q Consensus 109 v~~~~~l~~~~~~~a~~l~~~~~~ 132 (152)
++|++++.+++.+++++|+..||.
T Consensus 213 vv~~d~l~~~a~~~A~~ia~~~~~ 236 (550)
T PRK08184 213 VVKPSKFDAKVAERAAELAAASDR 236 (550)
T ss_pred eeCHHHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999988764
No 89
>KOG1682|consensus
Probab=99.87 E-value=1.2e-22 Score=150.19 Aligned_cols=138 Identities=26% Similarity=0.346 Sum_probs=122.3
Q ss_pred cccccCCCCCCcchhhhhhhchhhh----hhhh--------------------hhchHHHHHHHHcCeeEecCCeEEecc
Q psy9281 5 EKLFILIDYEQKDLYRSKNLKFIQC----LKIW--------------------IYLGGGCELAMMCDIIYAGEKAKFGQP 60 (152)
Q Consensus 5 ~k~Fs~~~caG~Dl~~~~~~~~~~~----~~~~--------------------~a~G~G~~lal~cD~ria~~~a~f~~p 60 (152)
-|.|| +|.||+++.+....+. +... ++..+|+.|..+||+++++++++|..|
T Consensus 86 GkifS----aGH~LKELt~e~g~d~haevFqtc~dvmn~Irn~pVPVia~VNG~AaAAGcQLVaSCD~vVa~k~SkF~tP 161 (287)
T KOG1682|consen 86 GKIFS----AGHNLKELTNEPGSDIHAEVFQTCTDVMNDIRNLPVPVIAKVNGYAAAAGCQLVASCDMVVATKNSKFSTP 161 (287)
T ss_pred Ccccc----ccccHHHhhcCccchHHHHHHHHHHHHHHHHhcCCCceEEEecchhhhccceEEEeeeEEEEecCccccCC
Confidence 36899 9999999976543322 1111 888999999999999999999999999
Q ss_pred cccccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy9281 61 EIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVKEA 140 (152)
Q Consensus 61 e~~~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~~l~~~~~~~a~~l~~~~~~a~~~~K~~ 140 (152)
..++|++....+.. +.|.+++..+.+|++||.+++++||+..|||++++|+++++.++.++.+.|...++..+...|..
T Consensus 162 G~~vGlFCSTPGvA-laRavpRkva~~ML~Tg~Pi~~eeAl~sGlvskvVp~~el~~e~~~i~~~i~~~srav~slgk~f 240 (287)
T KOG1682|consen 162 GAGVGLFCSTPGVA-LARAVPRKVAAYMLMTGLPITGEEALISGLVSKVVPAEELDKEIEEITNAIKAKSRAVISLGKEF 240 (287)
T ss_pred CCceeeEecCcchh-HhhhcchhHHHHHHHhCCCCchHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 99999998887777 99999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HhccccC
Q psy9281 141 VNIDDTE 147 (152)
Q Consensus 141 l~~~~~~ 147 (152)
.+.+...
T Consensus 241 ~y~q~~m 247 (287)
T KOG1682|consen 241 YYKQLAM 247 (287)
T ss_pred HHHHHHH
Confidence 8765543
No 90
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=99.83 E-value=4.9e-21 Score=142.64 Aligned_cols=111 Identities=34% Similarity=0.563 Sum_probs=105.7
Q ss_pred hhchHHHHHHHHcCeeEecCCeEEecccccccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCcc
Q psy9281 34 IYLGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPE 113 (152)
Q Consensus 34 ~a~G~G~~lal~cD~ria~~~a~f~~pe~~~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~ 113 (152)
+++|||=.|-+.||+.||+++++|+....++|-+-++.++..|.+.+|.++|+++.+.|+.++|+||+++|+||.|+|-+
T Consensus 126 ~AiGGGhvlhvvCDLTiAa~nA~FgQTgp~VGSFD~G~Gs~ylar~VGqKkArEIwfLcR~Y~A~eal~MGlVN~Vvp~~ 205 (282)
T COG0447 126 YAIGGGHVLHVVCDLTIAADNAIFGQTGPKVGSFDGGYGSSYLARIVGQKKAREIWFLCRQYDAEEALDMGLVNTVVPHA 205 (282)
T ss_pred EeccCccEEEEEeeeeeehhcchhcCCCCCcccccCcccHHHHHHHhhhhhhHHhhhhhhhccHHHHHhcCceeeeccHH
Confidence 99999999999999999999999999999999877666666699999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc
Q psy9281 114 KLLEETIKLAERIGEHSPLIVTQVKEAVNID 144 (152)
Q Consensus 114 ~l~~~~~~~a~~l~~~~~~a~~~~K~~l~~~ 144 (152)
+|+++..++++++..+||.+++..|.++|..
T Consensus 206 ~LE~e~v~W~~E~l~kSP~AlR~LK~Afnad 236 (282)
T COG0447 206 DLEKETVQWAREMLAKSPTALRMLKAAFNAD 236 (282)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHhcCC
Confidence 9999999999999999999999999999864
No 91
>KOG1684|consensus
Probab=99.75 E-value=7e-19 Score=139.18 Aligned_cols=105 Identities=27% Similarity=0.453 Sum_probs=89.9
Q ss_pred hhchHHHHHHHHcCeeEecCCeEEecccccccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCcc
Q psy9281 34 IYLGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPE 113 (152)
Q Consensus 34 ~a~G~G~~lal~cD~ria~~~a~f~~pe~~~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~ 113 (152)
.++|||++|...--||||+|++.|.+||+.+|++|+.|++++++|+-| ....++.+||+++++.|++..||.++.||.+
T Consensus 145 ITMGgG~GLS~hg~fRVATerT~~AmPEt~IGlfPDVG~Sy~lsrlpg-~lg~YLgLTG~rl~GaD~~~~GlATHyv~S~ 223 (401)
T KOG1684|consen 145 ITMGGGVGLSVHGRFRVATERTVFAMPETGIGLFPDVGASYFLSRLPG-YLGLYLGLTGQRLSGADALRCGLATHYVPSE 223 (401)
T ss_pred eeecCCcceeecceeEEeeccceecccccccccccCccceeehhhCcc-HHHHhhhhccceecchHHHHhcchhhccchh
Confidence 899999999999999999999999999999999999999999999988 6889999999999999999999999999988
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy9281 114 KLLEETIKLAERIGEHSPLIVTQVKE 139 (152)
Q Consensus 114 ~l~~~~~~~a~~l~~~~~~a~~~~K~ 139 (152)
++..--.++.+.+..-|...+..+-+
T Consensus 224 ~l~~Lee~L~~~l~~dp~~~I~~~l~ 249 (401)
T KOG1684|consen 224 KLPSLEERLLKNLNDDPQSVINETLE 249 (401)
T ss_pred hhhHHHHHHhhhcCCCcHHHHHHHHH
Confidence 77655555554444434344444433
No 92
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=99.52 E-value=2.9e-14 Score=105.89 Aligned_cols=107 Identities=17% Similarity=0.149 Sum_probs=82.4
Q ss_pred CCCCCcchhhhhhhch------hhh---hhh--hhhchHHHHHHHHcCeeEecCCeEEecccccccccCCc---------
Q psy9281 11 IDYEQKDLYRSKNLKF------IQC---LKI--WIYLGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGA--------- 70 (152)
Q Consensus 11 ~~caG~Dl~~~~~~~~------~~~---~~~--~~a~G~G~~lal~cD~ria~~~a~f~~pe~~~G~~p~~--------- 70 (152)
|||-|+++..-..... ... +.. -+|+|+|+.++++||+++++++++|+.++...+..+..
T Consensus 37 InSpGG~v~~~~~i~~~l~~~~kPvia~v~~~~G~AasgG~~iala~D~iva~p~a~~g~~~~~~~~~~~~~~~~~~~~~ 116 (187)
T cd07020 37 LDTPGGLLDSTREIVQAILASPVPVVVYVYPSGARAASAGTYILLAAHIAAMAPGTNIGAAHPVAIGGGGGSDPVMEKKI 116 (187)
T ss_pred EECCCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCchhHHHHHHHhCCceeECCCCcEEeccccccCCCCcchHHHHHHH
Confidence 5788988765433211 111 110 28999999999999999999999999999985544432
Q ss_pred -----cHHHHHHHHhCH--HHHHHHHHcCCCCCHHHHHHcCCccccCCcc-hHHH
Q psy9281 71 -----GGTQRLTRAAGK--SNAMEICLTGNQFTAQEAKEMGVVSKIFPPE-KLLE 117 (152)
Q Consensus 71 -----~~~~~l~~~~g~--~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~-~l~~ 117 (152)
.....++++.|. .++++++.+|+.++++||+++||||++++++ ++.+
T Consensus 117 ~~~~~~~~~~l~~~~G~~~~~a~~~l~~g~~~~a~eA~~~Glvd~v~~~~~~~~~ 171 (187)
T cd07020 117 LNDAVAYIRSLAELRGRNAEWAEKAVRESLSLTAEEALKLGVIDLIAADLNELLK 171 (187)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHcCCeecHHHHHHcCCcccccCCHHHHHH
Confidence 234468888887 7999999999999999999999999999875 5554
No 93
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=99.37 E-value=9.3e-13 Score=96.86 Aligned_cols=84 Identities=15% Similarity=0.160 Sum_probs=69.4
Q ss_pred hhchHHHHHHHHcCeeEecCCeEEecccccccccCCccHHH--------HHHHHhC--HHHHHHHHHcCCCCCHHHHHHc
Q psy9281 34 IYLGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQ--------RLTRAAG--KSNAMEICLTGNQFTAQEAKEM 103 (152)
Q Consensus 34 ~a~G~G~~lal~cD~ria~~~a~f~~pe~~~G~~p~~~~~~--------~l~~~~g--~~~a~~lll~g~~~~a~ea~~~ 103 (152)
.|.|+|+.|+++||+++++++++|+.+....+..+...... .+++..| +...++++..|+.++++||++.
T Consensus 81 ~a~g~g~~la~a~D~i~a~~~a~~~~~G~~~~~~~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A~~~ 160 (177)
T cd07014 81 NAASGGYWISTPANYIVANPSTLVGSIGIFGVQLADQLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDAKAN 160 (177)
T ss_pred chhHHHHHHHHhCCEEEECCCCeEEEechHhhHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHHHHc
Confidence 89999999999999999999999999988777433222222 3445555 8889999999999999999999
Q ss_pred CCccccCCcchHHH
Q psy9281 104 GVVSKIFPPEKLLE 117 (152)
Q Consensus 104 Glv~~v~~~~~l~~ 117 (152)
||||++.+.+++.+
T Consensus 161 GLVD~v~~~~e~~~ 174 (177)
T cd07014 161 GLVDSLGSFDDAVA 174 (177)
T ss_pred CCcccCCCHHHHHH
Confidence 99999998777654
No 94
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=99.14 E-value=2.1e-10 Score=82.90 Aligned_cols=99 Identities=17% Similarity=0.135 Sum_probs=72.1
Q ss_pred CCCCCcchhhhhhhchhhh------hhhh--hhchHHHHHHHHcCeeEecCCeEEecccccccccCCccH----------
Q psy9281 11 IDYEQKDLYRSKNLKFIQC------LKIW--IYLGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGG---------- 72 (152)
Q Consensus 11 ~~caG~Dl~~~~~~~~~~~------~~~~--~a~G~G~~lal~cD~ria~~~a~f~~pe~~~G~~p~~~~---------- 72 (152)
|||-|+++..-......-. .... .|.++|+.++++||.|+++++++|.++....+..+....
T Consensus 37 inspGG~~~~~~~i~~~i~~~~~pvi~~v~g~a~s~g~~ia~a~d~~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~ 116 (160)
T cd07016 37 INSPGGDVFAGLAIYNALKRHKGKVTVKIDGLAASAASVIAMAGDEVEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDK 116 (160)
T ss_pred EECCCCCHHHHHHHHHHHHhcCCCEEEEEcchHHhHHHHHHhcCCeEEECCCcEEEEECCccccCcCHHHHHHHHHHHHH
Confidence 5668888765433211100 0000 899999999999999999999999997777665443321
Q ss_pred -----HHHHHHHhC--HHHHHHHHHcCCCCCHHHHHHcCCcccc
Q psy9281 73 -----TQRLTRAAG--KSNAMEICLTGNQFTAQEAKEMGVVSKI 109 (152)
Q Consensus 73 -----~~~l~~~~g--~~~a~~lll~g~~~~a~ea~~~Glv~~v 109 (152)
...+.+..| ....++++..+..++++||+++||||++
T Consensus 117 ~~~~~~~~~~~~~g~~~~~i~~~~~~~~~l~a~eA~~~GliD~v 160 (160)
T cd07016 117 IDESIANAYAEKTGLSEEEISALMDAETWLTAQEAVELGFADEI 160 (160)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHhCCeECcHHHHHHcCCCCcC
Confidence 223667778 6788888888888999999999999975
No 95
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=98.68 E-value=6.9e-09 Score=89.03 Aligned_cols=92 Identities=20% Similarity=0.241 Sum_probs=72.0
Q ss_pred hhchHHHHHHHHcCeeEecCCeEE------eccc------ccccccCCccHHHHHHH-----------------------
Q psy9281 34 IYLGGGCELAMMCDIIYAGEKAKF------GQPE------IIIGTMPGAGGTQRLTR----------------------- 78 (152)
Q Consensus 34 ~a~G~G~~lal~cD~ria~~~a~f------~~pe------~~~G~~p~~~~~~~l~~----------------------- 78 (152)
.|.+||..++++||.+++++++.+ +.+. .++|+.++...+..+..
T Consensus 388 ~aaSggY~iA~aaD~I~a~p~t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~~~~s~~~~~t~~~~~~~~~~l~~~y 467 (584)
T TIGR00705 388 MAASGGYWIASAADYIVASPNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHELANVSLLRPLTAEDQAIMQLSVEAGY 467 (584)
T ss_pred ccccHHHHHHHhCCEEEECCCCeeecCEEEEEccCHHHHHHhcCCceEEEeccCcCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 789999999999999999999876 5553 57888876554433332
Q ss_pred -----HhCHHH-----HHHHHHcCCCCCHHHHHHcCCccccCCcchHHHHHHHHHHHHhcC
Q psy9281 79 -----AAGKSN-----AMEICLTGNQFTAQEAKEMGVVSKIFPPEKLLEETIKLAERIGEH 129 (152)
Q Consensus 79 -----~~g~~~-----a~~lll~g~~~~a~ea~~~Glv~~v~~~~~l~~~~~~~a~~l~~~ 129 (152)
+++..+ ..+.+.+|+.++++||++.||||++- .+ +++.+.+++++..
T Consensus 468 ~~F~~~Va~~R~l~~e~v~~ia~Grv~tg~eA~~~GLVD~ig---~~-~~Ai~~a~~la~~ 524 (584)
T TIGR00705 468 RRFLSVVSAGRNLTPTQVDKVAQGRVWTGEDAVSNGLVDALG---GL-DEAVAKAAKLAHC 524 (584)
T ss_pred HHHHHHHHhhCCCCHHHHHHHHhCCCcCHHHHHHcCCcccCC---CH-HHHHHHHHHHcCC
Confidence 555555 77888999999999999999999995 34 5677777777776
No 96
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=98.62 E-value=1.2e-07 Score=68.30 Aligned_cols=99 Identities=17% Similarity=0.104 Sum_probs=67.0
Q ss_pred CCCCCcchhhhhhhchh------hhhhhh--hhchHHHHHHHHcCeeEecCCeEEecccccccccCCc--cH-----H--
Q psy9281 11 IDYEQKDLYRSKNLKFI------QCLKIW--IYLGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGA--GG-----T-- 73 (152)
Q Consensus 11 ~~caG~Dl~~~~~~~~~------~~~~~~--~a~G~G~~lal~cD~ria~~~a~f~~pe~~~G~~p~~--~~-----~-- 73 (152)
++|.|.|+......... ..+... .|.++|+.|+++||.|++.+++.|+......+..... .. .
T Consensus 36 ~~s~Gg~~~~~~~i~~~l~~~~kpvva~~~g~~~s~g~~la~~~d~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~l 115 (161)
T cd00394 36 VNTPGGRVDAGMNIVDALQASRKPVIAYVGGQAASAGYYIATAANKIVMAPGTRVGSHGPIGGYGGNGNPTAQEADQRII 115 (161)
T ss_pred EECCCcCHHHHHHHHHHHHHhCCCEEEEECChhHHHHHHHHhCCCEEEECCCCEEEEeeeEEecCCCCChHHHHHHHHHH
Confidence 35689988654332111 001111 8899999999999999999999999988876654322 00 0
Q ss_pred ----HHHHHH------hCHHHHHHHHHcCCCCCHHHHHHcCCcccc
Q psy9281 74 ----QRLTRA------AGKSNAMEICLTGNQFTAQEAKEMGVVSKI 109 (152)
Q Consensus 74 ----~~l~~~------~g~~~a~~lll~g~~~~a~ea~~~Glv~~v 109 (152)
..+... +......+.+..+..++++||++.||||++
T Consensus 116 ~~~~~~~~~~v~~~r~~~~~~~~~~~~~~~~~~a~eA~~~GLvD~i 161 (161)
T cd00394 116 LYFIARFISLVAENRGQTTEKLEEDIEKDLVLTAQEALEYGLVDAL 161 (161)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHhcCCcEEcHHHHHHcCCcCcC
Confidence 011111 233456778888999999999999999975
No 97
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=98.35 E-value=1.7e-06 Score=63.88 Aligned_cols=105 Identities=22% Similarity=0.196 Sum_probs=66.8
Q ss_pred CCCCCcchhhhhhhchhhh------hhhh--hhchHHHHHHHHcCeeEecCCeEEecccccccccCCc----cHHHH---
Q psy9281 11 IDYEQKDLYRSKNLKFIQC------LKIW--IYLGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGA----GGTQR--- 75 (152)
Q Consensus 11 ~~caG~Dl~~~~~~~~~~~------~~~~--~a~G~G~~lal~cD~ria~~~a~f~~pe~~~G~~p~~----~~~~~--- 75 (152)
||+-|+++.........-. ...+ .|.++|+.++++||++++.+++.++.++.-.+-..+. -....
T Consensus 37 inspGG~v~~~~~I~~~l~~~~~pvva~V~g~AaSaG~~ia~a~d~i~m~p~a~iG~~~~v~~~~~~~~~~K~~~~~~~~ 116 (178)
T cd07021 37 IDTPGGRVDSALEIVDLILNSPIPTIAYVNDRAASAGALIALAADEIYMAPGATIGAAEPIPGDGNGAADEKVQSYWRAK 116 (178)
T ss_pred EECcCCCHHHHHHHHHHHHhCCCCEEEEECCchHHHHHHHHHhCCeEEECCCCeEecCeeEcCCCccchhHHHHHHHHHH
Confidence 4567777766544321111 0011 8999999999999999999999999985543211100 00111
Q ss_pred ---HHHHhC--HHHHHHHHHcC-------------CCCCHHHHHHcCCccccCCc-chH
Q psy9281 76 ---LTRAAG--KSNAMEICLTG-------------NQFTAQEAKEMGVVSKIFPP-EKL 115 (152)
Q Consensus 76 ---l~~~~g--~~~a~~lll~g-------------~~~~a~ea~~~Glv~~v~~~-~~l 115 (152)
+.++-| ...+..|+-.. ..++++||++.|+++.++++ ++|
T Consensus 117 ~~~~A~~~gr~~~~a~~mv~~~~~v~~~~~~~~~~l~lta~eA~~~g~~d~ia~~~~~l 175 (178)
T cd07021 117 MRAAAEKKGRDPDIAEAMVDKDIEVPGVGIKGGELLTLTADEALKVGYAEGIAGSLDEL 175 (178)
T ss_pred HHHHHHHhCCCHHHHHHHhhhhcccccccccccceeeeCHHHHHHhCCeEEEECCHHHH
Confidence 222223 55666776655 36999999999999999873 444
No 98
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=98.30 E-value=2.5e-07 Score=69.91 Aligned_cols=114 Identities=13% Similarity=0.152 Sum_probs=69.6
Q ss_pred CCCCcchhhhhhhchh-hhhhh--------h--hhchHHHHHHHHcCeeEecCCeEEeccccccccc----------CCc
Q psy9281 12 DYEQKDLYRSKNLKFI-QCLKI--------W--IYLGGGCELAMMCDIIYAGEKAKFGQPEIIIGTM----------PGA 70 (152)
Q Consensus 12 ~caG~Dl~~~~~~~~~-~~~~~--------~--~a~G~G~~lal~cD~ria~~~a~f~~pe~~~G~~----------p~~ 70 (152)
+|.|+|+..+...... ..++. . +|.|+|+.|+++||++++++++.++ .+|+. +..
T Consensus 47 ~s~Gg~~~~~~~~~~~l~~~~~~~kpVia~v~g~a~s~gy~la~~aD~i~a~~~a~~g----siGv~~~~~~~~~~l~k~ 122 (211)
T cd07019 47 NSPGGSVTASEVIRAELAAARAAGKPVVVSAGGAAASGGYWISTPANYIVANPSTLTG----SIGIFGVITTVENSLDSI 122 (211)
T ss_pred cCCCcCHHHHHHHHHHHHHHHhCCCCEEEEECCeehhHHHHHHHhCCEEEEcCCCEEE----EeEEEEEcCCHHHHHHhc
Confidence 4599999876433211 00111 1 7889999999999999999999988 45543 222
Q ss_pred cHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCcchHHHHHHHHHHHHhcCCHHHHHHHH
Q psy9281 71 GGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPEKLLEETIKLAERIGEHSPLIVTQVK 138 (152)
Q Consensus 71 ~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~~l~~~~~~~a~~l~~~~~~a~~~~K 138 (152)
|..+.+.+..|..++ ...+++|++ .+.++.+.+ +++.+...+.+.+-...++..++..+
T Consensus 123 Gv~~~~~~~~g~~k~----~~~~~~s~e--~r~~~~~~l---d~~~~~f~~~Va~~R~~~~~~l~~~~ 181 (211)
T cd07019 123 GVHTDGVSTSPLADV----SITRALPPE--AQLGLQLSI---ENGYKRFITLVADARHSTPEQIDKIA 181 (211)
T ss_pred CCceEEEEecCcccC----CCCCCCCHH--HHHHHHHHH---HHHHHHHHHHHHhhCCCCHHHHHHhc
Confidence 222222222344332 347777766 345555544 56666667777777777887766554
No 99
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=98.19 E-value=1.3e-05 Score=60.39 Aligned_cols=109 Identities=20% Similarity=0.194 Sum_probs=65.7
Q ss_pred CCCCCcchhhhhhhchhh-hh-------hhh--hhchHHHHHHHHcCeeEecCCeEEeccccc------------ccccC
Q psy9281 11 IDYEQKDLYRSKNLKFIQ-CL-------KIW--IYLGGGCELAMMCDIIYAGEKAKFGQPEII------------IGTMP 68 (152)
Q Consensus 11 ~~caG~Dl~~~~~~~~~~-~~-------~~~--~a~G~G~~lal~cD~ria~~~a~f~~pe~~------------~G~~p 68 (152)
++|.|+|+.........- .+ ... .|.++|+.++++||.+++++++.++...+. +|+-+
T Consensus 38 ~~s~Gg~~~~~~~l~~~i~~~~~~kpvia~v~g~a~s~g~~la~aaD~i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~ 117 (207)
T TIGR00706 38 INSPGGTVVASEEIYEKLKKLKAKKPVVASMGGVAASGGYYIAMAADEIVANPGTITGSIGVILQGANVEKLYEKLGIEF 117 (207)
T ss_pred ecCCCCCHHHHHHHHHHHHHhcCCCCEEEEECCccchHHHHHHhcCCEEEECCCCeEEeeeEEEecCCHHHHHHhCCceE
Confidence 456999986653322110 01 111 788999999999999999999876543332 23211
Q ss_pred ------------Cc------cHHHHHH-----------------HHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCcc
Q psy9281 69 ------------GA------GGTQRLT-----------------RAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPE 113 (152)
Q Consensus 69 ------------~~------~~~~~l~-----------------~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~ 113 (152)
.+ .....+. |.+.....++ +..++.+++++|++.||||++...+
T Consensus 118 ~~~~~g~~K~~~~~~~~~s~~~~e~~~~~l~~~~~~f~~~va~~R~~~~~~~~~-~~~~~~~~~~~A~~~gLvD~i~~~~ 196 (207)
T TIGR00706 118 EVIKSGEYKDIGSPTRELTPEERDILQNLVNESYEQFVQVVAKGRNLPVEDVKK-FADGRVFTGRQALKLRLVDKLGTED 196 (207)
T ss_pred EEEEcCCCcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH-HhcCCcccHHHHHHcCCCcccCCHH
Confidence 00 0000111 1122333333 4678899999999999999998766
Q ss_pred hHHHHHH
Q psy9281 114 KLLEETI 120 (152)
Q Consensus 114 ~l~~~~~ 120 (152)
++.+...
T Consensus 197 ~~~~~~~ 203 (207)
T TIGR00706 197 DALKWLA 203 (207)
T ss_pred HHHHHHH
Confidence 6654443
No 100
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=98.08 E-value=1.2e-05 Score=60.56 Aligned_cols=81 Identities=20% Similarity=0.239 Sum_probs=51.3
Q ss_pred hhchHHHHHHHHcCeeEecCCeEEecccc------------cccccCCcc------------------HHHHHHHHh---
Q psy9281 34 IYLGGGCELAMMCDIIYAGEKAKFGQPEI------------IIGTMPGAG------------------GTQRLTRAA--- 80 (152)
Q Consensus 34 ~a~G~G~~lal~cD~ria~~~a~f~~pe~------------~~G~~p~~~------------------~~~~l~~~~--- 80 (152)
+|.|+|+.++++||.+++++++.|+.... ++|+-+... ....+...+
T Consensus 76 ~~~s~g~~lA~aaD~i~a~~~s~~g~iG~~~~~~~~~~~l~k~Gi~~~~~~~g~~K~~~~~~~~~s~~~~e~~~~~l~~~ 155 (208)
T cd07023 76 VAASGGYYIAAAADKIVANPTTITGSIGVIGQGPNLEELLDKLGIERDTIKSGPGKDKGSPDRPLTEEERAILQALVDDI 155 (208)
T ss_pred cchhHHHHHHhhCCEEEECCCCeEEeCcEEEecCCHHHHHHhcCCceEEEecCCCccCCCCCCCCCHHHHHHHHHHHHHH
Confidence 78999999999999999999987743211 122211110 001111111
Q ss_pred ------------C--HHHHHHHHHcCCCCCHHHHHHcCCccccCCcchH
Q psy9281 81 ------------G--KSNAMEICLTGNQFTAQEAKEMGVVSKIFPPEKL 115 (152)
Q Consensus 81 ------------g--~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~~l 115 (152)
| .... +-+..|..+++++|++.||||++...++.
T Consensus 156 ~~~f~~~Va~~R~~~~~~~-~~~~~~~~~~a~~A~~~gLiD~i~~~~~~ 203 (208)
T cd07023 156 YDQFVDVVAEGRGMSGERL-DKLADGRVWTGRQALELGLVDELGGLDDA 203 (208)
T ss_pred HHHHHHHHHhcCCCCHHHH-HHhcCCcEEEHHHHHHcCCCcccCCHHHH
Confidence 1 1222 33567889999999999999999865443
No 101
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=97.96 E-value=2e-05 Score=59.63 Aligned_cols=81 Identities=19% Similarity=0.193 Sum_probs=52.9
Q ss_pred hhchHHHHHHHHcCeeEecCCeEEeccccc------------ccccCCc----------------c--HHHHHHH-----
Q psy9281 34 IYLGGGCELAMMCDIIYAGEKAKFGQPEII------------IGTMPGA----------------G--GTQRLTR----- 78 (152)
Q Consensus 34 ~a~G~G~~lal~cD~ria~~~a~f~~pe~~------------~G~~p~~----------------~--~~~~l~~----- 78 (152)
.|.|+|+.++++||++++++++.|+...+- +|+-+.. . .-..+..
T Consensus 83 ~a~s~gy~lA~~aD~i~a~~~a~~g~iG~~~~~~~~~~ll~k~Gi~~~~~~~g~~K~~~~~~~~~s~~~re~~~~~l~~~ 162 (214)
T cd07022 83 LAASAAYWIASAADRIVVTPTAGVGSIGVVASHVDQSKALEKAGLKVTLIFAGAHKVDGNPDEPLSDEARARLQAEVDAL 162 (214)
T ss_pred chhhHHHHHHhcCCEEEEcCCCeEEeeeEEEecCCHHHHHHhCCCeEEEEEcCCCccCCCCCCCCCHHHHHHHHHHHHHH
Confidence 799999999999999999999986543322 2221100 0 0000111
Q ss_pred ------------HhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCcchHH
Q psy9281 79 ------------AAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPEKLL 116 (152)
Q Consensus 79 ------------~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~~l~ 116 (152)
.+.....++++ |+.+++++|++.||||++...+++.
T Consensus 163 ~~~f~~~V~~~R~~~~~~~~~~~--~~~~~~~~Al~~gLvD~i~~~~~~~ 210 (214)
T cd07022 163 YAMFVAAVARNRGLSAAAVRATE--GGVFRGQEAVAAGLADAVGTLDDAL 210 (214)
T ss_pred HHHHHHHHHHhCCCCHHHHHHhh--cCeeeHHHHHHcCCCcccCCHHHHH
Confidence 12233444555 9999999999999999998755543
No 102
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=97.94 E-value=5.2e-05 Score=55.67 Aligned_cols=79 Identities=19% Similarity=0.214 Sum_probs=59.2
Q ss_pred hhchHHHHHHHHcCeeEecCCeEEecccccccccCC----c-c---HHH------HHHHHhC--HHHHHHHHHcCCCCCH
Q psy9281 34 IYLGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPG----A-G---GTQ------RLTRAAG--KSNAMEICLTGNQFTA 97 (152)
Q Consensus 34 ~a~G~G~~lal~cD~ria~~~a~f~~pe~~~G~~p~----~-~---~~~------~l~~~~g--~~~a~~lll~g~~~~a 97 (152)
.|..+|..++++||.+++.+++.++....-.|..+. . . ... -+.+.-| ...+..++.....+++
T Consensus 71 ~AaSag~~I~~a~~~i~m~p~s~iG~~~pi~~~g~~~~~~~~~~ki~~~~~~~~r~~A~~~Gr~~~~a~~~v~~~~~lta 150 (172)
T cd07015 71 SAASAGTYIALGSHLIAMAPGTSIGACRPILGYSQNGSIIEAPPKITNYFIAYIKSLAQESGRNATIAEEFITKDLSLTP 150 (172)
T ss_pred eehhHHHHHHHhcCceEECCCCEEEEccccccCCCCCccccchHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhhcCcCH
Confidence 567899999999999999999999988875432220 0 0 011 1222334 5678888888999999
Q ss_pred HHHHHcCCccccCCc
Q psy9281 98 QEAKEMGVVSKIFPP 112 (152)
Q Consensus 98 ~ea~~~Glv~~v~~~ 112 (152)
+||+++|++|.+++.
T Consensus 151 ~EA~~~G~iD~ia~~ 165 (172)
T cd07015 151 EEALKYGVIEVVARD 165 (172)
T ss_pred HHHHHcCCceeeeCC
Confidence 999999999999974
No 103
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=97.89 E-value=4.5e-05 Score=57.28 Aligned_cols=102 Identities=15% Similarity=0.070 Sum_probs=58.9
Q ss_pred CCCCCcchhhhhhhchhhh-----hhhh---hhchHHHHHHHHcC--eeEecCCeEEecccccccccCCccH--------
Q psy9281 11 IDYEQKDLYRSKNLKFIQC-----LKIW---IYLGGGCELAMMCD--IIYAGEKAKFGQPEIIIGTMPGAGG-------- 72 (152)
Q Consensus 11 ~~caG~Dl~~~~~~~~~~~-----~~~~---~a~G~G~~lal~cD--~ria~~~a~f~~pe~~~G~~p~~~~-------- 72 (152)
||+-|+|+..-....+.-. ...+ .|.++|..++++++ .|++.+++++.+....-|......-
T Consensus 68 InSpGG~v~~g~~I~d~i~~~~~~v~t~~~G~aaS~a~~I~~ag~~~~r~~~p~s~imih~p~~~~~G~a~di~~~a~~l 147 (200)
T PRK00277 68 INSPGGSVTAGLAIYDTMQFIKPDVSTICIGQAASMGAFLLAAGAKGKRFALPNSRIMIHQPLGGFQGQATDIEIHAREI 147 (200)
T ss_pred EECCCCcHHHHHHHHHHHHhcCCCEEEEEEeEeccHHHHHHhcCCCCCEEEcCCceEEeccCcccccCChhHHHHHHHHH
Confidence 5678888765332211100 1111 78888888888743 4666666665554332121100000
Q ss_pred -------HHHHHHHhC--HHHHHHHHHcCCCCCHHHHHHcCCccccCCc
Q psy9281 73 -------TQRLTRAAG--KSNAMEICLTGNQFTAQEAKEMGVVSKIFPP 112 (152)
Q Consensus 73 -------~~~l~~~~g--~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~ 112 (152)
...+.++.| .....+++-.+.-++++||+++||||++++.
T Consensus 148 ~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~Ii~~ 196 (200)
T PRK00277 148 LKLKKRLNEILAEHTGQPLEKIEKDTDRDNFMSAEEAKEYGLIDEVLTK 196 (200)
T ss_pred HHHHHHHHHHHHHHHCcCHHHHHHHhhCCccccHHHHHHcCCccEEeec
Confidence 011333334 4566677777778999999999999999864
No 104
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=97.75 E-value=0.00022 Score=57.06 Aligned_cols=93 Identities=18% Similarity=0.202 Sum_probs=58.0
Q ss_pred hhchHHHHHHHHcCeeEecCCeEEecccccccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCcc
Q psy9281 34 IYLGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPE 113 (152)
Q Consensus 34 ~a~G~G~~lal~cD~ria~~~a~f~~pe~~~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~ 113 (152)
.+.|||......||++++.+++.++. +.|.++++..+... .++.+. ...-+++++++++.|+||+++|..
T Consensus 202 eggsGGAlal~~aD~V~m~e~a~~sV------isPEg~a~Il~~d~---~~a~~a-A~~~~ita~dL~~~giiD~ii~Ep 271 (322)
T CHL00198 202 EGGSGGALGIGIGDSIMMLEYAVYTV------ATPEACAAILWKDS---KKSLDA-AEALKITSEDLKVLGIIDEIIPEP 271 (322)
T ss_pred cccHHHHHhhhcCCeEEEeCCeEEEe------cCHHHHHHHHhcch---hhHHHH-HHHcCCCHHHHHhCCCCeEeccCC
Confidence 67677765556699999999987765 33444444433332 233332 233479999999999999999721
Q ss_pred ------h-------HHHHHHHHHHHHhcCCHHHHHH
Q psy9281 114 ------K-------LLEETIKLAERIGEHSPLIVTQ 136 (152)
Q Consensus 114 ------~-------l~~~~~~~a~~l~~~~~~a~~~ 136 (152)
+ +.+...+....+...++..+..
T Consensus 272 ~ggah~~~~~~~~~l~~~~~~~l~~l~~~~~~~l~~ 307 (322)
T CHL00198 272 IGGAQADPASASKILKKKLIRQLDFLKILSPSELKA 307 (322)
T ss_pred CCccccCHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 1 2233344445556666665433
No 105
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=97.73 E-value=0.0002 Score=54.08 Aligned_cols=102 Identities=17% Similarity=0.142 Sum_probs=66.4
Q ss_pred CCCCCcchhhhhhhchhh-----hhhhh---hhchHHHHHHHHcC--eeEecCCeEEecccccc-cccCCccH-------
Q psy9281 11 IDYEQKDLYRSKNLKFIQ-----CLKIW---IYLGGGCELAMMCD--IIYAGEKAKFGQPEIII-GTMPGAGG------- 72 (152)
Q Consensus 11 ~~caG~Dl~~~~~~~~~~-----~~~~~---~a~G~G~~lal~cD--~ria~~~a~f~~pe~~~-G~~p~~~~------- 72 (152)
|||-|+|+..-......- ....+ .|.++|..++++|| .|++.+++.|.+..... |..-+...
T Consensus 72 INSpGG~v~~g~~I~d~i~~~~~~v~t~~~G~aaSaa~lI~~ag~~~~R~~~p~s~imiH~p~~~~~~~G~a~d~~~~~~ 151 (207)
T PRK12553 72 INSPGGSVTAGDAIYDTIQFIRPDVQTVCTGQAASAGAVLLAAGTPGKRFALPNARILIHQPSLGGGIRGQASDLEIQAR 151 (207)
T ss_pred EeCCCCcHHHHHHHHHHHHhcCCCcEEEEEeehhhHHHHHHHcCCcCcEEECCCchhhhcCccccCCCccCHHHHHHHHH
Confidence 567888886643321110 01111 78889999999999 58999999988876543 21111000
Q ss_pred ---------HHHHHHHhC--HHHHHHHHHcCCCCCHHHHHHcCCccccCCc
Q psy9281 73 ---------TQRLTRAAG--KSNAMEICLTGNQFTAQEAKEMGVVSKIFPP 112 (152)
Q Consensus 73 ---------~~~l~~~~g--~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~ 112 (152)
...+.++.| .....+++-.+.-++++||+++||||++++.
T Consensus 152 ~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lta~EA~e~GliD~I~~~ 202 (207)
T PRK12553 152 EILRMRERLERILAEHTGQSVEKIRKDTDRDKWLTAEEAKDYGLVDQIITS 202 (207)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHhcCccccHHHHHHcCCccEEcCc
Confidence 112333333 5666777778889999999999999999963
No 106
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=97.63 E-value=0.00035 Score=50.72 Aligned_cols=99 Identities=16% Similarity=0.097 Sum_probs=58.9
Q ss_pred CCCCCcchhhhhhhchhhh-----hhhh---hhchHHHHHHHHcC--eeEecCCeEEecccccccccCCccHHH------
Q psy9281 11 IDYEQKDLYRSKNLKFIQC-----LKIW---IYLGGGCELAMMCD--IIYAGEKAKFGQPEIIIGTMPGAGGTQ------ 74 (152)
Q Consensus 11 ~~caG~Dl~~~~~~~~~~~-----~~~~---~a~G~G~~lal~cD--~ria~~~a~f~~pe~~~G~~p~~~~~~------ 74 (152)
|||-|+++..-......-. +..+ .|.++|..+++++| .|++.+++++.+....-+......-..
T Consensus 37 InSpGG~v~~~~~i~~~i~~~~~~v~~~~~g~aaS~~~~i~~a~~~g~r~~~p~a~~~ih~~~~~~~g~~~d~~~~~~~l 116 (162)
T cd07013 37 INSPGGDVFAGMAIYDTIKFIKADVVTIIDGLAASMGSVIAMAGAKGKRFILPNAMMMIHQPWGGTLGDATDMRIYADLL 116 (162)
T ss_pred EECCCCcHHHHHHHHHHHHhcCCCceEEEEeehhhHHHHHHHcCCCCcEEEecCEEEEEccCcccccCCHHHHHHHHHHH
Confidence 6678888765433211100 1111 78899999999999 688888888776433222111100000
Q ss_pred ---------HHHHHhC--HHHHHHHHHcCCCCCHHHHHHcCCcccc
Q psy9281 75 ---------RLTRAAG--KSNAMEICLTGNQFTAQEAKEMGVVSKI 109 (152)
Q Consensus 75 ---------~l~~~~g--~~~a~~lll~g~~~~a~ea~~~Glv~~v 109 (152)
.+.+..| ....++++-.+.-++++||+++||||++
T Consensus 117 ~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~~sa~eA~~~GliD~i 162 (162)
T cd07013 117 LKVEGNLVSAYAHKTGQSEEELHADLERDTWLSAREAVEYGFADTI 162 (162)
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHHHcCCccccHHHHHHcCCCCcC
Confidence 1222223 4556666666666799999999999975
No 107
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=97.63 E-value=0.0004 Score=54.06 Aligned_cols=93 Identities=19% Similarity=0.235 Sum_probs=58.3
Q ss_pred hhchHHHHHHHHcCeeEecCCeEEecccccccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCcc
Q psy9281 34 IYLGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPE 113 (152)
Q Consensus 34 ~a~G~G~~lal~cD~ria~~~a~f~~pe~~~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~ 113 (152)
.|.|||......||++++.+++.++. +.|...+...+...--...+.+.+ ++++.++.+.|+||+++|..
T Consensus 146 ~~~gGgA~a~~~~D~v~m~~~a~~~v------~~pe~~a~il~~~~~~a~~aa~~~----~~~a~~l~~~g~iD~ii~e~ 215 (256)
T PRK12319 146 EGGSGGALALAVADQVWMLENTMYAV------LSPEGFASILWKDGSRATEAAELM----KITAGELLEMGVVDKVIPEH 215 (256)
T ss_pred CcCcHHHHHhhcCCEEEEecCceEEE------cCHHHHHHHHhcCcccHHHHHHHc----CCCHHHHHHCCCCcEecCCC
Confidence 77788888888999999999887665 233333333232221122333333 68999999999999999732
Q ss_pred ---------hHHHHHHHHHHHHhcCCHHHHHH
Q psy9281 114 ---------KLLEETIKLAERIGEHSPLIVTQ 136 (152)
Q Consensus 114 ---------~l~~~~~~~a~~l~~~~~~a~~~ 136 (152)
.+.+.+.+....+...|+..+..
T Consensus 216 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 247 (256)
T PRK12319 216 GYFSSEIIDMIKKNLIEELAQLSQKPLEQLLE 247 (256)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 12333444555556666665433
No 108
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=97.61 E-value=0.00035 Score=57.60 Aligned_cols=95 Identities=22% Similarity=0.196 Sum_probs=57.5
Q ss_pred hhchHHHHHHHHcCeeEecCCeEEecccccccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCcc
Q psy9281 34 IYLGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPE 113 (152)
Q Consensus 34 ~a~G~G~~lal~cD~ria~~~a~f~~pe~~~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~ 113 (152)
.+.+||..-...+|+++|.+++.++. +.|.++++..+....-...+.+ .-++++.++++.|+||+++|..
T Consensus 269 eGgSGGAlalg~aD~VlMle~A~ysV------isPEgaAsILwkd~~~A~eAAe----alkitA~dL~~~GiID~II~Ep 338 (431)
T PLN03230 269 EGGSGGALAIGCGNRMLMMENAVYYV------ASPEACAAILWKSAAAAPKAAE----ALRITAAELVKLGVVDEIVPEP 338 (431)
T ss_pred CCCcHHHHHhhcCCEEEEecCCEEEe------cCHHHHHHHHhccccchHHHHH----HcCCCHHHHHhCCCCeEeccCC
Confidence 44445544445689999999887654 2344445544444332333333 3389999999999999999731
Q ss_pred ------h-------HHHHHHHHHHHHhcCCHHHHHHHH
Q psy9281 114 ------K-------LLEETIKLAERIGEHSPLIVTQVK 138 (152)
Q Consensus 114 ------~-------l~~~~~~~a~~l~~~~~~a~~~~K 138 (152)
+ +.+.+.+....+...++..+...+
T Consensus 339 ~ggAh~d~~~~~~~l~~~i~~~l~~L~~~~~~~l~~~R 376 (431)
T PLN03230 339 LGGAHSDPLQASKNIKEVILRHMKELMKMDPEELLQDR 376 (431)
T ss_pred CCCcccCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 1 223344455556667776654433
No 109
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=97.58 E-value=0.00041 Score=52.01 Aligned_cols=106 Identities=11% Similarity=0.054 Sum_probs=63.7
Q ss_pred CCCCCcchhhhhhhchhh-----hhhhh---hhchHHHHHHHHcCe--eEecCCeEEecccccccccCCccHH-------
Q psy9281 11 IDYEQKDLYRSKNLKFIQ-----CLKIW---IYLGGGCELAMMCDI--IYAGEKAKFGQPEIIIGTMPGAGGT------- 73 (152)
Q Consensus 11 ~~caG~Dl~~~~~~~~~~-----~~~~~---~a~G~G~~lal~cD~--ria~~~a~f~~pe~~~G~~p~~~~~------- 73 (152)
|||-|+|+..-......- .+..+ .|..+|..++++||. |++.+++++..-...-+......-.
T Consensus 60 INSpGG~v~ag~aI~d~i~~~~~~V~t~v~G~AaSaaslIl~ag~~~~R~~~p~s~imiHqP~~~~~G~a~di~~~a~~l 139 (197)
T PRK14512 60 IDSEGGDIDAGFAIFNMIRFVKPKVFTIGVGLVASAAALIFLAAKKESRFSLPNARYLLHQPLSGFKGVATDIEIYANEL 139 (197)
T ss_pred EECCCCCHHHHHHHHHHHHhCCCCEEEEEEeeeHhHHHHHHhcCCcCceeECCCCcEEEEcCccccccCHHHHHHHHHHH
Confidence 567888876533221110 01111 788889999999986 8999988876544432221111100
Q ss_pred --------HHHHHHhC--HHHHHHHHHcCCCCCHHHHHHcCCccccCCc-chHH
Q psy9281 74 --------QRLTRAAG--KSNAMEICLTGNQFTAQEAKEMGVVSKIFPP-EKLL 116 (152)
Q Consensus 74 --------~~l~~~~g--~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~-~~l~ 116 (152)
..+.++-| .....+++-...-++++||+++||||++++. +++.
T Consensus 140 ~~~~~~i~~~~a~~tg~~~~~i~~~~~~d~~lta~EA~~yGliD~I~~~~~~l~ 193 (197)
T PRK14512 140 NKVKSELNDIIAKETGQELDKVEKDTDRDFWLDSSSAVKYGLVFEVVETRLELE 193 (197)
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHhhhcCcccCHHHHHHcCCccEeecCcHHhH
Confidence 01122223 3456666666777999999999999999974 4443
No 110
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=97.56 E-value=0.00053 Score=51.52 Aligned_cols=103 Identities=12% Similarity=-0.024 Sum_probs=64.6
Q ss_pred CCCCCcchhhhhhhchhhh-----hhhh---hhchHHHHHHHHcC--eeEecCCeEEecccccccccCCccHH-------
Q psy9281 11 IDYEQKDLYRSKNLKFIQC-----LKIW---IYLGGGCELAMMCD--IIYAGEKAKFGQPEIIIGTMPGAGGT------- 73 (152)
Q Consensus 11 ~~caG~Dl~~~~~~~~~~~-----~~~~---~a~G~G~~lal~cD--~ria~~~a~f~~pe~~~G~~p~~~~~------- 73 (152)
|||-|+|+..-....+.-. +..+ .|.+.|..+++++| -|++.++++|.+-....|..-+...-
T Consensus 67 INSpGG~v~~g~aIyd~m~~~~~~V~Tv~~G~AaS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~~~G~a~di~~~a~~ 146 (200)
T CHL00028 67 INSPGGSVISGLAIYDTMQFVKPDVHTICLGLAASMASFILAGGEITKRLAFPHARVMIHQPASSFYEGQASEFVLEAEE 146 (200)
T ss_pred EeCCCcchhhHHHHHHHHHhcCCCEEEEEEEehHHHHHHHHhCCCCCCEEecCCCeEEEecCccCcCCCCHHHHHHHHHH
Confidence 6678888765332211100 1111 77788889999998 59999999988877655521111100
Q ss_pred ---------HHHHHHhC--HHHHHHHHHcCCCCCHHHHHHcCCccccCCcc
Q psy9281 74 ---------QRLTRAAG--KSNAMEICLTGNQFTAQEAKEMGVVSKIFPPE 113 (152)
Q Consensus 74 ---------~~l~~~~g--~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~ 113 (152)
..+.++.| .....+.+-...-++|+||+++||||+++++.
T Consensus 147 l~~~~~~~~~~ya~~Tg~~~e~i~~~~~r~~~lta~EA~eyGliD~I~~~~ 197 (200)
T CHL00028 147 LLKLRETITRVYAQRTGKPLWVISEDMERDVFMSATEAKAYGIVDLVAVNN 197 (200)
T ss_pred HHHHHHHHHHHHHHHHCcCHHHHHHHhhcCccCCHHHHHHcCCCcEEeecC
Confidence 11222223 34555666666779999999999999998643
No 111
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=97.47 E-value=0.00078 Score=58.91 Aligned_cols=95 Identities=17% Similarity=0.101 Sum_probs=58.9
Q ss_pred hhchHHHHHHHHcCeeEecCCeEEecccccccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCcc
Q psy9281 34 IYLGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPE 113 (152)
Q Consensus 34 ~a~G~G~~lal~cD~ria~~~a~f~~pe~~~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~ 113 (152)
.|.|||......||+++|.+++.++. +.|.++++..|...- ++.+ ....-+++++++++.|+||.++|..
T Consensus 290 eggSGGAlA~g~aD~VlMle~A~~sV------isPEgaAsILwkd~~---~A~e-AAe~lkiTa~dL~~lGiiD~IIpEp 359 (762)
T PLN03229 290 EGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAK---AAPK-AAEKLRITAQELCRLQIADGIIPEP 359 (762)
T ss_pred CcchHHHHHhhcCCEEEEecCCeEEe------cCHHHHHHHHhcCcc---cHHH-HHHHcCCCHHHHHhCCCCeeeccCC
Confidence 77777877777799999998876544 234444443333222 2222 2334479999999999999999731
Q ss_pred ------h-------HHHHHHHHHHHHhcCCHHHHHHHH
Q psy9281 114 ------K-------LLEETIKLAERIGEHSPLIVTQVK 138 (152)
Q Consensus 114 ------~-------l~~~~~~~a~~l~~~~~~a~~~~K 138 (152)
+ +..........+...++..+...+
T Consensus 360 ~ggAh~d~~~~~~~l~~~i~~~L~~l~~~~~~~l~~~R 397 (762)
T PLN03229 360 LGGAHADPSWTSQQIKIAINENMDELGKMDTEELLKHR 397 (762)
T ss_pred CCccccCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 1 223334444555666776654443
No 112
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=97.41 E-value=0.0011 Score=49.50 Aligned_cols=101 Identities=13% Similarity=0.052 Sum_probs=62.3
Q ss_pred CCCCCcchhhhhhhchhh-----hhhhh---hhchHHHHHHHHcC--eeEecCCeEEecccccccccCCccHH-------
Q psy9281 11 IDYEQKDLYRSKNLKFIQ-----CLKIW---IYLGGGCELAMMCD--IIYAGEKAKFGQPEIIIGTMPGAGGT------- 73 (152)
Q Consensus 11 ~~caG~Dl~~~~~~~~~~-----~~~~~---~a~G~G~~lal~cD--~ria~~~a~f~~pe~~~G~~p~~~~~------- 73 (152)
|||-|+|+..-......- .+..+ .|..+|..+++++| .|++.++++|.+-+..-|......-.
T Consensus 63 InSpGG~v~~g~~I~d~l~~~~~~v~t~~~G~AaSaaslI~~aG~~~~r~~~p~s~imiH~p~~~~~G~a~d~~~~a~~l 142 (191)
T TIGR00493 63 INSPGGSITAGLAIYDTMQFIKPDVSTICIGQAASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQANEI 142 (191)
T ss_pred EECCCCCHHHHHHHHHHHHhcCCCEEEEEEEeeccHHHHHHhcCCCCcEEecCCceEEEecCcccccCCcchhHHHHHHH
Confidence 567888876543221110 01111 67777777777665 59999999988866543321111111
Q ss_pred --------HHHHHHhC--HHHHHHHHHcCCCCCHHHHHHcCCccccCC
Q psy9281 74 --------QRLTRAAG--KSNAMEICLTGNQFTAQEAKEMGVVSKIFP 111 (152)
Q Consensus 74 --------~~l~~~~g--~~~a~~lll~g~~~~a~ea~~~Glv~~v~~ 111 (152)
..+.++-| .....+.+-.+.-++++||+++||||+++.
T Consensus 143 ~~~~~~~~~~ya~~tg~~~~~i~~~~~~~~~lta~EA~~~GliD~ii~ 190 (191)
T TIGR00493 143 LRLKGLLNDILANHTGQSLEQIEKDTERDFFMSAEEAKEYGLIDSVLT 190 (191)
T ss_pred HHHHHHHHHHHHHHHCcCHHHHHHHhhCCccCcHHHHHHcCCccEEec
Confidence 01233333 456667777778899999999999999874
No 113
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=97.38 E-value=0.00049 Score=52.35 Aligned_cols=84 Identities=19% Similarity=0.115 Sum_probs=54.4
Q ss_pred hhchHHHHHHHHcCeeEecCCeEEecccccc------------cccCC---------ccHHH-----------HHHH---
Q psy9281 34 IYLGGGCELAMMCDIIYAGEKAKFGQPEIII------------GTMPG---------AGGTQ-----------RLTR--- 78 (152)
Q Consensus 34 ~a~G~G~~lal~cD~ria~~~a~f~~pe~~~------------G~~p~---------~~~~~-----------~l~~--- 78 (152)
.+.++|+.++++||.+++.+.+.++...+.. |+-+. .+..+ .+..
T Consensus 87 ~~~sggy~lasaad~I~a~p~~~vg~iGv~~~~~~~~~ll~klGv~~~~~~~G~~K~~~~~~~~~~~s~~~r~~~~~~l~ 166 (222)
T cd07018 87 GYSQGQYYLASAADEIYLNPSGSVELTGLSAETLFFKGLLDKLGVEVQVFRVGEYKSAVEPFTRDDMSPEAREQTQALLD 166 (222)
T ss_pred CCCchhhhhhhhCCEEEECCCceEEeeccchhhhhHHHHHHHcCCcEEEEEEeccccccchhhcccCCHHHHHHHHHHHH
Confidence 6788999999999999999999888753321 21110 00000 0111
Q ss_pred --------------HhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCcchHHHH
Q psy9281 79 --------------AAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPEKLLEE 118 (152)
Q Consensus 79 --------------~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~~l~~~ 118 (152)
.+.....++ +..|+.+++++|++.||||++...+++.+.
T Consensus 167 ~~~~~f~~~Va~~R~~~~~~~~~-~~~~~~~~~~~A~~~GLvD~i~~~~e~~~~ 219 (222)
T cd07018 167 SLWDQYLADVAASRGLSPDALEA-LIDLGGDSAEEALEAGLVDGLAYRDELEAR 219 (222)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHH-HHHcCCcHHHHHHHCCCCCcCCcHHHHHHH
Confidence 112233333 345899999999999999999976666543
No 114
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=97.36 E-value=0.00014 Score=53.41 Aligned_cols=101 Identities=17% Similarity=0.162 Sum_probs=62.7
Q ss_pred CCCCCcchhhhhhhchhhh-----hhhh---hhchHHHHHHHHcCe--eEecCCeEEecccccccccCCccHHH------
Q psy9281 11 IDYEQKDLYRSKNLKFIQC-----LKIW---IYLGGGCELAMMCDI--IYAGEKAKFGQPEIIIGTMPGAGGTQ------ 74 (152)
Q Consensus 11 ~~caG~Dl~~~~~~~~~~~-----~~~~---~a~G~G~~lal~cD~--ria~~~a~f~~pe~~~G~~p~~~~~~------ 74 (152)
|||-|+|+..-......-. +..+ .|..+|..++++||. |++.+++.|.+-+...+.........
T Consensus 53 INSpGG~v~~g~~i~~~i~~~~~~v~t~~~G~aaSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~g~~~~l~~~~~~l 132 (182)
T PF00574_consen 53 INSPGGDVDAGLAIYDAIRSSKAPVTTVVLGLAASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSGGNASELREQAKEL 132 (182)
T ss_dssp EEECEBCHHHHHHHHHHHHHSSSEEEEEEEEEEETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEEEEHHHHHHHHHHH
T ss_pred EcCCCCccHHHHHHHHHHHhcCCCeEEEEeCccccceehhhhcCCcCceeeeecCEEEeecceeecccccchhHHHHHHH
Confidence 5678888866433211100 1111 788899999999999 89999999988888665433111110
Q ss_pred ---------HHHHHhC--HHHHHHHHHcCCCCCHHHHHHcCCccccCC
Q psy9281 75 ---------RLTRAAG--KSNAMEICLTGNQFTAQEAKEMGVVSKIFP 111 (152)
Q Consensus 75 ---------~l~~~~g--~~~a~~lll~g~~~~a~ea~~~Glv~~v~~ 111 (152)
.+.++.| .....+++-...-++++||+++||||+++.
T Consensus 133 ~~~~~~~~~~~~~~tg~~~~~i~~~~~~~~~l~a~EA~~~GiiD~I~~ 180 (182)
T PF00574_consen 133 EKLNERIANIYAERTGLSKEEIEELMDRDTWLSAEEALEYGIIDEIIE 180 (182)
T ss_dssp HHHHHHHHHHHHHHHTS-HHHHHHHCSSTEEEEHHHHHHHTSSSEEES
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHhCCccccHHHHHHcCCCCEecc
Confidence 1122223 445556655556689999999999999975
No 115
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=97.31 E-value=0.00058 Score=49.90 Aligned_cols=76 Identities=21% Similarity=0.183 Sum_probs=54.6
Q ss_pred hhchHHHHHHHHcC--eeEecCCeEEecccccccccCCccH---------------HHHHHHHhC--HHHHHHHHHcCCC
Q psy9281 34 IYLGGGCELAMMCD--IIYAGEKAKFGQPEIIIGTMPGAGG---------------TQRLTRAAG--KSNAMEICLTGNQ 94 (152)
Q Consensus 34 ~a~G~G~~lal~cD--~ria~~~a~f~~pe~~~G~~p~~~~---------------~~~l~~~~g--~~~a~~lll~g~~ 94 (152)
.|.++|..+++++| .|++.+++.|.+-+...+..-...- ...+.++.| .....+++-.+.-
T Consensus 77 ~aaS~~~~i~~~g~~~~r~~~~~a~~~~h~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~~~~~ 156 (171)
T cd07017 77 LAASMGALLLAAGTKGKRYALPNSRIMIHQPLGGAGGQASDIEIQAKEILRLRRRLNEILAKHTGQPLEKIEKDTDRDRY 156 (171)
T ss_pred EehhHHHHHHHcCCCCCEEEccchHHHHcCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCcc
Confidence 78899999999999 7999999998887766554322100 001222223 3466677777888
Q ss_pred CCHHHHHHcCCcccc
Q psy9281 95 FTAQEAKEMGVVSKI 109 (152)
Q Consensus 95 ~~a~ea~~~Glv~~v 109 (152)
++++||+++|+||+|
T Consensus 157 lta~EA~e~GiiD~V 171 (171)
T cd07017 157 MSAEEAKEYGLIDKI 171 (171)
T ss_pred ccHHHHHHcCCCccC
Confidence 999999999999975
No 116
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=97.20 E-value=0.0026 Score=48.57 Aligned_cols=78 Identities=17% Similarity=0.090 Sum_probs=53.4
Q ss_pred hhchHHHHHHHHcCe--eEecCCeEEecccccccccCCccHHH---------------HHHHHhC--HHHHHHHHHcCCC
Q psy9281 34 IYLGGGCELAMMCDI--IYAGEKAKFGQPEIIIGTMPGAGGTQ---------------RLTRAAG--KSNAMEICLTGNQ 94 (152)
Q Consensus 34 ~a~G~G~~lal~cD~--ria~~~a~f~~pe~~~G~~p~~~~~~---------------~l~~~~g--~~~a~~lll~g~~ 94 (152)
.|.+.|..|++++|. |++.+++++.+-...-|......-.. .+.++.| .....+.+-...-
T Consensus 122 ~AAS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~~G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~I~~~~~rd~w 201 (221)
T PRK14514 122 MAASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQGQASDIEITAREIQKLKKELYTIIADHSGTPFDKVWADSDRDYW 201 (221)
T ss_pred EehhHHHHHHhcCCCCceeeCCCCEEEeccCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhcCcc
Confidence 778888999999996 89999999877665543321111010 1122334 3455566666777
Q ss_pred CCHHHHHHcCCccccCC
Q psy9281 95 FTAQEAKEMGVVSKIFP 111 (152)
Q Consensus 95 ~~a~ea~~~Glv~~v~~ 111 (152)
++|+||+++||||+|++
T Consensus 202 mtA~EA~eyGliD~Vi~ 218 (221)
T PRK14514 202 MTAQEAKEYGMIDEVLI 218 (221)
T ss_pred CCHHHHHHcCCccEEee
Confidence 99999999999999985
No 117
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=97.18 E-value=0.0028 Score=47.65 Aligned_cols=102 Identities=15% Similarity=0.134 Sum_probs=64.9
Q ss_pred CCCCCCcchhhhhhhchhh-----hhhhh---hhchHHHHHHHHcCe--eEecCCeEEecccccccccCCccHHH-----
Q psy9281 10 LIDYEQKDLYRSKNLKFIQ-----CLKIW---IYLGGGCELAMMCDI--IYAGEKAKFGQPEIIIGTMPGAGGTQ----- 74 (152)
Q Consensus 10 ~~~caG~Dl~~~~~~~~~~-----~~~~~---~a~G~G~~lal~cD~--ria~~~a~f~~pe~~~G~~p~~~~~~----- 74 (152)
.|||.|+|+..-....+.- .+..+ .|.+.|..+++++|- |++.+++++-+-....|.. +....
T Consensus 63 ~INSpGG~v~~GlaIyd~m~~~~~~V~Ti~~G~AaS~As~il~aG~kgkR~~~pna~iMIHqp~~~~~--G~a~di~~~a 140 (201)
T PRK14513 63 YINCPGGEVYAGLAIYDTMRYIKAPVSTICVGIAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFR--GNTPDLEVQA 140 (201)
T ss_pred EEECCCCchhhHHHHHHHHHhcCCCEEEEEEeeehhhHHHHHhcCCCCcEEecCCeEEEEecCCCCCC--CCHHHHHHHH
Confidence 3677898886543321110 01111 777888889999996 9999999987766654431 11111
Q ss_pred ------------HHHHHhC--HHHHHHHHHcCCCCCHHHHHHcCCccccCCcc
Q psy9281 75 ------------RLTRAAG--KSNAMEICLTGNQFTAQEAKEMGVVSKIFPPE 113 (152)
Q Consensus 75 ------------~l~~~~g--~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~ 113 (152)
.+.++.| ...-.+++-...-++|+||+++||||+++++.
T Consensus 141 ~el~~~~~~l~~iya~~Tg~~~~~I~~~~~rd~~msa~EA~eyGliD~I~~~~ 193 (201)
T PRK14513 141 KEVLFLRDTLVDIYHRHTDLPHEKLLRDMERDYFMSPEEAKAYGLIDSVIEPT 193 (201)
T ss_pred HHHHHHHHHHHHHHHHHHCcCHHHHHHHhccCcccCHHHHHHcCCCcEEeccC
Confidence 1122333 34455566556669999999999999999753
No 118
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=97.12 E-value=0.0025 Score=50.98 Aligned_cols=93 Identities=19% Similarity=0.178 Sum_probs=55.2
Q ss_pred hhchHHHHHHHHcCeeEecCCeEEecccccccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCcc
Q psy9281 34 IYLGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPE 113 (152)
Q Consensus 34 ~a~G~G~~lal~cD~ria~~~a~f~~pe~~~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~ 113 (152)
.|.|||..-...||++++.+++.++. +.|.++++..+... .++.+..- -.++++.++.+.|+||+++|..
T Consensus 199 eggsGGAla~~~aD~v~m~~~a~~sV------isPEg~a~Il~kd~---~~a~~aae-~~~~ta~~l~~~G~iD~II~ep 268 (316)
T TIGR00513 199 EGGSGGALAIGVGDKVNMLEYSTYSV------ISPEGCAAILWKDA---SKAPKAAE-AMKITAPDLKELGLIDSIIPEP 268 (316)
T ss_pred ccccHHHhhhccCCEEEEecCceEEe------cCHHHHHHHhccch---hhHHHHHH-HccCCHHHHHHCCCCeEeccCC
Confidence 66666665555699999998887654 23444444333322 12222222 2568999999999999999721
Q ss_pred ------h-------HHHHHHHHHHHHhcCCHHHHHH
Q psy9281 114 ------K-------LLEETIKLAERIGEHSPLIVTQ 136 (152)
Q Consensus 114 ------~-------l~~~~~~~a~~l~~~~~~a~~~ 136 (152)
+ +.+...+....+...++..+..
T Consensus 269 ~~ga~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~ 304 (316)
T TIGR00513 269 LGGAHRNPLAAAASLKEQLLADLATLDQLSTEELKN 304 (316)
T ss_pred CCccccCHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 1 2233344455556666665433
No 119
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=97.09 E-value=0.0037 Score=50.15 Aligned_cols=94 Identities=22% Similarity=0.241 Sum_probs=56.4
Q ss_pred hhchHHHHHHHHcCeeEecCCeEEecccccccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCcc
Q psy9281 34 IYLGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPPE 113 (152)
Q Consensus 34 ~a~G~G~~lal~cD~ria~~~a~f~~pe~~~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~ 113 (152)
.+.|||..-...||++++.+++.++. .++-+++..+-+. ..++.+..- ..++++.++.+.|+||+|+|..
T Consensus 199 eg~sGGAla~~~aD~v~m~~~A~~sv-------isPEg~a~Il~~~--~~~a~~aae-~~~ita~~l~~~g~iD~II~Ep 268 (319)
T PRK05724 199 EGGSGGALAIGVGDRVLMLEYSTYSV-------ISPEGCASILWKD--ASKAPEAAE-AMKITAQDLKELGIIDEIIPEP 268 (319)
T ss_pred CccHHHHHHHhccCeeeeecCceEee-------cCHHHHHHHHhcC--chhHHHHHH-HcCCCHHHHHHCCCceEeccCC
Confidence 66667765555699999888876554 3433333323222 223333333 5569999999999999999731
Q ss_pred ------h-------HHHHHHHHHHHHhcCCHHHHHHH
Q psy9281 114 ------K-------LLEETIKLAERIGEHSPLIVTQV 137 (152)
Q Consensus 114 ------~-------l~~~~~~~a~~l~~~~~~a~~~~ 137 (152)
+ +.+...+....+...++..+...
T Consensus 269 ~gga~~~~~~~~~~l~~~i~~~l~~l~~~~~~~l~~~ 305 (319)
T PRK05724 269 LGGAHRDPEAAAAALKEALLEALAELKGLSPEELLER 305 (319)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 2 22333444455556676655443
No 120
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=96.95 E-value=0.0064 Score=45.56 Aligned_cols=80 Identities=14% Similarity=0.072 Sum_probs=52.6
Q ss_pred hhchHHHHHHHHcCe--eEecCCeEEecccccccccCCccHHH---------------HHHHHhC--HHHHHHHHHcCCC
Q psy9281 34 IYLGGGCELAMMCDI--IYAGEKAKFGQPEIIIGTMPGAGGTQ---------------RLTRAAG--KSNAMEICLTGNQ 94 (152)
Q Consensus 34 ~a~G~G~~lal~cD~--ria~~~a~f~~pe~~~G~~p~~~~~~---------------~l~~~~g--~~~a~~lll~g~~ 94 (152)
.|.+.|..+++++|. |++.+++++.+-...-|..-...-.. .+.++.| .....+.+-.-.-
T Consensus 93 ~AaS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~~~i~~~~~rd~~ 172 (196)
T PRK12551 93 LAASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGARGQASDIRIQADEILFLKERLNTELSERTGQPLERIQEDTDRDFF 172 (196)
T ss_pred EehhHHHHHHhCCCCCceecCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhcCcC
Confidence 777888888899885 88999998777665433211110010 1222333 3345566666667
Q ss_pred CCHHHHHHcCCccccCCcc
Q psy9281 95 FTAQEAKEMGVVSKIFPPE 113 (152)
Q Consensus 95 ~~a~ea~~~Glv~~v~~~~ 113 (152)
++|+||+++||||++++..
T Consensus 173 msa~EA~eyGliD~I~~~~ 191 (196)
T PRK12551 173 MSPSEAVEYGLIDLVIDKR 191 (196)
T ss_pred CCHHHHHHcCCCcEEeccC
Confidence 9999999999999999753
No 121
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=96.29 E-value=0.025 Score=43.20 Aligned_cols=77 Identities=18% Similarity=0.122 Sum_probs=51.0
Q ss_pred hhchHHHHHHHHcCe--eEecCCeEEecccccccccCCccHHH-----------------HHHHHhC--HHHHHHHHHcC
Q psy9281 34 IYLGGGCELAMMCDI--IYAGEKAKFGQPEIIIGTMPGAGGTQ-----------------RLTRAAG--KSNAMEICLTG 92 (152)
Q Consensus 34 ~a~G~G~~lal~cD~--ria~~~a~f~~pe~~~G~~p~~~~~~-----------------~l~~~~g--~~~a~~lll~g 92 (152)
.|.+.|..|++++|- |++.+++++-+-....|.. +.+.- .+.++.| ...-.+.+-.-
T Consensus 117 ~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~~--G~A~di~~~a~el~~~r~~l~~iya~~TG~~~e~I~~d~~rd 194 (222)
T PRK12552 117 QAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGAR--GQATDIQIRAKEVLHNKRTMLEILSRNTGQTVEKLSKDTDRM 194 (222)
T ss_pred ehhhHHHHHHhCCCCCceecCCCcEEEeccCCcccc--cCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHhcCC
Confidence 777888889999996 8899999987766654431 11111 1111223 23333444444
Q ss_pred CCCCHHHHHHcCCccccCCc
Q psy9281 93 NQFTAQEAKEMGVVSKIFPP 112 (152)
Q Consensus 93 ~~~~a~ea~~~Glv~~v~~~ 112 (152)
.-+||+||+++||||+++.+
T Consensus 195 ~wmsA~EA~eyGliD~Ii~~ 214 (222)
T PRK12552 195 FYLTPQEAKEYGLIDRVLES 214 (222)
T ss_pred CcCCHHHHHHcCCCcEEecc
Confidence 55999999999999999864
No 122
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=96.04 E-value=0.037 Score=43.56 Aligned_cols=78 Identities=14% Similarity=0.155 Sum_probs=48.0
Q ss_pred hchHHHHHHHHcCeeEecCCeEEecccccccccCCccHHHHHHHHhCH--HHHHHHHHcCCCCCHHHHHHcCCccccCCc
Q psy9281 35 YLGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGK--SNAMEICLTGNQFTAQEAKEMGVVSKIFPP 112 (152)
Q Consensus 35 a~G~G~~lal~cD~ria~~~a~f~~pe~~~G~~p~~~~~~~l~~~~g~--~~a~~lll~g~~~~a~ea~~~Glv~~v~~~ 112 (152)
|+||+..++..||++|+++++++++...+ ......|. -...+--+.-+.+.+......|++|.++++
T Consensus 149 c~GG~a~~a~l~D~vim~~~a~i~~aGP~-----------VIe~~~G~e~~~~~d~~l~~~~lGG~~~~~sG~~D~~v~d 217 (274)
T TIGR03133 149 CFGGMGIAAGLCSYLIMTEEGRLGLSGPE-----------VIEQEAGVEEFDSRDRALVWRTTGGKHRFLSGDADVLVED 217 (274)
T ss_pred cchHHHHHHhcCCEEEEeCCcEEeccCHH-----------HHHHhcCCCccCHHHhcccccccchHhHhhcccceEEeCC
Confidence 89999999999999999998877663211 12222231 112222222233555667889999999986
Q ss_pred c--hHHHHHHHHH
Q psy9281 113 E--KLLEETIKLA 123 (152)
Q Consensus 113 ~--~l~~~~~~~a 123 (152)
| .+.+.+.++.
T Consensus 218 d~~a~~~~~~~~l 230 (274)
T TIGR03133 218 DVDAFRAAVIAAL 230 (274)
T ss_pred HHHHHHHHHHHHH
Confidence 4 4444444433
No 123
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=95.96 E-value=0.0088 Score=42.87 Aligned_cols=34 Identities=29% Similarity=0.382 Sum_probs=27.5
Q ss_pred HHHcCCCCCHHHHHHcCCccccCCcchHHHHHHH
Q psy9281 88 ICLTGNQFTAQEAKEMGVVSKIFPPEKLLEETIK 121 (152)
Q Consensus 88 lll~g~~~~a~ea~~~Glv~~v~~~~~l~~~~~~ 121 (152)
-+..|..+++++|++.||||++-..+++.+.+.+
T Consensus 116 ~~~~~~~~~~~~A~~~GLiD~i~~~~~~~~~l~~ 149 (154)
T PF01343_consen 116 EIADGGVFTAQQALELGLIDEIGTFDEAIARLAK 149 (154)
T ss_dssp CHHCCHEEEHHHHHHTTSSSEETSHHHHHHHHHH
T ss_pred HHHhhccccHHHHHHcCchhhcCCHHHHHHHHHH
Confidence 3578899999999999999999876666655444
No 124
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=95.96 E-value=0.036 Score=44.05 Aligned_cols=81 Identities=21% Similarity=0.177 Sum_probs=54.5
Q ss_pred hhchHHH-HHHHHcCeeEecCCeEEecccccccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCc
Q psy9281 34 IYLGGGC-ELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPP 112 (152)
Q Consensus 34 ~a~G~G~-~lal~cD~ria~~~a~f~~pe~~~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~ 112 (152)
+|+||+. .+++.+|++++.+++.+++...+ .+...++.. + . -+--+++-+.+.|+||.++++
T Consensus 204 pt~GG~aas~a~~~D~iia~p~A~ig~aGpr-----------vie~~~~e~----l-p-e~~~~ae~~~~~G~vD~Vv~~ 266 (292)
T PRK05654 204 PTTGGVSASFAMLGDIIIAEPKALIGFAGPR-----------VIEQTVREK----L-P-EGFQRAEFLLEHGAIDMIVHR 266 (292)
T ss_pred CCchHHHHHHHHcCCEEEEecCcEEEecCHH-----------HHHhhhhhh----h-h-hhhcCHHHHHhCCCCcEEECH
Confidence 8888864 45777999999888877764332 112222211 1 1 112356777899999999999
Q ss_pred chHHHHHHHHHHHHhcCCH
Q psy9281 113 EKLLEETIKLAERIGEHSP 131 (152)
Q Consensus 113 ~~l~~~~~~~a~~l~~~~~ 131 (152)
.++.+...++.+.+...++
T Consensus 267 ~e~r~~l~~~L~~~~~~~~ 285 (292)
T PRK05654 267 RELRDTLASLLALHTKQPA 285 (292)
T ss_pred HHHHHHHHHHHHHHhcCCC
Confidence 9999888888887665543
No 125
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=95.85 E-value=0.031 Score=43.92 Aligned_cols=38 Identities=29% Similarity=0.414 Sum_probs=35.4
Q ss_pred hhchHHHHHHHHcCeeEecCCeEEecccccccccCCcc
Q psy9281 34 IYLGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAG 71 (152)
Q Consensus 34 ~a~G~G~~lal~cD~ria~~~a~f~~pe~~~G~~p~~~ 71 (152)
.|+-+|..++++||-+++.+++.++-.+.++|-.|..+
T Consensus 128 ~A~SAGTlIALaADeIvM~p~a~LGpiDPqi~~~pA~s 165 (285)
T PF01972_consen 128 YAMSAGTLIALAADEIVMGPGAVLGPIDPQIGQYPAAS 165 (285)
T ss_pred ccccHHHHHHHhCCeEEECCCCccCCCCccccCCChHH
Confidence 99999999999999999999999999999999888643
No 126
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=95.59 E-value=0.033 Score=44.10 Aligned_cols=78 Identities=18% Similarity=0.168 Sum_probs=52.7
Q ss_pred hhchHHH-HHHHHcCeeEecCCeEEecccccccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCc
Q psy9281 34 IYLGGGC-ELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPP 112 (152)
Q Consensus 34 ~a~G~G~-~lal~cD~ria~~~a~f~~pe~~~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~ 112 (152)
+|+||+. .+++.+|++++.+++.+++...++ +.+.+|. -+- -+--+++-+.+.|+||.++++
T Consensus 203 pt~GG~aas~a~~~D~iia~p~A~ig~aGprV-----------ie~ti~e-----~lp-e~~q~ae~~~~~G~vD~iv~~ 265 (285)
T TIGR00515 203 PTTGGVSASFAMLGDLNIAEPKALIGFAGPRV-----------IEQTVRE-----KLP-EGFQTSEFLLEHGAIDMIVHR 265 (285)
T ss_pred CcchHHHHHHHhCCCEEEEECCeEEEcCCHHH-----------HHHHhcC-----ccc-hhcCCHHHHHhCCCCcEEECc
Confidence 8888864 456799999999998877744431 2222331 111 112356667889999999999
Q ss_pred chHHHHHHHHHHHHhc
Q psy9281 113 EKLLEETIKLAERIGE 128 (152)
Q Consensus 113 ~~l~~~~~~~a~~l~~ 128 (152)
.++.+...++...+..
T Consensus 266 ~~~r~~l~~~L~~~~~ 281 (285)
T TIGR00515 266 PEMKKTLASLLAKLQN 281 (285)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9998887777765543
No 127
>PRK11778 putative inner membrane peptidase; Provisional
Probab=95.49 E-value=0.045 Score=44.20 Aligned_cols=34 Identities=29% Similarity=0.476 Sum_probs=27.4
Q ss_pred HHHHcCCCCCHHHHHHcCCccccCCcchHHHHHH
Q psy9281 87 EICLTGNQFTAQEAKEMGVVSKIFPPEKLLEETI 120 (152)
Q Consensus 87 ~lll~g~~~~a~ea~~~Glv~~v~~~~~l~~~~~ 120 (152)
+-+.+|+.+++++|++.||||++...+++.....
T Consensus 261 ~~va~G~v~~g~~Al~~GLVD~Ig~~dd~i~~~~ 294 (330)
T PRK11778 261 DKVATGEHWYGQQALELGLVDEIQTSDDYLLELM 294 (330)
T ss_pred HHHHhCCCcCHHHHHHCCCCCcCCCHHHHHHHHH
Confidence 4467899999999999999999998766654433
No 128
>PRK10949 protease 4; Provisional
Probab=95.37 E-value=0.048 Score=47.61 Aligned_cols=35 Identities=23% Similarity=0.314 Sum_probs=27.0
Q ss_pred HHHcCCCCCHHHHHHcCCccccCCcchHHHHHHHH
Q psy9281 88 ICLTGNQFTAQEAKEMGVVSKIFPPEKLLEETIKL 122 (152)
Q Consensus 88 lll~g~~~~a~ea~~~Glv~~v~~~~~l~~~~~~~ 122 (152)
-+..|+.+++++|++.||||++-..++..+.+.++
T Consensus 505 ~ia~Grv~tg~~A~~~GLVD~lG~~~~ai~~a~~~ 539 (618)
T PRK10949 505 KIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAEL 539 (618)
T ss_pred HHhcCCcccHHHHHHcCCCccCCCHHHHHHHHHHH
Confidence 35789999999999999999998655554444443
No 129
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=95.02 E-value=0.084 Score=42.00 Aligned_cols=75 Identities=20% Similarity=0.151 Sum_probs=48.3
Q ss_pred hhchHHHHH-HHHcCeeEecCCeEEecccccccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCc
Q psy9281 34 IYLGGGCEL-AMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPP 112 (152)
Q Consensus 34 ~a~G~G~~l-al~cD~ria~~~a~f~~pe~~~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~ 112 (152)
+|.||+... ++.+|++|+.+++.+++...++ ....+|. -+- -.--+++-.++.|+||.++++
T Consensus 217 Pt~GG~aas~a~l~Diiiae~~A~IgfAGPrV-----------Ie~t~ge-----~lp-e~fq~ae~l~~~G~vD~iV~r 279 (296)
T CHL00174 217 PTTGGVTASFGMLGDIIIAEPNAYIAFAGKRV-----------IEQTLNK-----TVP-EGSQAAEYLFDKGLFDLIVPR 279 (296)
T ss_pred CCchHHHHHHHHcccEEEEeCCeEEEeeCHHH-----------HHHhcCC-----cCC-cccccHHHHHhCcCceEEEcH
Confidence 888888655 6679999998888766643221 1111221 000 011346778899999999999
Q ss_pred chHHHHHHHHHHH
Q psy9281 113 EKLLEETIKLAER 125 (152)
Q Consensus 113 ~~l~~~~~~~a~~ 125 (152)
.++.+....+..-
T Consensus 280 ~~lr~~l~~ll~~ 292 (296)
T CHL00174 280 NLLKGVLSELFQL 292 (296)
T ss_pred HHHHHHHHHHHHh
Confidence 9888777666544
No 130
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=94.88 E-value=0.066 Score=42.36 Aligned_cols=64 Identities=23% Similarity=0.330 Sum_probs=45.8
Q ss_pred HHHHHHHcCeeEecCCeEEecccccccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCc
Q psy9281 39 GCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPP 112 (152)
Q Consensus 39 G~~lal~cD~ria~~~a~f~~pe~~~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~ 112 (152)
|+-=...+|.+++-+++.++. +.|.++++..|... .++.+.. ..-+++++++++.|+||.++|.
T Consensus 203 GALAi~vad~V~mle~s~ySV------isPEG~AsILWkD~---~ka~eAA-e~mkita~dLk~lgiID~II~E 266 (317)
T COG0825 203 GALAIGVADRVLMLENSTYSV------ISPEGCASILWKDA---SKAKEAA-EAMKITAHDLKELGIIDGIIPE 266 (317)
T ss_pred hhHHhhHHHHHHHHHhceeee------cChhhhhhhhhcCh---hhhHHHH-HHcCCCHHHHHhCCCcceeccC
Confidence 333345679999999999886 56777777655543 3344432 2347999999999999999973
No 131
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=94.81 E-value=0.13 Score=38.66 Aligned_cols=80 Identities=20% Similarity=0.183 Sum_probs=43.7
Q ss_pred hhchHHHHHHHHcCee--EecCCeEEecccccccccCCccHHH----------------HHHHHhCHHHH--HHHHHcCC
Q psy9281 34 IYLGGGCELAMMCDII--YAGEKAKFGQPEIIIGTMPGAGGTQ----------------RLTRAAGKSNA--MEICLTGN 93 (152)
Q Consensus 34 ~a~G~G~~lal~cD~r--ia~~~a~f~~pe~~~G~~p~~~~~~----------------~l~~~~g~~~a--~~lll~g~ 93 (152)
.|...|..|+++.|.. ++.+++++-.-... |.+-+...=. .+.+.-|.... ...+-...
T Consensus 95 ~AaSmgs~l~~aG~~g~r~~lPnsrimIHqP~-gg~~G~a~Di~i~A~ei~~~~~~l~~i~a~~TGq~~e~i~~d~drd~ 173 (200)
T COG0740 95 QAASMGSVLLMAGDKGKRFALPNARIMIHQPS-GGAQGQASDIEIHAREILKIKERLNRIYAEHTGQTLEKIEKDTDRDT 173 (200)
T ss_pred HHHhHHHHHHhcCCCCCceeCCCceEEEecCC-ccCccCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHhhcccc
Confidence 4444556777777774 77777776554444 3222111100 01112232222 22223344
Q ss_pred CCCHHHHHHcCCccccCCcch
Q psy9281 94 QFTAQEAKEMGVVSKIFPPEK 114 (152)
Q Consensus 94 ~~~a~ea~~~Glv~~v~~~~~ 114 (152)
-++|+||+++||||+|.+..+
T Consensus 174 ~msa~eA~~yGLiD~V~~~~~ 194 (200)
T COG0740 174 WMSAEEAKEYGLIDKVIESRE 194 (200)
T ss_pred cCCHHHHHHcCCcceeccccc
Confidence 589999999999999987543
No 132
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=94.70 E-value=0.086 Score=42.31 Aligned_cols=78 Identities=27% Similarity=0.380 Sum_probs=53.5
Q ss_pred hhchHHHHHHHHcCeeEecCCeEEecccccccccCCccHHHHHHHHhC--------------------------------
Q psy9281 34 IYLGGGCELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAG-------------------------------- 81 (152)
Q Consensus 34 ~a~G~G~~lal~cD~ria~~~a~f~~pe~~~G~~p~~~~~~~l~~~~g-------------------------------- 81 (152)
+|.-||..+++++|.+||++++..+=-.+..+. |. ...+.++.|
T Consensus 138 ~AASGGY~IA~aAd~I~a~p~si~GSIGVi~~~-~~---~~~l~~k~Gv~~~~~~ag~~k~~~~~~~~~t~e~~~~~q~~ 213 (317)
T COG0616 138 YAASGGYYIALAADKIVADPSSITGSIGVISGA-PN---FEELLEKLGVEKEVITAGEYKDILSPFRPLTEEEREILQKE 213 (317)
T ss_pred eecchhhhhhccCCEEEecCCceeeeceeEEec-CC---HHHHHHhcCCceeeeeccccccccCcccCCCHHHHHHHHHH
Confidence 899999999999999999998875544443331 11 111222221
Q ss_pred ------------------HHHHHHHHHcCCCCCHHHHHHcCCccccCCcchH
Q psy9281 82 ------------------KSNAMEICLTGNQFTAQEAKEMGVVSKIFPPEKL 115 (152)
Q Consensus 82 ------------------~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~~~l 115 (152)
......-+.+|+-+++++|.+.||||++-..++.
T Consensus 214 ~~e~y~~F~~~V~~~R~~~~~~~~~~a~g~v~~g~~A~~~gLVDelg~~~~a 265 (317)
T COG0616 214 IDETYDEFVDKVAEGRGLSDEAVDKLATGRVWTGQQALELGLVDELGGLDDA 265 (317)
T ss_pred HHHHHHHHHHHHHhcCCCChhHHHHHhccceecHHHhhhcCCchhcCCHHHH
Confidence 1122356788999999999999999999864443
No 133
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=94.14 E-value=0.12 Score=39.95 Aligned_cols=72 Identities=13% Similarity=0.102 Sum_probs=43.0
Q ss_pred hhchHHHH-HHHHcCeeEecCCeEEecccccccccCCccHHHHHHHHhCHHHHHHHHHcC--CCCCHHHHHHcCCccccC
Q psy9281 34 IYLGGGCE-LAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTG--NQFTAQEAKEMGVVSKIF 110 (152)
Q Consensus 34 ~a~G~G~~-lal~cD~ria~~~a~f~~pe~~~G~~p~~~~~~~l~~~~g~~~a~~lll~g--~~~~a~ea~~~Glv~~v~ 110 (152)
.++|||+. +.+.+|.++|. |...++..++.+++..+.+.. ..+.++.-.- ...++..+.+.|+|++++
T Consensus 117 ~a~ggg~lamg~~ad~v~Al-------p~A~i~vm~~e~aa~I~~~~~--~~~~e~a~~~~~~a~~~~~~~~~G~vd~vi 187 (238)
T TIGR03134 117 KAISGAFLAHGLQADRIIAL-------PGAMVHVMDLESMARVTKRSV--EELEALAKSSPVFAPGIENFVKLGGVHALL 187 (238)
T ss_pred CccHHHHHHHccCcCeEEEc-------CCcEEEecCHHHHHHHHccCH--hHHHHHHHhhhhhccCHHHHHhCCCccEEe
Confidence 66666643 33336777665 555666666655555444333 2334443332 236778899999999999
Q ss_pred Ccch
Q psy9281 111 PPEK 114 (152)
Q Consensus 111 ~~~~ 114 (152)
++.+
T Consensus 188 ~~~~ 191 (238)
T TIGR03134 188 DVAD 191 (238)
T ss_pred CCCC
Confidence 8544
No 134
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=93.97 E-value=0.15 Score=40.71 Aligned_cols=25 Identities=24% Similarity=0.517 Sum_probs=23.0
Q ss_pred hchHHHHHHHHcCeeEecCCeEEec
Q psy9281 35 YLGGGCELAMMCDIIYAGEKAKFGQ 59 (152)
Q Consensus 35 a~G~G~~lal~cD~ria~~~a~f~~ 59 (152)
|+||+...+..||++|+++++++++
T Consensus 158 c~GG~a~~a~l~D~iIm~~~a~igl 182 (301)
T PRK07189 158 CFGGMGIAAALCSYLIVSEEGRLGL 182 (301)
T ss_pred CcHHHHHHHhcCCEEEEECCcEEec
Confidence 9999999999999999999887766
No 135
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=93.91 E-value=0.18 Score=42.89 Aligned_cols=59 Identities=24% Similarity=0.316 Sum_probs=43.4
Q ss_pred hhchHHHHHHHHcCeeEecCC-eEEecccccccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHH-------HHcCC
Q psy9281 34 IYLGGGCELAMMCDIIYAGEK-AKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEA-------KEMGV 105 (152)
Q Consensus 34 ~a~G~G~~lal~cD~ria~~~-a~f~~pe~~~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea-------~~~Gl 105 (152)
+|+|+|..++..||++|++++ +.+.+...+ +.+ ..+|+.++.++. ...|.
T Consensus 141 ~~~Gg~A~~~~~~d~~i~~~~~a~i~l~GP~------------vv~----------~~~Ge~~~~~~lgG~~~h~~~sG~ 198 (493)
T PF01039_consen 141 PCTGGGAYLAALSDFVIMVKGTARIFLAGPR------------VVE----------SATGEEVDSEELGGADVHAAKSGV 198 (493)
T ss_dssp EEEGGGGHHHHHSSEEEEETTTCEEESSTHH------------HHH----------HHHSSCTSHHHHHBHHHHHHTSSS
T ss_pred ccccchhhcccccCccccCccceEEEecccc------------ccc----------cccCccccchhhhhhhhhcccCCC
Confidence 999999999999999999987 776653211 111 244678887764 47899
Q ss_pred ccccCCcch
Q psy9281 106 VSKIFPPEK 114 (152)
Q Consensus 106 v~~v~~~~~ 114 (152)
++.++++|+
T Consensus 199 ~d~v~~de~ 207 (493)
T PF01039_consen 199 VDYVVDDEE 207 (493)
T ss_dssp SSEEESSHH
T ss_pred ceEEEechH
Confidence 999998653
No 136
>KOG1683|consensus
Probab=93.85 E-value=0.0084 Score=48.72 Aligned_cols=80 Identities=20% Similarity=0.201 Sum_probs=62.0
Q ss_pred HHHHHHcCeeEec--CCeEEecccccccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCc--chH
Q psy9281 40 CELAMMCDIIYAG--EKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPP--EKL 115 (152)
Q Consensus 40 ~~lal~cD~ria~--~~a~f~~pe~~~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~--~~l 115 (152)
+.++-+|+||+.. ..-..+..+...++..++.-.-.+...+|.+.+-.-+-.+.-++..|+++.|+++++.|. +++
T Consensus 166 vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~iD~~~t~fGf~~g~~~L~d~~gfdv~eal~~gl~~~~~~r~~eel 245 (380)
T KOG1683|consen 166 VVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPWLIDSLITKFGFRVGERALADGVGFDVAEALAVGLGDEIGPRIEEEL 245 (380)
T ss_pred EEeccCCceEEEecccHHHHHHHHHHHHcCCCHHHHHHHHHhcCccccHHHHhhccCccHHHHHhhccchhccchhHHHH
Confidence 7889999999987 444557888888865544445557777888777788888999999999999999999984 444
Q ss_pred HHHH
Q psy9281 116 LEET 119 (152)
Q Consensus 116 ~~~~ 119 (152)
.+..
T Consensus 246 ~~~~ 249 (380)
T KOG1683|consen 246 LEKG 249 (380)
T ss_pred HHHH
Confidence 4433
No 137
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=92.14 E-value=0.41 Score=39.97 Aligned_cols=79 Identities=22% Similarity=0.200 Sum_probs=58.7
Q ss_pred hhchHHHHHHHHcCeeEecCCeEEecccccccc---cCCcc-HHHH------HHHHhC--HHHHHHHHHcCCCCCHHHHH
Q psy9281 34 IYLGGGCELAMMCDIIYAGEKAKFGQPEIIIGT---MPGAG-GTQR------LTRAAG--KSNAMEICLTGNQFTAQEAK 101 (152)
Q Consensus 34 ~a~G~G~~lal~cD~ria~~~a~f~~pe~~~G~---~p~~~-~~~~------l~~~~g--~~~a~~lll~g~~~~a~ea~ 101 (152)
.|.-+|..++++||+..|.+.+.++-...-.+- ..... .... +.+.-| ...|.+++.....++++||.
T Consensus 98 ~AaSAGtyI~m~~hiaaMAPgT~iGaa~Pi~~~g~~~~~~~~~n~~~ay~~~~A~~~gRN~~~ae~~v~~~~~l~a~eA~ 177 (436)
T COG1030 98 RAASAGTYILMATHIAAMAPGTNIGAATPIAGGGTSAKEANTTNAAVAYIRSLAEERGRNPTWAERFVTENLSLTAEEAL 177 (436)
T ss_pred chhchhhHHHHhcChhhhCCCCcccccceecCCCCCccchhhHHHHHHHHHHHHHHcCCChHHHHHHhhhccCCChhHHH
Confidence 688999999999999999999888876665433 11111 1111 222223 56889999999999999999
Q ss_pred HcCCccccCCc
Q psy9281 102 EMGVVSKIFPP 112 (152)
Q Consensus 102 ~~Glv~~v~~~ 112 (152)
+.|++|-+..+
T Consensus 178 ~~~vid~iA~~ 188 (436)
T COG1030 178 RQGVIDLIARD 188 (436)
T ss_pred hcCccccccCC
Confidence 99999998864
No 138
>KOG0840|consensus
Probab=91.86 E-value=0.27 Score=38.28 Aligned_cols=76 Identities=20% Similarity=0.294 Sum_probs=42.4
Q ss_pred hhchHHHHHHHHcCeeE-ecCCeEEecccccccccCCccHHH-----H---HHH--------------HhC--HHHHHHH
Q psy9281 34 IYLGGGCELAMMCDIIY-AGEKAKFGQPEIIIGTMPGAGGTQ-----R---LTR--------------AAG--KSNAMEI 88 (152)
Q Consensus 34 ~a~G~G~~lal~cD~ri-a~~~a~f~~pe~~~G~~p~~~~~~-----~---l~~--------------~~g--~~~a~~l 88 (152)
.|+|-++.++.. +.- .+.+-++++|..++=+.-+.++.. . ..+ ..| .....+-
T Consensus 156 ic~G~Aas~aal--LLaaG~KG~R~alPnsriMIhQP~gga~Gqa~Di~i~akE~~~~k~~l~~i~a~~Tgq~~e~i~~d 233 (275)
T KOG0840|consen 156 ICVGLAASMAAL--LLAAGAKGKRYALPNSRIMIHQPSGGAGGQATDIVIQAKELMRIKEYLNEIYAKHTGQPLEVIEKD 233 (275)
T ss_pred eehhhHHhHHHH--HHhcCCCcceeecCCceeEEeccCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHhh
Confidence 777777655543 112 245667888888776633333211 0 111 111 1112222
Q ss_pred HHcCCCCCHHHHHHcCCccccCC
Q psy9281 89 CLTGNQFTAQEAKEMGVVSKIFP 111 (152)
Q Consensus 89 ll~g~~~~a~ea~~~Glv~~v~~ 111 (152)
+-.-+-++|+||.++||||.|++
T Consensus 234 ~dRd~fmsa~EA~eyGliD~v~~ 256 (275)
T KOG0840|consen 234 MDRDRFMSAEEAKEYGLIDKVID 256 (275)
T ss_pred hcccccCCHHHHHHhcchhhhhc
Confidence 23344589999999999999985
No 139
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=90.36 E-value=1.1 Score=38.32 Aligned_cols=86 Identities=19% Similarity=0.229 Sum_probs=50.0
Q ss_pred hhchHHHHHHHH-----cCeeEecCCeEEecccccccccCCccHHHHHH-HHhC----HHHHHHHH---HcCCCCCHHHH
Q psy9281 34 IYLGGGCELAMM-----CDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLT-RAAG----KSNAMEIC---LTGNQFTAQEA 100 (152)
Q Consensus 34 ~a~G~G~~lal~-----cD~ria~~~a~f~~pe~~~G~~p~~~~~~~l~-~~~g----~~~a~~ll---l~g~~~~a~ea 100 (152)
.++|+|. ++++ +|++++.+++.++. .++.+++..+- +.+. +..++.-. ..-+..++..+
T Consensus 398 ~~~Gga~-~am~~~~~~~d~~~a~p~a~~~v-------~~pe~a~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (512)
T TIGR01117 398 KAYGGAY-LAMCSKHLGADQVYAWPTAEIAV-------MGPAGAANIIFRKDIKEAKDPAATRKQKIAEYREEFANPYKA 469 (512)
T ss_pred CCchHHH-HHhccccCCCCEEEEcCCCeEee-------cCHHHHHHHHhhhhcccccCHHHHHHHHHHHHHHhhcCHHHH
Confidence 6777754 4444 88887777765544 33333222222 2111 11111111 11234578899
Q ss_pred HHcCCccccCCcchHHHHHHHHHHHHh
Q psy9281 101 KEMGVVSKIFPPEKLLEETIKLAERIG 127 (152)
Q Consensus 101 ~~~Glv~~v~~~~~l~~~~~~~a~~l~ 127 (152)
.+.|+||.|+++.++.+......+.+.
T Consensus 470 a~~g~vD~VI~P~~tR~~l~~~l~~~~ 496 (512)
T TIGR01117 470 AARGYVDDVIEPKQTRPKIVNALAMLE 496 (512)
T ss_pred HhcCCCCeeEChHHHHHHHHHHHHHHh
Confidence 999999999999988877766666544
No 140
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=89.96 E-value=0.68 Score=39.69 Aligned_cols=71 Identities=21% Similarity=0.289 Sum_probs=45.4
Q ss_pred hhchHHHHHHHHcCeeEecCCe-EEecccccccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHH-----H--HcCC
Q psy9281 34 IYLGGGCELAMMCDIIYAGEKA-KFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEA-----K--EMGV 105 (152)
Q Consensus 34 ~a~G~G~~lal~cD~ria~~~a-~f~~pe~~~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea-----~--~~Gl 105 (152)
+|.||+......||++|+++++ ++.+. +.. +.+. .+|+.++++|. + ..|.
T Consensus 164 ~~~GG~a~~~al~D~vim~~~~a~i~~a-----------GP~-vv~~----------~~Ge~v~~e~lGGa~~h~~~sGv 221 (512)
T TIGR01117 164 PCAGGAVYSPALTDFIYMVDNTSQMFIT-----------GPQ-VIKT----------VTGEEVTAEQLGGAMAHNSVSGV 221 (512)
T ss_pred CCCcHHHHHHHhcCceEEeccceEEEec-----------ChH-HHHh----------hcCcccchhhcchHHHhccccce
Confidence 9999998888899999999864 44441 111 2222 33455555554 2 5899
Q ss_pred ccccCCcc-hHHHHHHHHHHHH
Q psy9281 106 VSKIFPPE-KLLEETIKLAERI 126 (152)
Q Consensus 106 v~~v~~~~-~l~~~~~~~a~~l 126 (152)
++.++++| +..+.++++..-+
T Consensus 222 ~d~~~~de~ea~~~~r~~ls~l 243 (512)
T TIGR01117 222 AHFIAEDDDDCIMLIRRLLSFL 243 (512)
T ss_pred eEEecCChHHHHHHHHHHHHhC
Confidence 99998754 5555555555544
No 141
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=85.29 E-value=0.73 Score=34.63 Aligned_cols=30 Identities=23% Similarity=0.327 Sum_probs=24.2
Q ss_pred HHHHcCCCCCHHHHHHcCCccccCCcchHH
Q psy9281 87 EICLTGNQFTAQEAKEMGVVSKIFPPEKLL 116 (152)
Q Consensus 87 ~lll~g~~~~a~ea~~~Glv~~v~~~~~l~ 116 (152)
+-+..|..++++||++.||||++...++..
T Consensus 178 ~~~~~~~~~~~~~A~~~GLvD~i~~~~~~~ 207 (211)
T cd07019 178 DKIAQGHVWTGQDAKANGLVDSLGDFDDAV 207 (211)
T ss_pred HHhcCCcEEeHHHHHHcCCcccCCCHHHHH
Confidence 335678899999999999999998755543
No 142
>smart00250 PLEC Plectin repeat.
Probab=84.22 E-value=0.93 Score=24.53 Aligned_cols=18 Identities=28% Similarity=0.567 Sum_probs=16.9
Q ss_pred cCCCCCHHHHHHcCCccc
Q psy9281 91 TGNQFTAQEAKEMGVVSK 108 (152)
Q Consensus 91 ~g~~~~a~ea~~~Glv~~ 108 (152)
+|+++|-.||.+.|+++.
T Consensus 18 t~~~lsv~eA~~~glid~ 35 (38)
T smart00250 18 TGQKLSVEEALRRGLIDP 35 (38)
T ss_pred CCCCcCHHHHHHcCCCCc
Confidence 899999999999999985
No 143
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=83.83 E-value=1.7 Score=34.25 Aligned_cols=81 Identities=23% Similarity=0.235 Sum_probs=55.3
Q ss_pred hhchHH-HHHHHHcCeeEecCCeEEecccccccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccCCc
Q psy9281 34 IYLGGG-CELAMMCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIFPP 112 (152)
Q Consensus 34 ~a~G~G-~~lal~cD~ria~~~a~f~~pe~~~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~~~ 112 (152)
++.||= +.+++.-|+.|+-++|.+++...++ .-+ ..++-+..| --+++-.++.|+||.++++
T Consensus 205 PTtGGVsASfA~lGDi~iAEP~AlIGFAGpRV-----------IEQ-----Tire~LPeg-fQ~aEfLlehG~iD~iv~R 267 (294)
T COG0777 205 PTTGGVSASFAMLGDIIIAEPGALIGFAGPRV-----------IEQ-----TIREKLPEG-FQTAEFLLEHGMIDMIVHR 267 (294)
T ss_pred CCccchhHhHHhccCeeecCcccccccCcchh-----------hhh-----hhcccCCcc-hhhHHHHHHcCCceeeecH
Confidence 666654 7889999999888777776654331 111 122223333 2457788999999999999
Q ss_pred chHHHHHHHHHHHHhcCCH
Q psy9281 113 EKLLEETIKLAERIGEHSP 131 (152)
Q Consensus 113 ~~l~~~~~~~a~~l~~~~~ 131 (152)
.++.+....+...+...++
T Consensus 268 ~elr~tla~ll~~~~~~~~ 286 (294)
T COG0777 268 DELRTTLASLLAKLTPQPA 286 (294)
T ss_pred HHHHHHHHHHHHHhCCCCC
Confidence 9998887777777665543
No 144
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=83.28 E-value=3.9 Score=35.63 Aligned_cols=71 Identities=20% Similarity=0.253 Sum_probs=43.4
Q ss_pred hhchHHHHHHHHcCeeEecC-CeEEecccccccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHH-----H--HcCC
Q psy9281 34 IYLGGGCELAMMCDIIYAGE-KAKFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEA-----K--EMGV 105 (152)
Q Consensus 34 ~a~G~G~~lal~cD~ria~~-~a~f~~pe~~~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea-----~--~~Gl 105 (152)
+|.|||......||++|+++ ++.+.+. +.. +.+. .+|+.++++|. + ..|.
T Consensus 215 ~~~gGgAy~~a~~D~vim~~~~a~i~~a-----------GP~-vV~~----------~~Ge~v~~eeLGGa~~h~~~sGv 272 (569)
T PLN02820 215 SCTAGGAYVPAMADESVIVKGNGTIFLA-----------GPP-LVKA----------ATGEEVSAEDLGGADVHCKVSGV 272 (569)
T ss_pred CCChHHHHHHHhCCceEEecCCcEEEec-----------CHH-HHHh----------hcCcccCHHHhCCHHHhcccccc
Confidence 79999999999999999886 4545441 111 2222 34555665554 2 4788
Q ss_pred ccccCCcc-hHHHHHHHHHHHH
Q psy9281 106 VSKIFPPE-KLLEETIKLAERI 126 (152)
Q Consensus 106 v~~v~~~~-~l~~~~~~~a~~l 126 (152)
++.++++| +..+.++++..-+
T Consensus 273 ~d~~~~de~~a~~~~R~lls~L 294 (569)
T PLN02820 273 SDHFAQDELHALAIGRNIVKNL 294 (569)
T ss_pred cccccCchHHHHHHHHHHHHhc
Confidence 88888755 3334444444444
No 145
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=80.92 E-value=1 Score=38.70 Aligned_cols=71 Identities=21% Similarity=0.346 Sum_probs=44.3
Q ss_pred hhchHHHHHHHHcCeeEecCCe-EEecccccccccCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHH-------HHcCC
Q psy9281 34 IYLGGGCELAMMCDIIYAGEKA-KFGQPEIIIGTMPGAGGTQRLTRAAGKSNAMEICLTGNQFTAQEA-------KEMGV 105 (152)
Q Consensus 34 ~a~G~G~~lal~cD~ria~~~a-~f~~pe~~~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~ea-------~~~Gl 105 (152)
.|.|||+.+...||++|++++. ++.+. + .. +.+. .+|+.++++|+ ...|.
T Consensus 173 ~c~gGgaY~pal~D~~imv~~~~~mflt--------G---P~-~ik~----------vtGe~V~~e~LGGa~vh~~~sGv 230 (526)
T COG4799 173 PCAGGGAYSPALTDFVIMVRDQSYMFLT--------G---PP-VIKA----------VTGEEVSAEELGGAQVHARKSGV 230 (526)
T ss_pred cCcccccccccccceEEEEcCCccEEee--------C---HH-HHHh----------hcCcEeehhhccchhhhcccccc
Confidence 9999999999999999999884 33221 1 11 2222 34555555432 23488
Q ss_pred ccccCCcchHHHHHHHHHHHHhcC
Q psy9281 106 VSKIFPPEKLLEETIKLAERIGEH 129 (152)
Q Consensus 106 v~~v~~~~~l~~~~~~~a~~l~~~ 129 (152)
++.++++|+ .+.++++++.++
T Consensus 231 a~~~a~dd~---~Ai~~vr~~lsy 251 (526)
T COG4799 231 ADLLAEDDE---DAIELVRRLLSY 251 (526)
T ss_pred eeeeecCHH---HHHHHHHHHHHh
Confidence 888886543 455556555543
No 146
>PF00681 Plectin: Plectin repeat; InterPro: IPR001101 Plectin may have a role in cross-linking intermediate filaments, in inter-linking intermediate filaments with microtubules and microfilaments and in anchoring intermediate filaments to the plasma and nuclear membranes. Plectin is recruited into hemidesmosomes, multiprotein complexes that facilitate adhesion of epithelia to the basement membrane, thereby providing linkage between the intracellular keratin filaments to the laminins of the extracellular matrix. Plectin binds to hemidesmosomes through association of its actin-binding domain with the first pair of fibronectin type III repeats and a small part of the connecting segment of the integrin-beta4 subunit, the latter (integrin-alpha6,beta4) acting as a receptor for the extracellular matrix component laminin-5. The plectin repeat is also seen in the cell adhesion junction plaque proteins, desmoplakin, envoplakin, and bullous pemphigoid antigen. The domains in plakins show considerable sequence homology. The N terminus consists of a plakin domain containing a number of subdomains with high alpha-helical content, while the central coiled-coil domain is composed of heptad repeats involved in the dimerisation of plakin, and the C terminus contains one or more homologous repeat sequences referred to plectin repeats []. This entry represents the plectin repeats found in the C terminus of plakin proteins.; GO: 0005856 cytoskeleton; PDB: 1LM7_A 1LM5_A.
Probab=80.18 E-value=0.6 Score=26.34 Aligned_cols=20 Identities=25% Similarity=0.438 Sum_probs=16.7
Q ss_pred HcCCCCCHHHHHHcCCcccc
Q psy9281 90 LTGNQFTAQEAKEMGVVSKI 109 (152)
Q Consensus 90 l~g~~~~a~ea~~~Glv~~v 109 (152)
-+|++++-+||.+.|+|+.-
T Consensus 17 ~tg~~lsv~~A~~~glId~~ 36 (45)
T PF00681_consen 17 ETGERLSVEEAIQRGLIDSD 36 (45)
T ss_dssp TTTEEEEHHHHHHTTSS-HH
T ss_pred CCCeEEcHHHHHHCCCcCHH
Confidence 47899999999999999863
No 147
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=79.06 E-value=9.5 Score=33.30 Aligned_cols=28 Identities=14% Similarity=-0.083 Sum_probs=21.9
Q ss_pred CCHHHHHHcCCccccCCcchHHHHHHHH
Q psy9281 95 FTAQEAKEMGVVSKIFPPEKLLEETIKL 122 (152)
Q Consensus 95 ~~a~ea~~~Glv~~v~~~~~l~~~~~~~ 122 (152)
.++++|++.||||++...+++.+...+.
T Consensus 252 ~~a~~A~~~gLVD~l~~~de~~~~l~~~ 279 (584)
T TIGR00705 252 DGARYALAEKLVTAVCSYAEAGKALKFL 279 (584)
T ss_pred chHHHHHHCCCcccCCCHHHHHHHHHHH
Confidence 4789999999999999877766554443
No 148
>PRK10949 protease 4; Provisional
Probab=72.29 E-value=19 Score=31.81 Aligned_cols=28 Identities=18% Similarity=0.100 Sum_probs=22.0
Q ss_pred CCCHHHHHHcCCccccCCcchHHHHHHH
Q psy9281 94 QFTAQEAKEMGVVSKIFPPEKLLEETIK 121 (152)
Q Consensus 94 ~~~a~ea~~~Glv~~v~~~~~l~~~~~~ 121 (152)
..++++|++.||||++...+++.+...+
T Consensus 270 ~~~a~~Al~~GLVD~l~~~de~~~~l~~ 297 (618)
T PRK10949 270 GDTAKYALDNKLVDALASSAEIEKALTK 297 (618)
T ss_pred CccHHHHHHCCCCCcCCCHHHHHHHHHH
Confidence 3589999999999999987776654444
No 149
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=67.24 E-value=30 Score=30.29 Aligned_cols=88 Identities=13% Similarity=0.002 Sum_probs=50.3
Q ss_pred hhchHHHHHHH----HcCeeEecCCeEEecccccccccCCccHHHHHHHH-h------------CHHHH-HHH--HHcCC
Q psy9281 34 IYLGGGCELAM----MCDIIYAGEKAKFGQPEIIIGTMPGAGGTQRLTRA-A------------GKSNA-MEI--CLTGN 93 (152)
Q Consensus 34 ~a~G~G~~lal----~cD~ria~~~a~f~~pe~~~G~~p~~~~~~~l~~~-~------------g~~~a-~~l--ll~g~ 93 (152)
.++|+|..-+. ..|++++. |..++|+.++.+++..+-+. + ....+ ++. -..-+
T Consensus 449 ~a~G~g~~aM~g~~~~~d~~~aw-------p~A~i~vmg~e~aa~il~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (569)
T PLN02820 449 GSFGAGNYGMCGRAYSPNFLFMW-------PNARIGVMGGAQAAGVLAQIERENKKRQGIQWSKEEEEAFKAKTVEAYER 521 (569)
T ss_pred CcchHHHHHhcCcCCCCCEEEEC-------CCCeEEecCHHHHHHHHHHHHhhhhhhccccCCccHHHHHHHHHHHHHHH
Confidence 77887754443 44555555 55566666655555544331 1 11100 111 11122
Q ss_pred CCCHHHHHHcCCccccCCcchHHHHHHHHHHHHhc
Q psy9281 94 QFTAQEAKEMGVVSKIFPPEKLLEETIKLAERIGE 128 (152)
Q Consensus 94 ~~~a~ea~~~Glv~~v~~~~~l~~~~~~~a~~l~~ 128 (152)
..++..+.+.|+||.|+++.+.........+....
T Consensus 522 ~~~p~~aa~~~~vD~VIdP~dTR~~l~~~l~~~~~ 556 (569)
T PLN02820 522 EANPYYSTARLWDDGVIDPADTRRVLGLCLSAALN 556 (569)
T ss_pred hCCHHHHHHcCCcCcccCHHHHHHHHHHHHHHhhc
Confidence 46788899999999999988877666655554443
No 150
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=57.72 E-value=12 Score=31.98 Aligned_cols=35 Identities=20% Similarity=0.191 Sum_probs=27.9
Q ss_pred CCHHHHHHcCCccccCCcchHHHHHHHHHHHHhcC
Q psy9281 95 FTAQEAKEMGVVSKIFPPEKLLEETIKLAERIGEH 129 (152)
Q Consensus 95 ~~a~ea~~~Glv~~v~~~~~l~~~~~~~a~~l~~~ 129 (152)
.++..+.+.|++|.++++.++............+.
T Consensus 447 ~~~~~~a~~~~~D~ii~p~~tR~~l~~~l~~~~~~ 481 (493)
T PF01039_consen 447 SSPYRAASRGYVDDIIDPAETRKVLIAALEMLWQK 481 (493)
T ss_dssp SSHHHHHHTTSSSEESSGGGHHHHHHHHHHHHTTS
T ss_pred CCHHHHHhcCCCCCccCHHHHHHHHHHHHHHHHhC
Confidence 67899999999999999998887766666555443
No 151
>PF08338 DUF1731: Domain of unknown function (DUF1731); InterPro: IPR013549 This domain of unknown function appears towards the C terminus of proteins of the NAD dependent epimerase/dehydratase family (IPR001509 from INTERPRO) in bacteria, eukaryotes and archaea. Many of the proteins in which it is found are involved in cell-division inhibition. ; PDB: 3OH8_A.
Probab=32.21 E-value=9.2 Score=21.86 Aligned_cols=33 Identities=21% Similarity=0.238 Sum_probs=16.1
Q ss_pred HHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccccC
Q psy9281 76 LTRAAGKSNAMEICLTGNQFTAQEAKEMGVVSKIF 110 (152)
Q Consensus 76 l~~~~g~~~a~~lll~g~~~~a~ea~~~Glv~~v~ 110 (152)
+.-.+| ..+ ++++.|.+..++.+.+.|+-=+.-
T Consensus 6 lkl~lG-e~a-~lll~~q~v~P~kL~~~GF~F~~p 38 (48)
T PF08338_consen 6 LKLLLG-EMA-ELLLASQRVSPKKLLEAGFQFRYP 38 (48)
T ss_dssp ---------G-GGGG-EEEE--HHHHHTT---S-S
T ss_pred HHHHHH-HHH-HHHhCCCeecChHHHHCCCcccCC
Confidence 334467 566 999999999999999999965543
No 152
>PF13766 ECH_C: 2-enoyl-CoA Hydratase C-terminal region; PDB: 3JU1_A 3BPT_A.
Probab=29.49 E-value=68 Score=21.78 Aligned_cols=33 Identities=21% Similarity=0.133 Sum_probs=25.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccccCCCC
Q psy9281 118 ETIKLAERIGEHSPLIVTQVKEAVNIDDTEGLN 150 (152)
Q Consensus 118 ~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~ 150 (152)
-+.+..+.+...+|.++..+-+.+++....+++
T Consensus 32 ~a~~~~~~l~~~SP~Sl~vt~~~l~~~~~~sl~ 64 (118)
T PF13766_consen 32 WAQKTLETLRSGSPLSLKVTFEQLRRGRNLSLA 64 (118)
T ss_dssp HHHHHHHHHCCS-HHHHHHHHHHHHCCTTS-HH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHhhhCCHH
Confidence 466777888999999999999999987765543
No 153
>COG2087 CobU Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase [Coenzyme metabolism]
Probab=25.79 E-value=80 Score=23.29 Aligned_cols=29 Identities=17% Similarity=0.219 Sum_probs=25.0
Q ss_pred CeEEecccccccccCCccHHHHHHHHhCH
Q psy9281 54 KAKFGQPEIIIGTMPGAGGTQRLTRAAGK 82 (152)
Q Consensus 54 ~a~f~~pe~~~G~~p~~~~~~~l~~~~g~ 82 (152)
+..|.-+|+.+|++|.......+..++|.
T Consensus 122 ~~ilVsNEvG~GiVPe~~l~R~fRD~~G~ 150 (175)
T COG2087 122 TVVLVSNEVGLGIVPEYRLGRLFRDIAGR 150 (175)
T ss_pred cEEEEecCccCCcCcCchhhHHHHHHHhH
Confidence 56788899999999999888888888884
No 154
>PF08406 CbbQ_C: CbbQ/NirQ/NorQ C-terminal ; InterPro: IPR013615 This domain is found at the C terminus of proteins of the CbbQ/NirQ/NorQ family of proteins which play a role in the post-translational activation of Rubisco []. It is also found in the Thauera aromaticaTutH protein which is similar to the CbbQ/NirQ/NorQ family [], as well as in putative chaperones. The ATPase domain associated with various cellular activities (AAA) IPR011704 from INTERPRO is found in the same bacterial and archaeal proteins as the domain described here.
Probab=22.82 E-value=1.7e+02 Score=18.80 Aligned_cols=32 Identities=13% Similarity=0.160 Sum_probs=25.2
Q ss_pred CCCHHHHHHcCCccccCCcchHHHHHHHHHHH
Q psy9281 94 QFTAQEAKEMGVVSKIFPPEKLLEETIKLAER 125 (152)
Q Consensus 94 ~~~a~ea~~~Glv~~v~~~~~l~~~~~~~a~~ 125 (152)
-+++.+|.+..+++.+-++.++.+...++++.
T Consensus 53 G~~~~~A~~~ai~~~Ltdd~~~~~al~~~i~~ 84 (86)
T PF08406_consen 53 GMDPRQACRAAIVEPLTDDPDVREALRELIDA 84 (86)
T ss_pred CCCHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Confidence 47889999999999998877777666666543
No 155
>PF06518 DUF1104: Protein of unknown function (DUF1104); InterPro: IPR009488 This family consists of several hypothetical proteins of unknown function which appear to be found exclusively in Helicobacter pylori.; PDB: 2XRH_A.
Probab=22.61 E-value=1.3e+02 Score=19.74 Aligned_cols=40 Identities=10% Similarity=0.208 Sum_probs=28.0
Q ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHhccccCCC
Q psy9281 110 FPPEKLLEETIKLAERIGEHSPLIVTQVKEAVNIDDTEGL 149 (152)
Q Consensus 110 ~~~~~l~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l 149 (152)
|++.++.+...++-+++....+.-....++.+......++
T Consensus 18 v~~k~~~dy~~Ei~KR~~~m~~~~~k~f~~~~~~~~~kn~ 57 (93)
T PF06518_consen 18 VDPKDVPDYKMEIHKRLKKMKEKEAKDFKKQFKEAARKNL 57 (93)
T ss_dssp S-GGGHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 4667888899999999998888776677766665544333
Done!